CmoCh02G004880 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh02G004880
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	DNA-directed RNA polymerase subunit beta
Location	Cmo_Chr02 : 2673407 .. 2675092 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAAGAACAAACAATTTTTATTGGAAACATTCCTCTAATGAATTCCCTAGAAACTTCTATAGTAAATGGACTCTACAGAATTGTGATCAGTCAAATATTGCAAAGACCCGATATCTATTACCAGTCAGAATTGGACCATAACGGAATTTCGGTCTATACCGGCACCATAATATCTGATTGGGGAGGAAGATTAGAATTAGAGATTGATCGAAAAGCAAGGATATGGGCTCGTGTGAGTAGGAAACAGAAAATATCTATTCTAGTTCTATCATCAGCTATGGGTTCGAATCTAAGAGAAATTCTCGAGAATGTTTGCTACCCTGAAATTTTTTTGTCTTTCCTGAATGATAAGGAGAAAAAAAAAATTGGATCAAAAGAAAATGCCATTTTGGAGTTTTATCAACAATTTTCTTGTGTAGGTGGAGATCCGGTATTTTCTGAATCCTTATGTAAGGAATTACAAAAGAAATTCTTTCAACAAAGATGTGAATTAGGAAGGATTGGTCGACGAAATCTGAACCAGAGACTTAATCTTGATATACCTGAGAACAATACATTTTTGTTACCGCGAGATATATTGGCAGCTGCAGATCATTTGATTGGACTGAAATTTGGAATGGGTACACTTGACGATATGAATCATTTGAAAAATAAACGGATTCGTTCTGTCGCCGATCTCTTACAAGATCAATTCGGATTGGCTCTAGTTCGTTTAGAAAATATGGTTAGAGGAACTATATGTGGAGCAATTAGACATAAATTGATACCGACTCCTCAGAATTTGGTAACTTCAACTCCATTAACAACCACGTTTGAATCTTTTTTCGGATTACACCCATTATCTCAAGTTTTAGATCGAACTAATCCATTGACACAAATAGTTCATGGGAGAAAATTGAGTTATTTGGGCCCAGGAGGATTGACAGGGCGAACTGCTAGTTTTCGGATACGAGATATACATCCTAGTCATTATGGACGCATTTGCCCAATTGACACGTCTGAAGGAATTAATGTTGGACTTATTGGATCATTAGCAATTCATGCAAGGATTGGTCATTGGGGATCTCTAGAAACTCCATTTTATGAAATTTCTGAGAGATCAAAAAAAGTGCGGATGCTTTATTTATCACCAAGTCGAGATGAATACTATATGGTAGCGACAGGAAATTCTTTGGCACTGAATCCAGGTATTCAGGAAGAACAGATTGTTCCAGCTCGATACCGTCAAGAATTCTTGACTATTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATATCTGCACATGTTTATTATATTAATAAATACAAGTCTTCATACATACTTCAATCGGATTCTACGAATTCTACTAAAAAAAATATAGGTATAGGTAAAATATTTCTCTTCTATGCGAATTTTTTTTTAACAGTGGAATCTACGAAAAAGTTACATGTTGTTAAAAATGAAAATAAAAAAATACAAAAAAAATTGTATATTGTTTCTGCAGATCAAATCCCGAATCTATTTATAGTACCCAATCGGATTGGAATATCATAA

mRNA sequence

ATGCAAGAACAAACAATTTTTATTGGAAACATTCCTCTAATGAATTCCCTAGAAACTTCTATAGTAAATGGACTCTACAGAATTGTGATCAGTCAAATATTGCAAAGACCCGATATCTATTACCAGTCAGAATTGGACCATAACGGAATTTCGGTCTATACCGGCACCATAATATCTGATTGGGGAGGAAGATTAGAATTAGAGATTGATCGAAAAGCAAGGATATGGGCTCGTGTGAGTAGGAAACAGAAAATATCTATTCTAGTTCTATCATCAGCTATGGGTTCGAATCTAAGAGAAATTCTCGAGAATGTTTGCTACCCTGAAATTTTTTTGTCTTTCCTGAATGATAAGGAGAAAAAAAAAATTGGATCAAAAGAAAATGCCATTTTGGAGTTTTATCAACAATTTTCTTGTGTAGGTGGAGATCCGGTATTTTCTGAATCCTTATGTAAGGAATTACAAAAGAAATTCTTTCAACAAAGATGTGAATTAGGAAGGATTGGTCGACGAAATCTGAACCAGAGACTTAATCTTGATATACCTGAGAACAATACATTTTTGTTACCGCGAGATATATTGGCAGCTGCAGATCATTTGATTGGACTGAAATTTGGAATGGGTACACTTGACGATATGAATCATTTGAAAAATAAACGGATTCGTTCTGTCGCCGATCTCTTACAAGATCAATTCGGATTGGCTCTAGTTCGTTTAGAAAATATGGTTAGAGGAACTATATGTGGAGCAATTAGACATAAATTGATACCGACTCCTCAGAATTTGGTAACTTCAACTCCATTAACAACCACGTTTGAATCTTTTTTCGGATTACACCCATTATCTCAAGTTTTAGATCGAACTAATCCATTGACACAAATAGTTCATGGGAGAAAATTGAGTTATTTGGGCCCAGGAGGATTGACAGGGCGAACTGCTAGTTTTCGGATACGAGATATACATCCTAGTCATTATGGACGCATTTGCCCAATTGACACGTCTGAAGGAATTAATGTTGGACTTATTGGATCATTAGCAATTCATGCAAGGATTGGTCATTGGGGATCTCTAGAAACTCCATTTTATGAAATTTCTGAGAGATCAAAAAAAGTGCGGATGCTTTATTTATCACCAAGTCGAGATGAATACTATATGGTAGCGACAGGAAATTCTTTGGCACTGAATCCAGGTATTCAGGAAGAACAGATTGTTCCAGCTCGATACCATCAAATCCCGAATCTATTTATAGTACCCAATCGGATTGGAATATCATAA

Coding sequence (CDS)

ATGCAAGAACAAACAATTTTTATTGGAAACATTCCTCTAATGAATTCCCTAGAAACTTCTATAGTAAATGGACTCTACAGAATTGTGATCAGTCAAATATTGCAAAGACCCGATATCTATTACCAGTCAGAATTGGACCATAACGGAATTTCGGTCTATACCGGCACCATAATATCTGATTGGGGAGGAAGATTAGAATTAGAGATTGATCGAAAAGCAAGGATATGGGCTCGTGTGAGTAGGAAACAGAAAATATCTATTCTAGTTCTATCATCAGCTATGGGTTCGAATCTAAGAGAAATTCTCGAGAATGTTTGCTACCCTGAAATTTTTTTGTCTTTCCTGAATGATAAGGAGAAAAAAAAAATTGGATCAAAAGAAAATGCCATTTTGGAGTTTTATCAACAATTTTCTTGTGTAGGTGGAGATCCGGTATTTTCTGAATCCTTATGTAAGGAATTACAAAAGAAATTCTTTCAACAAAGATGTGAATTAGGAAGGATTGGTCGACGAAATCTGAACCAGAGACTTAATCTTGATATACCTGAGAACAATACATTTTTGTTACCGCGAGATATATTGGCAGCTGCAGATCATTTGATTGGACTGAAATTTGGAATGGGTACACTTGACGATATGAATCATTTGAAAAATAAACGGATTCGTTCTGTCGCCGATCTCTTACAAGATCAATTCGGATTGGCTCTAGTTCGTTTAGAAAATATGGTTAGAGGAACTATATGTGGAGCAATTAGACATAAATTGATACCGACTCCTCAGAATTTGGTAACTTCAACTCCATTAACAACCACGTTTGAATCTTTTTTCGGATTACACCCATTATCTCAAGTTTTAGATCGAACTAATCCATTGACACAAATAGTTCATGGGAGAAAATTGAGTTATTTGGGCCCAGGAGGATTGACAGGGCGAACTGCTAGTTTTCGGATACGAGATATACATCCTAGTCATTATGGACGCATTTGCCCAATTGACACGTCTGAAGGAATTAATGTTGGACTTATTGGATCATTAGCAATTCATGCAAGGATTGGTCATTGGGGATCTCTAGAAACTCCATTTTATGAAATTTCTGAGAGATCAAAAAAAGTGCGGATGCTTTATTTATCACCAAGTCGAGATGAATACTATATGGTAGCGACAGGAAATTCTTTGGCACTGAATCCAGGTATTCAGGAAGAACAGATTGTTCCAGCTCGATACCATCAAATCCCGAATCTATTTATAGTACCCAATCGGATTGGAATATCATAA

Homology

[Close]

BLAST of CmoCh02G004880 vs. Swiss-Prot
Match: RPOB_CUCSA (DNA-directed RNA polymerase subunit beta OS=Cucumis sativus GN=rpoB PE=3 SV=2)

HSP 1 Score: 813.9 bits (2101), Expect = 8.1e-235
Identity = 404/410 (98.54%), Postives = 405/410 (98.78%), Query Frame = 1


Query: 1   MQEQTIFIGNIPLMNSLETSIVNGLYRIVISQILQRPDIYYQSELDHNGISVYTGTIISD 60
           MQEQTIFIGNIPLMNSL TSIVNGLYRIVISQILQ P IYY+SELDHNGISVYTGTIISD
Sbjct: 94  MQEQTIFIGNIPLMNSLGTSIVNGLYRIVISQILQSPGIYYRSELDHNGISVYTGTIISD 153

Query: 61  WGGRLELEIDRKARIWARVSRKQKISILVLSSAMGSNLREILENVCYPEIFLSFLNDKEK 120
           WGGRLELEIDRKARIWARVSRKQKISILVLSSAMGSNLREILENVCYPEIFLSFLNDKEK
Sbjct: 154 WGGRLELEIDRKARIWARVSRKQKISILVLSSAMGSNLREILENVCYPEIFLSFLNDKEK 213

Query: 121 KKIGSKENAILEFYQQFSCVGGDPVFSESLCKELQKKFFQQRCELGRIGRRNLNQRLNLD 180
           KKIGSKENAILEFYQQFSCVGGDPVFSESLCKELQKKFFQQRCELGRIGRRNLNQRLNLD
Sbjct: 214 KKIGSKENAILEFYQQFSCVGGDPVFSESLCKELQKKFFQQRCELGRIGRRNLNQRLNLD 273

Query: 181 IPENNTFLLPRDILAAADHLIGLKFGMGTLDDMNHLKNKRIRSVADLLQDQFGLALVRLE 240
           IPENNTFLL RDILAAADHLIGLKFGMGTLDDMNHLKNKRIRSVADLLQDQFGLALVRLE
Sbjct: 274 IPENNTFLLQRDILAAADHLIGLKFGMGTLDDMNHLKNKRIRSVADLLQDQFGLALVRLE 333

Query: 241 NMVRGTICGAIRHKLIPTPQNLVTSTPLTTTFESFFGLHPLSQVLDRTNPLTQIVHGRKL 300
           NMVRGTICGAIRHKLIPTPQNLVTSTPLTTTFESFFGLHPLSQVLDRTNPLTQIVHGRKL
Sbjct: 334 NMVRGTICGAIRHKLIPTPQNLVTSTPLTTTFESFFGLHPLSQVLDRTNPLTQIVHGRKL 393

Query: 301 SYLGPGGLTGRTASFRIRDIHPSHYGRICPIDTSEGINVGLIGSLAIHARIGHWGSLETP 360
           SYLGPGGLTGRTASFRIRDIHPSHYGRICPIDTSEGINVGLIGSLAIHARIGHWGSLETP
Sbjct: 394 SYLGPGGLTGRTASFRIRDIHPSHYGRICPIDTSEGINVGLIGSLAIHARIGHWGSLETP 453

Query: 361 FYEISERSKKVRMLYLSPSRDEYYMVATGNSLALNPGIQEEQIVPARYHQ 411
           FYEISERSKKVRMLYLSPSRDEYYMVATGNSLALNPGIQEEQIVPARY Q
Sbjct: 454 FYEISERSKKVRMLYLSPSRDEYYMVATGNSLALNPGIQEEQIVPARYRQ 503

[Close]

BLAST of CmoCh02G004880 vs. Swiss-Prot
Match: RPOB_VITVI (DNA-directed RNA polymerase subunit beta OS=Vitis vinifera GN=rpoB PE=3 SV=1)

HSP 1 Score: 790.8 bits (2041), Expect = 7.4e-228
Identity = 386/410 (94.15%), Postives = 402/410 (98.05%), Query Frame = 1


Query: 1   MQEQTIFIGNIPLMNSLETSIVNGLYRIVISQILQRPDIYYQSELDHNGISVYTGTIISD 60
           MQEQTIFIGNIPLMNSL TSIVNGLYRIVI+QILQ P IYY+SELDHNGISVYTGTI+SD
Sbjct: 94  MQEQTIFIGNIPLMNSLGTSIVNGLYRIVINQILQSPGIYYRSELDHNGISVYTGTIVSD 153

Query: 61  WGGRLELEIDRKARIWARVSRKQKISILVLSSAMGSNLREILENVCYPEIFLSFLNDKEK 120
           WGGRLELEIDRKARIWARVSRKQKISILVLSSAMGSNLREILENVCYPEIFLSFLNDKEK
Sbjct: 154 WGGRLELEIDRKARIWARVSRKQKISILVLSSAMGSNLREILENVCYPEIFLSFLNDKEK 213

Query: 121 KKIGSKENAILEFYQQFSCVGGDPVFSESLCKELQKKFFQQRCELGRIGRRNLNQRLNLD 180
           KKIGSKE+AILEFYQQF+CVGGDPVFSESLCKELQKKFFQQRCELGRIGRRN+N+RLNLD
Sbjct: 214 KKIGSKESAILEFYQQFACVGGDPVFSESLCKELQKKFFQQRCELGRIGRRNINRRLNLD 273

Query: 181 IPENNTFLLPRDILAAADHLIGLKFGMGTLDDMNHLKNKRIRSVADLLQDQFGLALVRLE 240
           IP+NNTFLLP+DILAAADHLIG+KFGMG LDDMNHLKNKRIRSVADLLQDQFGLAL+RLE
Sbjct: 274 IPQNNTFLLPQDILAAADHLIGMKFGMGILDDMNHLKNKRIRSVADLLQDQFGLALIRLE 333

Query: 241 NMVRGTICGAIRHKLIPTPQNLVTSTPLTTTFESFFGLHPLSQVLDRTNPLTQIVHGRKL 300
           N+VRGTICGAIRHKLIPTPQNLVTSTP+TTT+ESFFGLHPLSQVLDRTNPLTQIVHGRK 
Sbjct: 334 NVVRGTICGAIRHKLIPTPQNLVTSTPVTTTYESFFGLHPLSQVLDRTNPLTQIVHGRKS 393

Query: 301 SYLGPGGLTGRTASFRIRDIHPSHYGRICPIDTSEGINVGLIGSLAIHARIGHWGSLETP 360
           SYLGPGGLTGRTASFRIRDIHPSHYGRICPIDTSEGINVGLIGSLAIHARIGHWGSLE+P
Sbjct: 394 SYLGPGGLTGRTASFRIRDIHPSHYGRICPIDTSEGINVGLIGSLAIHARIGHWGSLESP 453

Query: 361 FYEISERSKKVRMLYLSPSRDEYYMVATGNSLALNPGIQEEQIVPARYHQ 411
           FYEISERSKKVRMLYLSPSRDEYYMVA GNSLALN GIQEEQ+VPARY Q
Sbjct: 454 FYEISERSKKVRMLYLSPSRDEYYMVAAGNSLALNQGIQEEQVVPARYRQ 503

[Close]

BLAST of CmoCh02G004880 vs. Swiss-Prot
Match: RPOB_GOSBA (DNA-directed RNA polymerase subunit beta OS=Gossypium barbadense GN=rpoB PE=3 SV=1)

HSP 1 Score: 785.0 bits (2026), Expect = 4.0e-226
Identity = 385/410 (93.90%), Postives = 399/410 (97.32%), Query Frame = 1


Query: 1   MQEQTIFIGNIPLMNSLETSIVNGLYRIVISQILQRPDIYYQSELDHNGISVYTGTIISD 60
           MQEQTIFIGNIPLMNSL TSIVNG+YRIVI+QILQ P IYY+SELDHNGISVYTGTIISD
Sbjct: 94  MQEQTIFIGNIPLMNSLGTSIVNGIYRIVINQILQSPGIYYRSELDHNGISVYTGTIISD 153

Query: 61  WGGRLELEIDRKARIWARVSRKQKISILVLSSAMGSNLREILENVCYPEIFLSFLNDKEK 120
           WGGRLELEIDRKARIWARVSRKQKISILVLSSAMGSNLREILENVCYPEIFLSFL DKEK
Sbjct: 154 WGGRLELEIDRKARIWARVSRKQKISILVLSSAMGSNLREILENVCYPEIFLSFLTDKEK 213

Query: 121 KKIGSKENAILEFYQQFSCVGGDPVFSESLCKELQKKFFQQRCELGRIGRRNLNQRLNLD 180
           KKIGSKENAILEFYQQFSCVGGDPVFSESLCKELQKKFFQQRCELGRIGRRN+NQRLNL+
Sbjct: 214 KKIGSKENAILEFYQQFSCVGGDPVFSESLCKELQKKFFQQRCELGRIGRRNMNQRLNLN 273

Query: 181 IPENNTFLLPRDILAAADHLIGLKFGMGTLDDMNHLKNKRIRSVADLLQDQFGLALVRLE 240
           IP+NNTFLLPRDILAAAD LIG+KFGMG LDDMNHLKNKRIRSVADLLQDQFGLALVRLE
Sbjct: 274 IPQNNTFLLPRDILAAADRLIGMKFGMGPLDDMNHLKNKRIRSVADLLQDQFGLALVRLE 333

Query: 241 NMVRGTICGAIRHKLIPTPQNLVTSTPLTTTFESFFGLHPLSQVLDRTNPLTQIVHGRKL 300
           N+VRGTICGAIRHKLIPTPQNLVTSTPLTTT+ESFFGLHPLSQVLDRTNPLTQIVHGRKL
Sbjct: 334 NVVRGTICGAIRHKLIPTPQNLVTSTPLTTTYESFFGLHPLSQVLDRTNPLTQIVHGRKL 393

Query: 301 SYLGPGGLTGRTASFRIRDIHPSHYGRICPIDTSEGINVGLIGSLAIHARIGHWGSLETP 360
           SYLGPGGLTGRTA+FRIRDIHPSHYGRICPIDTSEGINVGLIGSLAIHARIGHWGSLE+P
Sbjct: 394 SYLGPGGLTGRTANFRIRDIHPSHYGRICPIDTSEGINVGLIGSLAIHARIGHWGSLESP 453

Query: 361 FYEISERSKKVRMLYLSPSRDEYYMVATGNSLALNPGIQEEQIVPARYHQ 411
           FY+I ERSKK +MLYLSPSRDEYYMVA GNSLALN GIQEEQ+VPARY Q
Sbjct: 454 FYKIFERSKKAQMLYLSPSRDEYYMVAAGNSLALNQGIQEEQVVPARYRQ 503

[Close]

BLAST of CmoCh02G004880 vs. Swiss-Prot
Match: RPOB_GOSHI (DNA-directed RNA polymerase subunit beta OS=Gossypium hirsutum GN=rpoB PE=3 SV=1)

HSP 1 Score: 785.0 bits (2026), Expect = 4.0e-226
Identity = 385/410 (93.90%), Postives = 399/410 (97.32%), Query Frame = 1


Query: 1   MQEQTIFIGNIPLMNSLETSIVNGLYRIVISQILQRPDIYYQSELDHNGISVYTGTIISD 60
           MQEQTIFIGNIPLMNSL TSIVNG+YRIVI+QILQ P IYY+SELDHNGISVYTGTIISD
Sbjct: 94  MQEQTIFIGNIPLMNSLGTSIVNGIYRIVINQILQSPGIYYRSELDHNGISVYTGTIISD 153

Query: 61  WGGRLELEIDRKARIWARVSRKQKISILVLSSAMGSNLREILENVCYPEIFLSFLNDKEK 120
           WGGRLELEIDRKARIWARVSRKQKISILVLSSAMGSNLREILENVCYPEIFLSFL DKEK
Sbjct: 154 WGGRLELEIDRKARIWARVSRKQKISILVLSSAMGSNLREILENVCYPEIFLSFLTDKEK 213

Query: 121 KKIGSKENAILEFYQQFSCVGGDPVFSESLCKELQKKFFQQRCELGRIGRRNLNQRLNLD 180
           KKIGSKENAILEFYQQFSCVGGDPVFSESLCKELQKKFFQQRCELGRIGRRN+NQRLNL+
Sbjct: 214 KKIGSKENAILEFYQQFSCVGGDPVFSESLCKELQKKFFQQRCELGRIGRRNMNQRLNLN 273

Query: 181 IPENNTFLLPRDILAAADHLIGLKFGMGTLDDMNHLKNKRIRSVADLLQDQFGLALVRLE 240
           IP+NNTFLLPRDILAAAD LIG+KFGMG LDDMNHLKNKRIRSVADLLQDQFGLALVRLE
Sbjct: 274 IPQNNTFLLPRDILAAADRLIGMKFGMGPLDDMNHLKNKRIRSVADLLQDQFGLALVRLE 333

Query: 241 NMVRGTICGAIRHKLIPTPQNLVTSTPLTTTFESFFGLHPLSQVLDRTNPLTQIVHGRKL 300
           N+VRGTICGAIRHKLIPTPQNLVTSTPLTTT+ESFFGLHPLSQVLDRTNPLTQIVHGRKL
Sbjct: 334 NVVRGTICGAIRHKLIPTPQNLVTSTPLTTTYESFFGLHPLSQVLDRTNPLTQIVHGRKL 393

Query: 301 SYLGPGGLTGRTASFRIRDIHPSHYGRICPIDTSEGINVGLIGSLAIHARIGHWGSLETP 360
           SYLGPGGLTGRTA+FRIRDIHPSHYGRICPIDTSEGINVGLIGSLAIHARIGHWGSLE+P
Sbjct: 394 SYLGPGGLTGRTANFRIRDIHPSHYGRICPIDTSEGINVGLIGSLAIHARIGHWGSLESP 453

Query: 361 FYEISERSKKVRMLYLSPSRDEYYMVATGNSLALNPGIQEEQIVPARYHQ 411
           FY+I ERSKK +MLYLSPSRDEYYMVA GNSLALN GIQEEQ+VPARY Q
Sbjct: 454 FYKIFERSKKAQMLYLSPSRDEYYMVAAGNSLALNQGIQEEQVVPARYRQ 503

[Close]

BLAST of CmoCh02G004880 vs. Swiss-Prot
Match: RPOB_BUXMI (DNA-directed RNA polymerase subunit beta OS=Buxus microphylla GN=rpoB PE=3 SV=1)

HSP 1 Score: 783.5 bits (2022), Expect = 1.2e-225
Identity = 384/410 (93.66%), Postives = 398/410 (97.07%), Query Frame = 1


Query: 1   MQEQTIFIGNIPLMNSLETSIVNGLYRIVISQILQRPDIYYQSELDHNGISVYTGTIISD 60
           MQEQTIFIGNIPLMNSL TSIVNG+YRIVI+QILQ P IYY+SELDHNG SVYTGTIISD
Sbjct: 94  MQEQTIFIGNIPLMNSLGTSIVNGIYRIVINQILQSPGIYYRSELDHNGTSVYTGTIISD 153

Query: 61  WGGRLELEIDRKARIWARVSRKQKISILVLSSAMGSNLREILENVCYPEIFLSFLNDKEK 120
           WGGR ELEIDRKARIWARVSRKQKISILVLSSAMGSNLREIL+NVCYPEIFLSF NDKEK
Sbjct: 154 WGGRSELEIDRKARIWARVSRKQKISILVLSSAMGSNLREILDNVCYPEIFLSFPNDKEK 213

Query: 121 KKIGSKENAILEFYQQFSCVGGDPVFSESLCKELQKKFFQQRCELGRIGRRNLNQRLNLD 180
           KKIGSKENAILEFYQQF+CVGGDPVFSESLCKELQKKFFQQRCELGRIGRRN+N+RLNLD
Sbjct: 214 KKIGSKENAILEFYQQFACVGGDPVFSESLCKELQKKFFQQRCELGRIGRRNMNRRLNLD 273

Query: 181 IPENNTFLLPRDILAAADHLIGLKFGMGTLDDMNHLKNKRIRSVADLLQDQFGLALVRLE 240
           IP+NNTFLLPRDILAAAD LIG+KFGMGTLDDMNHLKNKRIRSVADLLQDQFGLALVRLE
Sbjct: 274 IPQNNTFLLPRDILAAADRLIGIKFGMGTLDDMNHLKNKRIRSVADLLQDQFGLALVRLE 333

Query: 241 NMVRGTICGAIRHKLIPTPQNLVTSTPLTTTFESFFGLHPLSQVLDRTNPLTQIVHGRKL 300
           N VRGTICGAIRHKLIPTPQNLVTSTPLTTT+ESFFGLHPLSQVLDRTNPLTQIVHGRK 
Sbjct: 334 NAVRGTICGAIRHKLIPTPQNLVTSTPLTTTYESFFGLHPLSQVLDRTNPLTQIVHGRKS 393

Query: 301 SYLGPGGLTGRTASFRIRDIHPSHYGRICPIDTSEGINVGLIGSLAIHARIGHWGSLETP 360
           SYLGPGGLTGRTASFRIRDIHPSHYGRICPIDTSEGINVGLIGSLAIHARIGHWGSLE+P
Sbjct: 394 SYLGPGGLTGRTASFRIRDIHPSHYGRICPIDTSEGINVGLIGSLAIHARIGHWGSLESP 453

Query: 361 FYEISERSKKVRMLYLSPSRDEYYMVATGNSLALNPGIQEEQIVPARYHQ 411
           FYEISERSKKVRMLYLSPS+DEYYMVA GNSL+LN GIQEEQ+VPARY Q
Sbjct: 454 FYEISERSKKVRMLYLSPSKDEYYMVAAGNSLSLNKGIQEEQVVPARYRQ 503

[Close]

BLAST of CmoCh02G004880 vs. TrEMBL
Match: A0A0S2IG32_CUCPE (DNA-directed RNA polymerase subunit beta OS=Cucurbita pepo subsp. ovifera GN=rpoB PE=3 SV=1)

HSP 1 Score: 817.0 bits (2109), Expect = 1.1e-233
Identity = 405/410 (98.78%), Postives = 406/410 (99.02%), Query Frame = 1


Query: 1   MQEQTIFIGNIPLMNSLETSIVNGLYRIVISQILQRPDIYYQSELDHNGISVYTGTIISD 60
           MQEQTIFIGNIPLMNSL TSIVNGLYRIVISQILQ P IYY+SELDHNGISVYTGTIISD
Sbjct: 94  MQEQTIFIGNIPLMNSLGTSIVNGLYRIVISQILQSPGIYYRSELDHNGISVYTGTIISD 153

Query: 61  WGGRLELEIDRKARIWARVSRKQKISILVLSSAMGSNLREILENVCYPEIFLSFLNDKEK 120
           WGGRLELEIDRKARIWARVSRKQKISILVLSSAMGSNLREILENVCYPEIFLSFLNDKEK
Sbjct: 154 WGGRLELEIDRKARIWARVSRKQKISILVLSSAMGSNLREILENVCYPEIFLSFLNDKEK 213

Query: 121 KKIGSKENAILEFYQQFSCVGGDPVFSESLCKELQKKFFQQRCELGRIGRRNLNQRLNLD 180
           KKIGSKENAILEFYQQFSCVGGDPVFSESLCKELQKKFFQQRCELGRIGRRNLNQRLNLD
Sbjct: 214 KKIGSKENAILEFYQQFSCVGGDPVFSESLCKELQKKFFQQRCELGRIGRRNLNQRLNLD 273

Query: 181 IPENNTFLLPRDILAAADHLIGLKFGMGTLDDMNHLKNKRIRSVADLLQDQFGLALVRLE 240
           IPENNTFLLPRDILAAADHLIGLKFGMGTLDDMNHLKNKRIRSVADLLQDQFGLALVRLE
Sbjct: 274 IPENNTFLLPRDILAAADHLIGLKFGMGTLDDMNHLKNKRIRSVADLLQDQFGLALVRLE 333

Query: 241 NMVRGTICGAIRHKLIPTPQNLVTSTPLTTTFESFFGLHPLSQVLDRTNPLTQIVHGRKL 300
           NMVRGTICGAIRHKLIPTPQNLVTSTPLTTTFESFFGLHPLSQVLDRTNPLTQIVHGRKL
Sbjct: 334 NMVRGTICGAIRHKLIPTPQNLVTSTPLTTTFESFFGLHPLSQVLDRTNPLTQIVHGRKL 393

Query: 301 SYLGPGGLTGRTASFRIRDIHPSHYGRICPIDTSEGINVGLIGSLAIHARIGHWGSLETP 360
           SYLGPGGLTGRTASFRIRDIHPSHYGRICPIDTSEGINVGLIGSLAIHARIGHWGSLETP
Sbjct: 394 SYLGPGGLTGRTASFRIRDIHPSHYGRICPIDTSEGINVGLIGSLAIHARIGHWGSLETP 453

Query: 361 FYEISERSKKVRMLYLSPSRDEYYMVATGNSLALNPGIQEEQIVPARYHQ 411
           FYEISERSKKVRMLYLSPSRDEYYMVATGNSLALNPGIQEEQIVPARY Q
Sbjct: 454 FYEISERSKKVRMLYLSPSRDEYYMVATGNSLALNPGIQEEQIVPARYRQ 503

[Close]

BLAST of CmoCh02G004880 vs. TrEMBL
Match: A0A0S2IGB8_CUCPE (DNA-directed RNA polymerase subunit beta OS=Cucurbita pepo var. ozarkana GN=rpoB PE=3 SV=1)

HSP 1 Score: 817.0 bits (2109), Expect = 1.1e-233
Identity = 405/410 (98.78%), Postives = 406/410 (99.02%), Query Frame = 1


Query: 1   MQEQTIFIGNIPLMNSLETSIVNGLYRIVISQILQRPDIYYQSELDHNGISVYTGTIISD 60
           MQEQTIFIGNIPLMNSL TSIVNGLYRIVISQILQ P IYY+SELDHNGISVYTGTIISD
Sbjct: 94  MQEQTIFIGNIPLMNSLGTSIVNGLYRIVISQILQSPGIYYRSELDHNGISVYTGTIISD 153

Query: 61  WGGRLELEIDRKARIWARVSRKQKISILVLSSAMGSNLREILENVCYPEIFLSFLNDKEK 120
           WGGRLELEIDRKARIWARVSRKQKISILVLSSAMGSNLREILENVCYPEIFLSFLNDKEK
Sbjct: 154 WGGRLELEIDRKARIWARVSRKQKISILVLSSAMGSNLREILENVCYPEIFLSFLNDKEK 213

Query: 121 KKIGSKENAILEFYQQFSCVGGDPVFSESLCKELQKKFFQQRCELGRIGRRNLNQRLNLD 180
           KKIGSKENAILEFYQQFSCVGGDPVFSESLCKELQKKFFQQRCELGRIGRRNLNQRLNLD
Sbjct: 214 KKIGSKENAILEFYQQFSCVGGDPVFSESLCKELQKKFFQQRCELGRIGRRNLNQRLNLD 273

Query: 181 IPENNTFLLPRDILAAADHLIGLKFGMGTLDDMNHLKNKRIRSVADLLQDQFGLALVRLE 240
           IPENNTFLLPRDILAAADHLIGLKFGMGTLDDMNHLKNKRIRSVADLLQDQFGLALVRLE
Sbjct: 274 IPENNTFLLPRDILAAADHLIGLKFGMGTLDDMNHLKNKRIRSVADLLQDQFGLALVRLE 333

Query: 241 NMVRGTICGAIRHKLIPTPQNLVTSTPLTTTFESFFGLHPLSQVLDRTNPLTQIVHGRKL 300
           NMVRGTICGAIRHKLIPTPQNLVTSTPLTTTFESFFGLHPLSQVLDRTNPLTQIVHGRKL
Sbjct: 334 NMVRGTICGAIRHKLIPTPQNLVTSTPLTTTFESFFGLHPLSQVLDRTNPLTQIVHGRKL 393

Query: 301 SYLGPGGLTGRTASFRIRDIHPSHYGRICPIDTSEGINVGLIGSLAIHARIGHWGSLETP 360
           SYLGPGGLTGRTASFRIRDIHPSHYGRICPIDTSEGINVGLIGSLAIHARIGHWGSLETP
Sbjct: 394 SYLGPGGLTGRTASFRIRDIHPSHYGRICPIDTSEGINVGLIGSLAIHARIGHWGSLETP 453

Query: 361 FYEISERSKKVRMLYLSPSRDEYYMVATGNSLALNPGIQEEQIVPARYHQ 411
           FYEISERSKKVRMLYLSPSRDEYYMVATGNSLALNPGIQEEQIVPARY Q
Sbjct: 454 FYEISERSKKVRMLYLSPSRDEYYMVATGNSLALNPGIQEEQIVPARYRQ 503

[Close]

BLAST of CmoCh02G004880 vs. TrEMBL
Match: A0A0S2IEV8_9ROSI (DNA-directed RNA polymerase subunit beta OS=Cucurbita digitata GN=rpoB PE=3 SV=1)

HSP 1 Score: 817.0 bits (2109), Expect = 1.1e-233
Identity = 405/410 (98.78%), Postives = 406/410 (99.02%), Query Frame = 1


Query: 1   MQEQTIFIGNIPLMNSLETSIVNGLYRIVISQILQRPDIYYQSELDHNGISVYTGTIISD 60
           MQEQTIFIGNIPLMNSL TSIVNGLYRIVISQILQ P IYY+SELDHNGISVYTGTIISD
Sbjct: 94  MQEQTIFIGNIPLMNSLGTSIVNGLYRIVISQILQSPGIYYRSELDHNGISVYTGTIISD 153

Query: 61  WGGRLELEIDRKARIWARVSRKQKISILVLSSAMGSNLREILENVCYPEIFLSFLNDKEK 120
           WGGRLELEIDRKARIWARVSRKQKISILVLSSAMGSNLREILENVCYPEIFLSFLNDKEK
Sbjct: 154 WGGRLELEIDRKARIWARVSRKQKISILVLSSAMGSNLREILENVCYPEIFLSFLNDKEK 213

Query: 121 KKIGSKENAILEFYQQFSCVGGDPVFSESLCKELQKKFFQQRCELGRIGRRNLNQRLNLD 180
           KKIGSKENAILEFYQQFSCVGGDPVFSESLCKELQKKFFQQRCELGRIGRRNLNQRLNLD
Sbjct: 214 KKIGSKENAILEFYQQFSCVGGDPVFSESLCKELQKKFFQQRCELGRIGRRNLNQRLNLD 273

Query: 181 IPENNTFLLPRDILAAADHLIGLKFGMGTLDDMNHLKNKRIRSVADLLQDQFGLALVRLE 240
           IPENNTFLLPRDILAAADHLIGLKFGMGTLDDMNHLKNKRIRSVADLLQDQFGLALVRLE
Sbjct: 274 IPENNTFLLPRDILAAADHLIGLKFGMGTLDDMNHLKNKRIRSVADLLQDQFGLALVRLE 333

Query: 241 NMVRGTICGAIRHKLIPTPQNLVTSTPLTTTFESFFGLHPLSQVLDRTNPLTQIVHGRKL 300
           NMVRGTICGAIRHKLIPTPQNLVTSTPLTTTFESFFGLHPLSQVLDRTNPLTQIVHGRKL
Sbjct: 334 NMVRGTICGAIRHKLIPTPQNLVTSTPLTTTFESFFGLHPLSQVLDRTNPLTQIVHGRKL 393

Query: 301 SYLGPGGLTGRTASFRIRDIHPSHYGRICPIDTSEGINVGLIGSLAIHARIGHWGSLETP 360
           SYLGPGGLTGRTASFRIRDIHPSHYGRICPIDTSEGINVGLIGSLAIHARIGHWGSLETP
Sbjct: 394 SYLGPGGLTGRTASFRIRDIHPSHYGRICPIDTSEGINVGLIGSLAIHARIGHWGSLETP 453

Query: 361 FYEISERSKKVRMLYLSPSRDEYYMVATGNSLALNPGIQEEQIVPARYHQ 411
           FYEISERSKKVRMLYLSPSRDEYYMVATGNSLALNPGIQEEQIVPARY Q
Sbjct: 454 FYEISERSKKVRMLYLSPSRDEYYMVATGNSLALNPGIQEEQIVPARYRQ 503

[Close]

BLAST of CmoCh02G004880 vs. TrEMBL
Match: A0A0S2IEF4_9ROSI (DNA-directed RNA polymerase subunit beta OS=Cucurbita cordata GN=rpoB PE=3 SV=1)

HSP 1 Score: 817.0 bits (2109), Expect = 1.1e-233
Identity = 405/410 (98.78%), Postives = 406/410 (99.02%), Query Frame = 1


Query: 1   MQEQTIFIGNIPLMNSLETSIVNGLYRIVISQILQRPDIYYQSELDHNGISVYTGTIISD 60
           MQEQTIFIGNIPLMNSL TSIVNGLYRIVISQILQ P IYY+SELDHNGISVYTGTIISD
Sbjct: 94  MQEQTIFIGNIPLMNSLGTSIVNGLYRIVISQILQSPGIYYRSELDHNGISVYTGTIISD 153

Query: 61  WGGRLELEIDRKARIWARVSRKQKISILVLSSAMGSNLREILENVCYPEIFLSFLNDKEK 120
           WGGRLELEIDRKARIWARVSRKQKISILVLSSAMGSNLREILENVCYPEIFLSFLNDKEK
Sbjct: 154 WGGRLELEIDRKARIWARVSRKQKISILVLSSAMGSNLREILENVCYPEIFLSFLNDKEK 213

Query: 121 KKIGSKENAILEFYQQFSCVGGDPVFSESLCKELQKKFFQQRCELGRIGRRNLNQRLNLD 180
           KKIGSKENAILEFYQQFSCVGGDPVFSESLCKELQKKFFQQRCELGRIGRRNLNQRLNLD
Sbjct: 214 KKIGSKENAILEFYQQFSCVGGDPVFSESLCKELQKKFFQQRCELGRIGRRNLNQRLNLD 273

Query: 181 IPENNTFLLPRDILAAADHLIGLKFGMGTLDDMNHLKNKRIRSVADLLQDQFGLALVRLE 240
           IPENNTFLLPRDILAAADHLIGLKFGMGTLDDMNHLKNKRIRSVADLLQDQFGLALVRLE
Sbjct: 274 IPENNTFLLPRDILAAADHLIGLKFGMGTLDDMNHLKNKRIRSVADLLQDQFGLALVRLE 333

Query: 241 NMVRGTICGAIRHKLIPTPQNLVTSTPLTTTFESFFGLHPLSQVLDRTNPLTQIVHGRKL 300
           NMVRGTICGAIRHKLIPTPQNLVTSTPLTTTFESFFGLHPLSQVLDRTNPLTQIVHGRKL
Sbjct: 334 NMVRGTICGAIRHKLIPTPQNLVTSTPLTTTFESFFGLHPLSQVLDRTNPLTQIVHGRKL 393

Query: 301 SYLGPGGLTGRTASFRIRDIHPSHYGRICPIDTSEGINVGLIGSLAIHARIGHWGSLETP 360
           SYLGPGGLTGRTASFRIRDIHPSHYGRICPIDTSEGINVGLIGSLAIHARIGHWGSLETP
Sbjct: 394 SYLGPGGLTGRTASFRIRDIHPSHYGRICPIDTSEGINVGLIGSLAIHARIGHWGSLETP 453

Query: 361 FYEISERSKKVRMLYLSPSRDEYYMVATGNSLALNPGIQEEQIVPARYHQ 411
           FYEISERSKKVRMLYLSPSRDEYYMVATGNSLALNPGIQEEQIVPARY Q
Sbjct: 454 FYEISERSKKVRMLYLSPSRDEYYMVATGNSLALNPGIQEEQIVPARYRQ 503

[Close]

BLAST of CmoCh02G004880 vs. TrEMBL
Match: A0A0S2IFM4_9ROSI (DNA-directed RNA polymerase subunit beta OS=Cucurbita foetidissima GN=rpoB PE=3 SV=1)

HSP 1 Score: 817.0 bits (2109), Expect = 1.1e-233
Identity = 405/410 (98.78%), Postives = 406/410 (99.02%), Query Frame = 1


Query: 1   MQEQTIFIGNIPLMNSLETSIVNGLYRIVISQILQRPDIYYQSELDHNGISVYTGTIISD 60
           MQEQTIFIGNIPLMNSL TSIVNGLYRIVISQILQ P IYY+SELDHNGISVYTGTIISD
Sbjct: 94  MQEQTIFIGNIPLMNSLGTSIVNGLYRIVISQILQSPGIYYRSELDHNGISVYTGTIISD 153

Query: 61  WGGRLELEIDRKARIWARVSRKQKISILVLSSAMGSNLREILENVCYPEIFLSFLNDKEK 120
           WGGRLELEIDRKARIWARVSRKQKISILVLSSAMGSNLREILENVCYPEIFLSFLNDKEK
Sbjct: 154 WGGRLELEIDRKARIWARVSRKQKISILVLSSAMGSNLREILENVCYPEIFLSFLNDKEK 213

Query: 121 KKIGSKENAILEFYQQFSCVGGDPVFSESLCKELQKKFFQQRCELGRIGRRNLNQRLNLD 180
           KKIGSKENAILEFYQQFSCVGGDPVFSESLCKELQKKFFQQRCELGRIGRRNLNQRLNLD
Sbjct: 214 KKIGSKENAILEFYQQFSCVGGDPVFSESLCKELQKKFFQQRCELGRIGRRNLNQRLNLD 273

Query: 181 IPENNTFLLPRDILAAADHLIGLKFGMGTLDDMNHLKNKRIRSVADLLQDQFGLALVRLE 240
           IPENNTFLLPRDILAAADHLIGLKFGMGTLDDMNHLKNKRIRSVADLLQDQFGLALVRLE
Sbjct: 274 IPENNTFLLPRDILAAADHLIGLKFGMGTLDDMNHLKNKRIRSVADLLQDQFGLALVRLE 333

Query: 241 NMVRGTICGAIRHKLIPTPQNLVTSTPLTTTFESFFGLHPLSQVLDRTNPLTQIVHGRKL 300
           NMVRGTICGAIRHKLIPTPQNLVTSTPLTTTFESFFGLHPLSQVLDRTNPLTQIVHGRKL
Sbjct: 334 NMVRGTICGAIRHKLIPTPQNLVTSTPLTTTFESFFGLHPLSQVLDRTNPLTQIVHGRKL 393

Query: 301 SYLGPGGLTGRTASFRIRDIHPSHYGRICPIDTSEGINVGLIGSLAIHARIGHWGSLETP 360
           SYLGPGGLTGRTASFRIRDIHPSHYGRICPIDTSEGINVGLIGSLAIHARIGHWGSLETP
Sbjct: 394 SYLGPGGLTGRTASFRIRDIHPSHYGRICPIDTSEGINVGLIGSLAIHARIGHWGSLETP 453

Query: 361 FYEISERSKKVRMLYLSPSRDEYYMVATGNSLALNPGIQEEQIVPARYHQ 411
           FYEISERSKKVRMLYLSPSRDEYYMVATGNSLALNPGIQEEQIVPARY Q
Sbjct: 454 FYEISERSKKVRMLYLSPSRDEYYMVATGNSLALNPGIQEEQIVPARYRQ 503

[Close]

BLAST of CmoCh02G004880 vs. TAIR10
Match: ATCG00190.1 (ATCG00190.1 RNA polymerase subunit beta)

HSP 1 Score: 756.9 bits (1953), Expect = 6.6e-219
Identity = 371/412 (90.05%), Postives = 392/412 (95.15%), Query Frame = 1


Query: 1   MQEQTIFIGNIPLMNSLETSIVNGLYRIVISQILQRPDIYYQSELDHNGISVYTGTIISD 60
           MQEQ IFIGNIPLMNSL TSIVNG+YRIVI+QILQ P IYYQSELDHNGISVYTGTIISD
Sbjct: 94  MQEQRIFIGNIPLMNSLGTSIVNGIYRIVINQILQSPGIYYQSELDHNGISVYTGTIISD 153

Query: 61  WGGRLELEIDRKARIWARVSRKQKISILVLSSAMGSNLREILENVCYPEIFLSFLNDKEK 120
           WGGRLELEID+KARIWARVSRKQKISILVLSSAMG NLREILENVCYPEIFLSFL DKEK
Sbjct: 154 WGGRLELEIDKKARIWARVSRKQKISILVLSSAMGLNLREILENVCYPEIFLSFLTDKEK 213

Query: 121 KKIGSKENAILEFYQQFSCVGGDPVFSESLCKELQKKFFQQRCELGRIGRRNLNQRLNLD 180
           KKIGSKENAILEFYQQFSCVGGDP+FSESLCKELQKKFF QRCELGRIGRRN+N RLNL+
Sbjct: 214 KKIGSKENAILEFYQQFSCVGGDPIFSESLCKELQKKFFHQRCELGRIGRRNINWRLNLN 273

Query: 181 IPENNTFLLPRDILAAADHLIGLKFGMGTLDDMNHLKNKRIRSVADLLQDQFGLALVRLE 240
           IP+NN FLLPRD+LAAADHLIG+KFGMGTLDDMNHLKNKRIRSVADLLQDQ GLAL RLE
Sbjct: 274 IPQNNIFLLPRDVLAAADHLIGMKFGMGTLDDMNHLKNKRIRSVADLLQDQLGLALARLE 333

Query: 241 NMVRGTICGAIRHKLIPTPQNLVTSTPLTTTFESFFGLHPLSQVLDRTNPLTQIVHGRKL 300
           N+V+GTI GAIRHKLIPTPQNLVTSTPLTTT+ESFFGLHPLSQVLDRTNPLTQIVHGRKL
Sbjct: 334 NVVKGTISGAIRHKLIPTPQNLVTSTPLTTTYESFFGLHPLSQVLDRTNPLTQIVHGRKL 393

Query: 301 SYLGPGGLTGRTASFRIRDIHPSHYGRICPIDTSEGINVGLIGSLAIHARIGHWGSLETP 360
           SYLGPGGLTGRTA+FRIRDIHPSHYGRICPIDTSEGINVGLIGSL+IHARIG WGSLE+P
Sbjct: 394 SYLGPGGLTGRTANFRIRDIHPSHYGRICPIDTSEGINVGLIGSLSIHARIGDWGSLESP 453

Query: 361 FYEISERSKK--VRMLYLSPSRDEYYMVATGNSLALNPGIQEEQIVPARYHQ 411
           FYE+ E+SKK  +RML+LSPS+DEYYM+A GNSLALN GIQEEQ VPARY Q
Sbjct: 454 FYELFEKSKKARIRMLFLSPSQDEYYMIAAGNSLALNRGIQEEQAVPARYRQ 505

[Close]

BLAST of CmoCh02G004880 vs. NCBI nr
Match: gi|952954810|gb|ALO22167.1| (RpoB (plastid) [Cucurbita foetidissima])

HSP 1 Score: 817.0 bits (2109), Expect = 1.5e-233
Identity = 405/410 (98.78%), Postives = 406/410 (99.02%), Query Frame = 1


Query: 1   MQEQTIFIGNIPLMNSLETSIVNGLYRIVISQILQRPDIYYQSELDHNGISVYTGTIISD 60
           MQEQTIFIGNIPLMNSL TSIVNGLYRIVISQILQ P IYY+SELDHNGISVYTGTIISD
Sbjct: 94  MQEQTIFIGNIPLMNSLGTSIVNGLYRIVISQILQSPGIYYRSELDHNGISVYTGTIISD 153

Query: 61  WGGRLELEIDRKARIWARVSRKQKISILVLSSAMGSNLREILENVCYPEIFLSFLNDKEK 120
           WGGRLELEIDRKARIWARVSRKQKISILVLSSAMGSNLREILENVCYPEIFLSFLNDKEK
Sbjct: 154 WGGRLELEIDRKARIWARVSRKQKISILVLSSAMGSNLREILENVCYPEIFLSFLNDKEK 213

Query: 121 KKIGSKENAILEFYQQFSCVGGDPVFSESLCKELQKKFFQQRCELGRIGRRNLNQRLNLD 180
           KKIGSKENAILEFYQQFSCVGGDPVFSESLCKELQKKFFQQRCELGRIGRRNLNQRLNLD
Sbjct: 214 KKIGSKENAILEFYQQFSCVGGDPVFSESLCKELQKKFFQQRCELGRIGRRNLNQRLNLD 273

Query: 181 IPENNTFLLPRDILAAADHLIGLKFGMGTLDDMNHLKNKRIRSVADLLQDQFGLALVRLE 240
           IPENNTFLLPRDILAAADHLIGLKFGMGTLDDMNHLKNKRIRSVADLLQDQFGLALVRLE
Sbjct: 274 IPENNTFLLPRDILAAADHLIGLKFGMGTLDDMNHLKNKRIRSVADLLQDQFGLALVRLE 333

Query: 241 NMVRGTICGAIRHKLIPTPQNLVTSTPLTTTFESFFGLHPLSQVLDRTNPLTQIVHGRKL 300
           NMVRGTICGAIRHKLIPTPQNLVTSTPLTTTFESFFGLHPLSQVLDRTNPLTQIVHGRKL
Sbjct: 334 NMVRGTICGAIRHKLIPTPQNLVTSTPLTTTFESFFGLHPLSQVLDRTNPLTQIVHGRKL 393

Query: 301 SYLGPGGLTGRTASFRIRDIHPSHYGRICPIDTSEGINVGLIGSLAIHARIGHWGSLETP 360
           SYLGPGGLTGRTASFRIRDIHPSHYGRICPIDTSEGINVGLIGSLAIHARIGHWGSLETP
Sbjct: 394 SYLGPGGLTGRTASFRIRDIHPSHYGRICPIDTSEGINVGLIGSLAIHARIGHWGSLETP 453

Query: 361 FYEISERSKKVRMLYLSPSRDEYYMVATGNSLALNPGIQEEQIVPARYHQ 411
           FYEISERSKKVRMLYLSPSRDEYYMVATGNSLALNPGIQEEQIVPARY Q
Sbjct: 454 FYEISERSKKVRMLYLSPSRDEYYMVATGNSLALNPGIQEEQIVPARYRQ 503

[Close]

BLAST of CmoCh02G004880 vs. NCBI nr
Match: gi|595646413|gb|AHM89856.1| (RNA polymerase beta subunit (chloroplast) [Lagenaria siceraria])

HSP 1 Score: 817.0 bits (2109), Expect = 1.5e-233
Identity = 405/410 (98.78%), Postives = 406/410 (99.02%), Query Frame = 1


Query: 1   MQEQTIFIGNIPLMNSLETSIVNGLYRIVISQILQRPDIYYQSELDHNGISVYTGTIISD 60
           MQEQTIFIGNIPLMNSL TSIVNGLYRIVISQILQ P IYY+SELDHNGISVYTGTIISD
Sbjct: 94  MQEQTIFIGNIPLMNSLGTSIVNGLYRIVISQILQSPGIYYRSELDHNGISVYTGTIISD 153

Query: 61  WGGRLELEIDRKARIWARVSRKQKISILVLSSAMGSNLREILENVCYPEIFLSFLNDKEK 120
           WGGRLELEIDRKARIWARVSRKQKISILVLSSAMGSNLREILENVCYPEIFLSFLNDKEK
Sbjct: 154 WGGRLELEIDRKARIWARVSRKQKISILVLSSAMGSNLREILENVCYPEIFLSFLNDKEK 213

Query: 121 KKIGSKENAILEFYQQFSCVGGDPVFSESLCKELQKKFFQQRCELGRIGRRNLNQRLNLD 180
           KKIGSKENAILEFYQQFSCVGGDPVFSESLCKELQKKFFQQRCELGRIGRRNLNQRLNLD
Sbjct: 214 KKIGSKENAILEFYQQFSCVGGDPVFSESLCKELQKKFFQQRCELGRIGRRNLNQRLNLD 273

Query: 181 IPENNTFLLPRDILAAADHLIGLKFGMGTLDDMNHLKNKRIRSVADLLQDQFGLALVRLE 240
           IPENNTFLLPRDILAAADHLIGLKFGMGTLDDMNHLKNKRIRSVADLLQDQFGLALVRLE
Sbjct: 274 IPENNTFLLPRDILAAADHLIGLKFGMGTLDDMNHLKNKRIRSVADLLQDQFGLALVRLE 333

Query: 241 NMVRGTICGAIRHKLIPTPQNLVTSTPLTTTFESFFGLHPLSQVLDRTNPLTQIVHGRKL 300
           NMVRGTICGAIRHKLIPTPQNLVTSTPLTTTFESFFGLHPLSQVLDRTNPLTQIVHGRKL
Sbjct: 334 NMVRGTICGAIRHKLIPTPQNLVTSTPLTTTFESFFGLHPLSQVLDRTNPLTQIVHGRKL 393

Query: 301 SYLGPGGLTGRTASFRIRDIHPSHYGRICPIDTSEGINVGLIGSLAIHARIGHWGSLETP 360
           SYLGPGGLTGRTASFRIRDIHPSHYGRICPIDTSEGINVGLIGSLAIHARIGHWGSLETP
Sbjct: 394 SYLGPGGLTGRTASFRIRDIHPSHYGRICPIDTSEGINVGLIGSLAIHARIGHWGSLETP 453

Query: 361 FYEISERSKKVRMLYLSPSRDEYYMVATGNSLALNPGIQEEQIVPARYHQ 411
           FYEISERSKKVRMLYLSPSRDEYYMVATGNSLALNPGIQEEQIVPARY Q
Sbjct: 454 FYEISERSKKVRMLYLSPSRDEYYMVATGNSLALNPGIQEEQIVPARYRQ 503

[Close]

BLAST of CmoCh02G004880 vs. NCBI nr
Match: gi|952954367|gb|ALO21731.1| (RpoB (plastid) [Cucurbita argyrosperma])

HSP 1 Score: 817.0 bits (2109), Expect = 1.5e-233
Identity = 405/410 (98.78%), Postives = 406/410 (99.02%), Query Frame = 1


Query: 1   MQEQTIFIGNIPLMNSLETSIVNGLYRIVISQILQRPDIYYQSELDHNGISVYTGTIISD 60
           MQEQTIFIGNIPLMNSL TSIVNGLYRIVISQILQ P IYY+SELDHNGISVYTGTIISD
Sbjct: 94  MQEQTIFIGNIPLMNSLGTSIVNGLYRIVISQILQSPGIYYRSELDHNGISVYTGTIISD 153

Query: 61  WGGRLELEIDRKARIWARVSRKQKISILVLSSAMGSNLREILENVCYPEIFLSFLNDKEK 120
           WGGRLELEIDRKARIWARVSRKQKISILVLSSAMGSNLREILENVCYPEIFLSFLNDKEK
Sbjct: 154 WGGRLELEIDRKARIWARVSRKQKISILVLSSAMGSNLREILENVCYPEIFLSFLNDKEK 213

Query: 121 KKIGSKENAILEFYQQFSCVGGDPVFSESLCKELQKKFFQQRCELGRIGRRNLNQRLNLD 180
           KKIGSKENAILEFYQQFSCVGGDPVFSESLCKELQKKFFQQRCELGRIGRRNLNQRLNLD
Sbjct: 214 KKIGSKENAILEFYQQFSCVGGDPVFSESLCKELQKKFFQQRCELGRIGRRNLNQRLNLD 273

Query: 181 IPENNTFLLPRDILAAADHLIGLKFGMGTLDDMNHLKNKRIRSVADLLQDQFGLALVRLE 240
           IPENNTFLLPRDILAAADHLIGLKFGMGTLDDMNHLKNKRIRSVADLLQDQFGLALVRLE
Sbjct: 274 IPENNTFLLPRDILAAADHLIGLKFGMGTLDDMNHLKNKRIRSVADLLQDQFGLALVRLE 333

Query: 241 NMVRGTICGAIRHKLIPTPQNLVTSTPLTTTFESFFGLHPLSQVLDRTNPLTQIVHGRKL 300
           NMVRGTICGAIRHKLIPTPQNLVTSTPLTTTFESFFGLHPLSQVLDRTNPLTQIVHGRKL
Sbjct: 334 NMVRGTICGAIRHKLIPTPQNLVTSTPLTTTFESFFGLHPLSQVLDRTNPLTQIVHGRKL 393

Query: 301 SYLGPGGLTGRTASFRIRDIHPSHYGRICPIDTSEGINVGLIGSLAIHARIGHWGSLETP 360
           SYLGPGGLTGRTASFRIRDIHPSHYGRICPIDTSEGINVGLIGSLAIHARIGHWGSLETP
Sbjct: 394 SYLGPGGLTGRTASFRIRDIHPSHYGRICPIDTSEGINVGLIGSLAIHARIGHWGSLETP 453

Query: 361 FYEISERSKKVRMLYLSPSRDEYYMVATGNSLALNPGIQEEQIVPARYHQ 411
           FYEISERSKKVRMLYLSPSRDEYYMVATGNSLALNPGIQEEQIVPARY Q
Sbjct: 454 FYEISERSKKVRMLYLSPSRDEYYMVATGNSLALNPGIQEEQIVPARYRQ 503

[Close]

BLAST of CmoCh02G004880 vs. NCBI nr
Match: gi|595646173|gb|AHM89620.1| (RNA polymerase beta subunit (chloroplast) [Lagenaria siceraria])

HSP 1 Score: 817.0 bits (2109), Expect = 1.5e-233
Identity = 405/410 (98.78%), Postives = 406/410 (99.02%), Query Frame = 1


Query: 1   MQEQTIFIGNIPLMNSLETSIVNGLYRIVISQILQRPDIYYQSELDHNGISVYTGTIISD 60
           MQEQTIFIGNIPLMNSL TSIVNGLYRIVISQILQ P IYY+SELDHNGISVYTGTIISD
Sbjct: 94  MQEQTIFIGNIPLMNSLGTSIVNGLYRIVISQILQSPGIYYRSELDHNGISVYTGTIISD 153

Query: 61  WGGRLELEIDRKARIWARVSRKQKISILVLSSAMGSNLREILENVCYPEIFLSFLNDKEK 120
           WGGRLELEIDRKARIWARVSRKQKISILVLSSAMGSNLREILENVCYPEIFLSFLNDKEK
Sbjct: 154 WGGRLELEIDRKARIWARVSRKQKISILVLSSAMGSNLREILENVCYPEIFLSFLNDKEK 213

Query: 121 KKIGSKENAILEFYQQFSCVGGDPVFSESLCKELQKKFFQQRCELGRIGRRNLNQRLNLD 180
           KKIGSKENAILEFYQQFSCVGGDPVFSESLCKELQKKFFQQRCELGRIGRRNLNQRLNLD
Sbjct: 214 KKIGSKENAILEFYQQFSCVGGDPVFSESLCKELQKKFFQQRCELGRIGRRNLNQRLNLD 273

Query: 181 IPENNTFLLPRDILAAADHLIGLKFGMGTLDDMNHLKNKRIRSVADLLQDQFGLALVRLE 240
           IPENNTFLLPRDILAAADHLIGLKFGMGTLDDMNHLKNKRIRSVADLLQDQFGLALVRLE
Sbjct: 274 IPENNTFLLPRDILAAADHLIGLKFGMGTLDDMNHLKNKRIRSVADLLQDQFGLALVRLE 333

Query: 241 NMVRGTICGAIRHKLIPTPQNLVTSTPLTTTFESFFGLHPLSQVLDRTNPLTQIVHGRKL 300
           NMVRGTICGAIRHKLIPTPQNLVTSTPLTTTFESFFGLHPLSQVLDRTNPLTQIVHGRKL
Sbjct: 334 NMVRGTICGAIRHKLIPTPQNLVTSTPLTTTFESFFGLHPLSQVLDRTNPLTQIVHGRKL 393

Query: 301 SYLGPGGLTGRTASFRIRDIHPSHYGRICPIDTSEGINVGLIGSLAIHARIGHWGSLETP 360
           SYLGPGGLTGRTASFRIRDIHPSHYGRICPIDTSEGINVGLIGSLAIHARIGHWGSLETP
Sbjct: 394 SYLGPGGLTGRTASFRIRDIHPSHYGRICPIDTSEGINVGLIGSLAIHARIGHWGSLETP 453

Query: 361 FYEISERSKKVRMLYLSPSRDEYYMVATGNSLALNPGIQEEQIVPARYHQ 411
           FYEISERSKKVRMLYLSPSRDEYYMVATGNSLALNPGIQEEQIVPARY Q
Sbjct: 454 FYEISERSKKVRMLYLSPSRDEYYMVATGNSLALNPGIQEEQIVPARYRQ 503

[Close]

BLAST of CmoCh02G004880 vs. NCBI nr
Match: gi|595645811|gb|AHM89264.1| (RNA polymerase beta subunit (chloroplast) [Lagenaria siceraria])

HSP 1 Score: 817.0 bits (2109), Expect = 1.5e-233
Identity = 405/410 (98.78%), Postives = 406/410 (99.02%), Query Frame = 1


Query: 1   MQEQTIFIGNIPLMNSLETSIVNGLYRIVISQILQRPDIYYQSELDHNGISVYTGTIISD 60
           MQEQTIFIGNIPLMNSL TSIVNGLYRIVISQILQ P IYY+SELDHNGISVYTGTIISD
Sbjct: 94  MQEQTIFIGNIPLMNSLGTSIVNGLYRIVISQILQSPGIYYRSELDHNGISVYTGTIISD 153

Query: 61  WGGRLELEIDRKARIWARVSRKQKISILVLSSAMGSNLREILENVCYPEIFLSFLNDKEK 120
           WGGRLELEIDRKARIWARVSRKQKISILVLSSAMGSNLREILENVCYPEIFLSFLNDKEK
Sbjct: 154 WGGRLELEIDRKARIWARVSRKQKISILVLSSAMGSNLREILENVCYPEIFLSFLNDKEK 213

Query: 121 KKIGSKENAILEFYQQFSCVGGDPVFSESLCKELQKKFFQQRCELGRIGRRNLNQRLNLD 180
           KKIGSKENAILEFYQQFSCVGGDPVFSESLCKELQKKFFQQRCELGRIGRRNLNQRLNLD
Sbjct: 214 KKIGSKENAILEFYQQFSCVGGDPVFSESLCKELQKKFFQQRCELGRIGRRNLNQRLNLD 273

Query: 181 IPENNTFLLPRDILAAADHLIGLKFGMGTLDDMNHLKNKRIRSVADLLQDQFGLALVRLE 240
           IPENNTFLLPRDILAAADHLIGLKFGMGTLDDMNHLKNKRIRSVADLLQDQFGLALVRLE
Sbjct: 274 IPENNTFLLPRDILAAADHLIGLKFGMGTLDDMNHLKNKRIRSVADLLQDQFGLALVRLE 333

Query: 241 NMVRGTICGAIRHKLIPTPQNLVTSTPLTTTFESFFGLHPLSQVLDRTNPLTQIVHGRKL 300
           NMVRGTICGAIRHKLIPTPQNLVTSTPLTTTFESFFGLHPLSQVLDRTNPLTQIVHGRKL
Sbjct: 334 NMVRGTICGAIRHKLIPTPQNLVTSTPLTTTFESFFGLHPLSQVLDRTNPLTQIVHGRKL 393

Query: 301 SYLGPGGLTGRTASFRIRDIHPSHYGRICPIDTSEGINVGLIGSLAIHARIGHWGSLETP 360
           SYLGPGGLTGRTASFRIRDIHPSHYGRICPIDTSEGINVGLIGSLAIHARIGHWGSLETP
Sbjct: 394 SYLGPGGLTGRTASFRIRDIHPSHYGRICPIDTSEGINVGLIGSLAIHARIGHWGSLETP 453

Query: 361 FYEISERSKKVRMLYLSPSRDEYYMVATGNSLALNPGIQEEQIVPARYHQ 411
           FYEISERSKKVRMLYLSPSRDEYYMVATGNSLALNPGIQEEQIVPARY Q
Sbjct: 454 FYEISERSKKVRMLYLSPSRDEYYMVATGNSLALNPGIQEEQIVPARYRQ 503

The following BLAST results are available for this feature:

BLAST of CmoCh02G004880 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RPOB_CUCSA	8.1e-235	98.54	DNA-directed RNA polymerase subunit beta OS=Cucumis sativus GN=rpoB PE=3 SV=2	[more]
RPOB_VITVI	7.4e-228	94.15	DNA-directed RNA polymerase subunit beta OS=Vitis vinifera GN=rpoB PE=3 SV=1	[more]
RPOB_GOSBA	4.0e-226	93.90	DNA-directed RNA polymerase subunit beta OS=Gossypium barbadense GN=rpoB PE=3 SV...	[more]
RPOB_GOSHI	4.0e-226	93.90	DNA-directed RNA polymerase subunit beta OS=Gossypium hirsutum GN=rpoB PE=3 SV=1	[more]
RPOB_BUXMI	1.2e-225	93.66	DNA-directed RNA polymerase subunit beta OS=Buxus microphylla GN=rpoB PE=3 SV=1	[more]

BLAST of CmoCh02G004880 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0S2IG32_CUCPE	1.1e-233	98.78	DNA-directed RNA polymerase subunit beta OS=Cucurbita pepo subsp. ovifera GN=rpo...	[more]
A0A0S2IGB8_CUCPE	1.1e-233	98.78	DNA-directed RNA polymerase subunit beta OS=Cucurbita pepo var. ozarkana GN=rpoB...	[more]
A0A0S2IEV8_9ROSI	1.1e-233	98.78	DNA-directed RNA polymerase subunit beta OS=Cucurbita digitata GN=rpoB PE=3 SV=1	[more]
A0A0S2IEF4_9ROSI	1.1e-233	98.78	DNA-directed RNA polymerase subunit beta OS=Cucurbita cordata GN=rpoB PE=3 SV=1	[more]
A0A0S2IFM4_9ROSI	1.1e-233	98.78	DNA-directed RNA polymerase subunit beta OS=Cucurbita foetidissima GN=rpoB PE=3 ...	[more]

BLAST of CmoCh02G004880 vs. TAIR10


Match Name	E-value	Identity	Description
ATCG00190.1	6.6e-219	90.05	ATCG00190.1 RNA polymerase subunit beta	[more]

BLAST of CmoCh02G004880 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|952954810\|gb\|ALO22167.1\|	1.5e-233	98.78	RpoB (plastid) [Cucurbita foetidissima]	[more]
gi\|595646413\|gb\|AHM89856.1\|	1.5e-233	98.78	RNA polymerase beta subunit (chloroplast) [Lagenaria siceraria]	[more]
gi\|952954367\|gb\|ALO21731.1\|	1.5e-233	98.78	RpoB (plastid) [Cucurbita argyrosperma]	[more]
gi\|595646173\|gb\|AHM89620.1\|	1.5e-233	98.78	RNA polymerase beta subunit (chloroplast) [Lagenaria siceraria]	[more]
gi\|595645811\|gb\|AHM89264.1\|	1.5e-233	98.78	RNA polymerase beta subunit (chloroplast) [Lagenaria siceraria]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR007642	RNA_pol_Rpb2_2
IPR007645	RNA_pol_Rpb2_3
IPR015712	DNA-dir_RNA_pol_su2

Vocabulary: **Biological Process**
Term	Definition
GO:0006351	transcription, DNA-templated

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding
GO:0003899	DNA-directed RNA polymerase activity
GO:0032549	ribonucleoside binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006144	purine nucleobase metabolic process
biological_process	GO:0006206	pyrimidine nucleobase metabolic process
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005730	nucleolus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003899	DNA-directed RNA polymerase activity
molecular_function	GO:0032549	ribonucleoside binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh02G004880.1	CmoCh02G004880.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007642	RNA polymerase Rpb2, domain 2	GENE3D	G3DSA:3.90.1110.10		coord: 37..212 score: 1.4
IPR007642	RNA polymerase Rpb2, domain 2	PFAM	PF04561	RNA_pol_Rpb2_2	coord: 36..222 score: 5.4
IPR007645	RNA polymerase Rpb2, domain 3	PFAM	PF04565	RNA_pol_Rpb2_3	coord: 283..351 score: 6.7
IPR015712	DNA-directed RNA polymerase, subunit 2	PANTHER	PTHR20856	DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2	coord: 1..408 score: 8.1E
None	No IPR available	GENE3D	G3DSA:3.90.1100.10		coord: 1..35 score: 7.1E-68coord: 213..374 score: 7.1
None	No IPR available	PANTHER	PTHR20856:SF20	DNA-DIRECTED RNA POLYMERASE SUBUNIT BETA	coord: 1..408 score: 8.1E
None	No IPR available	unknown	SSF64484	beta and beta-prime subunits of DNA dependent RNA-polymerase	coord: 2..410 score: 3.66

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh02G004880	Cucurbita moschata (Rifu)	cmocmoB404
CmoCh02G004880	Cucurbita maxima (Rimu)	cmacmoB554
CmoCh02G004880	Cucurbita maxima (Rimu)	cmacmoB619
CmoCh02G004880	Wild cucumber (PI 183967)	cmocpiB584
CmoCh02G004880	Cucumber (Chinese Long) v2	cmocuB579
CmoCh02G004880	Melon (DHL92) v3.5.1	cmomeB524
CmoCh02G004880	Watermelon (Charleston Gray)	cmowcgB528
CmoCh02G004880	Watermelon (97103) v1	cmowmB588
CmoCh02G004880	Cucurbita pepo (Zucchini)	cmocpeB575
CmoCh02G004880	Cucurbita pepo (Zucchini)	cmocpeB595
CmoCh02G004880	Bottle gourd (USVL1VR-Ls)	cmolsiB533
CmoCh02G004880	Cucumber (Gy14) v2	cgybcmoB222
CmoCh02G004880	Melon (DHL92) v3.6.1	cmomedB605
CmoCh02G004880	Silver-seed gourd	carcmoB1278
CmoCh02G004880	Silver-seed gourd	carcmoB1415
CmoCh02G004880	Cucumber (Chinese Long) v3	cmocucB0689
CmoCh02G004880	Watermelon (97103) v2	cmowmbB591
CmoCh02G004880	Wax gourd	cmowgoB0749