CmoCh02G010270 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh02G010270
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
Description40S ribosomal S13
LocationCmo_Chr02 : 6246191 .. 6248102 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CGAATTGTGAAATTAGGGTTTCTGGCATAGTGCAAAAGTAAGAGGTTGAAGAAGCTCCATTGCACTTCTATCTTCGCCGTCGTTGCCGCCATGGGTCGCATGCACAGCCGTGGGTCTCTCTCTCTCTCTATATATATATATGTGTGTGTGTAACTTTGTTTTTATGCTAATTTGGGTATCGCTAACTATGATTTTGTGCGTTTTGTTTGCAATAGGAAGGGTATTTCTGCCTCAGCGCTGCCTTACAAGAGAACTCCACCAGGTTGGCTGAAGATTTCTTCACAAGATGTAAGATTCTTCCTTATTATACTGCAAAATTTTCCTTTAGGAGCATGAATTGCTATCGTGCATTTCTGTTTCACTGCCGTGTAGAATCCCTATGTGCATTTGGACGGTGTTTGTTAATGGATTTTTGACTGGTTTGGGTTTCAGGTAGGAGAGAACATTTGCAAATTCGCGAAGAAGGGACTTACACCGTCACAAATTGGCGTTATTCTTCGTGATTCCCATGGTATAGCGCAGGTCAAGAGCGTTACAGGAAGCAAGATTTTGCGAATTCTCAAGGCTCACGGTACAATCTTTTTTTCTTCGATAGTGTAACAATGTGTTTCGGGAAATCAGAAAATTGTGAGATAATTGGAAGGATTCGTTGTGATCGGTTTTATGTTTATTTTAGATTTTTGGATGCTGATCGTGGAAGTGTATGGATTCAGATTATTTGAATTTCCTTGAATTGGTGTGTAGGTCTTGCTCCTGAAATTCCCGAGGATTTATACCACCTTATTAAGAAGGCAGTGTCAATTAGGAAGCATTTGGAAAGGAACAGGAAGGATAAGGACTCCAAATTTCGTTTGATTCTTGTTGAGAGCAGAATTCACAGGCTTGCTCGTTACTACAAGAAAACAAAGAAGCTTCCTCCCGTCTGGAAATAGTAAGTTGGGCTTGCTCTTCTTGATTTGTAGCTTTTCGCACTTGTAGTATGTATAGCATATCAATATATTCTTGCCAAAGGTTGGGTTCTTAGCTTTCAGTTTTTACCGCTTATTTTCAAATGCATGCCCATTAATTACTTAGTTATTAATATGGAATTTTCTGCTGGTATATTTTGAAATGCACAGTTCTGTCAGTATAATCAGCATTTTATGTCGTTCCAATGAACTGTTCTTGAATAGATTTCTGAATCATGTAGTACTGTGATAGTTGTGTTCGGTAGTTCATTTAAAGAGATGTATTAGACAAAAGGTACCTGCTTTATAAACTTTTTAGATAAGTTCATAATATATGTGACTTGTGACACTTTCTCTATGAAGCACATCCACTTTAGTTTAGATTGAGACATGTCCATATTTGACTCATACCGAACAACTTGTTCGGAAAAGTATAATAAAAAAGTCGTATATGACTAATGATGCATTTCGAAATGCCAACCTGAGAATACATTTTGAGAGTAAAATTCATCCAACTTACTATTGTAAATGTCTTTTGGGTATTAAAACCTAGACTTTTAGAGTAAAATGCACCATATTTGTGGGTGGTTGGTTCTCAAATCCATGTTGGTAATCACAATCTTGATATAGAAGTTTTACTCACATTTCTGCTCCTTCACTCTGCAGCGAGTCTACCACAGCCAGCACCCTCGTGGCTTAGATGGGGCCTGTGGGGATTGGATTTATTCTGAATCAGCAGCTGATTGCTTCGTGATTTGAGATGAAAAAATTTTGTTTATTTAATTGGGGCCTTTAGGTGTTTACTTCCATCTCCTTTTCCCGTTGAATGCTCTCTTTGTAATGGAAAAACTTGAAATGTGATCCAACGATTGCCTAGTCCATGGGTCATTTCTCTATGTTATGTGAAATTTTATCCAATTCATTTTATAATTATTAGTATCTATTTTCGAGCCACTAAGACCTAA

mRNA sequence

CGAATTGTGAAATTAGGGTTTCTGGCATAGTGCAAAAGTAAGAGGTTGAAGAAGCTCCATTGCACTTCTATCTTCGCCGTCGTTGCCGCCATGGGTCGCATGCACAGCCGTGGGAAGGGTATTTCTGCCTCAGCGCTGCCTTACAAGAGAACTCCACCAGGTTGGCTGAAGATTTCTTCACAAGATGTAGGAGAGAACATTTGCAAATTCGCGAAGAAGGGACTTACACCGTCACAAATTGGCGTTATTCTTCGTGATTCCCATGGTATAGCGCAGGTCAAGAGCGTTACAGGAAGCAAGATTTTGCGAATTCTCAAGGCTCACGGTCTTGCTCCTGAAATTCCCGAGGATTTATACCACCTTATTAAGAAGGCAGTGTCAATTAGGAAGCATTTGGAAAGGAACAGGAAGGATAAGGACTCCAAATTTCGTTTGATTCTTGTTGAGAGCAGAATTCACAGGCTTGCTCGTTACTACAAGAAAACAAAGAAGCTTCCTCCCGTCTGGAAATATATCTATTTTCGAGCCACTAAGACCTAA

Coding sequence (CDS)

ATGGGTCGCATGCACAGCCGTGGGAAGGGTATTTCTGCCTCAGCGCTGCCTTACAAGAGAACTCCACCAGGTTGGCTGAAGATTTCTTCACAAGATGTAGGAGAGAACATTTGCAAATTCGCGAAGAAGGGACTTACACCGTCACAAATTGGCGTTATTCTTCGTGATTCCCATGGTATAGCGCAGGTCAAGAGCGTTACAGGAAGCAAGATTTTGCGAATTCTCAAGGCTCACGGTCTTGCTCCTGAAATTCCCGAGGATTTATACCACCTTATTAAGAAGGCAGTGTCAATTAGGAAGCATTTGGAAAGGAACAGGAAGGATAAGGACTCCAAATTTCGTTTGATTCTTGTTGAGAGCAGAATTCACAGGCTTGCTCGTTACTACAAGAAAACAAAGAAGCTTCCTCCCGTCTGGAAATATATCTATTTTCGAGCCACTAAGACCTAA
Homology
[Close]
BLAST of CmoCh02G010270 vs. Swiss-Prot
Match: RS13_SOYBN (40S ribosomal protein S13 OS=Glycine max GN=RPS13 PE=2 SV=1)

HSP 1 Score: 276.6 bits (706), Expect = 1.6e-73
Identity = 137/141 (97.16%), Postives = 138/141 (97.87%), Query Frame = 1 

Query: 1   MGRMHSRGKGISASALPYKRTPPGWLKISSQDVGENICKFAKKGLTPSQIGVILRDSHGI 60
           MGRMHSRGKGIS+SALPYKRTPP WLKISSQDV ENICKFAKKGLTPSQIGVILRDSHGI
Sbjct: 1   MGRMHSRGKGISSSALPYKRTPPSWLKISSQDVEENICKFAKKGLTPSQIGVILRDSHGI 60

Query: 61  AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120
           AQV SVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES
Sbjct: 61  AQVNSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWKY 142
           RIHRLARYYKKTKKLPPVWKY
Sbjct: 121 RIHRLARYYKKTKKLPPVWKY 141

[Close]
BLAST of CmoCh02G010270 vs. Swiss-Prot
Match: RS132_ARATH (40S ribosomal protein S13-2 OS=Arabidopsis thaliana GN=RPS13B PE=2 SV=1)

HSP 1 Score: 267.3 bits (682), Expect = 1.0e-70
Identity = 132/141 (93.62%), Postives = 136/141 (96.45%), Query Frame = 1 

Query: 1   MGRMHSRGKGISASALPYKRTPPGWLKISSQDVGENICKFAKKGLTPSQIGVILRDSHGI 60
           MGRMHSRGKGISASALPYKR+ P WLK +SQDV E+ICKFAKKGLTPSQIGVILRDSHGI
Sbjct: 1   MGRMHSRGKGISASALPYKRSSPSWLKTTSQDVDESICKFAKKGLTPSQIGVILRDSHGI 60

Query: 61  AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120
            QVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAV+IRKHLERNRKDKDSKFRLILVES
Sbjct: 61  PQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWKY 142
           RIHRLARYYKKTKKLPPVWKY
Sbjct: 121 RIHRLARYYKKTKKLPPVWKY 141

[Close]
BLAST of CmoCh02G010270 vs. Swiss-Prot
Match: RS13_PEA (40S ribosomal protein S13 OS=Pisum sativum GN=RPS13 PE=2 SV=1)

HSP 1 Score: 266.5 bits (680), Expect = 1.7e-70
Identity = 132/141 (93.62%), Postives = 136/141 (96.45%), Query Frame = 1 

Query: 1   MGRMHSRGKGISASALPYKRTPPGWLKISSQDVGENICKFAKKGLTPSQIGVILRDSHGI 60
           MGR+HS+GKGIS+SALPY+RT P WLKISSQDV E ICKFAKKGLTPSQIGVILRDSHGI
Sbjct: 1   MGRLHSKGKGISSSALPYRRTAPSWLKISSQDVDETICKFAKKGLTPSQIGVILRDSHGI 60

Query: 61  AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120
           AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLER RKDKDSKFRLILVES
Sbjct: 61  AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERFRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWKY 142
           RIHRLARYYKKTKKLPPVWKY
Sbjct: 121 RIHRLARYYKKTKKLPPVWKY 141

[Close]
BLAST of CmoCh02G010270 vs. Swiss-Prot
Match: RS131_ARATH (40S ribosomal protein S13-1 OS=Arabidopsis thaliana GN=RPS13A PE=2 SV=1)

HSP 1 Score: 265.4 bits (677), Expect = 3.8e-70
Identity = 131/141 (92.91%), Postives = 135/141 (95.74%), Query Frame = 1 

Query: 1   MGRMHSRGKGISASALPYKRTPPGWLKISSQDVGENICKFAKKGLTPSQIGVILRDSHGI 60
           MGRMHSRGKGISASALPYKR+ P WLK + QDV E+ICKFAKKGLTPSQIGVILRDSHGI
Sbjct: 1   MGRMHSRGKGISASALPYKRSSPSWLKTTPQDVDESICKFAKKGLTPSQIGVILRDSHGI 60

Query: 61  AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120
            QVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAV+IRKHLERNRKDKDSKFRLILVES
Sbjct: 61  PQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWKY 142
           RIHRLARYYKKTKKLPPVWKY
Sbjct: 121 RIHRLARYYKKTKKLPPVWKY 141

[Close]
BLAST of CmoCh02G010270 vs. Swiss-Prot
Match: RS132_ORYSJ (40S ribosomal protein S13-2 OS=Oryza sativa subsp. japonica GN=Os08g0117300 PE=1 SV=1)

HSP 1 Score: 243.8 bits (621), Expect = 1.2e-63
Identity = 121/141 (85.82%), Postives = 127/141 (90.07%), Query Frame = 1 

Query: 1   MGRMHSRGKGISASALPYKRTPPGWLKISSQDVGENICKFAKKGLTPSQIGVILRDSHGI 60
           MGRMHSRGKGIS+SALPYKRTPP WLK ++ DV E I K AKKG  PSQIGV+LRD HGI
Sbjct: 1   MGRMHSRGKGISSSALPYKRTPPSWLKTAASDVEEMIMKAAKKGQMPSQIGVVLRDQHGI 60

Query: 61  AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120
             VKSVTGSKILRILKAHGLAPEIPEDLY LIKKAV+IRKHLERNRKDKDSKFRLILVES
Sbjct: 61  PLVKSVTGSKILRILKAHGLAPEIPEDLYFLIKKAVAIRKHLERNRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWKY 142
           RIHRLARYYK+TKKLPP WKY
Sbjct: 121 RIHRLARYYKRTKKLPPTWKY 141

[Close]
BLAST of CmoCh02G010270 vs. TrEMBL
Match: A0A059CJ48_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_D02462 PE=3 SV=1)

HSP 1 Score: 279.6 bits (714), Expect = 2.2e-72
Identity = 139/141 (98.58%), Postives = 139/141 (98.58%), Query Frame = 1 

Query: 1   MGRMHSRGKGISASALPYKRTPPGWLKISSQDVGENICKFAKKGLTPSQIGVILRDSHGI 60
           MGRMHSRGKGISASALPYKRTPP WLKISSQDV ENICKFAKKGLTPSQIGVILRDSHGI
Sbjct: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEENICKFAKKGLTPSQIGVILRDSHGI 60

Query: 61  AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120
           AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES
Sbjct: 61  AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWKY 142
           RIHRLARYYKKTKKLPPVWKY
Sbjct: 121 RIHRLARYYKKTKKLPPVWKY 141

[Close]
BLAST of CmoCh02G010270 vs. TrEMBL
Match: A0A0A0KEP4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G077430 PE=3 SV=1)

HSP 1 Score: 279.3 bits (713), Expect = 2.8e-72
Identity = 138/141 (97.87%), Postives = 139/141 (98.58%), Query Frame = 1 

Query: 1   MGRMHSRGKGISASALPYKRTPPGWLKISSQDVGENICKFAKKGLTPSQIGVILRDSHGI 60
           MGRMHSRGKGISASALPYKRTPP WLKISSQDV ENICKFAKKGLTPSQIGVILRDSHGI
Sbjct: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSQDVAENICKFAKKGLTPSQIGVILRDSHGI 60

Query: 61  AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120
           AQVKSVTG+KILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES
Sbjct: 61  AQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWKY 142
           RIHRLARYYKKTKKLPPVWKY
Sbjct: 121 RIHRLARYYKKTKKLPPVWKY 141

[Close]
BLAST of CmoCh02G010270 vs. TrEMBL
Match: M5WJE0_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012862mg PE=3 SV=1)

HSP 1 Score: 278.5 bits (711), Expect = 4.8e-72
Identity = 138/141 (97.87%), Postives = 139/141 (98.58%), Query Frame = 1 

Query: 1   MGRMHSRGKGISASALPYKRTPPGWLKISSQDVGENICKFAKKGLTPSQIGVILRDSHGI 60
           MGRMHSRGKGISASALPYKRTPP WLKIS+QDV ENICKFAKKGLTPSQIGVILRDSHGI
Sbjct: 1   MGRMHSRGKGISASALPYKRTPPSWLKISTQDVEENICKFAKKGLTPSQIGVILRDSHGI 60

Query: 61  AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120
           AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES
Sbjct: 61  AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWKY 142
           RIHRLARYYKKTKKLPPVWKY
Sbjct: 121 RIHRLARYYKKTKKLPPVWKY 141

[Close]
BLAST of CmoCh02G010270 vs. TrEMBL
Match: A0A0B0MHR3_GOSAR (40S ribosomal S13 OS=Gossypium arboreum GN=F383_19582 PE=3 SV=1)

HSP 1 Score: 278.5 bits (711), Expect = 4.8e-72
Identity = 138/141 (97.87%), Postives = 139/141 (98.58%), Query Frame = 1 

Query: 1   MGRMHSRGKGISASALPYKRTPPGWLKISSQDVGENICKFAKKGLTPSQIGVILRDSHGI 60
           MGRMHSRGKGISASALPYKRTPP WLKISSQDV ENICKFAKKGLTPSQIGVILRDSHGI
Sbjct: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEENICKFAKKGLTPSQIGVILRDSHGI 60

Query: 61  AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120
           AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAV+IRKHLERNRKDKDSKFRLILVES
Sbjct: 61  AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWKY 142
           RIHRLARYYKKTKKLPPVWKY
Sbjct: 121 RIHRLARYYKKTKKLPPVWKY 141

[Close]
BLAST of CmoCh02G010270 vs. TrEMBL
Match: A0A059CIJ2_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_D02461 PE=3 SV=1)

HSP 1 Score: 278.5 bits (711), Expect = 4.8e-72
Identity = 138/141 (97.87%), Postives = 139/141 (98.58%), Query Frame = 1 

Query: 1   MGRMHSRGKGISASALPYKRTPPGWLKISSQDVGENICKFAKKGLTPSQIGVILRDSHGI 60
           MGRMHSRGKGISASALPYKRTPP WLKISSQDV ENICKFAKKGLTPSQIGVILRDSHGI
Sbjct: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEENICKFAKKGLTPSQIGVILRDSHGI 60

Query: 61  AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120
           AQV+SVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES
Sbjct: 61  AQVRSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWKY 142
           RIHRLARYYKKTKKLPPVWKY
Sbjct: 121 RIHRLARYYKKTKKLPPVWKY 141

[Close]
BLAST of CmoCh02G010270 vs. TAIR10
Match: AT4G00100.1 (AT4G00100.1 ribosomal protein S13A)

HSP 1 Score: 267.3 bits (682), Expect = 5.6e-72
Identity = 132/141 (93.62%), Postives = 136/141 (96.45%), Query Frame = 1 

Query: 1   MGRMHSRGKGISASALPYKRTPPGWLKISSQDVGENICKFAKKGLTPSQIGVILRDSHGI 60
           MGRMHSRGKGISASALPYKR+ P WLK +SQDV E+ICKFAKKGLTPSQIGVILRDSHGI
Sbjct: 1   MGRMHSRGKGISASALPYKRSSPSWLKTTSQDVDESICKFAKKGLTPSQIGVILRDSHGI 60

Query: 61  AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120
            QVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAV+IRKHLERNRKDKDSKFRLILVES
Sbjct: 61  PQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWKY 142
           RIHRLARYYKKTKKLPPVWKY
Sbjct: 121 RIHRLARYYKKTKKLPPVWKY 141

[Close]
BLAST of CmoCh02G010270 vs. TAIR10
Match: AT3G60770.1 (AT3G60770.1 Ribosomal protein S13/S15)

HSP 1 Score: 265.4 bits (677), Expect = 2.1e-71
Identity = 131/141 (92.91%), Postives = 135/141 (95.74%), Query Frame = 1 

Query: 1   MGRMHSRGKGISASALPYKRTPPGWLKISSQDVGENICKFAKKGLTPSQIGVILRDSHGI 60
           MGRMHSRGKGISASALPYKR+ P WLK + QDV E+ICKFAKKGLTPSQIGVILRDSHGI
Sbjct: 1   MGRMHSRGKGISASALPYKRSSPSWLKTTPQDVDESICKFAKKGLTPSQIGVILRDSHGI 60

Query: 61  AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120
            QVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAV+IRKHLERNRKDKDSKFRLILVES
Sbjct: 61  PQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWKY 142
           RIHRLARYYKKTKKLPPVWKY
Sbjct: 121 RIHRLARYYKKTKKLPPVWKY 141

[Close]
BLAST of CmoCh02G010270 vs. NCBI nr
Match: gi|702328061|ref|XP_010053902.1| (PREDICTED: 40S ribosomal protein S13 [Eucalyptus grandis])

HSP 1 Score: 279.6 bits (714), Expect = 3.1e-72
Identity = 139/141 (98.58%), Postives = 139/141 (98.58%), Query Frame = 1 

Query: 1   MGRMHSRGKGISASALPYKRTPPGWLKISSQDVGENICKFAKKGLTPSQIGVILRDSHGI 60
           MGRMHSRGKGISASALPYKRTPP WLKISSQDV ENICKFAKKGLTPSQIGVILRDSHGI
Sbjct: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEENICKFAKKGLTPSQIGVILRDSHGI 60

Query: 61  AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120
           AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES
Sbjct: 61  AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWKY 142
           RIHRLARYYKKTKKLPPVWKY
Sbjct: 121 RIHRLARYYKKTKKLPPVWKY 141

[Close]
BLAST of CmoCh02G010270 vs. NCBI nr
Match: gi|449472968|ref|XP_004153746.1| (PREDICTED: 40S ribosomal protein S13 [Cucumis sativus])

HSP 1 Score: 279.3 bits (713), Expect = 4.0e-72
Identity = 138/141 (97.87%), Postives = 139/141 (98.58%), Query Frame = 1 

Query: 1   MGRMHSRGKGISASALPYKRTPPGWLKISSQDVGENICKFAKKGLTPSQIGVILRDSHGI 60
           MGRMHSRGKGISASALPYKRTPP WLKISSQDV ENICKFAKKGLTPSQIGVILRDSHGI
Sbjct: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSQDVAENICKFAKKGLTPSQIGVILRDSHGI 60

Query: 61  AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120
           AQVKSVTG+KILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES
Sbjct: 61  AQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWKY 142
           RIHRLARYYKKTKKLPPVWKY
Sbjct: 121 RIHRLARYYKKTKKLPPVWKY 141

[Close]
BLAST of CmoCh02G010270 vs. NCBI nr
Match: gi|951009695|ref|XP_014509360.1| (PREDICTED: 40S ribosomal protein S13 [Vigna radiata var. radiata])

HSP 1 Score: 278.5 bits (711), Expect = 6.9e-72
Identity = 138/141 (97.87%), Postives = 139/141 (98.58%), Query Frame = 1 

Query: 1   MGRMHSRGKGISASALPYKRTPPGWLKISSQDVGENICKFAKKGLTPSQIGVILRDSHGI 60
           MGRMHSRGKGIS+SALPYKRTPP WLKISSQDV ENICKFAKKGLTPSQIGVILRDSHGI
Sbjct: 1   MGRMHSRGKGISSSALPYKRTPPSWLKISSQDVEENICKFAKKGLTPSQIGVILRDSHGI 60

Query: 61  AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120
           AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES
Sbjct: 61  AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWKY 142
           RIHRLARYYKKTKKLPPVWKY
Sbjct: 121 RIHRLARYYKKTKKLPPVWKY 141

[Close]
BLAST of CmoCh02G010270 vs. NCBI nr
Match: gi|590671851|ref|XP_007038446.1| (Ribosomal protein S13A [Theobroma cacao])

HSP 1 Score: 278.5 bits (711), Expect = 6.9e-72
Identity = 138/141 (97.87%), Postives = 139/141 (98.58%), Query Frame = 1 

Query: 1   MGRMHSRGKGISASALPYKRTPPGWLKISSQDVGENICKFAKKGLTPSQIGVILRDSHGI 60
           MGRMHSRGKGISASALPYKRTPP WLKISSQDV ENICKFAKKGLTPSQIGVILRDSHGI
Sbjct: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEENICKFAKKGLTPSQIGVILRDSHGI 60

Query: 61  AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120
           AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAV+IRKHLERNRKDKDSKFRLILVES
Sbjct: 61  AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWKY 142
           RIHRLARYYKKTKKLPPVWKY
Sbjct: 121 RIHRLARYYKKTKKLPPVWKY 141

[Close]
BLAST of CmoCh02G010270 vs. NCBI nr
Match: gi|702328056|ref|XP_010053901.1| (PREDICTED: 40S ribosomal protein S13 [Eucalyptus grandis])

HSP 1 Score: 278.5 bits (711), Expect = 6.9e-72
Identity = 138/141 (97.87%), Postives = 139/141 (98.58%), Query Frame = 1 

Query: 1   MGRMHSRGKGISASALPYKRTPPGWLKISSQDVGENICKFAKKGLTPSQIGVILRDSHGI 60
           MGRMHSRGKGISASALPYKRTPP WLKISSQDV ENICKFAKKGLTPSQIGVILRDSHGI
Sbjct: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEENICKFAKKGLTPSQIGVILRDSHGI 60

Query: 61  AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120
           AQV+SVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES
Sbjct: 61  AQVRSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWKY 142
           RIHRLARYYKKTKKLPPVWKY
Sbjct: 121 RIHRLARYYKKTKKLPPVWKY 141

The following BLAST results are available for this feature:
BLAST of CmoCh02G010270 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RS13_SOYBN1.6e-7397.1640S ribosomal protein S13 OS=Glycine max GN=RPS13 PE=2 SV=1[more]
RS132_ARATH1.0e-7093.6240S ribosomal protein S13-2 OS=Arabidopsis thaliana GN=RPS13B PE=2 SV=1[more]
RS13_PEA1.7e-7093.6240S ribosomal protein S13 OS=Pisum sativum GN=RPS13 PE=2 SV=1[more]
RS131_ARATH3.8e-7092.9140S ribosomal protein S13-1 OS=Arabidopsis thaliana GN=RPS13A PE=2 SV=1[more]
RS132_ORYSJ1.2e-6385.8240S ribosomal protein S13-2 OS=Oryza sativa subsp. japonica GN=Os08g0117300 PE=1... [more]
BLAST of CmoCh02G010270 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A059CJ48_EUCGR2.2e-7298.58Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_D02462 PE=3 SV=1[more]
A0A0A0KEP4_CUCSA2.8e-7297.87Uncharacterized protein OS=Cucumis sativus GN=Csa_6G077430 PE=3 SV=1[more]
M5WJE0_PRUPE4.8e-7297.87Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012862mg PE=3 SV=1[more]
A0A0B0MHR3_GOSAR4.8e-7297.8740S ribosomal S13 OS=Gossypium arboreum GN=F383_19582 PE=3 SV=1[more]
A0A059CIJ2_EUCGR4.8e-7297.87Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_D02461 PE=3 SV=1[more]
BLAST of CmoCh02G010270 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G00100.15.6e-7293.62 ribosomal protein S13A[more]
AT3G60770.12.1e-7192.91 Ribosomal protein S13/S15[more]
BLAST of CmoCh02G010270 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|702328061|ref|XP_010053902.1|3.1e-7298.58PREDICTED: 40S ribosomal protein S13 [Eucalyptus grandis][more]
gi|449472968|ref|XP_004153746.1|4.0e-7297.87PREDICTED: 40S ribosomal protein S13 [Cucumis sativus][more]
gi|951009695|ref|XP_014509360.1|6.9e-7297.87PREDICTED: 40S ribosomal protein S13 [Vigna radiata var. radiata][more]
gi|590671851|ref|XP_007038446.1|6.9e-7297.87Ribosomal protein S13A [Theobroma cacao][more]
gi|702328056|ref|XP_010053901.1|6.9e-7297.87PREDICTED: 40S ribosomal protein S13 [Eucalyptus grandis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000589Ribosomal_S15
IPR009068S15_NS1_RNA-bd
IPR012606Ribosomal_S13/S15_N
IPR023029Ribosomal_S15P
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
cellular_component GO:0005840 ribosome
cellular_component GO:0005622 intracellular
molecular_function GO:0003735 structural constituent of ribosome
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh02G010270.1CmoCh02G010270.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000589Ribosomal protein S15PFAMPF00312Ribosomal_S15coord: 74..143
score: 2.0
IPR000589Ribosomal protein S15SMARTSM01387Ribosomal_S15_2coord: 70..149
score: 7.3
IPR000589Ribosomal protein S15PROSITEPS00362RIBOSOMAL_S15coord: 98..128
scor
IPR009068S15/NS1, RNA-bindingunknownSSF47060S15/NS1 RNA-binding domaincoord: 66..141
score: 4.41
IPR012606Ribosomal protein S13/S15, N-terminalPFAMPF08069Ribosomal_S13_Ncoord: 1..60
score: 5.3
IPR012606Ribosomal protein S13/S15, N-terminalSMARTSM01386Ribosomal_S13_N_2coord: 1..60
score: 1.1
IPR023029Ribosomal protein S15PHAMAPMF_01343_ARibosomal_S15_Acoord: 3..149
score: 30
NoneNo IPR availablePANTHERPTHR11885RIBOSOMAL PROTEIN S15P/S13Ecoord: 2..141
score: 4.6E

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh02G010270CmaCh02G010120Cucurbita maxima (Rimu)cmacmoB619
CmoCh02G010270Carg08465Silver-seed gourdcarcmoB0971
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmoCh02G010270CmoCh02G015400Cucurbita moschata (Rifu)cmocmoB426
The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh02G010270Cucumber (Gy14) v2cgybcmoB365
CmoCh02G010270Cucumber (Gy14) v2cgybcmoB614
CmoCh02G010270Melon (DHL92) v3.6.1cmomedB597
CmoCh02G010270Melon (DHL92) v3.6.1cmomedB649
CmoCh02G010270Silver-seed gourdcarcmoB1389
CmoCh02G010270Cucumber (Chinese Long) v3cmocucB0697
CmoCh02G010270Cucumber (Chinese Long) v3cmocucB0719
CmoCh02G010270Watermelon (97103) v2cmowmbB576
CmoCh02G010270Watermelon (97103) v2cmowmbB621
CmoCh02G010270Wax gourdcmowgoB0706
CmoCh02G010270Wax gourdcmowgoB0707
CmoCh02G010270Cucurbita moschata (Rifu)cmocmoB247
CmoCh02G010270Cucurbita moschata (Rifu)cmocmoB333
CmoCh02G010270Cucumber (Gy14) v1cgycmoB0278
CmoCh02G010270Cucurbita maxima (Rimu)cmacmoB295
CmoCh02G010270Cucurbita maxima (Rimu)cmacmoB416
CmoCh02G010270Wild cucumber (PI 183967)cmocpiB589
CmoCh02G010270Wild cucumber (PI 183967)cmocpiB607
CmoCh02G010270Cucumber (Chinese Long) v2cmocuB583
CmoCh02G010270Cucumber (Chinese Long) v2cmocuB599
CmoCh02G010270Melon (DHL92) v3.5.1cmomeB520
CmoCh02G010270Melon (DHL92) v3.5.1cmomeB567
CmoCh02G010270Watermelon (Charleston Gray)cmowcgB517
CmoCh02G010270Watermelon (Charleston Gray)cmowcgB557
CmoCh02G010270Watermelon (97103) v1cmowmB558
CmoCh02G010270Watermelon (97103) v1cmowmB569
CmoCh02G010270Cucurbita pepo (Zucchini)cmocpeB546
CmoCh02G010270Cucurbita pepo (Zucchini)cmocpeB552
CmoCh02G010270Cucurbita pepo (Zucchini)cmocpeB595
CmoCh02G010270Bottle gourd (USVL1VR-Ls)cmolsiB517
CmoCh02G010270Bottle gourd (USVL1VR-Ls)cmolsiB570