CmoCh02G010730 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh02G010730
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionMitochondrial transcription termination factor family protein
LocationCmo_Chr02 : 6551488 .. 6553692 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTCGTCCAAGGCAAGTTGCCCATGACAAGCCCAACCCTTTATGTCGTGTTTTACTTTTGTATTTCTAGGAAGTATGACGTTTCAGAAATATCATGTCTAGGCCTGTCAGACATGAAATGTCTCAGAATGTACTGTAGGGAGATACGACTAGTTGTCAACTTCTCCCTACCCAAGGTTATATACTGTAAGCCGTTGTTATTTATCTCTTGCTTGCTTATATAACGTCTCTTTCAAAAATTTCTCTCTGCCCTCGTTTTCTAAAACCTTCTCTTAAAACTGAGGCCAGAGGCTCGAGCATACGTCGCTTAGCCGTAGGCGACGCAAGAACGAATTGGCTTAGCTCACTTGTCGTTGGAAAGTGAGTGCCGCACAATCGCAAGTCTGCTGCCATTAAAAGTGTGATTGTGACACTGAGGCCCCAGGCGGTGGATTAGAGGTCCCACATTGGTTGGAGAGGGGAATGAATGCATTTTACAACTATGAGGCTGACAGGGATCCGTAACAGGCCAAAACAGATAATGTCTGCTAGCGGTGGGCTGTTACAAACAATATCAAAACCAAACACGGGACAGTGTGTCAATGAGGATGCTGGTCTCTCGTGGATTTTGAGATTCTACATTGATTAGAAAGAAGAATGAACGCGTTTTAAATTGTGGGGCTAATGTCTATACATAACAGGCAAAAGCAAACAATATCTGATAGGTTTTTAATCGAAACCGGAAGAATTTAGTTTATTCGATTTAAAAACTTTAAAGAACAAGGTGTTTGTCACTAATTTTAACCTAAATAAATGAATCAAAGTAAACCGTACTTAGCTTAGAACCGTATAAAAAGAATATAGAATAGACATTCAAAACCCCTTTTAATTAAATTTCACAAACTCCCTCCATGGGGAAACCCTAGCGGTCTCCCGCTTCGTCGTAGCACCTTAGCTTAGTAATTTGGTCGGCCAATCCATGATGTTGAGCGATAATCGGCAACAGTCCATGGCATTGCATTGAGTATCCTAAAATGTTCCGAATTTCAGGGCTTAAAGTCTTAAGTTCTGGCAGGAGGTTGCAGTCACCACCTCTTTCTTCGGCAATCTAGGGTTTCATCGGGACGCCTTATTAAGCTTCAAATTCTTCTCAGTTCTTCCCAGCAATGCATCGTTTGGATCTTTGAAAGATGAGTGTATACATTCTTTCACAGTCTCATACCTCGTCAATTCATGCGGAATGCCATTACAGACTGCTCTGGATGTGGCTTCCAAGGTAAAGTTCAAAACTCCGAAAAACCCTGATATAGTTCTTTCGCTTCTCCGAACTCAAGGATTCACCAAATCTCAGATTTCGAAAATTGTTAAGCAATTCCCGAGACTGCTGTTTTTTTAACTCTGATAGAACTCTTTTGCCCAAATTTGAATTTCTGCATTCCATTGGGCTCTCCAAGTCAGAATGTGTTCAGATTGTATATTCATGCCCGTTTCTTTTGGGGAGTAGCGTGAAAAACCATTTAATTCCCTGTTACAACTACCTTAAATCTGTGCTTGTTGTAGATGAAAAGGTCATCAAATGTTTGAAGCGTTCACCAAGGGCATTTCGTCAGGTTTTTCCAGACAAAATTGCACCCAACATTGAATTGTTACGAACTTCTGGAGTTTCTGATGTTTTGATTTCATCTTTGGTTTCGAATGTTCCTGATTCAGCATTCCGTAGGCATTCCAAATTCCGCAGCATTGTTAACCAAGTTAGGGATATGGGATTCGACCCTTCAAAAGTTGTGTTTGTTGAGGCCATTAGAGTGCTCTCTGGGATGAGTTCTCTCACCTGGGAAAGAAAATTTAAAGCTTACAGTAAGTATGGTTGGTCAAAGGATCAGACCCTCTTAGCTTTTAAGAAGTTTCCACCATGTTTGAGTGTTTCTGAAGAGAAGATCTTCAAGAACATGGACTTTTTTGTGCACAAAATGGGTTTGATGGCAGTGGATATTGCTACAAAACCCACTGTGATGGTCTTTAGTTTGGAGAAGAGGATAATACCAAGGTGTTCTGTTGTCCAAAGTCTGTATTCAAAAGGTTTATTAAAGAAAGAATTGAGCATCGCTAGCATCTTACATCCTACAGAAAAGACTTTCCTGGAGAAGTATGTGACCAAGTTTCCTAAAGATGCTACTTGGCTGTTGCATTTGTATACTGGAGAGGTCAAAATCTTTGATGTCTAA

mRNA sequence

ATGCTCGTCCAAGGCAAGTTGCCCATGACAAGCCCAACCCTTTATGTCGTGTTTTACTTTTGTATTTCTAGGAAGTATGACGTTTCAGAAATATCATGTCTAGGCCTGTCAGACATGAAATGTCTCAGAATGTACTGTAGGGAGATACGACTAGTTGTCAACTTCTCCCTACCCAAGGAGGTTGCAGTCACCACCTCTTTCTTCGGCAATCTAGGGTTTCATCGGGACGCCTTATTAAGCTTCAAATTCTTCTCAGTTCTTCCCAGCAATGCATCGTTTGGATCTTTGAAAGATGAGTGTATACATTCTTTCACAGTCTCATACCTCGTCAATTCATGCGGAATGCCATTACAGACTGCTCTGGATGTGGCTTCCAAGGTCATCAAATGTTTGAAGCGTTCACCAAGGGCATTTCGTCAGGTTTTTCCAGACAAAATTGCACCCAACATTGAATTGTTACGAACTTCTGGAGTTTCTGATGTTTTGATTTCATCTTTGGTTTCGAATGTTCCTGATTCAGCATTCCGTAGGCATTCCAAATTCCGCAGCATTGTTAACCAAGTTAGGGATATGGGATTCGACCCTTCAAAAGTTGTGTTTGTTGAGGCCATTAGAGTGCTCTCTGGGATGAGTTCTCTCACCTGGGAAAGAAAATTTAAAGCTTACAGTAAGTATGGTTGGTCAAAGGATCAGACCCTCTTAGCTTTTAAGAAGTTTCCACCATGTTTGAGTGTTTCTGAAGAGAAGATCTTCAAGAACATGGACTTTTTTGTGCACAAAATGGGTTTGATGGCAGTGGATATTGCTACAAAACCCACTGTGATGGTCTTTAGTTTGGAGAAGAGGATAATACCAAGGTGTTCTGTTGTCCAAAGTCTGTATTCAAAAGGTTTATTAAAGAAAGAATTGAGCATCGCTAGCATCTTACATCCTACAGAAAAGACTTTCCTGGAGAAGTATGTGACCAAGTTTCCTAAAGATGCTACTTGGCTGTTGCATTTGTATACTGGAGAGGTCAAAATCTTTGATGTCTAA

Coding sequence (CDS)

ATGCTCGTCCAAGGCAAGTTGCCCATGACAAGCCCAACCCTTTATGTCGTGTTTTACTTTTGTATTTCTAGGAAGTATGACGTTTCAGAAATATCATGTCTAGGCCTGTCAGACATGAAATGTCTCAGAATGTACTGTAGGGAGATACGACTAGTTGTCAACTTCTCCCTACCCAAGGAGGTTGCAGTCACCACCTCTTTCTTCGGCAATCTAGGGTTTCATCGGGACGCCTTATTAAGCTTCAAATTCTTCTCAGTTCTTCCCAGCAATGCATCGTTTGGATCTTTGAAAGATGAGTGTATACATTCTTTCACAGTCTCATACCTCGTCAATTCATGCGGAATGCCATTACAGACTGCTCTGGATGTGGCTTCCAAGGTCATCAAATGTTTGAAGCGTTCACCAAGGGCATTTCGTCAGGTTTTTCCAGACAAAATTGCACCCAACATTGAATTGTTACGAACTTCTGGAGTTTCTGATGTTTTGATTTCATCTTTGGTTTCGAATGTTCCTGATTCAGCATTCCGTAGGCATTCCAAATTCCGCAGCATTGTTAACCAAGTTAGGGATATGGGATTCGACCCTTCAAAAGTTGTGTTTGTTGAGGCCATTAGAGTGCTCTCTGGGATGAGTTCTCTCACCTGGGAAAGAAAATTTAAAGCTTACAGTAAGTATGGTTGGTCAAAGGATCAGACCCTCTTAGCTTTTAAGAAGTTTCCACCATGTTTGAGTGTTTCTGAAGAGAAGATCTTCAAGAACATGGACTTTTTTGTGCACAAAATGGGTTTGATGGCAGTGGATATTGCTACAAAACCCACTGTGATGGTCTTTAGTTTGGAGAAGAGGATAATACCAAGGTGTTCTGTTGTCCAAAGTCTGTATTCAAAAGGTTTATTAAAGAAAGAATTGAGCATCGCTAGCATCTTACATCCTACAGAAAAGACTTTCCTGGAGAAGTATGTGACCAAGTTTCCTAAAGATGCTACTTGGCTGTTGCATTTGTATACTGGAGAGGTCAAAATCTTTGATGTCTAA
Homology
[Close]
BLAST of CmoCh02G010730 vs. TrEMBL
Match: B9S3U4_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0555350 PE=4 SV=1)

HSP 1 Score: 204.1 bits (518), Expect = 2.7e-49
Identity = 97/226 (42.92%), Postives = 152/226 (67.26%), Query Frame = 1 

Query: 117 LQTALDVASKVIKCLKRSPRAFRQVFPDKIAPNIELLRTSGVSDVLISSLVSNVPDSAFR 176
           L++ L    K++  LKR+   F + +   + PN+E LR  GV+   IS L++N P++  +
Sbjct: 148 LKSILLSNEKIVSALKRTTWIFLEDYSKNLMPNVERLREIGVTHSCISLLLTNFPEAVLQ 207

Query: 177 RHSKFRSIVNQVRDMGFDPSKVVFVEAIRVLSGMSSLT-WERKFKAYSKYGWSKDQTLLA 236
           RH +F  +V +V++MGFDP K +FV A+  +SG S+   W + F+ Y ++ WSKD    A
Sbjct: 208 RHGEFNKVVKEVKEMGFDPKKSIFVMAVHAISGKSNKAIWNKCFEVYKRWDWSKDDIFAA 267

Query: 237 FKKFPPCLSVSEEKIFKNMDFFVHKMGLMAVDIATKPTVMVFSLEKRIIPRCSVVQSLYS 296
           FKK P C+ +SE+KI   MDFFV+KMGL +  IA  P ++ FSLEKRI+PRC V++ L +
Sbjct: 268 FKKHPHCMMLSEKKIMLAMDFFVNKMGLPSKVIAQCPVLLFFSLEKRIVPRCRVIRVLMN 327

Query: 297 KGLLKKELSIASILHPTEKTFLEKYVTKFPKDATWLLHLYTGEVKI 342
           KGL+KK++S+A++L PTEK FL+++V K+ ++   LL +Y G++ +
Sbjct: 328 KGLVKKDVSLATVLVPTEKCFLDRFVIKYEEEVPLLLRVYEGKIDV 373

[Close]
BLAST of CmoCh02G010730 vs. TrEMBL
Match: B9I9V1_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0014s12770g PE=4 SV=2)

HSP 1 Score: 201.8 bits (512), Expect = 1.3e-48
Identity = 100/224 (44.64%), Postives = 146/224 (65.18%), Query Frame = 1 

Query: 117 LQTALDVASKVIKCLKRSPRAFRQVFPDKIAPNIELLRTSGVSDVLISSLVSNVPDSAFR 176
           L+T L    K++   KR+   F +     + PN+ELLR  GV    IS L+++ P++   
Sbjct: 172 LKTILRSDEKIVSAFKRTTWIFLEDLSKNLIPNLELLRKVGVPQSCISLLLTHFPEAMME 231

Query: 177 RHSKFRSIVNQVRDMGFDPSKVVFVEAIRVLSGMSSLT-WERKFKAYSKYGWSKDQTLLA 236
            H +F   V +VR MGFDP+K  FV A+  L G  + + WER F+ Y ++GW+KD  L A
Sbjct: 232 NHEEFSENVEEVRKMGFDPNKSTFVLAVHALCGKCNKSIWERCFEVYERWGWTKDDILSA 291

Query: 237 FKKFPPCLSVSEEKIFKNMDFFVHKMGLMAVDIATKPTVMVFSLEKRIIPRCSVVQSLYS 296
           F+K P C+ +SE+KI K +DFFV+KMG  + +I   P ++  SLEKRIIPRC V+Q L+S
Sbjct: 292 FRKHPHCMMLSEKKIMKGLDFFVNKMGWPSKEIVHCPVILFLSLEKRIIPRCKVIQVLWS 351

Query: 297 KGLLKKELSIASILHPTEKTFLEKYVTKFPKDATWLLHLYTGEV 340
           KGL+KK++S+ ++L P EK FLE++VTKF ++   LL +Y G+V
Sbjct: 352 KGLIKKDISLNTVLLPVEKRFLERFVTKFEEEVPQLLSVYEGKV 395

[Close]
BLAST of CmoCh02G010730 vs. TrEMBL
Match: V4V2V5_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10003730mg PE=4 SV=1)

HSP 1 Score: 199.9 bits (507), Expect = 5.0e-48
Identity = 118/293 (40.27%), Postives = 173/293 (59.04%), Query Frame = 1 

Query: 52  VVNFSLPKEVAVTTSFFGNLGFHRDALLSFKFFSVLPSNASFGSLKDECIHSFTVSYLVN 111
           ++  +  + +     FFG++G   D L   K  S  P   +  SLK+    ++       
Sbjct: 112 IIALNCERNLLPKIEFFGSIGVLSDDLP--KLISSTPHLLAV-SLKNRLSPNYNF----- 171

Query: 112 SCGMPLQTALDVASKVIKCLKRSPRAFRQVFPDKIAPNIELLRTSGVSDVLISSLVSNVP 171
                L+  + +   V++ +KR   AF + F   +APNI  LR  GV    IS+ V + P
Sbjct: 172 -----LKNIVVLDEVVVRVMKRMKWAFLRDFNSNLAPNIAFLREIGVPASNISNFVISNP 231

Query: 172 DSAFRRHSKFRSIVNQVRDMGFDPSKVVFVEAIRVLSGMSSLTWERKFKAYSKYGWSKDQ 231
             A    SKF  IVN+V+ MGF+P + +F++AI V+  M++L WE K + Y ++GWSKD+
Sbjct: 232 CGASIIPSKFYEIVNKVKAMGFNPLRGMFLKAIEVIGQMTTLNWESKIEVYRRWGWSKDE 291

Query: 232 TLLAFKKFPPCLSVSEEKIFKNMDFFVHKMGLMAVDIATKPTVMVFSLEKRIIPRCSVVQ 291
           TL AF++ P C+ +SEEKI K MDFFV+KMG ++ DIA +P ++++SLEKRI+PRCSVVQ
Sbjct: 292 TLNAFRRHPYCMRISEEKITKTMDFFVNKMGWLSQDIAKRPEILLYSLEKRIVPRCSVVQ 351

Query: 292 SLYSKGLLKKELSIASILHPTEKTFLEKYVTKFPKDATWLLHLYTGEVKIFDV 345
            L SKGL+KK+L   S+L   E  F   YVTKF      LL+LY  E+ + D+
Sbjct: 352 VLLSKGLIKKDLCPCSLLVLGETQFKGSYVTKFQVKVPQLLNLYEEEMNLPDL 391

[Close]
BLAST of CmoCh02G010730 vs. TrEMBL
Match: V4SZA8_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10001326mg PE=4 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 6.6e-48
Identity = 118/293 (40.27%), Postives = 173/293 (59.04%), Query Frame = 1 

Query: 52  VVNFSLPKEVAVTTSFFGNLGFHRDALLSFKFFSVLPSNASFGSLKDECIHSFTVSYLVN 111
           ++  +  + +     FFG++G   D L   K  S  P   +  SLK+    ++       
Sbjct: 113 IIALNCERNLLPKIEFFGSIGVLSDDLP--KLISSTPHLLAV-SLKNRLSPNYNF----- 172

Query: 112 SCGMPLQTALDVASKVIKCLKRSPRAFRQVFPDKIAPNIELLRTSGVSDVLISSLVSNVP 171
                L+  + +   V++ +KR   AF + F   +APNI  LR  GV    IS+ V + P
Sbjct: 173 -----LKNIVVLDEVVVRVMKRMKWAFLRDFNSNLAPNIAFLREIGVPASNISNFVISNP 232

Query: 172 DSAFRRHSKFRSIVNQVRDMGFDPSKVVFVEAIRVLSGMSSLTWERKFKAYSKYGWSKDQ 231
             A    SKF  IVN+V+ MGF+P + +F++AI V+  M++L WE K + Y ++GWSKD+
Sbjct: 233 CGASIIPSKFCEIVNKVKAMGFNPLRGMFLKAIEVIGQMTTLNWESKIEVYRRWGWSKDE 292

Query: 232 TLLAFKKFPPCLSVSEEKIFKNMDFFVHKMGLMAVDIATKPTVMVFSLEKRIIPRCSVVQ 291
           TL AF++ P C+ +SEEKI K MDFFV+KMG ++ DIA +P ++++SLEKRI+PRCSVVQ
Sbjct: 293 TLNAFRRHPYCMRISEEKITKTMDFFVNKMGWLSQDIAKRPEILLYSLEKRIVPRCSVVQ 352

Query: 292 SLYSKGLLKKELSIASILHPTEKTFLEKYVTKFPKDATWLLHLYTGEVKIFDV 345
            L SKGL+KK+L   S+L   E  F   YVTKF      LL+LY  E+ + D+
Sbjct: 353 VLLSKGLIKKDLCPCSLLVLGETKFKGSYVTKFQVKVPQLLNLYEEEMNLPDL 392

[Close]
BLAST of CmoCh02G010730 vs. TrEMBL
Match: B9S3U5_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0555360 PE=4 SV=1)

HSP 1 Score: 196.8 bits (499), Expect = 4.2e-47
Identity = 99/223 (44.39%), Postives = 148/223 (66.37%), Query Frame = 1 

Query: 117 LQTALDVASKVIKCLKRSPRAFRQVFPDKIAPNIELLRTSGVSDVLISSLVSNVPDSAFR 176
           L++ L    K++  LKR+   F +     + PNIELLR +GV    IS L+++ P++  +
Sbjct: 173 LKSILLSDEKIVSALKRTTWIFLEDHSKNLIPNIELLREAGVLHSCISLLLTHFPEALMQ 232

Query: 177 RHSKFRSIVNQVRDMGFDPSKVVFVEAIRVLSGMSSLT-WERKFKAYSKYGWSKDQTLLA 236
           RH KF  IV +VR+M FDP K  FV A+  +SG  + + W + F+ Y ++GWSKD    A
Sbjct: 233 RHDKFSKIVKEVREMEFDPKKSTFVLAVHAISGKGNKSIWNKCFEVYMRWGWSKDDIFAA 292

Query: 237 FKKFPPCLSVSEEKIFKNMDFFVHKMGLMAVDIATKPTVMVFSLEKRIIPRCSVVQSLYS 296
           FKK P C+ +SE+KI K MDFFV+KMG  +  IA  P V+ FSLEKRI+PRC V++ L +
Sbjct: 293 FKKHPHCMMLSEKKIMKAMDFFVNKMGFPSKVIAQCPVVLFFSLEKRIVPRCRVIRVLMN 352

Query: 297 KGLLKKELSIASILHPTEKTFLEKYVTKFPKDATWLLHLYTGE 339
           K L+K+++S+AS+L P E+ FL+++VT+F ++   LL +Y G+
Sbjct: 353 KRLVKEDVSLASVLLPVEQCFLDRFVTRFAEEIPRLLSVYEGK 395

[Close]
BLAST of CmoCh02G010730 vs. TAIR10
Match: AT5G07900.1 (AT5G07900.1 Mitochondrial transcription termination factor family protein)

HSP 1 Score: 183.7 bits (465), Expect = 1.9e-46
Identity = 90/226 (39.82%), Postives = 145/226 (64.16%), Query Frame = 1 

Query: 117 LQTALDVASKVIKCLKRSPRAFRQVFPDKIAPNIELLRTSGVSDVLISSLVSNVPDSAFR 176
           L++ LD   K++  L+R+   F +     + PNI  +  +GV +  I  L+++ P++  +
Sbjct: 180 LKSVLDSDEKIVAALRRTTWVFLEDHTKNLVPNINYMAETGVPEKCIKLLLTHFPEAVMQ 239

Query: 177 RHSKFRSIVNQVRDMGFDPSKVVFVEAIRVLSGMSSLT-WERKFKAYSKYGWSKDQTLLA 236
           ++ +F++I  Q ++MGF+P K  FV AI  LSG  + + W++ F+ Y ++GWS+D  + A
Sbjct: 240 KNHEFQAIAKQAQEMGFNPQKSTFVLAIHALSGKGNKSIWDKCFEVYQRWGWSEDDIMCA 299

Query: 237 FKKFPPCLSVSEEKIFKNMDFFVHKMGLMAVDIATKPTVMVFSLEKRIIPRCSVVQSLYS 296
           FKK P C+ +SE KI + M++FV++M +    IA  P V+ FSLEKRIIPRCSV + L S
Sbjct: 300 FKKHPHCMMLSERKINRTMEYFVNEMNMAPRSIAQCPVVLFFSLEKRIIPRCSVTKVLVS 359

Query: 297 KGLLKKELSIASILHPTEKTFLEKYVTKFPKDATWLLHLYTGEVKI 342
            GL+K++ S+ S+L P EK FLEK V K+ ++   L++LY G  K+
Sbjct: 360 NGLVKEDWSLTSLLVPVEKVFLEKLVIKYEEELPELMNLYLGCTKL 405

[Close]
BLAST of CmoCh02G010730 vs. TAIR10
Match: AT1G21150.1 (AT1G21150.1 Mitochondrial transcription termination factor family protein)

HSP 1 Score: 150.2 bits (378), Expect = 2.3e-36
Identity = 94/286 (32.87%), Postives = 145/286 (50.70%), Query Frame = 1 

Query: 52  VVNFSLPKEVAVTTSFFGNLGFHRDALLSFKFFSVLPSNASFGSLKDECIHSFTVSYLVN 111
           V++ S    ++    FF ++GF      + K  S  P   S+       +H   +     
Sbjct: 115 VLSLSPEDVISPKLMFFSSIGFSTSD--TAKMISSSPKMLSYS------LHKRLIP---- 174

Query: 112 SCGMPLQTALDVASKVIKCLKRSPRAFRQVFPDKIAPNIELLRTSGVSDVLISSLVSNVP 171
            C   L++ L     V+KCLKR  R F       ++  + + R  GV D  I  LV   P
Sbjct: 175 -CYDSLKSILVEEESVVKCLKRGIRCFSLKITHCVSLRVSICRELGVPDKSIKWLVQASP 234

Query: 172 DSAFRRHSKFRSIVNQVRDMGFDPSKVVFVEAIRVLSGMSSLTWERKFKAYSKYGWSKDQ 231
            + F R  +F  ++N+V   GFDP K  FV A+      S    ERKFK +  +GWSK+ 
Sbjct: 235 FTFFSRERRFNEVLNRVCSYGFDPKKAGFVHAMVAFDCTSESAMERKFKLFQCFGWSKED 294

Query: 232 TLLAFKKFPPCLSVSEEKIFKNMDFFVHKMGLMAVDIATKPTVMVFSLEKRIIPRCSVVQ 291
            + A  +FP C++VS+EKI   +++ V+ +GL A DI  +P V+  S+EKRI PR  V+ 
Sbjct: 295 FVAAIMRFPNCVTVSDEKIMYTLEYLVNNIGLQARDIVARPVVLSLSMEKRIKPRNQVIS 354

Query: 292 SLYSKGLLKKE-LSIASILHPTEKTFLEKYVTKFPKDATWLLHLYT 337
            L SKGL+KKE ++  +IL      F++K+V K+  +   L+  +T
Sbjct: 355 LLLSKGLVKKEDINYFTILKLKSSEFMDKFVLKYQDEMPQLVQPFT 387

[Close]
BLAST of CmoCh02G010730 vs. TAIR10
Match: AT5G64950.1 (AT5G64950.1 Mitochondrial transcription termination factor family protein)

HSP 1 Score: 115.2 bits (287), Expect = 8.2e-26
Identity = 68/198 (34.34%), Postives = 108/198 (54.55%), Query Frame = 1 

Query: 131 LKRSPRAFRQVFPDKIAPNIELLRTSGVSDVLISSLVSNVPDSAFRRHSKFRSIVNQVRD 190
           L R P  F       + PNI  L T G+    ++SL+   P        K R  V++  D
Sbjct: 173 LSRDPNLF-------LLPNISYLETCGIVGSQLASLLRRQPRIFNLSEEKLRGYVSRALD 232

Query: 191 MGFDPSKVVFVEAIRVLSGMSSLTWERKFKAYSKYGWSKDQTLLAFKKFPPCLSVSEEKI 250
           +GF  +  + V A+  LS +S  T++RK K +   G+S+D+     ++ P  +  SE+K+
Sbjct: 233 LGFTLNSRMLVHAVISLSSLSEKTFDRKVKLFMANGFSEDEITDIIRRSPGLIRCSEDKL 292

Query: 251 FKNMDFFVHKMGLMAVDIATKPTVMVFSLEKRIIPRCSVVQSLYSKGLL----KKELSIA 310
               +F++ +MGL    +A +P V+ ++LEKR+IPR  V+Q L  KGLL    KK+ ++ 
Sbjct: 293 TLGFEFYLKRMGLEREALAKRPCVLSYNLEKRVIPRLKVLQILREKGLLLKEEKKKKNMV 352

Query: 311 SILHPTEKTFLEKYVTKF 325
            I+  TE+ FLEKYV +F
Sbjct: 353 GIVEMTEEAFLEKYVVRF 363

[Close]
BLAST of CmoCh02G010730 vs. TAIR10
Match: AT1G61980.1 (AT1G61980.1 Mitochondrial transcription termination factor family protein)

HSP 1 Score: 93.6 bits (231), Expect = 2.6e-19
Identity = 74/242 (30.58%), Postives = 116/242 (47.93%), Query Frame = 1 

Query: 118 QTALDVASKVIKCLKRSPRAFRQVFPDKIAPNIELLRTSGVSDVLISSLVSNVPDSAFRR 177
           +T LD +SK  K  +  P+   +   +KI  N+ +LR  G+   L+  L+ +     F +
Sbjct: 165 ETLLDKSSKSEKSCQPFPQGNLE---NKIR-NLSVLRELGMPHKLLFPLLISCDVPVFGK 224

Query: 178 HSKFRSIVNQVRDMGFDPSKVVFVEAIRVLSGMSSLTWERKFKAYSKYGWSKDQTLLAFK 237
             KF   + +V +MGFDPS   FVEA+ V+  +S    E K  AY + G+  +     FK
Sbjct: 225 E-KFEESLKKVVEMGFDPSTSKFVEALCVVQRLSDKNIEDKVNAYKRLGFDVEYVWTVFK 284

Query: 238 KFPPCLSVSEEKIFKNM-----------------------------------DFFVHKMG 297
           ++P  L+ SE+KI   +                                   +F V KM 
Sbjct: 285 RWPNFLTHSEKKILNTIETFLGLGFSRDEFSVLIKRFPQGIGLSAEMVKKKTEFLVKKMN 344

Query: 298 LMAVDIATKPTVMVFSLEKRIIPRCSVVQSLYSKGLLKKEL-SIASILHPTEKTFLEKYV 324
                + + P V+ +SLEKR +PR +VVQ+L SKGL+  EL SI+ +   T++ FL +YV
Sbjct: 345 WPLKALVSNPAVLGYSLEKRTVPRGNVVQALISKGLIGSELPSISRVFVCTDQVFLNRYV 401

[Close]
BLAST of CmoCh02G010730 vs. TAIR10
Match: AT1G62010.1 (AT1G62010.1 Mitochondrial transcription termination factor family protein)

HSP 1 Score: 86.3 bits (212), Expect = 4.1e-17
Identity = 43/99 (43.43%), Postives = 67/99 (67.68%), Query Frame = 1 

Query: 226 GWSKDQTLLAFKKFPPCLSVSEEKIFKNMDFFVHKMGLMAVDIATKPTVMVFSLEKRIIP 285
           G+S+D  ++ FK+FPPC+  S E + K  +F V +M      +A+ P V+ +SLEKR +P
Sbjct: 287 GFSRDVFMMMFKRFPPCIGYSTEAVKKKTEFLVKEMNWPVKAVASIPQVLGYSLEKRTVP 346

Query: 286 RCSVVQSLYSKGLLKKEL-SIASILHPTEKTFLEKYVTK 324
           RC+V++ L SKGLL+ EL  ++S+L  T ++FL  YV+K
Sbjct: 347 RCNVIKVLMSKGLLESELPPMSSVLTSTSESFLNLYVSK 385

[Close]
BLAST of CmoCh02G010730 vs. NCBI nr
Match: gi|255559286|ref|XP_002520663.1| (PREDICTED: uncharacterized protein LOC8287161 [Ricinus communis])

HSP 1 Score: 204.1 bits (518), Expect = 3.8e-49
Identity = 97/226 (42.92%), Postives = 152/226 (67.26%), Query Frame = 1 

Query: 117 LQTALDVASKVIKCLKRSPRAFRQVFPDKIAPNIELLRTSGVSDVLISSLVSNVPDSAFR 176
           L++ L    K++  LKR+   F + +   + PN+E LR  GV+   IS L++N P++  +
Sbjct: 148 LKSILLSNEKIVSALKRTTWIFLEDYSKNLMPNVERLREIGVTHSCISLLLTNFPEAVLQ 207

Query: 177 RHSKFRSIVNQVRDMGFDPSKVVFVEAIRVLSGMSSLT-WERKFKAYSKYGWSKDQTLLA 236
           RH +F  +V +V++MGFDP K +FV A+  +SG S+   W + F+ Y ++ WSKD    A
Sbjct: 208 RHGEFNKVVKEVKEMGFDPKKSIFVMAVHAISGKSNKAIWNKCFEVYKRWDWSKDDIFAA 267

Query: 237 FKKFPPCLSVSEEKIFKNMDFFVHKMGLMAVDIATKPTVMVFSLEKRIIPRCSVVQSLYS 296
           FKK P C+ +SE+KI   MDFFV+KMGL +  IA  P ++ FSLEKRI+PRC V++ L +
Sbjct: 268 FKKHPHCMMLSEKKIMLAMDFFVNKMGLPSKVIAQCPVLLFFSLEKRIVPRCRVIRVLMN 327

Query: 297 KGLLKKELSIASILHPTEKTFLEKYVTKFPKDATWLLHLYTGEVKI 342
           KGL+KK++S+A++L PTEK FL+++V K+ ++   LL +Y G++ +
Sbjct: 328 KGLVKKDVSLATVLVPTEKCFLDRFVIKYEEEVPLLLRVYEGKIDV 373

[Close]
BLAST of CmoCh02G010730 vs. NCBI nr
Match: gi|743870476|ref|XP_011033588.1| (PREDICTED: uncharacterized protein LOC105132030 [Populus euphratica])

HSP 1 Score: 203.0 bits (515), Expect = 8.5e-49
Identity = 101/224 (45.09%), Postives = 147/224 (65.62%), Query Frame = 1 

Query: 117 LQTALDVASKVIKCLKRSPRAFRQVFPDKIAPNIELLRTSGVSDVLISSLVSNVPDSAFR 176
           L+T L    K++   KR+   F +     + PN+ELLR  GV    IS L+++ P++   
Sbjct: 172 LKTILRSDEKIVSAFKRTTWIFLEDHSKNLIPNLELLRKLGVPHSCISLLLTHFPEAMME 231

Query: 177 RHSKFRSIVNQVRDMGFDPSKVVFVEAIRVLSGMSSLT-WERKFKAYSKYGWSKDQTLLA 236
            H +F   V +VR MGFDP+K  FV A+  L G  + + WER F+ Y ++GW+KD  L A
Sbjct: 232 SHEEFSENVEEVRKMGFDPNKSTFVLAVHALCGKCNKSIWERCFEVYKRWGWTKDDILSA 291

Query: 237 FKKFPPCLSVSEEKIFKNMDFFVHKMGLMAVDIATKPTVMVFSLEKRIIPRCSVVQSLYS 296
           F+K P C+ +SE+KI K MDFFV+KMG  + +I   P ++  SLEKRIIPRC V+Q L+S
Sbjct: 292 FRKHPHCMMLSEKKIMKGMDFFVNKMGWPSKEIVHCPVILFLSLEKRIIPRCKVIQVLWS 351

Query: 297 KGLLKKELSIASILHPTEKTFLEKYVTKFPKDATWLLHLYTGEV 340
           KGL+KK++S+ ++L P EK FLE++VTKF ++   LL++Y G+V
Sbjct: 352 KGLIKKDISLNTVLLPVEKRFLERFVTKFEEEVPQLLNIYEGKV 395

[Close]
BLAST of CmoCh02G010730 vs. NCBI nr
Match: gi|566204002|ref|XP_002321027.2| (hypothetical protein POPTR_0014s12770g [Populus trichocarpa])

HSP 1 Score: 201.8 bits (512), Expect = 1.9e-48
Identity = 100/224 (44.64%), Postives = 146/224 (65.18%), Query Frame = 1 

Query: 117 LQTALDVASKVIKCLKRSPRAFRQVFPDKIAPNIELLRTSGVSDVLISSLVSNVPDSAFR 176
           L+T L    K++   KR+   F +     + PN+ELLR  GV    IS L+++ P++   
Sbjct: 172 LKTILRSDEKIVSAFKRTTWIFLEDLSKNLIPNLELLRKVGVPQSCISLLLTHFPEAMME 231

Query: 177 RHSKFRSIVNQVRDMGFDPSKVVFVEAIRVLSGMSSLT-WERKFKAYSKYGWSKDQTLLA 236
            H +F   V +VR MGFDP+K  FV A+  L G  + + WER F+ Y ++GW+KD  L A
Sbjct: 232 NHEEFSENVEEVRKMGFDPNKSTFVLAVHALCGKCNKSIWERCFEVYERWGWTKDDILSA 291

Query: 237 FKKFPPCLSVSEEKIFKNMDFFVHKMGLMAVDIATKPTVMVFSLEKRIIPRCSVVQSLYS 296
           F+K P C+ +SE+KI K +DFFV+KMG  + +I   P ++  SLEKRIIPRC V+Q L+S
Sbjct: 292 FRKHPHCMMLSEKKIMKGLDFFVNKMGWPSKEIVHCPVILFLSLEKRIIPRCKVIQVLWS 351

Query: 297 KGLLKKELSIASILHPTEKTFLEKYVTKFPKDATWLLHLYTGEV 340
           KGL+KK++S+ ++L P EK FLE++VTKF ++   LL +Y G+V
Sbjct: 352 KGLIKKDISLNTVLLPVEKRFLERFVTKFEEEVPQLLSVYEGKV 395

[Close]
BLAST of CmoCh02G010730 vs. NCBI nr
Match: gi|567880711|ref|XP_006432914.1| (hypothetical protein CICLE_v10003730mg [Citrus clementina])

HSP 1 Score: 199.9 bits (507), Expect = 7.2e-48
Identity = 118/293 (40.27%), Postives = 173/293 (59.04%), Query Frame = 1 

Query: 52  VVNFSLPKEVAVTTSFFGNLGFHRDALLSFKFFSVLPSNASFGSLKDECIHSFTVSYLVN 111
           ++  +  + +     FFG++G   D L   K  S  P   +  SLK+    ++       
Sbjct: 112 IIALNCERNLLPKIEFFGSIGVLSDDLP--KLISSTPHLLAV-SLKNRLSPNYNF----- 171

Query: 112 SCGMPLQTALDVASKVIKCLKRSPRAFRQVFPDKIAPNIELLRTSGVSDVLISSLVSNVP 171
                L+  + +   V++ +KR   AF + F   +APNI  LR  GV    IS+ V + P
Sbjct: 172 -----LKNIVVLDEVVVRVMKRMKWAFLRDFNSNLAPNIAFLREIGVPASNISNFVISNP 231

Query: 172 DSAFRRHSKFRSIVNQVRDMGFDPSKVVFVEAIRVLSGMSSLTWERKFKAYSKYGWSKDQ 231
             A    SKF  IVN+V+ MGF+P + +F++AI V+  M++L WE K + Y ++GWSKD+
Sbjct: 232 CGASIIPSKFYEIVNKVKAMGFNPLRGMFLKAIEVIGQMTTLNWESKIEVYRRWGWSKDE 291

Query: 232 TLLAFKKFPPCLSVSEEKIFKNMDFFVHKMGLMAVDIATKPTVMVFSLEKRIIPRCSVVQ 291
           TL AF++ P C+ +SEEKI K MDFFV+KMG ++ DIA +P ++++SLEKRI+PRCSVVQ
Sbjct: 292 TLNAFRRHPYCMRISEEKITKTMDFFVNKMGWLSQDIAKRPEILLYSLEKRIVPRCSVVQ 351

Query: 292 SLYSKGLLKKELSIASILHPTEKTFLEKYVTKFPKDATWLLHLYTGEVKIFDV 345
            L SKGL+KK+L   S+L   E  F   YVTKF      LL+LY  E+ + D+
Sbjct: 352 VLLSKGLIKKDLCPCSLLVLGETQFKGSYVTKFQVKVPQLLNLYEEEMNLPDL 391

[Close]
BLAST of CmoCh02G010730 vs. NCBI nr
Match: gi|568885719|ref|XP_006495397.1| (PREDICTED: uncharacterized protein LOC102617375, partial [Citrus sinensis])

HSP 1 Score: 199.9 bits (507), Expect = 7.2e-48
Identity = 118/293 (40.27%), Postives = 173/293 (59.04%), Query Frame = 1 

Query: 52  VVNFSLPKEVAVTTSFFGNLGFHRDALLSFKFFSVLPSNASFGSLKDECIHSFTVSYLVN 111
           ++  +  + +     FFG++G   D L   K  S  P   +  SLK+    ++       
Sbjct: 4   IIALNCERNLLPKIEFFGSIGVLSDDLP--KLISSTPHLLAV-SLKNRLSPNYNF----- 63

Query: 112 SCGMPLQTALDVASKVIKCLKRSPRAFRQVFPDKIAPNIELLRTSGVSDVLISSLVSNVP 171
                L+  + +   V++ +KR   AF + F   +APNI  LR  GV    IS+ V + P
Sbjct: 64  -----LKNIVVLDEVVVRVMKRMKWAFLRDFNSNLAPNIAFLREIGVPASNISNFVISNP 123

Query: 172 DSAFRRHSKFRSIVNQVRDMGFDPSKVVFVEAIRVLSGMSSLTWERKFKAYSKYGWSKDQ 231
             A    SKF  IVN+V+ MGF+P + +F++AI V+  M++L WE K + Y ++GWSKD+
Sbjct: 124 CGASIIPSKFYEIVNKVKAMGFNPLRGMFLKAIEVIGQMTTLNWESKIEVYRRWGWSKDE 183

Query: 232 TLLAFKKFPPCLSVSEEKIFKNMDFFVHKMGLMAVDIATKPTVMVFSLEKRIIPRCSVVQ 291
           TL AF++ P C+ +SEEKI K MDFFV+KMG ++ DIA +P ++++SLEKRI+PRCSVVQ
Sbjct: 184 TLNAFRRHPYCMRISEEKITKTMDFFVNKMGWLSQDIAKRPEILLYSLEKRIVPRCSVVQ 243

Query: 292 SLYSKGLLKKELSIASILHPTEKTFLEKYVTKFPKDATWLLHLYTGEVKIFDV 345
            L SKGL+KK+L   S+L   E  F   YVTKF      LL+LY  E+ + D+
Sbjct: 244 VLLSKGLIKKDLCPCSLLVLGETKFKGSYVTKFQVKVPQLLNLYEEEMNLPDL 283

The following BLAST results are available for this feature:
BLAST of CmoCh02G010730 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh02G010730 vs. TrEMBL
Match NameE-valueIdentityDescription
B9S3U4_RICCO2.7e-4942.92Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0555350 PE=4 SV=1[more]
B9I9V1_POPTR1.3e-4844.64Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0014s12770g PE=4 SV=2[more]
V4V2V5_9ROSI5.0e-4840.27Uncharacterized protein OS=Citrus clementina GN=CICLE_v10003730mg PE=4 SV=1[more]
V4SZA8_9ROSI6.6e-4840.27Uncharacterized protein OS=Citrus clementina GN=CICLE_v10001326mg PE=4 SV=1[more]
B9S3U5_RICCO4.2e-4744.39Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0555360 PE=4 SV=1[more]
BLAST of CmoCh02G010730 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G07900.11.9e-4639.82 Mitochondrial transcription termination factor family protein[more]
AT1G21150.12.3e-3632.87 Mitochondrial transcription termination factor family protein[more]
AT5G64950.18.2e-2634.34 Mitochondrial transcription termination factor family protein[more]
AT1G61980.12.6e-1930.58 Mitochondrial transcription termination factor family protein[more]
AT1G62010.14.1e-1743.43 Mitochondrial transcription termination factor family protein[more]
BLAST of CmoCh02G010730 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|255559286|ref|XP_002520663.1|3.8e-4942.92PREDICTED: uncharacterized protein LOC8287161 [Ricinus communis][more]
gi|743870476|ref|XP_011033588.1|8.5e-4945.09PREDICTED: uncharacterized protein LOC105132030 [Populus euphratica][more]
gi|566204002|ref|XP_002321027.2|1.9e-4844.64hypothetical protein POPTR_0014s12770g [Populus trichocarpa][more]
gi|567880711|ref|XP_006432914.1|7.2e-4840.27hypothetical protein CICLE_v10003730mg [Citrus clementina][more]
gi|568885719|ref|XP_006495397.1|7.2e-4840.27PREDICTED: uncharacterized protein LOC102617375, partial [Citrus sinensis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR003690MTERF
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
Vocabulary: Molecular Function
TermDefinition
GO:0003690double-stranded DNA binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005575 cellular_component
molecular_function GO:0003690 double-stranded DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh02G010730.1CmoCh02G010730.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003690Transcription termination factor, mitochondrial/chloroplasticPFAMPF02536mTERFcoord: 138..317
score: 5.3
IPR003690Transcription termination factor, mitochondrial/chloroplasticSMARTSM00733mt_12coord: 265..299
score: 200.0coord: 128..159
score: 510.0coord: 233..264
score:
NoneNo IPR availablePANTHERPTHR13068CGI-12 PROTEIN-RELATEDcoord: 117..341
score: 1.1
NoneNo IPR availablePANTHERPTHR13068:SF28MITOCHONDRIAL TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN-RELATEDcoord: 117..341
score: 1.1

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh02G010730Cp4.1LG05g06740Cucurbita pepo (Zucchini)cmocpeB595
CmoCh02G010730Carg08421Silver-seed gourdcarcmoB0971
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh02G010730Cucumber (Chinese Long) v3cmocucB0697
CmoCh02G010730Watermelon (97103) v2cmowmbB621
CmoCh02G010730Watermelon (97103) v2cmowmbB638
CmoCh02G010730Wax gourdcmowgoB0722
CmoCh02G010730Wax gourdcmowgoB0729
CmoCh02G010730Cucurbita moschata (Rifu)cmocmoB392
CmoCh02G010730Cucurbita moschata (Rifu)cmocmoB281
CmoCh02G010730Cucurbita moschata (Rifu)cmocmoB333
CmoCh02G010730Cucurbita moschata (Rifu)cmocmoB393
CmoCh02G010730Cucurbita moschata (Rifu)cmocmoB426
CmoCh02G010730Cucumber (Gy14) v1cgycmoB0871
CmoCh02G010730Cucurbita maxima (Rimu)cmacmoB260
CmoCh02G010730Cucurbita maxima (Rimu)cmacmoB333
CmoCh02G010730Cucurbita maxima (Rimu)cmacmoB416
CmoCh02G010730Cucurbita maxima (Rimu)cmacmoB527
CmoCh02G010730Cucurbita maxima (Rimu)cmacmoB619
CmoCh02G010730Wild cucumber (PI 183967)cmocpiB589
CmoCh02G010730Wild cucumber (PI 183967)cmocpiB600
CmoCh02G010730Cucumber (Chinese Long) v2cmocuB583
CmoCh02G010730Cucumber (Chinese Long) v2cmocuB594
CmoCh02G010730Melon (DHL92) v3.5.1cmomeB558
CmoCh02G010730Melon (DHL92) v3.5.1cmomeB567
CmoCh02G010730Watermelon (Charleston Gray)cmowcgB508
CmoCh02G010730Watermelon (Charleston Gray)cmowcgB557
CmoCh02G010730Watermelon (Charleston Gray)cmowcgB560
CmoCh02G010730Watermelon (97103) v1cmowmB535
CmoCh02G010730Watermelon (97103) v1cmowmB558
CmoCh02G010730Cucurbita pepo (Zucchini)cmocpeB546
CmoCh02G010730Cucurbita pepo (Zucchini)cmocpeB557
CmoCh02G010730Cucurbita pepo (Zucchini)cmocpeB568
CmoCh02G010730Bottle gourd (USVL1VR-Ls)cmolsiB557
CmoCh02G010730Bottle gourd (USVL1VR-Ls)cmolsiB558
CmoCh02G010730Cucumber (Gy14) v2cgybcmoB374
CmoCh02G010730Melon (DHL92) v3.6.1cmomedB639
CmoCh02G010730Melon (DHL92) v3.6.1cmomedB649
CmoCh02G010730Melon (DHL92) v3.6.1cmomedB653
CmoCh02G010730Silver-seed gourdcarcmoB0301