CmoCh02G008540 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh02G008540
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Unknown protein
Location	Cmo_Chr02 : 5199094 .. 5199840 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCACGATTCCAACTGCGATCTTCTTCAAACTTCCGATCCTCGCTCCTCCTTAAGGAAGCGAGATCATAAAAAATTAGCTGAGAAGTGGATTCATTCGATTCATTTGATTCTGCTCCTTATCCAGGTAAATTTGTCGAAGAACTTCAAGAATCCGTTTCTGATCTCTTCTGTAATTTCTTCAATCGGATCGAATCGAATCTCTTGGCGATTGGTTTCTGGCTCTTGCAAATGTGATTTGACAGTTTCTTTTACTTGATTCTCCTTCTACGCTCTTCTCTTCCATTCTTCTTTTCCTTTATCGATTTGCTAACATTTATGCTTATATTTTTTCTTCGAACGCAGTGAGTTCAGAGATCAAGGACGGAAGGAATTAGAGCAGTTCATTCAAGCGAGTTTCTGAAGGCGCCGAAGCACAACGACAATGTCGAACTTGCCGTCTTCGGATTCCGGCATGGTTCGAGTCCTCGGAATCTAACCAGCAGCGGCGCTCGAGACTCACGGATACCGACCAAGGTCAATTGGGCCGGTCCATTGAAATGTATTGGGCTACGAGAGCCAGGCCCATCCCAGCCCAGCCCAGCCCAAAAAGTAAGTACCCATAATCCATTTAAGAGAGTAGTAGTCTATTTTGTGATTTACACATGAGGCATGTGATTCCATCGCCCTTTCTTTCACTGTTTAGAAACCTTTACCTCAAACAACCAATGCCACGTCATCGCCGGGACCAATATCAGGCCAAAATTAA

mRNA sequence

ATGCACGATTCCAACTGCGATCTTCTTCAAACTTCCGATCCTCGCTCCTCCTTAAGGAAGCGAGATCATAAAAAATTAGCTGAGAAGTGGATTCATTCGATTCATTTGATTCTGCTCCTTATCCAGAGATCAAGGACGGAAGGAATTAGAGCAGTTCATTCAAGCGAGTTTCTGAAGGCGCCGAAGCACAACGACAATGTCGAACTTGCCGTCTTCGGATTCCGGCATGGTTCGAGTCCTCGGAATCTAACCAGCAGCGGCGCTCGAGACTCACGGATACCGACCAAGGTCAATTGGGCCGGTCCATTGAAATGTATTGGGCTACGAGAGCCAGGCCCATCCCAGCCCAGCCCAGCCCAAAAAAAACCTTTACCTCAAACAACCAATGCCACGTCATCGCCGGGACCAATATCAGGCCAAAATTAA

Coding sequence (CDS)

ATGCACGATTCCAACTGCGATCTTCTTCAAACTTCCGATCCTCGCTCCTCCTTAAGGAAGCGAGATCATAAAAAATTAGCTGAGAAGTGGATTCATTCGATTCATTTGATTCTGCTCCTTATCCAGAGATCAAGGACGGAAGGAATTAGAGCAGTTCATTCAAGCGAGTTTCTGAAGGCGCCGAAGCACAACGACAATGTCGAACTTGCCGTCTTCGGATTCCGGCATGGTTCGAGTCCTCGGAATCTAACCAGCAGCGGCGCTCGAGACTCACGGATACCGACCAAGGTCAATTGGGCCGGTCCATTGAAATGTATTGGGCTACGAGAGCCAGGCCCATCCCAGCCCAGCCCAGCCCAAAAAAAACCTTTACCTCAAACAACCAATGCCACGTCATCGCCGGGACCAATATCAGGCCAAAATTAA

Homology

[Close]

BLAST of CmoCh02G008540 vs. TrEMBL
Match: A0A0A0KHS9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G301010 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 3.6e-08
Identity = 50/109 (45.87%), Postives = 60/109 (55.05%), Query Frame = 1


Query: 7   DLLQTSDPRSSLRKRDHK---KLAEKWIHSIHLILLLI---------QRSRTEGIRAVHS 66
           DLL  SDPR  +RKRD     +    WIH I LILLLI            +  GIRAV  
Sbjct: 41  DLLPVSDPRFWIRKRDRNSRYRFRVHWIHLIPLILLLILFILWWSSYPAIKDGGIRAVDE 100

Query: 67  SE-FLKAPKHNDNVELAVF---GFRHGSSPRNLTSSGARDSR-IPTKVN 99
            + F + PK+ D+ ELAV    G    SSP NLTS G RDSR IP+K++
Sbjct: 101 KDRFPEVPKYVDHTELAVLGDAGMDIASSPLNLTSVGDRDSRIIPSKID 149

[Close]

BLAST of CmoCh02G008540 vs. NCBI nr
Match: gi|659127744|ref|XP_008463866.1| (PREDICTED: uncharacterized protein LOC103501898 isoform X2 [Cucumis melo])

HSP 1 Score: 67.0 bits (162), Expect = 3.0e-08
Identity = 51/109 (46.79%), Postives = 61/109 (55.96%), Query Frame = 1


Query: 7   DLLQTSDPRSSLRKRDHK---KLAEKWIHSIHLILLLI---------QRSRTEGIRAVHS 66
           DLL  SDPR S+RKRD     +    WIH I LILLLI            +  GIRA + 
Sbjct: 41  DLLPISDPRFSIRKRDRNSRYRFHVHWIHLIPLILLLILFILWWSSYPVIKDGGIRADYE 100

Query: 67  SEFL-KAPKHNDNVELAVF---GFRHGSSPRNLTSSGARDSR-IPTKVN 99
            E L + PK+ D+ ELAV    G    SSP NLTS G RDSR IP+K++
Sbjct: 101 KERLPEVPKYVDHTELAVLGDAGMHIASSPLNLTSVGDRDSRIIPSKID 149

[Close]

BLAST of CmoCh02G008540 vs. NCBI nr
Match: gi|449461031|ref|XP_004148247.1| (PREDICTED: uncharacterized protein LOC101221086 [Cucumis sativus])

HSP 1 Score: 66.2 bits (160), Expect = 5.1e-08
Identity = 50/109 (45.87%), Postives = 60/109 (55.05%), Query Frame = 1


Query: 7   DLLQTSDPRSSLRKRDHK---KLAEKWIHSIHLILLLI---------QRSRTEGIRAVHS 66
           DLL  SDPR  +RKRD     +    WIH I LILLLI            +  GIRAV  
Sbjct: 41  DLLPVSDPRFWIRKRDRNSRYRFRVHWIHLIPLILLLILFILWWSSYPAIKDGGIRAVDE 100

Query: 67  SE-FLKAPKHNDNVELAVF---GFRHGSSPRNLTSSGARDSR-IPTKVN 99
            + F + PK+ D+ ELAV    G    SSP NLTS G RDSR IP+K++
Sbjct: 101 KDRFPEVPKYVDHTELAVLGDAGMDIASSPLNLTSVGDRDSRIIPSKID 149

[Close]

BLAST of CmoCh02G008540 vs. NCBI nr
Match: gi|659127742|ref|XP_008463865.1| (PREDICTED: uncharacterized protein LOC103501898 isoform X1 [Cucumis melo])

HSP 1 Score: 65.1 bits (157), Expect = 1.1e-07
Identity = 49/103 (47.57%), Postives = 56/103 (54.37%), Query Frame = 1


Query: 7   DLLQTSDPRSSLRKRDHK---KLAEKWIHSIHLILLLI---------QRSRTEGIRAVHS 66
           DLL  SDPR S+RKRD     +    WIH I LILLLI            +  GIRA + 
Sbjct: 41  DLLPISDPRFSIRKRDRNSRYRFHVHWIHLIPLILLLILFILWWSSYPVIKDGGIRADYE 100

Query: 67  SEFL-KAPKHNDNVELAVF---GFRHGSSPRNLTSSGARDSRI 94
            E L + PK+ D+ ELAV    G    SSP NLTS G RDSRI
Sbjct: 101 KERLPEVPKYVDHTELAVLGDAGMHIASSPLNLTSVGDRDSRI 143

The following BLAST results are available for this feature:

BLAST of CmoCh02G008540 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh02G008540 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KHS9_CUCSA	3.6e-08	45.87	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G301010 PE=4 SV=1	[more]

BLAST of CmoCh02G008540 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmoCh02G008540 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659127744\|ref\|XP_008463866.1\|	3.0e-08	46.79	PREDICTED: uncharacterized protein LOC103501898 isoform X2 [Cucumis melo]	[more]
gi\|449461031\|ref\|XP_004148247.1\|	5.1e-08	45.87	PREDICTED: uncharacterized protein LOC101221086 [Cucumis sativus]	[more]
gi\|659127742\|ref\|XP_008463865.1\|	1.1e-07	47.57	PREDICTED: uncharacterized protein LOC103501898 isoform X1 [Cucumis melo]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh02G008540.1	CmoCh02G008540.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh02G008540	Cla013257	Watermelon (97103) v1	cmowmB577
CmoCh02G008540	ClCG02G020710	Watermelon (Charleston Gray)	cmowcgB525
CmoCh02G008540	Carg03273	Silver-seed gourd	carcmoB0467

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh02G008540	CmoCh20G004880	Cucurbita moschata (Rifu)	cmocmoB403

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh02G008540	Watermelon (97103) v2	cmowmbB615
CmoCh02G008540	Watermelon (97103) v2	cmowmbB586
CmoCh02G008540	Watermelon (97103) v2	cmowmbB588
CmoCh02G008540	Watermelon (97103) v2	cmowmbB619
CmoCh02G008540	Wax gourd	cmowgoB0702
CmoCh02G008540	Wax gourd	cmowgoB0746
CmoCh02G008540	Cucurbita moschata (Rifu)	cmocmoB180
CmoCh02G008540	Cucurbita moschata (Rifu)	cmocmoB211
CmoCh02G008540	Cucurbita moschata (Rifu)	cmocmoB357
CmoCh02G008540	Cucurbita moschata (Rifu)	cmocmoB433
CmoCh02G008540	Cucurbita moschata (Rifu)	cmocmoB434
CmoCh02G008540	Cucurbita moschata (Rifu)	cmocmoB436
CmoCh02G008540	Cucumber (Gy14) v1	cgycmoB0471
CmoCh02G008540	Cucurbita maxima (Rimu)	cmacmoB553
CmoCh02G008540	Cucurbita maxima (Rimu)	cmacmoB619
CmoCh02G008540	Cucurbita maxima (Rimu)	cmacmoB722
CmoCh02G008540	Cucurbita maxima (Rimu)	cmacmoB723
CmoCh02G008540	Wild cucumber (PI 183967)	cmocpiB573
CmoCh02G008540	Wild cucumber (PI 183967)	cmocpiB631
CmoCh02G008540	Cucumber (Chinese Long) v2	cmocuB607
CmoCh02G008540	Cucumber (Chinese Long) v2	cmocuB624
CmoCh02G008540	Melon (DHL92) v3.5.1	cmomeB522
CmoCh02G008540	Melon (DHL92) v3.5.1	cmomeB525
CmoCh02G008540	Melon (DHL92) v3.5.1	cmomeB560
CmoCh02G008540	Watermelon (Charleston Gray)	cmowcgB514
CmoCh02G008540	Watermelon (97103) v1	cmowmB546
CmoCh02G008540	Cucurbita pepo (Zucchini)	cmocpeB574
CmoCh02G008540	Cucurbita pepo (Zucchini)	cmocpeB586
CmoCh02G008540	Cucurbita pepo (Zucchini)	cmocpeB587
CmoCh02G008540	Cucurbita pepo (Zucchini)	cmocpeB588
CmoCh02G008540	Cucurbita pepo (Zucchini)	cmocpeB595
CmoCh02G008540	Bottle gourd (USVL1VR-Ls)	cmolsiB532
CmoCh02G008540	Bottle gourd (USVL1VR-Ls)	cmolsiB547
CmoCh02G008540	Bottle gourd (USVL1VR-Ls)	cmolsiB548
CmoCh02G008540	Bottle gourd (USVL1VR-Ls)	cmolsiB553
CmoCh02G008540	Bottle gourd (USVL1VR-Ls)	cmolsiB554
CmoCh02G008540	Cucumber (Gy14) v2	cgybcmoB111
CmoCh02G008540	Cucumber (Gy14) v2	cgybcmoB364
CmoCh02G008540	Cucumber (Gy14) v2	cgybcmoB500
CmoCh02G008540	Cucumber (Gy14) v2	cgybcmoB791
CmoCh02G008540	Cucumber (Gy14) v2	cgybcmoB802
CmoCh02G008540	Melon (DHL92) v3.6.1	cmomedB602
CmoCh02G008540	Melon (DHL92) v3.6.1	cmomedB641
CmoCh02G008540	Silver-seed gourd	carcmoB0421
CmoCh02G008540	Silver-seed gourd	carcmoB1339
CmoCh02G008540	Cucumber (Chinese Long) v3	cmocucB0677
CmoCh02G008540	Cucumber (Chinese Long) v3	cmocucB0717
CmoCh02G008540	Cucumber (Chinese Long) v3	cmocucB0744