CmoCh02G005460 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh02G005460
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	RING/U-box superfamily protein, putative
Location	Cmo_Chr02 : 3102812 .. 3103483 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTTTAAGCTCCCACGACTATTTGTCCTACCAATGTTCCATGCGGGGCACTTGCAACGACAGCCTGGGTTCAGACGAGCAACCCATGCAGTTGATGGAACTCCGAGTCGGACATTCGAGAAATCTCATCTCTCGATCCTCTCACCAAATTCTCCAACGGAGTCCCTCAACCCCAATGGGCGATGCTCTGTTCTCTTTTATTCTGCGCGACCAGGAACAACCACCCTTCCTCGAAAACTCCTCCGTGCTTCGGTTTCTGTCTTCCTTCAGAATCCCCATCCCCGCCTGCAATGTCATCTATGACCAGATCTCCTCCTTTGCGCAACACATGACCGCCGACGACGTCCATCTCAACTTCCACATGGTCGTGGATGTGAATGTCAGCGAAATGACATGGGTGGACCTGGACCCATTCCTTGTTGAAGAAAATTCTCCGCCTCCGATGAACGGGGCGCCGGCGTCGGCGATTGAGAGGTTGCAGAGGCAGGAATTTGGTGGGTTGAGGGAGGAAGAGGAGGAGGGGGATTGCAGCGTGTGTTGCGAAGCGCTGAAGGGAGAAGAGGAGGGGAGCAGAATCCCATGTGGTCATGTGTATCACAAATGCTGTATCCTCAAGTGGCTTCAGATCAGCAATTCGTGTCCTCTCTGCAGAACTCAATTACAAGAATAA

mRNA sequence

ATGTCTTTAAGCTCCCACGACTATTTGTCCTACCAATGTTCCATGCGGGGCACTTGCAACGACAGCCTGGGTTCAGACGAGCAACCCATGCAGTTGATGGAACTCCGAGTCGGACATTCGAGAAATCTCATCTCTCGATCCTCTCACCAAATTCTCCAACGGAGTCCCTCAACCCCAATGGGCGATGCTCTGTTCTCTTTTATTCTGCGCGACCAGGAACAACCACCCTTCCTCGAAAACTCCTCCGTGCTTCGGTTTCTGTCTTCCTTCAGAATCCCCATCCCCGCCTGCAATGTCATCTATGACCAGATCTCCTCCTTTGCGCAACACATGACCGCCGACGACGTCCATCTCAACTTCCACATGGTCGTGGATGTGAATGTCAGCGAAATGACATGGGTGGACCTGGACCCATTCCTTGTTGAAGAAAATTCTCCGCCTCCGATGAACGGGGCGCCGGCGTCGGCGATTGAGAGGTTGCAGAGGCAGGAATTTGGTGGGTTGAGGGAGGAAGAGGAGGAGGGGGATTGCAGCGTGTGTTGCGAAGCGCTGAAGGGAGAAGAGGAGGGGAGCAGAATCCCATGTGGTCATGTGTATCACAAATGCTGTATCCTCAAGTGGCTTCAGATCAGCAATTCGTGTCCTCTCTGCAGAACTCAATTACAAGAATAA

Coding sequence (CDS)

ATGTCTTTAAGCTCCCACGACTATTTGTCCTACCAATGTTCCATGCGGGGCACTTGCAACGACAGCCTGGGTTCAGACGAGCAACCCATGCAGTTGATGGAACTCCGAGTCGGACATTCGAGAAATCTCATCTCTCGATCCTCTCACCAAATTCTCCAACGGAGTCCCTCAACCCCAATGGGCGATGCTCTGTTCTCTTTTATTCTGCGCGACCAGGAACAACCACCCTTCCTCGAAAACTCCTCCGTGCTTCGGTTTCTGTCTTCCTTCAGAATCCCCATCCCCGCCTGCAATGTCATCTATGACCAGATCTCCTCCTTTGCGCAACACATGACCGCCGACGACGTCCATCTCAACTTCCACATGGTCGTGGATGTGAATGTCAGCGAAATGACATGGGTGGACCTGGACCCATTCCTTGTTGAAGAAAATTCTCCGCCTCCGATGAACGGGGCGCCGGCGTCGGCGATTGAGAGGTTGCAGAGGCAGGAATTTGGTGGGTTGAGGGAGGAAGAGGAGGAGGGGGATTGCAGCGTGTGTTGCGAAGCGCTGAAGGGAGAAGAGGAGGGGAGCAGAATCCCATGTGGTCATGTGTATCACAAATGCTGTATCCTCAAGTGGCTTCAGATCAGCAATTCGTGTCCTCTCTGCAGAACTCAATTACAAGAATAA

Homology

[Close]

BLAST of CmoCh02G005460 vs. Swiss-Prot
Match: RDUF1_ARATH (E3 ubiquitin-protein ligase RDUF1 OS=Arabidopsis thaliana GN=RDUF1 PE=1 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 3.9e-10
Identity = 31/70 (44.29%), Postives = 41/70 (58.57%), Query Frame = 1


Query: 152 APASAIERLQRQEFGGLREEEEEGDCSVCCEALKGEEEGSRIPCGHVYHKCCILKWLQIS 211
           A  SAIE L R E      + E  +C+VC E  +   EG  +PC H++H  CI+ WL I 
Sbjct: 191 ASKSAIESLPRVEISDCHTKAE-ANCAVCTEVFEAGIEGREMPCKHIFHGDCIVPWLSIR 250

Query: 212 NSCPLCRTQL 222
           NSCP+CR +L
Sbjct: 251 NSCPVCRFEL 259

[Close]

BLAST of CmoCh02G005460 vs. Swiss-Prot
Match: RING1_GOSHI (E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum GN=RING1 PE=1 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 1.1e-09
Identity = 32/81 (39.51%), Postives = 43/81 (53.09%), Query Frame = 1


Query: 143 ENSPPPMNGAPAS--AIERLQRQEFGGLREEEEEGDCSVCCEALKGEEEGSRIPCGHVYH 202
           EN P      PAS  AIE L            E   C+VC +  +   E  ++PC H+YH
Sbjct: 188 ENDPNRYGTPPASKSAIEALPLVNITKSNLNSEFNQCAVCMDDFEEGTEAKQMPCKHLYH 247

Query: 203 KCCILKWLQISNSCPLCRTQL 222
           K C+L WL++ NSCP+CR +L
Sbjct: 248 KDCLLPWLELHNSCPVCRHEL 268

[Close]

BLAST of CmoCh02G005460 vs. Swiss-Prot
Match: RDUF2_ARATH (E3 ubiquitin-protein ligase RDUF2 OS=Arabidopsis thaliana GN=DURF2 PE=1 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 1.5e-09
Identity = 33/94 (35.11%), Postives = 50/94 (53.19%), Query Frame = 1


Query: 128 VSEMTWVDLDPFLVEENSPPPMNGAPASAIERLQRQEFGGLREEEEEGDCSVCCEALKGE 187
           + +++ ++     +  +  PP   A  SAIE L R E        E  +C+VC E  + E
Sbjct: 154 LEQLSQIEASATGIGRSGNPP---ASKSAIESLPRVEISDCHIGSE-ANCAVCTEIFETE 213

Query: 188 EEGSRIPCGHVYHKCCILKWLQISNSCPLCRTQL 222
            E   +PC H++H  CI+ WL I NSCP+CR +L
Sbjct: 214 TEAREMPCKHLFHDDCIVPWLSIRNSCPVCRFEL 243

[Close]

BLAST of CmoCh02G005460 vs. Swiss-Prot
Match: RHC1A_ARATH (Probable E3 ubiquitin-protein ligase RHC1A OS=Arabidopsis thaliana GN=RHC1A PE=2 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 4.3e-09
Identity = 29/76 (38.16%), Postives = 41/76 (53.95%), Query Frame = 1


Query: 146 PPPMNGAPASAIERLQRQEFGGLREEEEEGDCSVCCEALKGEEEGSRIPCGHVYHKCCIL 205
           PPP   AP SAI+ L   +         + +C VC +  +   E  ++PC H+YH  CI+
Sbjct: 162 PPP---APRSAIDALPTIKIAQRHLRSSDSNCPVCKDEFELGSEAKQMPCNHIYHSDCIV 221

Query: 206 KWLQISNSCPLCRTQL 222
            WL   NSCP+CR +L
Sbjct: 222 PWLVQHNSCPVCRQEL 234

[Close]

BLAST of CmoCh02G005460 vs. Swiss-Prot
Match: CIP8_ARATH (E3 ubiquitin-protein ligase CIP8 OS=Arabidopsis thaliana GN=CIP8 PE=1 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 4.3e-09
Identity = 32/71 (45.07%), Postives = 41/71 (57.75%), Query Frame = 1


Query: 152 APASAIERLQRQEFGGLREEEEEGDCSVCCEALKGEEEGSRIPCGHVYHKCCILKWLQIS 211
           A  SAIE L+  E     E E    C+VC + +   E G ++PCGH YH  CI+ WL   
Sbjct: 233 AAKSAIEALETFEVSS-SEGEMVMVCAVCKDGMVMGETGKKLPCGHCYHGDCIVPWLGTR 292

Query: 212 NSCPLCRTQLQ 223
           NSCP+CR QL+
Sbjct: 293 NSCPVCRFQLE 302

[Close]

BLAST of CmoCh02G005460 vs. TrEMBL
Match: A0A0A0LRB0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G432790 PE=4 SV=1)

HSP 1 Score: 203.0 bits (515), Expect = 3.8e-49
Identity = 105/224 (46.88%), Postives = 147/224 (65.62%), Query Frame = 1


Query: 3   LSSHDYLSYQCSMRGTCNDSLGSDEQPMQLMELRVGHSRNLISRSSHQILQRSPSTPMGD 62
           +SS    S++CS+R   N S  ++ QP+Q +ELR+GH   L+   SHQILQ++    + D
Sbjct: 1   MSSPTTFSFRCSIRCNANGSAATNGQPLQFVELRLGHFSQLVLSPSHQILQQTSPILISD 60

Query: 63  ALFSFILRDQEQPPFLENSSVLRFLSSFRIPIPACNVIYDQISSFAQHMTADDVHLNFHM 122
            L  F LR+ E PPF+ +SS+ RFLSS+ I    C+ I+ +ISSFA  + A +++ NFH+
Sbjct: 61  TLIRFPLRELEDPPFISHSSLCRFLSSYNISDAVCDAIFLKISSFAFQLVAGNLNSNFHI 120

Query: 123 VVDVNVSEMTWVDLDPFLVEENSPPPMNGAPASAIERLQRQEFGGLREEEEEGDCSVCCE 182
           +  ++     WVDLDP    E++     GAP SAIERL ++++ G   EE E +CSVC E
Sbjct: 121 IAALDFVYTHWVDLDP---AEDAAAVRQGAPRSAIERLMKEKYDGNGGEEMEDECSVCYE 180

Query: 183 ALKG----EEEGSRIPCGHVYHKCCILKWLQISNSCPLCRTQLQ 223
            L G    E+E SRIPCGH++HK CILKWL+ISNSCPLCR +L+
Sbjct: 181 DLHGKTEKEKEVSRIPCGHMFHKSCILKWLKISNSCPLCRGELE 221

[Close]

BLAST of CmoCh02G005460 vs. TrEMBL
Match: A0A0A0L3Z2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G551140 PE=4 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 5.2e-46
Identity = 105/227 (46.26%), Postives = 144/227 (63.44%), Query Frame = 1


Query: 10  SYQCSMRGTCNDSLGSDEQPMQLMELRVGHSRNLISRSSHQILQRSPSTPMGDALFSFIL 69
           S+QCS+R     SL +D QP+Q ++LR+ H   L+   S QILQ++  T + D L  F L
Sbjct: 8   SFQCSIRRNGKSSLATDGQPLQFVQLRLRHFGQLVHTPSQQILQQTSPTLISDTLIPFSL 67

Query: 70  RDQEQPPFLENSSVLRFLSSFRIPIPACNVIYDQISSFAQH--MTAD-DVHLNFHMVVDV 129
            + E PPF+    + RFLSS+ I    C+ I+  ISSFA    + AD ++++NFH++ DV
Sbjct: 68  WELEDPPFISYFFLFRFLSSYDISAAVCDAIFYNISSFAGQILLAADSNINVNFHIIADV 127

Query: 130 NVSEMTWVDLDPFLVEENSPPPMNGAPASAIERLQRQEFGGLREEEEEGD--CSVCCEAL 189
           ++    WVDLDP    E++P    GA  S IER+ ++++ G   EE+EGD  CSVC E L
Sbjct: 128 DIVYTHWVDLDP---AEDAPAVRKGASTSVIERVMKEKYDGNGGEEKEGDDQCSVCYEQL 187

Query: 190 KG--------EEEGSRIPCGHVYHKCCILKWLQISNSCPLCRTQLQE 224
            G        E+E SRIPCGH+YHK CILKWL+ISNSCPLCR +L+E
Sbjct: 188 YGKRENENEKEKEVSRIPCGHMYHKSCILKWLKISNSCPLCRRELEE 231

[Close]

BLAST of CmoCh02G005460 vs. TrEMBL
Match: A0A0A0LHI3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G889100 PE=4 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 7.5e-29
Identity = 87/227 (38.33%), Postives = 128/227 (56.39%), Query Frame = 1


Query: 3   LSSHDYLSYQCSMRGTCNDSLGSDEQPMQLMELRVGHSRNLISRSSHQILQRSPSTPMGD 62
           +SS   LS  C +R     +        QL+E+R+     L+S  S+Q +Q++  T + +
Sbjct: 1   MSSTTNLSLDCCVRSIPTTA------DKQLVEIRLRRFSKLVSPFSNQNIQQTFPTSISN 60

Query: 63  ALFSFILRDQEQPPFLENSSVLR-FLSSFRIPIPACNVIYDQISSFAQHMTADDVHLNFH 122
           ALF F L + E    LEN S+   FL  F  P  +   I+  ISSFA  + A +++LNFH
Sbjct: 61  ALFHFPLPELE----LENPSLFHDFLLQFLSPADSA-AIFHNISSFALQLAAGNLNLNFH 120

Query: 123 MVVDVNVSEMTWVDLDPFLVEENSPPPMNGAPASAIERLQRQEFG-GLREEEEEGDCSVC 182
           ++  V++     ++L+     + SPP  NG PAS +ERL  +++  G   E   G C VC
Sbjct: 121 LIATVDLLYTISINLN-LNPPQYSPPVRNGVPASVMERLMNEKYDDGNGGEGMGGQCCVC 180

Query: 183 -----CEALKGEEEGSRIPCGHVYHKCCILKWLQISNSCPLCRTQLQ 223
                CE  + +EE +RIPCGHVYHK CILKWL ++NSCPLCR++ +
Sbjct: 181 YEDLNCEREEEKEEATRIPCGHVYHKSCILKWLNVNNSCPLCRSEFR 215

[Close]

BLAST of CmoCh02G005460 vs. TrEMBL
Match: A0A0A0LHS2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G130680 PE=4 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 6.4e-28
Identity = 95/227 (41.85%), Postives = 123/227 (54.19%), Query Frame = 1


Query: 12  QCSMRGTCNDSLGSDEQPMQLMELRVGHSRNLISRS------SHQILQRSPSTPMGDALF 71
           QCS  G  N          Q + +R+     LIS+S         IL+++P T +G+ALF
Sbjct: 10  QCSFSGYPNTD--------QTLIVRLRFCSRLISQSLAPEIVPDVILEQTPFTLIGEALF 69

Query: 72  SFI-LRDQEQPPFLENSSVLRFLSSFRIPIPACNVIYDQISSFAQHMTADDVHLNFHMVV 131
           S   L+   Q   LE   V  FL SF +    C ++   I SFAQ    ++    F +  
Sbjct: 70  SLSNLQYPLQQQELEYM-VNEFLRSFNLRSSVCRIVSHNILSFAQQFDINNEC--FKIET 129

Query: 132 DVNVSEMTWVDLDPFLV------EENSPPPMNGAPASAIERLQRQEFGGLREEEEE--GD 191
           +V+  +  W +  P L       EE  PP   GA  SAIER+++Q+F G R EEEE  GD
Sbjct: 130 NVDYIKEYWTEAAPELYPISTVGEEGLPP--RGASESAIERVKKQKFDGFRGEEEEEIGD 189

Query: 192 CSVCCEALKGEE-EGSRIPCGHVYHKCCILKWLQISNSCPLCRTQLQ 223
           CSVCCE +K +  E  RIPCGHVYHK CILKWL+ISNSCPLCR  L+
Sbjct: 190 CSVCCEEIKRKGGEVRRIPCGHVYHKSCILKWLEISNSCPLCRAALE 223

[Close]

BLAST of CmoCh02G005460 vs. TrEMBL
Match: A0A0A0K696_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G026750 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 5.4e-19
Identity = 66/205 (32.20%), Postives = 104/205 (50.73%), Query Frame = 1


Query: 32  LMELRVGHSRNLISRSS-----HQILQRSPSTPMGDALFSFILRDQEQPPFLENSSVLRF 91
           ++++ +   + +IS S      H++L ++P  P  +ALF   LR  + P F     + + 
Sbjct: 23  VLQVNISFIQQIISVSPLTGRPHEVLHQTPRIPYHNALFYLSLRQLQSPLFY----ITQI 82

Query: 92  LSSFRIPIPACNVIYDQISSFAQHMTADDVHLNFHMVVDVNVSEMTWVDL---------D 151
           LSS  I   A   +  +I+S    M   +   NFH++ +V+   + W+           +
Sbjct: 83  LSSLNIRPAASQNMARRIASHILQMPDRNSETNFHILAEVDFIRLIWLPSMGGGGAGAEE 142

Query: 152 PFLVEENSPPPMNGAPASAIERLQRQEFGGLREEEEEGDCSVCCEALKGEE-EGSRIPCG 211
             +++E  P    G   +  ERL+ +E     + EE GDCS+C + L  E+ E  RIPCG
Sbjct: 143 TVVLDEAPPAVKRGVGVARGERLRSEE-----KMEELGDCSICLDELSCEKREVMRIPCG 202

Query: 212 HVYHKCCILKWLQISNSCPLCRTQL 222
           HVYH+ CI KWL+  NSCPLCR  L
Sbjct: 203 HVYHESCIFKWLENHNSCPLCRKPL 218

[Close]

BLAST of CmoCh02G005460 vs. TAIR10
Match: AT3G46620.1 (AT3G46620.1 zinc finger (C3HC4-type RING finger) family protein)

HSP 1 Score: 66.6 bits (161), Expect = 2.2e-11
Identity = 31/70 (44.29%), Postives = 41/70 (58.57%), Query Frame = 1


Query: 152 APASAIERLQRQEFGGLREEEEEGDCSVCCEALKGEEEGSRIPCGHVYHKCCILKWLQIS 211
           A  SAIE L R E      + E  +C+VC E  +   EG  +PC H++H  CI+ WL I 
Sbjct: 191 ASKSAIESLPRVEISDCHTKAE-ANCAVCTEVFEAGIEGREMPCKHIFHGDCIVPWLSIR 250

Query: 212 NSCPLCRTQL 222
           NSCP+CR +L
Sbjct: 251 NSCPVCRFEL 259

[Close]

BLAST of CmoCh02G005460 vs. TAIR10
Match: AT5G59550.1 (AT5G59550.1 zinc finger (C3HC4-type RING finger) family protein)

HSP 1 Score: 64.7 bits (156), Expect = 8.3e-11
Identity = 33/94 (35.11%), Postives = 50/94 (53.19%), Query Frame = 1


Query: 128 VSEMTWVDLDPFLVEENSPPPMNGAPASAIERLQRQEFGGLREEEEEGDCSVCCEALKGE 187
           + +++ ++     +  +  PP   A  SAIE L R E        E  +C+VC E  + E
Sbjct: 154 LEQLSQIEASATGIGRSGNPP---ASKSAIESLPRVEISDCHIGSE-ANCAVCTEIFETE 213

Query: 188 EEGSRIPCGHVYHKCCILKWLQISNSCPLCRTQL 222
            E   +PC H++H  CI+ WL I NSCP+CR +L
Sbjct: 214 TEAREMPCKHLFHDDCIVPWLSIRNSCPVCRFEL 243

[Close]

BLAST of CmoCh02G005460 vs. TAIR10
Match: AT2G40830.2 (AT2G40830.2 RING-H2 finger C1A)

HSP 1 Score: 63.2 bits (152), Expect = 2.4e-10
Identity = 29/76 (38.16%), Postives = 41/76 (53.95%), Query Frame = 1


Query: 146 PPPMNGAPASAIERLQRQEFGGLREEEEEGDCSVCCEALKGEEEGSRIPCGHVYHKCCIL 205
           PPP   AP SAI+ L   +         + +C VC +  +   E  ++PC H+YH  CI+
Sbjct: 162 PPP---APRSAIDALPTIKIAQRHLRSSDSNCPVCKDEFELGSEAKQMPCNHIYHSDCIV 221

Query: 206 KWLQISNSCPLCRTQL 222
            WL   NSCP+CR +L
Sbjct: 222 PWLVQHNSCPVCRQEL 234

[Close]

BLAST of CmoCh02G005460 vs. TAIR10
Match: AT5G64920.1 (AT5G64920.1 COP1-interacting protein 8)

HSP 1 Score: 63.2 bits (152), Expect = 2.4e-10
Identity = 32/71 (45.07%), Postives = 41/71 (57.75%), Query Frame = 1


Query: 152 APASAIERLQRQEFGGLREEEEEGDCSVCCEALKGEEEGSRIPCGHVYHKCCILKWLQIS 211
           A  SAIE L+  E     E E    C+VC + +   E G ++PCGH YH  CI+ WL   
Sbjct: 233 AAKSAIEALETFEVSS-SEGEMVMVCAVCKDGMVMGETGKKLPCGHCYHGDCIVPWLGTR 292

Query: 212 NSCPLCRTQLQ 223
           NSCP+CR QL+
Sbjct: 293 NSCPVCRFQLE 302

[Close]

BLAST of CmoCh02G005460 vs. TAIR10
Match: AT1G45180.1 (AT1G45180.1 RING/U-box superfamily protein)

HSP 1 Score: 62.4 bits (150), Expect = 4.1e-10
Identity = 38/109 (34.86%), Postives = 57/109 (52.29%), Query Frame = 1


Query: 113 ADDVHLNFHMVVDVNVSEMTWVDLDPFLVEENSPPPMNGAPASAIE-RLQRQEF-GGLRE 172
           A D+H  +  +  ++V  MT+ +L    +EE       G     I  RL++Q++    R 
Sbjct: 529 AADIHDRYRDM-RLDVDNMTYEEL--LSLEERIGDVCTGLNEETISNRLKQQKYKSSTRS 588

Query: 173 EEEEGDCSVCCEALKGEEEGSRIPCGHVYHKCCILKWLQISNSCPLCRT 220
            +E   C VC E  K EEE  R+ CGH +H  CI +WL+  N CP+C+T
Sbjct: 589 SQEVEPCCVCQEEYKEEEEIGRLECGHDFHSQCIKEWLKQKNLCPICKT 634

[Close]

BLAST of CmoCh02G005460 vs. NCBI nr
Match: gi|778674460|ref|XP_011650219.1| (PREDICTED: RING-H2 finger protein ATL16-like [Cucumis sativus])

HSP 1 Score: 203.0 bits (515), Expect = 5.5e-49
Identity = 105/224 (46.88%), Postives = 147/224 (65.62%), Query Frame = 1


Query: 3   LSSHDYLSYQCSMRGTCNDSLGSDEQPMQLMELRVGHSRNLISRSSHQILQRSPSTPMGD 62
           +SS    S++CS+R   N S  ++ QP+Q +ELR+GH   L+   SHQILQ++    + D
Sbjct: 1   MSSPTTFSFRCSIRCNANGSAATNGQPLQFVELRLGHFSQLVLSPSHQILQQTSPILISD 60

Query: 63  ALFSFILRDQEQPPFLENSSVLRFLSSFRIPIPACNVIYDQISSFAQHMTADDVHLNFHM 122
            L  F LR+ E PPF+ +SS+ RFLSS+ I    C+ I+ +ISSFA  + A +++ NFH+
Sbjct: 61  TLIRFPLRELEDPPFISHSSLCRFLSSYNISDAVCDAIFLKISSFAFQLVAGNLNSNFHI 120

Query: 123 VVDVNVSEMTWVDLDPFLVEENSPPPMNGAPASAIERLQRQEFGGLREEEEEGDCSVCCE 182
           +  ++     WVDLDP    E++     GAP SAIERL ++++ G   EE E +CSVC E
Sbjct: 121 IAALDFVYTHWVDLDP---AEDAAAVRQGAPRSAIERLMKEKYDGNGGEEMEDECSVCYE 180

Query: 183 ALKG----EEEGSRIPCGHVYHKCCILKWLQISNSCPLCRTQLQ 223
            L G    E+E SRIPCGH++HK CILKWL+ISNSCPLCR +L+
Sbjct: 181 DLHGKTEKEKEVSRIPCGHMFHKSCILKWLKISNSCPLCRGELE 221

[Close]

BLAST of CmoCh02G005460 vs. NCBI nr
Match: gi|700199693|gb|KGN54851.1| (hypothetical protein Csa_4G551140 [Cucumis sativus])

HSP 1 Score: 192.6 bits (488), Expect = 7.5e-46
Identity = 105/227 (46.26%), Postives = 144/227 (63.44%), Query Frame = 1


Query: 10  SYQCSMRGTCNDSLGSDEQPMQLMELRVGHSRNLISRSSHQILQRSPSTPMGDALFSFIL 69
           S+QCS+R     SL +D QP+Q ++LR+ H   L+   S QILQ++  T + D L  F L
Sbjct: 8   SFQCSIRRNGKSSLATDGQPLQFVQLRLRHFGQLVHTPSQQILQQTSPTLISDTLIPFSL 67

Query: 70  RDQEQPPFLENSSVLRFLSSFRIPIPACNVIYDQISSFAQH--MTAD-DVHLNFHMVVDV 129
            + E PPF+    + RFLSS+ I    C+ I+  ISSFA    + AD ++++NFH++ DV
Sbjct: 68  WELEDPPFISYFFLFRFLSSYDISAAVCDAIFYNISSFAGQILLAADSNINVNFHIIADV 127

Query: 130 NVSEMTWVDLDPFLVEENSPPPMNGAPASAIERLQRQEFGGLREEEEEGD--CSVCCEAL 189
           ++    WVDLDP    E++P    GA  S IER+ ++++ G   EE+EGD  CSVC E L
Sbjct: 128 DIVYTHWVDLDP---AEDAPAVRKGASTSVIERVMKEKYDGNGGEEKEGDDQCSVCYEQL 187

Query: 190 KG--------EEEGSRIPCGHVYHKCCILKWLQISNSCPLCRTQLQE 224
            G        E+E SRIPCGH+YHK CILKWL+ISNSCPLCR +L+E
Sbjct: 188 YGKRENENEKEKEVSRIPCGHMYHKSCILKWLKISNSCPLCRRELEE 231

[Close]

BLAST of CmoCh02G005460 vs. NCBI nr
Match: gi|659132530|ref|XP_008466247.1| (PREDICTED: uncharacterized protein LOC103503717 [Cucumis melo])

HSP 1 Score: 152.1 bits (383), Expect = 1.1e-33
Identity = 100/230 (43.48%), Postives = 137/230 (59.57%), Query Frame = 1


Query: 3   LSSHDYLSYQCSMRGTCNDSLGSDEQPMQLMELRVGHSRNLISRSSHQILQRSPSTPMGD 62
           +SS   LS +C +  +   +  +DEQ   L+E+R+     L+S SS+QI+Q++  TP+ D
Sbjct: 1   MSSTTTLSLECCIHSSVATT--ADEQ---LVEIRLRRYSKLVSPSSNQIIQQTFPTPISD 60

Query: 63  ALFSFILRDQE--QPPFLENSSVLRFLSSFRIPIPA-CNVIYDQISSFAQHMTADDVHLN 122
           ALF F L + E   PPF  +  +L+FLS      PA    I+  ISSFA  + A +++LN
Sbjct: 61  ALFHFPLPELELENPPFFFHDLLLQFLS------PADSTAIFHNISSFALQLAAGNLNLN 120

Query: 123 FHMVVDVNVSEMTWVDLDPFLVEENSPPPMNGAPASAIERLQRQEFGGLREEEEEGD-CS 182
           FH++  V++     VDLD     + SP   NGAPAS IERL  +++      EE GD C 
Sbjct: 121 FHLIATVDLLYTISVDLD-LDPPQYSPLVRNGAPASVIERLMDEKYDDGNGREEMGDQCC 180

Query: 183 VCCEAL------KGEEEGSRIPCGHVYHKCCILKWLQISNSCPLCRTQLQ 223
           VC E L      + EEE +RIPCGHVYHK CILKWL I+NSCPLCR + +
Sbjct: 181 VCYEDLNCEREEEKEEEVTRIPCGHVYHKYCILKWLNINNSCPLCRREFR 218

[Close]

BLAST of CmoCh02G005460 vs. NCBI nr
Match: gi|659121671|ref|XP_008460768.1| (PREDICTED: E3 ubiquitin-protein ligase RING1-like [Cucumis melo])

HSP 1 Score: 136.7 bits (343), Expect = 4.9e-29
Identity = 102/226 (45.13%), Postives = 126/226 (55.75%), Query Frame = 1


Query: 1   MSLSSHDYLSYQCSMRGTCNDSLGSDEQPMQLMELRVGHSRNLISRSSHQILQRSPSTPM 60
           MSLS+    S+QCS   T N            +  R G+S  LI     QILQ++PS  M
Sbjct: 1   MSLSTSS--SFQCSFSATPNTD--------HFLICRFGYSSRLIIVD--QILQQTPSILM 60

Query: 61  GDALFSFI-LRDQEQPPFLENSSVLRFLSSFRIP--IPACNVIYDQISSFAQHMTADDVH 120
           G+ L  F  L   EQ   +E   V  FL SF +     A   I  +I SFA  +   +VH
Sbjct: 61  GETLIPFSNLWHPEQQQSIE-FLVNEFLGSFNLHSFASARRTICRKILSFA--LQFHNVH 120

Query: 121 LNFHMVVDVNVSEMTWVDLDPFLVEENSPPPMNGAPASAIERLQRQEFGGLREEEEEGDC 180
            +F +  +V   E   +    F  E  SPP   GAP SAIERL++++F  L +EEE GDC
Sbjct: 121 GSFKIEANVEHVEDLIIGEQGFQ-ETPSPPRTTGAPESAIERLRKEKFDVLNKEEEIGDC 180

Query: 181 SVCCEALKGE-EEGSRIPCGHVYHKCCILKWLQISNSCPLCRTQLQ 223
           SVC E LKG+ +E SRIPCGHVYHK CIL WLQI+NSCPLCR  LQ
Sbjct: 181 SVCYEELKGQGKEVSRIPCGHVYHKSCILTWLQINNSCPLCRAPLQ 210

[Close]

BLAST of CmoCh02G005460 vs. NCBI nr
Match: gi|778689036|ref|XP_011652885.1| (PREDICTED: RING-H2 finger protein ATL66-like [Cucumis sativus])

HSP 1 Score: 135.6 bits (340), Expect = 1.1e-28
Identity = 87/227 (38.33%), Postives = 128/227 (56.39%), Query Frame = 1


Query: 3   LSSHDYLSYQCSMRGTCNDSLGSDEQPMQLMELRVGHSRNLISRSSHQILQRSPSTPMGD 62
           +SS   LS  C +R     +        QL+E+R+     L+S  S+Q +Q++  T + +
Sbjct: 1   MSSTTNLSLDCCVRSIPTTA------DKQLVEIRLRRFSKLVSPFSNQNIQQTFPTSISN 60

Query: 63  ALFSFILRDQEQPPFLENSSVLR-FLSSFRIPIPACNVIYDQISSFAQHMTADDVHLNFH 122
           ALF F L + E    LEN S+   FL  F  P  +   I+  ISSFA  + A +++LNFH
Sbjct: 61  ALFHFPLPELE----LENPSLFHDFLLQFLSPADSA-AIFHNISSFALQLAAGNLNLNFH 120

Query: 123 MVVDVNVSEMTWVDLDPFLVEENSPPPMNGAPASAIERLQRQEFG-GLREEEEEGDCSVC 182
           ++  V++     ++L+     + SPP  NG PAS +ERL  +++  G   E   G C VC
Sbjct: 121 LIATVDLLYTISINLN-LNPPQYSPPVRNGVPASVMERLMNEKYDDGNGGEGMGGQCCVC 180

Query: 183 -----CEALKGEEEGSRIPCGHVYHKCCILKWLQISNSCPLCRTQLQ 223
                CE  + +EE +RIPCGHVYHK CILKWL ++NSCPLCR++ +
Sbjct: 181 YEDLNCEREEEKEEATRIPCGHVYHKSCILKWLNVNNSCPLCRSEFR 215

The following BLAST results are available for this feature:

BLAST of CmoCh02G005460 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RDUF1_ARATH	3.9e-10	44.29	E3 ubiquitin-protein ligase RDUF1 OS=Arabidopsis thaliana GN=RDUF1 PE=1 SV=1	[more]
RING1_GOSHI	1.1e-09	39.51	E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum GN=RING1 PE=1 SV=1	[more]
RDUF2_ARATH	1.5e-09	35.11	E3 ubiquitin-protein ligase RDUF2 OS=Arabidopsis thaliana GN=DURF2 PE=1 SV=1	[more]
RHC1A_ARATH	4.3e-09	38.16	Probable E3 ubiquitin-protein ligase RHC1A OS=Arabidopsis thaliana GN=RHC1A PE=2...	[more]
CIP8_ARATH	4.3e-09	45.07	E3 ubiquitin-protein ligase CIP8 OS=Arabidopsis thaliana GN=CIP8 PE=1 SV=1	[more]

BLAST of CmoCh02G005460 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LRB0_CUCSA	3.8e-49	46.88	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G432790 PE=4 SV=1	[more]
A0A0A0L3Z2_CUCSA	5.2e-46	46.26	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G551140 PE=4 SV=1	[more]
A0A0A0LHI3_CUCSA	7.5e-29	38.33	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G889100 PE=4 SV=1	[more]
A0A0A0LHS2_CUCSA	6.4e-28	41.85	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G130680 PE=4 SV=1	[more]
A0A0A0K696_CUCSA	5.4e-19	32.20	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G026750 PE=4 SV=1	[more]

BLAST of CmoCh02G005460 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G46620.1	2.2e-11	44.29	zinc finger (C3HC4-type RING finger) family protein	[more]
AT5G59550.1	8.3e-11	35.11	zinc finger (C3HC4-type RING finger) family protein	[more]
AT2G40830.2	2.4e-10	38.16	RING-H2 finger C1A	[more]
AT5G64920.1	2.4e-10	45.07	COP1-interacting protein 8	[more]
AT1G45180.1	4.1e-10	34.86	RING/U-box superfamily protein	[more]

BLAST of CmoCh02G005460 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778674460\|ref\|XP_011650219.1\|	5.5e-49	46.88	PREDICTED: RING-H2 finger protein ATL16-like [Cucumis sativus]	[more]
gi\|700199693\|gb\|KGN54851.1\|	7.5e-46	46.26	hypothetical protein Csa_4G551140 [Cucumis sativus]	[more]
gi\|659132530\|ref\|XP_008466247.1\|	1.1e-33	43.48	PREDICTED: uncharacterized protein LOC103503717 [Cucumis melo]	[more]
gi\|659121671\|ref\|XP_008460768.1\|	4.9e-29	45.13	PREDICTED: E3 ubiquitin-protein ligase RING1-like [Cucumis melo]	[more]
gi\|778689036\|ref\|XP_011652885.1\|	1.1e-28	38.33	PREDICTED: RING-H2 finger protein ATL66-like [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001841	Znf_RING
IPR013083	Znf_RING/FYVE/PHD

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding
GO:0008270	zinc ion binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding
molecular_function	GO:0008270	zinc ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh02G005460.1	CmoCh02G005460.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 176..218 score: 6.9
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 177..217 score: 3.
IPR001841	Zinc finger, RING-type	PROFILE	PS50089	ZF_RING_2	coord: 177..218 score: 12
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	G3DSA:3.30.40.10		coord: 172..221 score: 6.2
None	No IPR available	PANTHER	PTHR22763	RING ZINC FINGER PROTEIN	coord: 134..221 score: 4.5
None	No IPR available	PANTHER	PTHR22763:SF46	PROTEIN SAN1	coord: 134..221 score: 4.5
None	No IPR available	unknown	SSF57850	RING/U-box	coord: 171..221 score: 3.53

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh02G005460	Silver-seed gourd	carcmoB1422
CmoCh02G005460	Cucumber (Chinese Long) v3	cmocucB0682
CmoCh02G005460	Cucumber (Chinese Long) v3	cmocucB0685
CmoCh02G005460	Cucumber (Chinese Long) v3	cmocucB0737
CmoCh02G005460	Watermelon (97103) v2	cmowmbB594
CmoCh02G005460	Wax gourd	cmowgoB0759
CmoCh02G005460	Cucurbita moschata (Rifu)	cmocmoB404
CmoCh02G005460	Cucumber (Gy14) v1	cgycmoB0224
CmoCh02G005460	Cucumber (Gy14) v1	cgycmoB1020
CmoCh02G005460	Cucurbita maxima (Rimu)	cmacmoB554
CmoCh02G005460	Cucurbita maxima (Rimu)	cmacmoB619
CmoCh02G005460	Wild cucumber (PI 183967)	cmocpiB576
CmoCh02G005460	Wild cucumber (PI 183967)	cmocpiB623
CmoCh02G005460	Cucumber (Chinese Long) v2	cmocuB571
CmoCh02G005460	Cucumber (Chinese Long) v2	cmocuB617
CmoCh02G005460	Melon (DHL92) v3.5.1	cmomeB575
CmoCh02G005460	Watermelon (Charleston Gray)	cmowcgB518
CmoCh02G005460	Watermelon (Charleston Gray)	cmowcgB532
CmoCh02G005460	Watermelon (97103) v1	cmowmB565
CmoCh02G005460	Watermelon (97103) v1	cmowmB581
CmoCh02G005460	Cucurbita pepo (Zucchini)	cmocpeB595
CmoCh02G005460	Bottle gourd (USVL1VR-Ls)	cmolsiB530
CmoCh02G005460	Cucumber (Gy14) v2	cgybcmoB217
CmoCh02G005460	Cucumber (Gy14) v2	cgybcmoB795