CmoCh02G006490 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh02G006490
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Membrane lipoprotein, putative
Location	Cmo_Chr02 : 4042622 .. 4043062 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTTTGGTCGATCCATCAATTGGACGTGTATTAATATGGATCGTTACTTTCATTCTCTTCCTCTCTGTTCTCAGCGGCGGCGGATGCCTTTTGATGTATATTACCCTACCTGAGACCGAAAACACCGCATGGCTACCGGTCGCAGGCTTGTCGTTGGTCTGCCTCCCTTGGTTCTTTTGGTTCTTAACTTTCTTGTATAGAATCATCTCACGTGCATGTGGTTTTAGAGTCTCTCTTGGCTTAGTTGTGAACGAAGATGCAGCGGCAACAAATAACGAAAATGCCGATAATAATACTCATAATGAATCCCCTCAAAGTGATGCAGGGTGTCAGGCTAATAAGGAGGACGGCAATCAAAGGCAAAGCAATTCATCATCAAACAGCTCGGGAGCGTCTCGTGAAAGTGAAAAGCCATTAGCCATAACAATGGGGTCGTAA

mRNA sequence

ATGTCTTTGGTCGATCCATCAATTGGACGTGTATTAATATGGATCGTTACTTTCATTCTCTTCCTCTCTGTTCTCAGCGGCGGCGGATGCCTTTTGATGTATATTACCCTACCTGAGACCGAAAACACCGCATGGCTACCGGTCGCAGGCTTGTCGTTGGTCTGCCTCCCTTGGTTCTTTTGGTTCTTAACTTTCTTGTATAGAATCATCTCACGTGCATGTGGTTTTAGAGTCTCTCTTGGCTTAGTTGTGAACGAAGATGCAGCGGCAACAAATAACGAAAATGCCGATAATAATACTCATAATGAATCCCCTCAAAGTGATGCAGGGTGTCAGGCTAATAAGGAGGACGGCAATCAAAGGCAAAGCAATTCATCATCAAACAGCTCGGGAGCGTCTCGTGAAAGTGAAAAGCCATTAGCCATAACAATGGGGTCGTAA

Coding sequence (CDS)

ATGTCTTTGGTCGATCCATCAATTGGACGTGTATTAATATGGATCGTTACTTTCATTCTCTTCCTCTCTGTTCTCAGCGGCGGCGGATGCCTTTTGATGTATATTACCCTACCTGAGACCGAAAACACCGCATGGCTACCGGTCGCAGGCTTGTCGTTGGTCTGCCTCCCTTGGTTCTTTTGGTTCTTAACTTTCTTGTATAGAATCATCTCACGTGCATGTGGTTTTAGAGTCTCTCTTGGCTTAGTTGTGAACGAAGATGCAGCGGCAACAAATAACGAAAATGCCGATAATAATACTCATAATGAATCCCCTCAAAGTGATGCAGGGTGTCAGGCTAATAAGGAGGACGGCAATCAAAGGCAAAGCAATTCATCATCAAACAGCTCGGGAGCGTCTCGTGAAAGTGAAAAGCCATTAGCCATAACAATGGGGTCGTAA

Homology

[Close]

BLAST of CmoCh02G006490 vs. TrEMBL
Match: A0A0A0LJX6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G336080 PE=4 SV=1)

HSP 1 Score: 173.7 bits (439), Expect = 1.6e-40
Identity = 99/153 (64.71%), Postives = 116/153 (75.82%), Query Frame = 1


Query: 1   MSLVDPSIGRVLIWIVTFILFLSVLSGGGCLLMYITLPETENTAWLPVAGLSLVCLPWFF 60
           MSLV+PS GR  IWIVT  LF S+LSGGGCLLMY+ LPETE TAWLP+ GLSLVCLPWFF
Sbjct: 1   MSLVNPSAGRAFIWIVTCFLFFSILSGGGCLLMYMILPETETTAWLPITGLSLVCLPWFF 60

Query: 61  WFLTFLYRIISRACGFRVSLGLVVNEDAAATNNENADNNTHN-----ESPQSDAGCQANK 120
           W LTF YR++SRACGFRVSLG+  +    ++NN NA+NN +N     ES Q D G + N+
Sbjct: 61  WLLTFFYRVLSRACGFRVSLGIGAD---VSSNNANANNNNNNNASSAESAQQDVGERDNE 120

Query: 121 EDGN--QRQSNSSSNSSGASRESEKPLAITMGS 147
           ++ N  QR SNSSSN+S  SRESE PLAITM S
Sbjct: 121 DNNNADQRHSNSSSNNSIVSRESEMPLAITMAS 150

[Close]

BLAST of CmoCh02G006490 vs. TrEMBL
Match: G7LEW9_MEDTR (Membrane lipoprotein, putative OS=Medicago truncatula GN=MTR_8g094040 PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 9.3e-20
Identity = 67/152 (44.08%), Postives = 85/152 (55.92%), Query Frame = 1


Query: 1   MSLVDPSIGRVLIWIVTFILFLSVLSGGGCLLMYITLPETENTAWLPVAGLSLVCLPWFF 60
           M + DPS GR  IW+VT +LF+S+L+GG CL  Y+ LPE+E ++W+PVAG+  VCLPW F
Sbjct: 1   MPVSDPSSGRAFIWLVTCLLFISLLAGGVCLGAYMLLPESETSSWIPVAGVVFVCLPWAF 60

Query: 61  WFLTFLYRIISRACGFRVSLGLVVNED------AAATNNENADNNTHNESPQSDAGCQAN 120
           WFLT LYRI SR  G RV  G+             +T   N D     +SP+     Q N
Sbjct: 61  WFLTCLYRIFSRCFGLRVGAGIANGGGGGGGNWGGSTTPRNGDVEVATQSPKGVGAAQLN 120

Query: 121 KEDGNQRQSNSSSNSSGASRESEKPLAITMGS 147
           +             SS AS ESE PLA +M S
Sbjct: 121 RV------------SSVASHESELPLAKSMRS 140

[Close]

BLAST of CmoCh02G006490 vs. TrEMBL
Match: B9H4B6_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s06760g PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 7.9e-19
Identity = 70/173 (40.46%), Postives = 96/173 (55.49%), Query Frame = 1


Query: 1   MSLVDPSIGRVLIWIVTFILFLSVLSGGGCLLMYITLPETENTAWLPVAGLSLVCLPWFF 60
           M + DP+ GR+LIW ++F +F++V +GG  LL+Y+ LP   + AWLPVAG++LVCLPW F
Sbjct: 1   MPVEDPTSGRLLIWFISFFMFITVAAGGSLLLLYLVLPSDPSRAWLPVAGIALVCLPWLF 60

Query: 61  WFLTFLYRIISRACGFRVSLGL-------------VVNEDA-AATNNENADNNTHNES-- 120
           WFLT +YR +SR  GFRV++G              V N    AATN ++ +  T  +   
Sbjct: 61  WFLTCIYRFLSRFFGFRVAIGSGGGGGGGGRARANVFNTTGNAATNGQSGNIETQGDGTQ 120

Query: 121 ----------PQSDAGCQANKE-DGNQRQSNSSSNSSGASRESEKPLAITMGS 147
                      Q+D+G   N     N   SNS +N S  S ESE PL  +M S
Sbjct: 121 DEFEGPTITVEQNDSGGNGNTAIKRNLSSSNSINNMSFRSHESELPLTSSMAS 173

[Close]

BLAST of CmoCh02G006490 vs. TrEMBL
Match: A0A151TLJ9_CAJCA (Uncharacterized protein (Fragment) OS=Cajanus cajan GN=KK1_024231 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 7.9e-19
Identity = 53/113 (46.90%), Postives = 71/113 (62.83%), Query Frame = 1


Query: 1   MSLVDPSIGRVLIWIVTFILFLSVLSGGGCLLMYITLPETEN-TAWLPVAGLSLVCLPWF 60
           M + DPS GR  IWI++ +LF+S+++GG CL+ Y+ LPE+E  ++W+P  G+SLVCLPW 
Sbjct: 2   MPVSDPSSGRTFIWIISGLLFMSIVAGGACLVAYLLLPESETASSWIPQIGVSLVCLPWM 61

Query: 61  FWFLTFLYRIISRACGFRVSLG--------LVVNEDAAATNNENADNNTHNES 105
           FW LTFLYRI SR  G RVS+G        +  N D     +   DNN    S
Sbjct: 62  FWLLTFLYRIFSRIFGCRVSIGGGGSGGNWVAANSDVEVAPDAKGDNNLRRVS 114

[Close]

BLAST of CmoCh02G006490 vs. TrEMBL
Match: A0A0S3QY54_PHAAN (Uncharacterized protein (Fragment) OS=Vigna angularis var. angularis GN=Vigan.01G070600 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 1.8e-18
Identity = 49/105 (46.67%), Postives = 72/105 (68.57%), Query Frame = 1


Query: 1   MSLVDPSIGRVLIWIVTFILFLSVLSGGGCLLMYITLPETE-NTAWLPVAGLSLVCLPWF 60
           MS  DPS GR  IWI+T +LF+S+++GG CL+ Y+ LPE+E +++W+P  G++LVCLPW 
Sbjct: 1   MSGSDPSPGRTFIWIITGLLFISIVAGGACLVAYMLLPESETSSSWIPEIGVALVCLPWL 60

Query: 61  FWFLTFLYRIISRACGFRVSLGLVVNEDAAATNNENADNNTHNES 105
           FW LTF YR++SR  G RV++G V + D    +      N + +S
Sbjct: 61  FWLLTFFYRVLSRTFGCRVTMGGVGSADVEVASRAKGAGNLNRDS 105

[Close]

BLAST of CmoCh02G006490 vs. TAIR10
Match: AT4G30770.1 (AT4G30770.1 Putative membrane lipoprotein)

HSP 1 Score: 90.9 bits (224), Expect = 7.1e-19
Identity = 69/164 (42.07%), Postives = 88/164 (53.66%), Query Frame = 1


Query: 1   MSLVDPSIGRVLIWIVTFILFLSVLSGGGCLLMYITLPETENTAWLPVAGLSLVCLPWFF 60
           M + DP  G+  I ++T  LFLS+  GGGCL+ Y  LP      WL   G+  VCLPWFF
Sbjct: 1   MPVPDPRAGQAFICLITLFLFLSIAVGGGCLIAYTILPYPP--VWLSYLGIVFVCLPWFF 60

Query: 61  WFLTFLYRIISRACGFRVSLGLVVNEDAAATNNENADNNTHN--------ESPQSD---- 120
           W LTF YRI+SR  GFR+ +G   N      NN N +  T +        ESP  D    
Sbjct: 61  WILTFAYRIVSRTFGFRMVVGSGGNN-----NNANGETMTRDLDPPEQSLESPDDDDPEP 120

Query: 121 ----AGCQANKEDGNQ--RQSNSSSNSSGASRESEKPLAITMGS 147
                G      +GNQ  ++ ++SSNS+ AS ESE PLAI+M S
Sbjct: 121 IAHPQGQVLVSIEGNQSKKRMSTSSNSTIASHESEMPLAISMAS 157

[Close]

BLAST of CmoCh02G006490 vs. NCBI nr
Match: gi|778670296|ref|XP_011649431.1| (PREDICTED: putative uncharacterized protein DDB_G0284715 [Cucumis sativus])

HSP 1 Score: 173.7 bits (439), Expect = 2.3e-40
Identity = 99/153 (64.71%), Postives = 116/153 (75.82%), Query Frame = 1


Query: 1   MSLVDPSIGRVLIWIVTFILFLSVLSGGGCLLMYITLPETENTAWLPVAGLSLVCLPWFF 60
           MSLV+PS GR  IWIVT  LF S+LSGGGCLLMY+ LPETE TAWLP+ GLSLVCLPWFF
Sbjct: 1   MSLVNPSAGRAFIWIVTCFLFFSILSGGGCLLMYMILPETETTAWLPITGLSLVCLPWFF 60

Query: 61  WFLTFLYRIISRACGFRVSLGLVVNEDAAATNNENADNNTHN-----ESPQSDAGCQANK 120
           W LTF YR++SRACGFRVSLG+  +    ++NN NA+NN +N     ES Q D G + N+
Sbjct: 61  WLLTFFYRVLSRACGFRVSLGIGAD---VSSNNANANNNNNNNASSAESAQQDVGERDNE 120

Query: 121 EDGN--QRQSNSSSNSSGASRESEKPLAITMGS 147
           ++ N  QR SNSSSN+S  SRESE PLAITM S
Sbjct: 121 DNNNADQRHSNSSSNNSIVSRESEMPLAITMAS 150

[Close]

BLAST of CmoCh02G006490 vs. NCBI nr
Match: gi|659121907|ref|XP_008460874.1| (PREDICTED: putative uncharacterized transmembrane protein DDB_G0283059 [Cucumis melo])

HSP 1 Score: 170.2 bits (430), Expect = 2.6e-39
Identity = 97/153 (63.40%), Postives = 116/153 (75.82%), Query Frame = 1


Query: 1   MSLVDPSIGRVLIWIVTFILFLSVLSGGGCLLMYITLPETENTAWLPVAGLSLVCLPWFF 60
           MSLV+PS GR  IWIVT  LF S++SGGGCLLMY+ LPE+E+T WLP+ GLSLVCLPWFF
Sbjct: 1   MSLVNPSAGRAFIWIVTCFLFFSIISGGGCLLMYMILPESESTEWLPITGLSLVCLPWFF 60

Query: 61  WFLTFLYRIISRACGFRVSLGLVVNEDAAATN-NENADNNTHN----ESPQSDAGCQANK 120
           W LTF YR+ISRACG+RVSLG    ED    N N+N +NN +N    ESP+ D G + N+
Sbjct: 61  WLLTFFYRVISRACGYRVSLG--TGEDVGTNNVNDNNNNNNNNASSAESPRQDVGERGNE 120

Query: 121 EDGN--QRQSNSSSNSSGASRESEKPLAITMGS 147
           ++ N  QR+SNSSSN+S  SRESE PLAITM S
Sbjct: 121 DNNNVDQRKSNSSSNNSIVSRESEMPLAITMAS 151

[Close]

BLAST of CmoCh02G006490 vs. NCBI nr
Match: gi|1009146975|ref|XP_015891162.1| (PREDICTED: uncharacterized protein LOC107425658 [Ziziphus jujuba])

HSP 1 Score: 107.8 bits (268), Expect = 1.6e-20
Identity = 72/176 (40.91%), Postives = 94/176 (53.41%), Query Frame = 1


Query: 1   MSLVDPSIGRVLIWIVTFILFLSVLSGGGCLLMYITLPETENTAWLPVAGLSLVCLPWFF 60
           M + DP  G   IW+V   LF+ +  GGGCL+ Y+ LP ++  +WL  AG++LVCLPW F
Sbjct: 1   MPVKDPRAGHAFIWLVASFLFICIAIGGGCLMTYMVLPHSDTQSWLLAAGITLVCLPWLF 60

Query: 61  WFLTFLYRIISRACGFRVSLGLV-VNEDAAATNNENADNNT----HNESPQSDA--GCQA 120
           WFLTF+YR+ISR CG RV +G   V  D      EN++NN      N +P   A  G   
Sbjct: 61  WFLTFVYRVISRVCGLRVGIGKTGVGGDGVDDTRENSNNNNVVDDENIAPVDPAPVGSMG 120

Query: 121 N-----------------KEDGNQ------RQSNSSSNSSGASRESEKPLAITMGS 147
           N                  +DG+       + S SSSNSS  S ESE PLA++M S
Sbjct: 121 NGPTQAQYQGVAAAMAGSNQDGHDHGRKGGKHSRSSSNSSTVSHESEMPLALSMAS 176

[Close]

BLAST of CmoCh02G006490 vs. NCBI nr
Match: gi|502139801|ref|XP_004503911.1| (PREDICTED: uncharacterized protein LOC101508886 [Cicer arietinum])

HSP 1 Score: 107.1 bits (266), Expect = 2.7e-20
Identity = 65/142 (45.77%), Postives = 84/142 (59.15%), Query Frame = 1


Query: 5   DPSIGRVLIWIVTFILFLSVLSGGGCLLMYITLPETENTAWLPVAGLSLVCLPWFFWFLT 64
           D S GR  IW+VTF LF+S+L GG CL+ Y+ +PE+E T+WLP+ G+SLVCLPW FWF T
Sbjct: 5   DSSSGRAFIWLVTFFLFISLLLGGVCLVAYMIIPESETTSWLPIVGVSLVCLPWAFWFFT 64

Query: 65  FLYRIISRACGFRVSLGLVVNEDAAATNNENADNNTHNESPQSDAGCQANKEDGNQRQSN 124
            LYRI SR  GFRV +G+  +       N  A N   N   +     + +   G   ++ 
Sbjct: 65  CLYRIFSRCFGFRVRMGMSNSGGGGGGGNWGATNPPKNADVEVATSSRGSGGGGELNRA- 124

Query: 125 SSSNSSGASRESEKPLAITMGS 147
               SS AS ESE  LA +MGS
Sbjct: 125 ----SSVASHESEMALAKSMGS 141

[Close]

BLAST of CmoCh02G006490 vs. NCBI nr
Match: gi|357520029|ref|XP_003630303.1| (membrane lipoprotein, putative [Medicago truncatula])

HSP 1 Score: 104.8 bits (260), Expect = 1.3e-19
Identity = 67/152 (44.08%), Postives = 85/152 (55.92%), Query Frame = 1


Query: 1   MSLVDPSIGRVLIWIVTFILFLSVLSGGGCLLMYITLPETENTAWLPVAGLSLVCLPWFF 60
           M + DPS GR  IW+VT +LF+S+L+GG CL  Y+ LPE+E ++W+PVAG+  VCLPW F
Sbjct: 1   MPVSDPSSGRAFIWLVTCLLFISLLAGGVCLGAYMLLPESETSSWIPVAGVVFVCLPWAF 60

Query: 61  WFLTFLYRIISRACGFRVSLGLVVNED------AAATNNENADNNTHNESPQSDAGCQAN 120
           WFLT LYRI SR  G RV  G+             +T   N D     +SP+     Q N
Sbjct: 61  WFLTCLYRIFSRCFGLRVGAGIANGGGGGGGNWGGSTTPRNGDVEVATQSPKGVGAAQLN 120

Query: 121 KEDGNQRQSNSSSNSSGASRESEKPLAITMGS 147
           +             SS AS ESE PLA +M S
Sbjct: 121 RV------------SSVASHESELPLAKSMRS 140

The following BLAST results are available for this feature:

BLAST of CmoCh02G006490 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh02G006490 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LJX6_CUCSA	1.6e-40	64.71	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G336080 PE=4 SV=1	[more]
G7LEW9_MEDTR	9.3e-20	44.08	Membrane lipoprotein, putative OS=Medicago truncatula GN=MTR_8g094040 PE=4 SV=1	[more]
B9H4B6_POPTR	7.9e-19	40.46	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s06760g PE=4 SV=1	[more]
A0A151TLJ9_CAJCA	7.9e-19	46.90	Uncharacterized protein (Fragment) OS=Cajanus cajan GN=KK1_024231 PE=4 SV=1	[more]
A0A0S3QY54_PHAAN	1.8e-18	46.67	Uncharacterized protein (Fragment) OS=Vigna angularis var. angularis GN=Vigan.01...	[more]

BLAST of CmoCh02G006490 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G30770.1	7.1e-19	42.07	Putative membrane lipoprotein	[more]

BLAST of CmoCh02G006490 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778670296\|ref\|XP_011649431.1\|	2.3e-40	64.71	PREDICTED: putative uncharacterized protein DDB_G0284715 [Cucumis sativus]	[more]
gi\|659121907\|ref\|XP_008460874.1\|	2.6e-39	63.40	PREDICTED: putative uncharacterized transmembrane protein DDB_G0283059 [Cucumis ...	[more]
gi\|1009146975\|ref\|XP_015891162.1\|	1.6e-20	40.91	PREDICTED: uncharacterized protein LOC107425658 [Ziziphus jujuba]	[more]
gi\|502139801\|ref\|XP_004503911.1\|	2.7e-20	45.77	PREDICTED: uncharacterized protein LOC101508886 [Cicer arietinum]	[more]
gi\|357520029\|ref\|XP_003630303.1\|	1.3e-19	44.08	membrane lipoprotein, putative [Medicago truncatula]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016043	cellular component organization
biological_process	GO:0090304	nucleic acid metabolic process
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:1901363	heterocyclic compound binding
molecular_function	GO:0097159	organic cyclic compound binding
molecular_function	GO:0016740	transferase activity
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh02G006490.1	CmoCh02G006490.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34964	FAMILY NOT NAMED	coord: 2..146 score: 2.6
None	No IPR available	PANTHER	PTHR34964:SF3	MEMBRANE LIPOPROTEIN-RELATED	coord: 2..146 score: 2.6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh02G006490	CmaCh02G006460	Cucurbita maxima (Rimu)	cmacmoB619
CmoCh02G006490	Cla007825	Watermelon (97103) v1	cmowmB578
CmoCh02G006490	MELO3C023225	Melon (DHL92) v3.5.1	cmomeB540
CmoCh02G006490	Lsi10G007520	Bottle gourd (USVL1VR-Ls)	cmolsiB527
CmoCh02G006490	Cp4.1LG05g10420	Cucurbita pepo (Zucchini)	cmocpeB595
CmoCh02G006490	MELO3C023225.2	Melon (DHL92) v3.6.1	cmomedB618
CmoCh02G006490	Cla97C02G026620	Watermelon (97103) v2	cmowmbB605
CmoCh02G006490	Carg11711	Silver-seed gourd	carcmoB1422

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh02G006490	Cucumber (Gy14) v2	cgybcmoB215
CmoCh02G006490	Silver-seed gourd	carcmoB0978
CmoCh02G006490	Cucumber (Chinese Long) v3	cmocucB0680
CmoCh02G006490	Wax gourd	cmowgoB0739
CmoCh02G006490	Cucurbita moschata (Rifu)	cmocmoB414
CmoCh02G006490	Cucumber (Gy14) v1	cgycmoB0638
CmoCh02G006490	Cucurbita maxima (Rimu)	cmacmoB564
CmoCh02G006490	Wild cucumber (PI 183967)	cmocpiB581
CmoCh02G006490	Cucumber (Chinese Long) v2	cmocuB575
CmoCh02G006490	Watermelon (Charleston Gray)	cmowcgB540
CmoCh02G006490	Cucurbita pepo (Zucchini)	cmocpeB573