CmoCh02G010980 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh02G010980
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionUnknown protein
LocationCmo_Chr02 : 6656984 .. 6657694 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTTTTAGTAACGCAAGTCATCAACTTAAGGTCTTCGATCGGCAGCCGATCTTCAGGGAAGGGACATCCGTCGCTACTCACCACCTCCTTAGCCAGCGGAGCACACGGCGGTGGTACCACATCGCTACTGTATCCTTCAACATTTGTACAGTTCCATTGCAATTTCTTCTGCTTCGCTGTTAGTCCAATTTTTATATTTGAAATACAAATATCGGTGAATGGATCTCCTGAAATCCCATCCAATCTTGCTGAGTAAGTCACATTTTCTGCCACCACATCTCTGTAATTAATGTTCTTAATTTCCGGCAGCGCCTTTGGATCGAACTTCTCGTCTGGATGGGACTTGTAGTCTCCGGTCATCCAGAAGACGTATTTCATCGTGGATAGAAACATTTGTCGGACGAAAATGTCCTTGACATACCCACCTCGTCCAATGGCAGTTTTAATTCTCACGGCGGATTGAGTGTTGATTGCAGTGACATTTTCGATTCTGACGTTACGGATTCCACCGGACATTTCACTGCCGAGGGCAATGCCGGCAGAATCTGGAGAGATGCAAGTGAGGCGGCGGATGAGGAGGTCCTCGGTTGGCATTCCGAATTGGATTCCATATTGGTCCCATCCACTCTTGACAGCAATGCAGTCGTCACCGGAGACAATGAAGCAGTCTTCAATTCGAGTATTGATGCAAGAATCTGTGAAAATTGA

mRNA sequence

ATGATTTTTAGTAACGCAAGTCATCAACTTAAGGTCTTCGATCGGCAGCCGATCTTCAGGGAAGGGACATCCGTCGCTACTCACCACCTCCTTAGCCAGCGGAGCACACGGCGGTGGTACCACATCGCTACTCGCCTTTGGATCGAACTTCTCGTCTGGATGGGACTTGTAGTCTCCGGTCATCCAGAAGACAAACATTTGTCGGACGAAAATGTCCTTGACATACCCACCTCGTCCAATGGCAGTTTTAATTCTCACGGCGGATTGAGTGTTGATTGCAGTGACATTTTCGATTCTGACGTTACGGATTCCACCGGACATTTCACTGCCGAGGGCAATGCCGGCAGAATCTGGAGAGATGCAAGTGAGGCGGCGGATGAGGAGGTCCTCGGTTGGCATTCCGAATTGGATTCCATATTGGTCCCATCCACTCTTGACAGCAATGCAGTCGTCACCGGAGACAATGAAGCAGTCTTCAATTCGAGTATTGATGCAAGAATCTGTGAAAATTGA

Coding sequence (CDS)

ATGATTTTTAGTAACGCAAGTCATCAACTTAAGGTCTTCGATCGGCAGCCGATCTTCAGGGAAGGGACATCCGTCGCTACTCACCACCTCCTTAGCCAGCGGAGCACACGGCGGTGGTACCACATCGCTACTCGCCTTTGGATCGAACTTCTCGTCTGGATGGGACTTGTAGTCTCCGGTCATCCAGAAGACAAACATTTGTCGGACGAAAATGTCCTTGACATACCCACCTCGTCCAATGGCAGTTTTAATTCTCACGGCGGATTGAGTGTTGATTGCAGTGACATTTTCGATTCTGACGTTACGGATTCCACCGGACATTTCACTGCCGAGGGCAATGCCGGCAGAATCTGGAGAGATGCAAGTGAGGCGGCGGATGAGGAGGTCCTCGGTTGGCATTCCGAATTGGATTCCATATTGGTCCCATCCACTCTTGACAGCAATGCAGTCGTCACCGGAGACAATGAAGCAGTCTTCAATTCGAGTATTGATGCAAGAATCTGTGAAAATTGA
Homology
[Close]
BLAST of CmoCh02G010980 vs. TrEMBL
Match: C0PCU3_MAIZE (Uncharacterized protein OS=Zea mays PE=2 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 2.1e-07
Identity = 41/120 (34.17%), Postives = 59/120 (49.17%), Query Frame = 1 

Query: 57  VVSGHPE------DKHLSDENVLDIPTSSNGSFNSHGGLSVDCSDIFDSDVTDSTGHFTA 116
           VV+GHPE      +   + E+V D         +  G L VD   +  + V D+ GH  A
Sbjct: 143 VVAGHPEHPLHGVEAEAAHEDVPDEAAPPGAGLDPDGRLRVDGHAVLGAHVADAAGHLAA 202

Query: 117 EGNAGRIWRDASEAADEEVLGWHSELDSILVPSTLDSNAVVTGDNEAVFNSSIDARICEN 171
           + + G    DA +  D++VL  H E D++LVP  L  +AVV GD+ AV +     RI  N
Sbjct: 203 QRDHGARGGDAGQPPDDDVLARHVEPDAVLVPPALHGHAVVAGDDVAVLDLDTRGRIRVN 262

[Close]
BLAST of CmoCh02G010980 vs. NCBI nr
Match: gi|223975601|gb|ACN31988.1| (unknown [Zea mays])

HSP 1 Score: 63.9 bits (154), Expect = 3.0e-07
Identity = 41/120 (34.17%), Postives = 59/120 (49.17%), Query Frame = 1 

Query: 57  VVSGHPE------DKHLSDENVLDIPTSSNGSFNSHGGLSVDCSDIFDSDVTDSTGHFTA 116
           VV+GHPE      +   + E+V D         +  G L VD   +  + V D+ GH  A
Sbjct: 143 VVAGHPEHPLHGVEAEAAHEDVPDEAAPPGAGLDPDGRLRVDGHAVLGAHVADAAGHLAA 202

Query: 117 EGNAGRIWRDASEAADEEVLGWHSELDSILVPSTLDSNAVVTGDNEAVFNSSIDARICEN 171
           + + G    DA +  D++VL  H E D++LVP  L  +AVV GD+ AV +     RI  N
Sbjct: 203 QRDHGARGGDAGQPPDDDVLARHVEPDAVLVPPALHGHAVVAGDDVAVLDLDTRGRIRVN 262

The following BLAST results are available for this feature:
BLAST of CmoCh02G010980 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh02G010980 vs. TrEMBL
Match NameE-valueIdentityDescription
C0PCU3_MAIZE2.1e-0734.17Uncharacterized protein OS=Zea mays PE=2 SV=1[more]
BLAST of CmoCh02G010980 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmoCh02G010980 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|223975601|gb|ACN31988.1|3.0e-0734.17unknown [Zea mays][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh02G010980.1CmoCh02G010980.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh02G010980Cucumber (Gy14) v1cgycmoB0250
CmoCh02G010980Cucumber (Gy14) v1cgycmoB0564
CmoCh02G010980Cucurbita maxima (Rimu)cmacmoB260
CmoCh02G010980Cucurbita maxima (Rimu)cmacmoB299
CmoCh02G010980Cucurbita maxima (Rimu)cmacmoB333
CmoCh02G010980Cucurbita maxima (Rimu)cmacmoB416
CmoCh02G010980Cucurbita maxima (Rimu)cmacmoB619
CmoCh02G010980Wild cucumber (PI 183967)cmocpiB589
CmoCh02G010980Wild cucumber (PI 183967)cmocpiB611
CmoCh02G010980Cucumber (Chinese Long) v2cmocuB583
CmoCh02G010980Cucumber (Chinese Long) v2cmocuB603
CmoCh02G010980Melon (DHL92) v3.5.1cmomeB515
CmoCh02G010980Melon (DHL92) v3.5.1cmomeB567
CmoCh02G010980Watermelon (Charleston Gray)cmowcgB520
CmoCh02G010980Watermelon (Charleston Gray)cmowcgB557
CmoCh02G010980Watermelon (Charleston Gray)cmowcgB560
CmoCh02G010980Watermelon (97103) v1cmowmB558
CmoCh02G010980Watermelon (97103) v1cmowmB567
CmoCh02G010980Cucurbita pepo (Zucchini)cmocpeB546
CmoCh02G010980Cucurbita pepo (Zucchini)cmocpeB551
CmoCh02G010980Cucurbita pepo (Zucchini)cmocpeB557
CmoCh02G010980Cucurbita pepo (Zucchini)cmocpeB589
CmoCh02G010980Cucurbita pepo (Zucchini)cmocpeB595
CmoCh02G010980Bottle gourd (USVL1VR-Ls)cmolsiB520
CmoCh02G010980Bottle gourd (USVL1VR-Ls)cmolsiB557
CmoCh02G010980Bottle gourd (USVL1VR-Ls)cmolsiB567
CmoCh02G010980Cucumber (Gy14) v2cgybcmoB372
CmoCh02G010980Cucumber (Gy14) v2cgybcmoB498
CmoCh02G010980Cucumber (Gy14) v2cgybcmoB618
CmoCh02G010980Melon (DHL92) v3.6.1cmomedB591
CmoCh02G010980Melon (DHL92) v3.6.1cmomedB649
CmoCh02G010980Melon (DHL92) v3.6.1cmomedB653
CmoCh02G010980Melon (DHL92) v3.6.1cmomedB656
CmoCh02G010980Silver-seed gourdcarcmoB0971
CmoCh02G010980Silver-seed gourdcarcmoB1329
CmoCh02G010980Cucumber (Chinese Long) v3cmocucB0697
CmoCh02G010980Cucumber (Chinese Long) v3cmocucB0707
CmoCh02G010980Cucumber (Chinese Long) v3cmocucB0715
CmoCh02G010980Cucumber (Chinese Long) v3cmocucB0723
CmoCh02G010980Watermelon (97103) v2cmowmbB580
CmoCh02G010980Watermelon (97103) v2cmowmbB621
CmoCh02G010980Watermelon (97103) v2cmowmbB625
CmoCh02G010980Wax gourdcmowgoB0715
CmoCh02G010980Cucurbita moschata (Rifu)cmocmoB212
CmoCh02G010980Cucurbita moschata (Rifu)cmocmoB251
CmoCh02G010980Cucurbita moschata (Rifu)cmocmoB281
CmoCh02G010980Cucurbita moschata (Rifu)cmocmoB333