CmoCh02G004660 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh02G004660
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionRNA-binding protein
LocationCmo_Chr02 : 2504072 .. 2506969 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAGGAGGGAAGTTCTTGGTGAGAAATGGCAAAATGGAGAGCCACTTGGGCGAAATTCCCACCTCGAAATCCTCAGTCAAACTCAAATCCAACGGCCCTTTGTCACAAAATCCTACCCTCCTTTCAATCCACCCCCAGATGCATATATTTGGGCGCGAAATCTGCGTCGATTTGCAGATTTCAGTTACTAAACTTCAGGCTAAATCTTACGCGCGCGCGCACACACACACACTGAGATTTCCATAACCCTTATGCGTTCCAAACTCTTCTTCGGATTAGCGCAAGTGGAAGAGGGGAATCGGAGAAGATATGGCGGAATCGAATCCGGAAAAGAAGGTGAATCCGAACCCTGAAATGGAGGTCGTCAAACAAGCTGTTAATGGCGATGCTGGTGTTGGTAGTAGTACCAGCAATGGTGATCTTTCCTTCAAATTCAATGCCCAAGCGCCTGAGTTCTTCCCTAGATCGCAAACTCAGATGCCTGTTACCGGCTATTTTCATCCTTATTTCCATTTTCTTGGTGGGGCTCCTGCTACTTCCGATTGGTTCTTTATTGGCGATCAAGAACCCACCTATTTGATCCCTAATCCCACCATTCCCCTCCCTAATTTCTCTAAGAATCCCCGTTCTGATGATATTCACCAAAAACTCGTCAAACAGGTAACCTTGTTTCATTCTGTTCTTGATTCCTTTTTGTCTTGATTTCTTTTATATTCATCGTTTGATTCCACAATCCTGCTTCCTGTTCTGTGTTCATCTGAATGATCAATCACCAAACTCTGATTATATGTATGCTTCTTGCTTTTTGGTAAATATATGATAGTCCTTTAGAACTCTGTATTTGGATGATCAATGTGCCATGCTCGTAACTAGTTCATGTTATTATTTTGTCTGTCACATCAAGATTATCTATAATAATGTTCTTAAGGTACACTCCTTTTCCATTAGTTTTCTCCTTGGATTCCTTCTTAACGTGTTTGATCTTTCTTTCTTTATGCTTTGAGCTTAAAGGGTTTGATATGCATAAGTTCTTCCCTATGACTATAATTCCATATATGTTGTTCATAGTTGGAACATCAGTTCAGCATCTTATGAATGATTTCAATTTTACAGGTAGAATATCAGTTCAGCGACATGAGTCTTCTTGCAAATGAATCTCTTGCAAAAAGCATTAGCAAAGATCCTGATGGTTATGGTATAATCTTTGGAAGTCTATCACCTGGATGTGTTAATTCGAATTTTCGATATATTTTTAACTGAATTATTATTTGTCTTTCTTTCGTTTCCCTTTATGAAGTTCCAATTTCTGTTATTTCGTCCACCAAAAAAGTGAAGTCCCTCTCAACTAACAACAATTTGATAGTTCAAGCTCTCCGCTCCTCTTCAAAGCTTGTAAGTTCTTAAGTTAAGCACTCAATTTTCCACTCTTTCTGGAAAAATAAGAACTCTTGATTTAATGTGATTCATATCTGATCTTCTGAAGGTTGTTAGTGCTGATGGGAAGAAAGTTAAGCGTAAGCATCCCTTTACGGACAAGGACAAAGAGGAATTGCTGGTAAGATCAACCATGGTACAAATGATGCAGAACATTTATCTTTAGCTGAGTATGGTGTAATGTTTTTGTTCATTGATTTGCAGTCCCGCACGGTCGTTGTGGAGAATTTGCCCGACAATCACTCACACCACAACCTCGAGAAGATATTTAGCGTCATTGGGAGGTAGTTTCATTAACATCATCACTCAGTCTTATTCCTTGTTCTATTAGATGTTTAAACTGTCTTCACTGAGCTTCATTCATTAATGATATCTTACCAGTGTGAAAACTGTCCGAATCTGCCATCCCCCAGAGTCAAATCCGTGCTGCTCTAAAGGTGAATTGTTTATCAGTAACAAGGTATTGTGAATCATCCTTTACTATAATGTATATATCCAAGGCACTTCTCCTTAAAATCCTTTTCTCATTGTTACTTCATTTGTTTGAAGCTTCATGCACTTGTGGAATACGAGATCGCAGAGTTGGCTGAAAGAGCGGTATGCATCTATTGTACGCTATAGGTGATCGAGTTACTTGTATTCAATCTTTTTATTGTCTTTTCCACGTTTTTTTGTGCCCGCTAGGCTGAGAAGTTAAATGATGAGAGAAACTGGAGGAAAGGGCTCCGCGTAAGGCTATTGCTCAGACGCTCGGTAAGTGTAATAAGACGATGTGCCTGCATTTTCATTATTTACATGCTCCTGCTTAGTTCAACTCTAATTATTATTTCTGGATAGCCGAAATCGGTTCTGAAGACTCGAAAGTCCGATTTTGATTGTATTCTGGATGAAGATGATTCACCATCTACTGTGTCCACTGAACAAGAGTCCTCTCTGCCAAATATCACTGAACTGATAAACGATTGCAGTGTACGTATTTCGTTTCTAAAACTTTTTCGTCCTTGATTAAATGATTTGTAATTCTCAAATGACATGAAGTATCTGGTTTACTAGTCCGAGGAGAACTCTACATCAGCTAAGAAGGGTTGGGGACGAGGCCGTGGGAAGGGTCGTGGACGAATTCATAGCCATCTCGATCGTAGCTGTAGCTTGCCAGTGGCAGCAATGCAATCAAGTAGTCAGGTTGTTTGTGAGGCATCTTCCAAACTCACTACGAAGAGTCCGAGAATGCCTGATGGGACGAAAGGGTTCACCATGGGACGAGGCAAGCCATTGAGCTCTAAACCTGTATTTTGAATGAATAGAGAAATGTAGGGAAACCTTTCTTTGGTTGTTGTTAATTAGGGTGGAAAAAACTGACTATTTTGCTGCTACCTATGCTTGTGTGTTTTTTTGGTAATAATGGATATGTTTGATAGGATTTTGGTTTATATAATGTGGCGCTGCCCATCATTCTATTTTTCTG

mRNA sequence

AAGGAGGGAAGTTCTTGGTGAGAAATGGCAAAATGGAGAGCCACTTGGGCGAAATTCCCACCTCGAAATCCTCAGTCAAACTCAAATCCAACGGCCCTTTGTCACAAAATCCTACCCTCCTTTCAATCCACCCCCAGATGCATATATTTGGGCGCGAAATCTGCGTCGATTTGCAGATTTCAGTTACTAAACTTCAGGCTAAATCTTACGCGCGCGCGCACACACACACACTGAGATTTCCATAACCCTTATGCGTTCCAAACTCTTCTTCGGATTAGCGCAAGTGGAAGAGGGGAATCGGAGAAGATATGGCGGAATCGAATCCGGAAAAGAAGGTGAATCCGAACCCTGAAATGGAGGTCGTCAAACAAGCTGTTAATGGCGATGCTGGTGTTGGTAGTAGTACCAGCAATGGTGATCTTTCCTTCAAATTCAATGCCCAAGCGCCTGAGTTCTTCCCTAGATCGCAAACTCAGATGCCTGTTACCGGCTATTTTCATCCTTATTTCCATTTTCTTGGTGGGGCTCCTGCTACTTCCGATTGGTTCTTTATTGGCGATCAAGAACCCACCTATTTGATCCCTAATCCCACCATTCCCCTCCCTAATTTCTCTAAGAATCCCCGTTCTGATGATATTCACCAAAAACTCGTCAAACAGGTAGAATATCAGTTCAGCGACATGAGTCTTCTTGCAAATGAATCTCTTGCAAAAAGCATTAGCAAAGATCCTGATGGTTATGTTCCAATTTCTGTTATTTCGTCCACCAAAAAAGTGAAGTCCCTCTCAACTAACAACAATTTGATAGTTCAAGCTCTCCGCTCCTCTTCAAAGCTTGTTGTTAGTGCTGATGGGAAGAAAGTTAAGCGTAAGCATCCCTTTACGGACAAGGACAAAGAGGAATTGCTGTCCCGCACGGTCGTTGTGGAGAATTTGCCCGACAATCACTCACACCACAACCTCGAGAAGATATTTAGCGTCATTGGGAGTGTGAAAACTGTCCGAATCTGCCATCCCCCAGAGTCAAATCCGTGCTGCTCTAAAGGTGAATTGTTTATCAGTAACAAGCTTCATGCACTTGTGGAATACGAGATCGCAGAGTTGGCTGAAAGAGCGGCTGAGAAGTTAAATGATGAGAGAAACTGGAGGAAAGGGCTCCGCGTAAGGCTATTGCTCAGACGCTCGCCGAAATCGGTTCTGAAGACTCGAAAGTCCGATTTTGATTGTATTCTGGATGAAGATGATTCACCATCTACTGTGTCCACTGAACAAGAGTCCTCTCTGCCAAATATCACTGAACTGATAAACGATTGCAGTTCCGAGGAGAACTCTACATCAGCTAAGAAGGGTTGGGGACGAGGCCGTGGGAAGGGTCGTGGACGAATTCATAGCCATCTCGATCGTAGCTGTAGCTTGCCAGTGGCAGCAATGCAATCAAGTAGTCAGGTTGTTTGTGAGGCATCTTCCAAACTCACTACGAAGAGTCCGAGAATGCCTGATGGGACGAAAGGGTTCACCATGGGACGAGGCAAGCCATTGAGCTCTAAACCTGTATTTTGAATGAATAGAGAAATGTAGGGAAACCTTTCTTTGGTTGTTGTTAATTAGGGTGGAAAAAACTGACTATTTTGCTGCTACCTATGCTTGTGTGTTTTTTTGGTAATAATGGATATGTTTGATAGGATTTTGGTTTATATAATGTGGCGCTGCCCATCATTCTATTTTTCTG

Coding sequence (CDS)

ATGGCGGAATCGAATCCGGAAAAGAAGGTGAATCCGAACCCTGAAATGGAGGTCGTCAAACAAGCTGTTAATGGCGATGCTGGTGTTGGTAGTAGTACCAGCAATGGTGATCTTTCCTTCAAATTCAATGCCCAAGCGCCTGAGTTCTTCCCTAGATCGCAAACTCAGATGCCTGTTACCGGCTATTTTCATCCTTATTTCCATTTTCTTGGTGGGGCTCCTGCTACTTCCGATTGGTTCTTTATTGGCGATCAAGAACCCACCTATTTGATCCCTAATCCCACCATTCCCCTCCCTAATTTCTCTAAGAATCCCCGTTCTGATGATATTCACCAAAAACTCGTCAAACAGGTAGAATATCAGTTCAGCGACATGAGTCTTCTTGCAAATGAATCTCTTGCAAAAAGCATTAGCAAAGATCCTGATGGTTATGTTCCAATTTCTGTTATTTCGTCCACCAAAAAAGTGAAGTCCCTCTCAACTAACAACAATTTGATAGTTCAAGCTCTCCGCTCCTCTTCAAAGCTTGTTGTTAGTGCTGATGGGAAGAAAGTTAAGCGTAAGCATCCCTTTACGGACAAGGACAAAGAGGAATTGCTGTCCCGCACGGTCGTTGTGGAGAATTTGCCCGACAATCACTCACACCACAACCTCGAGAAGATATTTAGCGTCATTGGGAGTGTGAAAACTGTCCGAATCTGCCATCCCCCAGAGTCAAATCCGTGCTGCTCTAAAGGTGAATTGTTTATCAGTAACAAGCTTCATGCACTTGTGGAATACGAGATCGCAGAGTTGGCTGAAAGAGCGGCTGAGAAGTTAAATGATGAGAGAAACTGGAGGAAAGGGCTCCGCGTAAGGCTATTGCTCAGACGCTCGCCGAAATCGGTTCTGAAGACTCGAAAGTCCGATTTTGATTGTATTCTGGATGAAGATGATTCACCATCTACTGTGTCCACTGAACAAGAGTCCTCTCTGCCAAATATCACTGAACTGATAAACGATTGCAGTTCCGAGGAGAACTCTACATCAGCTAAGAAGGGTTGGGGACGAGGCCGTGGGAAGGGTCGTGGACGAATTCATAGCCATCTCGATCGTAGCTGTAGCTTGCCAGTGGCAGCAATGCAATCAAGTAGTCAGGTTGTTTGTGAGGCATCTTCCAAACTCACTACGAAGAGTCCGAGAATGCCTGATGGGACGAAAGGGTTCACCATGGGACGAGGCAAGCCATTGAGCTCTAAACCTGTATTTTGA
Homology
[Close]
BLAST of CmoCh02G004660 vs. Swiss-Prot
Match: LRP6C_ARATH (La-related protein 6C OS=Arabidopsis thaliana GN=LARP6C PE=3 SV=1)

HSP 1 Score: 382.9 bits (982), Expect = 4.5e-105
Identity = 227/438 (51.83%), Postives = 281/438 (64.16%), Query Frame = 1 

Query: 26  DAGVGSSTSNGDLSFKFNAQAPEFFPRSQTQMP------VTGYFHPYFHFLGGA------ 85
           D G GSS +    +FKFNAQAPEF PRS T  P      V+GYF+P FH+ GG       
Sbjct: 20  DGGGGSSGAQAT-AFKFNAQAPEFVPRSHTTAPAPQVSPVSGYFYPCFHYNGGCIGGCGG 79

Query: 86  -----------PATSDWFFIGDQEPT------------YLIPNPTIPLP------NFSKN 145
                        +SDW ++G  +PT            + I NP +  P      + SKN
Sbjct: 80  GVCGGGGTGVGTQSSDWIYVGGGDPTAQHQHVHDPAAAFYISNPAVQFPASQNSSSSSKN 139

Query: 146 PRSDDIHQKLVKQVEYQFSDMSLLANESLAKSISKDPDGYVPISVISSTKKVKSLSTNNN 205
             SDD+  K+VKQVEYQF+DMSLLANES++K ISKDP+GYVP+S I+STKK+K+L++N++
Sbjct: 140 LLSDDLRLKIVKQVEYQFTDMSLLANESISKHISKDPEGYVPVSYIASTKKIKALTSNHH 199

Query: 206 LIVQALRSSSKLVVSADGKKVKRKHPFTDKDKEELLSRTVVVENLPDNHSHHNLEKIFSV 265
           L+  ALRSSSKLVVS DGKKVKR   FTD+D+EEL  RTVV ENLPD+HS+ NLEKIF V
Sbjct: 200 LVSLALRSSSKLVVSEDGKKVKRTSQFTDRDREELQGRTVVAENLPDDHSYQNLEKIFGV 259

Query: 266 IGSVKTVRICHPPESNPCCSKGELFISNKLHALVEYEIAELAERAAEKLNDERNWRKGLR 325
           +G+VK +RICHPPESN    KG+  +SNK+HAL+EY+   +A++A EKLNDERNWRKGLR
Sbjct: 260 VGNVKAIRICHPPESNSSRPKGDFLMSNKIHALIEYDNTVIADKAVEKLNDERNWRKGLR 319

Query: 326 VRLLLRRSPKSVLKTRKSDFDCILDEDDSPSTVSTEQESSLPNITELINDCSSEENSTSA 385
           VRLLLR SPKSVLK R+ +FD IL +D+ PS  S E    L ++TE   D   ++N+   
Sbjct: 320 VRLLLRCSPKSVLKNRR-NFDGILIDDELPSYESGEDSPRL-HLTESQLDNDGDDNNVGG 379

Query: 386 KKGWGRGRGKGRGR-------------IHSHLDRSCSLPVAAMQSSSQVVCEASSKLTTK 410
              WG+GRGKGRGR                 L  S  +P      SS      S K  TK
Sbjct: 380 L--WGKGRGKGRGRSPRSYAVGGGGRSFGIGLGVSLGIPSLGSHESS------SPKTATK 439

[Close]
BLAST of CmoCh02G004660 vs. Swiss-Prot
Match: LRP6B_ARATH (La-related protein 6B OS=Arabidopsis thaliana GN=LARP6B PE=1 SV=2)

HSP 1 Score: 218.4 bits (555), Expect = 1.5e-55
Identity = 140/361 (38.78%), Postives = 197/361 (54.57%), Query Frame = 1 

Query: 102 SKNPRSDDIHQKLVKQVEYQFSDMSLLANESLAKSISKDPDGYVPISVISSTKKVKSLST 161
           SK    +D  QK+V QVEY FSD++L   + L + I KDP+GYVPI V++S KK+K++  
Sbjct: 185 SKTGLPEDSIQKIVNQVEYYFSDLNLATTDHLMRFICKDPEGYVPIHVVASFKKIKAVIN 244

Query: 162 NNNLIVQALRSSSKLVVSADGKKVKRKHPFTDKDKEELLSRTVVVENLPDNHSHHNLEKI 221
           NN+ +   L++S+KL VS DGKKV+R  P T+   EEL SR +V ENLP++H + NL KI
Sbjct: 245 NNSQLAAVLQNSAKLFVSEDGKKVRRISPITESAIEELQSRIIVAENLPEDHCYQNLMKI 304

Query: 222 FSVIGSVKTVRICH--------PPESNPCCSKGELFISNKLHALVEYEIAELAERAAEKL 281
           FS +GSVK +R C         PP +           SNK+HA VEYEI ELAERA  +L
Sbjct: 305 FSTVGSVKNIRTCQPQNNGSGAPPAARSAAKSDGTLFSNKVHAFVEYEIVELAERAVTEL 364

Query: 282 NDERNWRKGLRVRLLLR---RSPKSVLKTRKSDFDCILDEDDSPSTVSTEQESSLPNITE 341
           ++  NWR GL+VRL+L+   + PK      +   D  ++ ++  +T S +Q      I +
Sbjct: 365 SEAGNWRSGLKVRLMLKHQTKEPKQGQGRGRKGHDADVEHEEDDATTSEQQP-----IEK 424

Query: 342 LINDCSSE----------------ENSTSAKKGWGRGRGKGRGRIHSHLDRSCSLPVAAM 401
             +DCS E                E +   +KG  RGRGKGRGR   H +++ +   +  
Sbjct: 425 QSDDCSGEWDTHMQEQPIGEDQGNEKAAGQRKGRNRGRGKGRGRGQPHQNQNQNNNHSHN 484

Query: 402 QSSS-------------QVVCEASS------------KLTTKSPRMPDGTKGFTMGRGKP 411
           Q+ +             QV  + S+            K     PRMPDGT+GF+MGRGKP
Sbjct: 485 QNHNHNGRGNHHHHHHHQVGTQPSNNPMNNMEQPGMGKQQPPGPRMPDGTRGFSMGRGKP 540

[Close]
BLAST of CmoCh02G004660 vs. Swiss-Prot
Match: LRP6A_ARATH (La-related protein 6A OS=Arabidopsis thaliana GN=LARP6A PE=2 SV=1)

HSP 1 Score: 176.8 bits (447), Expect = 4.9e-43
Identity = 118/313 (37.70%), Postives = 172/313 (54.95%), Query Frame = 1 

Query: 108 DDIHQKLVKQVEYQFSDMSLLANESLAKSISKDPDGYVPISVISSTKKVKSLSTNNNLIV 167
           D+++QK+++QVEY FSD +L  ++ L  ++ ++  G+VPIS I++  K+K L+ ++ LIV
Sbjct: 101 DELNQKIIRQVEYYFSDENLPTDKFLLNAMKRNKKGFVPISTIATFHKMKKLTRDHALIV 160

Query: 168 QALRSSSKLVVSADGKKVKRKHPFTDKDKEELLSRTVVVENLPDNHSHHNLEKIFSVIGS 227
            AL+ SS LVVSAD KKVKR  P  +    ++   TV+VENLP++HS+ N+ +IF   GS
Sbjct: 161 SALKESSFLVVSADEKKVKRLSPLPEIRDPKIF--TVLVENLPEDHSNENIREIFGKAGS 220

Query: 228 VKTVRICHP--PESNPCCSKGELFISNKLHALVEYEIAELAERAAEKLNDERNWRKGLRV 287
           +K+V IC P   E +    K E FI  +LHA VEYE  E AE+AA  LN+E++WR GLRV
Sbjct: 221 IKSVSICDPNAVEESEKGGKKENFIRTRLHAFVEYETVEAAEKAAATLNNEQDWRNGLRV 280

Query: 288 RLL--------LRRSPKSVLKTRKSDFDCILDEDDSPSTVSTEQESSLPNITELINDCSS 347
           +LL         RR  +  +   K     + D+        T +  +   +    N    
Sbjct: 281 KLLEQAAGKFAQRRPARREVDKEKDTTGRVHDQTGGEKNKKTREHQN-HRLHHSDNPADD 340

Query: 348 EENSTSAKKGWGRGRGKGRGRIHSHLDRSCSLPVAAMQSSSQVVCEASSKLTTKSPRMPD 407
           +  +    K   +GR  G+GR  +H   +      A  SS               PRMPD
Sbjct: 341 DGGNHQKDKNGNKGRVVGQGRRQNHQGGNGIGHGTASSSSHPNYHPVEVSKRPPGPRMPD 400

Query: 408 GTKGFTMGRGKPL 411
           GT+GFTMGRGK +
Sbjct: 401 GTRGFTMGRGKAI 410

[Close]
BLAST of CmoCh02G004660 vs. Swiss-Prot
Match: LARP7_MOUSE (La-related protein 7 OS=Mus musculus GN=Larp7 PE=1 SV=2)

HSP 1 Score: 93.6 bits (231), Expect = 5.5e-18
Identity = 61/173 (35.26%), Postives = 95/173 (54.91%), Query Frame = 1 

Query: 103 KNPRSDDIHQKLVKQVEYQFSDMSLLANESLAKSISKDPDGYVPISVISSTKKVKSLSTN 162
           K  R   +   + KQV++ F D +L  ++ L + I K  DGYV IS++ S  K+K L+T+
Sbjct: 21  KRSRVKQVLADIAKQVDFWFGDANLHKDKFLREQIEKSRDGYVDISLLVSFNKMKKLTTD 80

Query: 163 NNLIVQALRSSSKLVVSADGKKVKRKHPFTDKDKEELLSRTVVVENLPDNHSHHNLEKIF 222
             LI +AL+SSS + +  +G +++RK P  ++ K+E   RTV VE LP N +H  +E++F
Sbjct: 81  GKLIARALKSSSVVELDLEGTRIRRKKPLGERPKDE-EERTVYVELLPKNVTHSWIERVF 140

Query: 223 SVIGSVKTVRICHPPESNPCCSKGELFISNKLHALVEYEIAELAERAAEKLND 276
              G+V  + I H   +             K  A VE+E  E A +A E LN+
Sbjct: 141 GKCGNVVYISIPHYKSTG----------DPKGFAFVEFETKEQAAKAIEFLNN 182

[Close]
BLAST of CmoCh02G004660 vs. Swiss-Prot
Match: LARP7_RAT (La-related protein 7 OS=Rattus norvegicus GN=Larp7 PE=1 SV=2)

HSP 1 Score: 93.2 bits (230), Expect = 7.2e-18
Identity = 61/173 (35.26%), Postives = 94/173 (54.34%), Query Frame = 1 

Query: 103 KNPRSDDIHQKLVKQVEYQFSDMSLLANESLAKSISKDPDGYVPISVISSTKKVKSLSTN 162
           K  R   +   + KQV++ F D +L  +  L + I K  DGYV IS++ S  K+K L+T+
Sbjct: 22  KRSRVKQVLADIAKQVDFWFGDANLHKDRFLREQIEKSRDGYVDISLLVSFNKMKKLTTD 81

Query: 163 NNLIVQALRSSSKLVVSADGKKVKRKHPFTDKDKEELLSRTVVVENLPDNHSHHNLEKIF 222
             LI +AL+SSS + +  +G +++RK P  ++ K+E   RTV VE LP N +H  +E++F
Sbjct: 82  GKLIARALKSSSVVELDLEGTRIRRKKPLGERPKDE-EERTVYVELLPKNVTHSWIERVF 141

Query: 223 SVIGSVKTVRICHPPESNPCCSKGELFISNKLHALVEYEIAELAERAAEKLND 276
              G+V  + I H   +             K  A VE+E  E A +A E LN+
Sbjct: 142 GKCGNVVYISIPHYKSTG----------DPKGFAFVEFETKEQAAKAIEFLNN 183

[Close]
BLAST of CmoCh02G004660 vs. TrEMBL
Match: A0A0A0LIU3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G235610 PE=4 SV=1)

HSP 1 Score: 627.9 bits (1618), Expect = 9.0e-177
Identity = 329/441 (74.60%), Postives = 371/441 (84.13%), Query Frame = 1 

Query: 1   MAESNPEKKVNPN-PEMEVVKQAVNGDAGVGSSTSN-GDLSFKFNAQAPEFFPRSQTQMP 60
           MA+ NPE+K + N  EME  ++A+      GSS S+  +L+F+FNAQAPEFFPR+QTQMP
Sbjct: 1   MAQLNPEEKFSENHSEMEANQEAIINSESDGSSNSSLANLAFRFNAQAPEFFPRTQTQMP 60

Query: 61  VTGYFHPYFHFLGGAPATSDWFFIGDQEPTYLIPNPTIPLPNFSKNPRSDDIHQKLVKQV 120
           VTGYFHPYFHFLGG PA+SDWFFIGDQEP YLIPNP I LPNFSK+ RS++I QK+VKQV
Sbjct: 61  VTGYFHPYFHFLGGGPASSDWFFIGDQEPAYLIPNPNIQLPNFSKHARSEEIQQKIVKQV 120

Query: 121 EYQFSDMSLLANESLAKSISKDPDGYVPISVISSTKKVKSLSTNNNLIVQALRSSSKL-- 180
           EYQ SDMSLLANE+LAK ISKDPDGYVPIS++SSTKKVKSLSTNNN IVQALRSSS+L  
Sbjct: 121 EYQLSDMSLLANETLAKHISKDPDGYVPISILSSTKKVKSLSTNNNFIVQALRSSSRLVS 180

Query: 181 ---------------------VVSADGKKVKRKHPFTDKDKEELLSRTVVVENLPDNHSH 240
                                VVS+DGK+V+RK PFTDKDKEELL+RTVV ENLP+NHSH
Sbjct: 181 SVVEHSVLYSLLIIDQYLVPKVVSSDGKRVRRKVPFTDKDKEELLARTVVAENLPENHSH 240

Query: 241 HNLEKIFSVIGSVKTVRICHPPESNPCCSKGELFISNKLHALVEYEIAELAERAAEKLND 300
           HNLEKIFSV+GSVKT+RICHPPESNPCCSKGELF+SNKLHALVE+E AELAERA E+LND
Sbjct: 241 HNLEKIFSVVGSVKTIRICHPPESNPCCSKGELFVSNKLHALVEFETAELAERAIEQLND 300

Query: 301 ERNWRKGLRVRLLLRRSPKSVLKTRKSDFDCILDEDDSPSTVSTEQESSLPNITELINDC 360
           ERNWRKGLRVR L+RRSPKSVLK RKS+FD +LDEDDSPS VS E ES L NI +L  DC
Sbjct: 301 ERNWRKGLRVRPLVRRSPKSVLKNRKSEFDSVLDEDDSPSPVSVE-ESPLQNINDLNVDC 360

Query: 361 SSEENSTSAKKGWGRGRGKGRGRIHSHLDRSCSLPV-AAMQSSSQVVCEASSKLTTKSPR 416
           +SEENSTS KK WGRGRGKGRGRIH +LDRS SLPV +++Q+S QV+ EASSKLTTKSPR
Sbjct: 361 NSEENSTSLKKSWGRGRGKGRGRIHGNLDRSYSLPVTSSLQTSGQVLSEASSKLTTKSPR 420

[Close]
BLAST of CmoCh02G004660 vs. TrEMBL
Match: A0A061DZS6_THECC (RNA-binding protein, putative isoform 1 OS=Theobroma cacao GN=TCM_007000 PE=4 SV=1)

HSP 1 Score: 503.1 bits (1294), Expect = 3.4e-139
Identity = 267/423 (63.12%), Postives = 330/423 (78.01%), Query Frame = 1 

Query: 1   MAESNPEKKVNPNPEMEV-VKQAV--------NGDAGVGSSTSNGDLSFKFNAQAPEFFP 60
           MA++ PE+K    P+ +  +K A+        N  +  GSSTSN  ++FKFNAQAPEF P
Sbjct: 1   MAQAQPEEKPKEEPQEKFQMKDAMAAKRTTSCNSGSSNGSSTSNS-VTFKFNAQAPEFVP 60

Query: 61  RSQTQMPVTGYFHPYFHFLGGAPATSDWFFIGDQEPT-YLIPNPTIPLPNFS-KNPRSDD 120
           RS TQ+P++GY++P FH+LGGA   SDWFF+GDQEP  YLI NP +P+PN S KN  +DD
Sbjct: 61  RSHTQVPLSGYYYPCFHYLGGAGG-SDWFFVGDQEPADYLISNPNLPIPNCSSKNLLTDD 120

Query: 121 IHQKLVKQVEYQFSDMSLLANESLAKSISKDPDGYVPISVISSTKKVKSLSTNNNLIVQA 180
           + QK+++QVEYQF+DMSLLANESL+K ISKDP+GYV IS I+S KK+KSL TNN L+ QA
Sbjct: 121 LRQKIIRQVEYQFNDMSLLANESLSKQISKDPEGYVSISFIASMKKIKSLITNNQLLAQA 180

Query: 181 LRSSSKLVVSADGKKVKRKHPFTDKDKEELLSRTVVVENLPDNHSHHNLEKIFSVIGSVK 240
           LRSSSKLVVS DGKKVKRKHPFT+K +EE+ SRTVV+ENLP++HSH NL+KIF+V+GSV+
Sbjct: 181 LRSSSKLVVSDDGKKVKRKHPFTEKKREEVASRTVVIENLPEDHSHQNLDKIFNVVGSVQ 240

Query: 241 TVRICHPPESNPCCSKGELFISNKLHALVEYEIAELAERAAEKLNDERNWRKGLRVRLLL 300
            +RICHP ESN   SK + F+ NKLHALVEYE  E+AE+A +KLNDERNWRKGLRVRLLL
Sbjct: 241 NIRICHPQESNSSRSKSDFFMCNKLHALVEYESTEIAEKAVDKLNDERNWRKGLRVRLLL 300

Query: 301 RRSPKSVLKTRKSDFDCILDEDDSPSTVSTEQESSLPNITELINDCSSEENSTSAKKGWG 360
           R SPKSVLK+RKS+FD ILDED+SP      ++SSL NI E I + + ++N+  +KKGWG
Sbjct: 301 RLSPKSVLKSRKSEFDGILDEDESP-VAEYSEDSSLSNIAEAIENNADQDNAVGSKKGWG 360

Query: 361 RGRGKGRGRIHSHLDRSCSLPVAAMQSSSQVVCEASSKLTTKSPRMPDGTKGFTMGRGKP 413
           +GRGKGRGR+ +H  R   L  A  Q  S V CEAS K T+K PRMPDGT+GFTMGRGKP
Sbjct: 361 KGRGKGRGRVQNHSGR--GLIAACPQPGSAVQCEASVKQTSKGPRMPDGTRGFTMGRGKP 418

[Close]
BLAST of CmoCh02G004660 vs. TrEMBL
Match: A0A061E1L4_THECC (RNA-binding protein, putative isoform 2 OS=Theobroma cacao GN=TCM_007000 PE=4 SV=1)

HSP 1 Score: 498.4 bits (1282), Expect = 8.3e-138
Identity = 267/424 (62.97%), Postives = 330/424 (77.83%), Query Frame = 1 

Query: 1   MAESNPEKKVNPNPEMEV-VKQAV--------NGDAGVGSSTSNGDLSFKFNAQAPEFFP 60
           MA++ PE+K    P+ +  +K A+        N  +  GSSTSN  ++FKFNAQAPEF P
Sbjct: 1   MAQAQPEEKPKEEPQEKFQMKDAMAAKRTTSCNSGSSNGSSTSNS-VTFKFNAQAPEFVP 60

Query: 61  RSQTQMPVTGYFHPYFHFLGGAPATSDWFFIGDQEPT-YLIPNPTIPLPNFS-KNPRSDD 120
           RS TQ+P++GY++P FH+LGGA   SDWFF+GDQEP  YLI NP +P+PN S KN  +DD
Sbjct: 61  RSHTQVPLSGYYYPCFHYLGGAGG-SDWFFVGDQEPADYLISNPNLPIPNCSSKNLLTDD 120

Query: 121 IHQKLVKQVEYQFSDMSLLANESLAKSISKDPDGYVPISVISSTKKVKSLSTNNNLIVQA 180
           + QK+++QVEYQF+DMSLLANESL+K ISKDP+GYV IS I+S KK+KSL TNN L+ QA
Sbjct: 121 LRQKIIRQVEYQFNDMSLLANESLSKQISKDPEGYVSISFIASMKKIKSLITNNQLLAQA 180

Query: 181 LRSSSKLVVSADGKKVKRKHPFTDKDKEELLSRTVVVENLPDNHSHHNLEKIFSVIGSVK 240
           LRSSSKLVVS DGKKVKRKHPFT+K +EE+ SRTVV+ENLP++HSH NL+KIF+V+GSV+
Sbjct: 181 LRSSSKLVVSDDGKKVKRKHPFTEKKREEVASRTVVIENLPEDHSHQNLDKIFNVVGSVQ 240

Query: 241 TVRICHPPESNPCCSKGELFISN-KLHALVEYEIAELAERAAEKLNDERNWRKGLRVRLL 300
            +RICHP ESN   SK + F+ N KLHALVEYE  E+AE+A +KLNDERNWRKGLRVRLL
Sbjct: 241 NIRICHPQESNSSRSKSDFFMCNKKLHALVEYESTEIAEKAVDKLNDERNWRKGLRVRLL 300

Query: 301 LRRSPKSVLKTRKSDFDCILDEDDSPSTVSTEQESSLPNITELINDCSSEENSTSAKKGW 360
           LR SPKSVLK+RKS+FD ILDED+SP      ++SSL NI E I + + ++N+  +KKGW
Sbjct: 301 LRLSPKSVLKSRKSEFDGILDEDESP-VAEYSEDSSLSNIAEAIENNADQDNAVGSKKGW 360

Query: 361 GRGRGKGRGRIHSHLDRSCSLPVAAMQSSSQVVCEASSKLTTKSPRMPDGTKGFTMGRGK 413
           G+GRGKGRGR+ +H  R   L  A  Q  S V CEAS K T+K PRMPDGT+GFTMGRGK
Sbjct: 361 GKGRGKGRGRVQNHSGR--GLIAACPQPGSAVQCEASVKQTSKGPRMPDGTRGFTMGRGK 419

[Close]
BLAST of CmoCh02G004660 vs. TrEMBL
Match: M5VJI3_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa024894mg PE=4 SV=1)

HSP 1 Score: 486.1 bits (1250), Expect = 4.2e-134
Identity = 263/409 (64.30%), Postives = 312/409 (76.28%), Query Frame = 1 

Query: 6   PEKKVNPNPEMEVVKQAVNGDAGVGSSTSNGDLSFKFNAQAPEFFPRSQTQMPVTGYFHP 65
           P +K    PEMEV +  ++              SFKFNAQAPEF PRS TQMP++GYF+P
Sbjct: 7   PGEKTQDAPEMEVKENPISP-------------SFKFNAQAPEFVPRSHTQMPISGYFYP 66

Query: 66  YFHFLGGAPATSDWFFIGDQE-PTYLIPN-PTIPLPNFSKNPRSDDIHQKLVKQVEYQFS 125
            FHFLG + A+ DWF+IGDQE P YLI N P IPL N SKN   DD+ QK++KQVEYQFS
Sbjct: 67  CFHFLGES-ASPDWFYIGDQELPPYLISNNPNIPLANRSKNALPDDLQQKIIKQVEYQFS 126

Query: 126 DMSLLANESLAKSISKDPDGYVPISVISSTKKVKSLSTNNNLIVQALRSSSKLVVSADGK 185
           DMSLLANESL K ISKDP+GYVPISV++STKK+KSL +NN+++ QALRSSSKLVV+ DGK
Sbjct: 127 DMSLLANESLVKHISKDPEGYVPISVVASTKKMKSLISNNHMLAQALRSSSKLVVNEDGK 186

Query: 186 KVKRKHPFTDKDKEELLSRTVVVENLPDNHSHHNLEKIFSVIGSVKTVRICHPPESNPCC 245
           KV+RK+PFT+KDKEEL SRTVV ENLP++HSH NLEKIFSV+GSVKT+RICHP ESN   
Sbjct: 187 KVRRKYPFTEKDKEELQSRTVVAENLPEDHSHQNLEKIFSVVGSVKTIRICHPHESNSSR 246

Query: 246 SKGELFISNKLHALVEYEIAELAERAAEKLNDERNWRKGLRVRLLLRRSPKSVLKTRKSD 305
           SKG+  ISNKLHALVEYE  ++AERA +KL+DERNWRKGLRVRLLLRRSPKSVLK RKSD
Sbjct: 247 SKGDFIISNKLHALVEYETTDIAERAVDKLSDERNWRKGLRVRLLLRRSPKSVLKNRKSD 306

Query: 306 FDCILDEDDSPSTVSTEQESSLPNITELINDCSSEENSTSAKKGWGRGRGKGRGRIHSHL 365
           FD IL ED+ P      +E+S P+  EL+ D  +EEN  ++KKGW  GRGK RGR     
Sbjct: 307 FDGIL-EDEEPQ-YDCAEETSQPSNPELVTDSPNEENLAASKKGWAWGRGKARGRGQGQS 366

Query: 366 DRSCSLPVAAMQSSSQVVCEASSKLTTKSPRMPDGTKGFTMGRGKPLSS 413
            R    P  + QSS+ + CEA +K   K PRMPDGT+GFTMGRGKP+S+
Sbjct: 367 GRGLIAP--SPQSSNTIQCEAPAKQNAKGPRMPDGTRGFTMGRGKPVSA 397

[Close]
BLAST of CmoCh02G004660 vs. TrEMBL
Match: A0A0D2RSF5_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G240000 PE=4 SV=1)

HSP 1 Score: 476.9 bits (1226), Expect = 2.6e-131
Identity = 259/416 (62.26%), Postives = 317/416 (76.20%), Query Frame = 1 

Query: 1   MAESNPEKKVNPNP-EMEVVKQAVNGDAGVGSSTSNGD-LSFKFNAQAPEFFPRSQTQMP 60
           ++ + P    N N   M   KQ  +  +G G+   NG+ ++FKFNA APEF P+S TQMP
Sbjct: 20  ISSTKPTSSCNNNAISMAAAKQGTSCSSGNGNGNGNGNGVTFKFNAHAPEFVPKSHTQMP 79

Query: 61  VTGYFHPYFHFLGGAPAT-SDWFFIGDQEPT-YLIPNPTIPLPNFS-KNPRSDDIHQKLV 120
           ++GY++P FH+LGGA A  SDWFF+G+QEP+ YL  NP I +PN S KN  +DD+ QK++
Sbjct: 80  ISGYYYPCFHYLGGAAAAASDWFFLGEQEPSAYLSSNPNISIPNCSSKNVLTDDLRQKII 139

Query: 121 KQVEYQFSDMSLLANESLAKSISKDPDGYVPISVISSTKKVKSLSTNNNLIVQALRSSSK 180
           KQVEYQFSDMSLLANESL+K  SKDP+GYVPIS I+STKK+KSL TN+ L+ QALRSS K
Sbjct: 140 KQVEYQFSDMSLLANESLSKQTSKDPEGYVPISFIASTKKIKSLITNHQLLAQALRSSLK 199

Query: 181 LVVSADGKKVKRKHPFTDKDKEELLSRTVVVENLPDNHSHHNLEKIFSVIGSVKTVRICH 240
           LVVS DGKKV+RKHPFT+K++E++ SRTVVVENLP++HSH NL+KIF+V+GSVK +RICH
Sbjct: 200 LVVSDDGKKVRRKHPFTEKEREQVQSRTVVVENLPEDHSHQNLDKIFNVVGSVKNIRICH 259

Query: 241 PPESNPCCSKGELFISNKLHALVEYEIAELAERAAEKLNDERNWRKGLRVRLLLRRSPKS 300
           P ESN   SK +  +SNKLHALVEYE  ++AE+A EKLNDERNWRKGLRVRLLLR SPKS
Sbjct: 260 PQESNSSRSKIDFVMSNKLHALVEYESTKVAEKAVEKLNDERNWRKGLRVRLLLRLSPKS 319

Query: 301 VLKTRKSDFDCILDEDDSPSTVSTEQESSLPNITELINDCSSEENSTSAKKGWGRGRGKG 360
           VLKTRKS+FD ILD+DDSP    +E  SS PN  E   +   E+N+  +KKGW +GRGK 
Sbjct: 320 VLKTRKSEFDGILDDDDSPRGEHSEG-SSPPNNAESFENIV-EDNTVGSKKGWSKGRGKV 379

Query: 361 RGRIHSHLDRSCSLPVAAMQSSSQVVCEASSKLTTKSPRMPDGTKGFTMGRGKPLS 412
           RG   +H  R   L  A+ Q S+ V CEAS K  TK PRMPDGT+GFTMGRGKPLS
Sbjct: 380 RGCAQNHSGRG--LLAASPQPSNAVQCEASVKQITKGPRMPDGTRGFTMGRGKPLS 431

[Close]
BLAST of CmoCh02G004660 vs. TAIR10
Match: AT3G19090.1 (AT3G19090.1 RNA-binding protein)

HSP 1 Score: 382.9 bits (982), Expect = 2.6e-106
Identity = 227/438 (51.83%), Postives = 281/438 (64.16%), Query Frame = 1 

Query: 26  DAGVGSSTSNGDLSFKFNAQAPEFFPRSQTQMP------VTGYFHPYFHFLGGA------ 85
           D G GSS +    +FKFNAQAPEF PRS T  P      V+GYF+P FH+ GG       
Sbjct: 20  DGGGGSSGAQAT-AFKFNAQAPEFVPRSHTTAPAPQVSPVSGYFYPCFHYNGGCIGGCGG 79

Query: 86  -----------PATSDWFFIGDQEPT------------YLIPNPTIPLP------NFSKN 145
                        +SDW ++G  +PT            + I NP +  P      + SKN
Sbjct: 80  GVCGGGGTGVGTQSSDWIYVGGGDPTAQHQHVHDPAAAFYISNPAVQFPASQNSSSSSKN 139

Query: 146 PRSDDIHQKLVKQVEYQFSDMSLLANESLAKSISKDPDGYVPISVISSTKKVKSLSTNNN 205
             SDD+  K+VKQVEYQF+DMSLLANES++K ISKDP+GYVP+S I+STKK+K+L++N++
Sbjct: 140 LLSDDLRLKIVKQVEYQFTDMSLLANESISKHISKDPEGYVPVSYIASTKKIKALTSNHH 199

Query: 206 LIVQALRSSSKLVVSADGKKVKRKHPFTDKDKEELLSRTVVVENLPDNHSHHNLEKIFSV 265
           L+  ALRSSSKLVVS DGKKVKR   FTD+D+EEL  RTVV ENLPD+HS+ NLEKIF V
Sbjct: 200 LVSLALRSSSKLVVSEDGKKVKRTSQFTDRDREELQGRTVVAENLPDDHSYQNLEKIFGV 259

Query: 266 IGSVKTVRICHPPESNPCCSKGELFISNKLHALVEYEIAELAERAAEKLNDERNWRKGLR 325
           +G+VK +RICHPPESN    KG+  +SNK+HAL+EY+   +A++A EKLNDERNWRKGLR
Sbjct: 260 VGNVKAIRICHPPESNSSRPKGDFLMSNKIHALIEYDNTVIADKAVEKLNDERNWRKGLR 319

Query: 326 VRLLLRRSPKSVLKTRKSDFDCILDEDDSPSTVSTEQESSLPNITELINDCSSEENSTSA 385
           VRLLLR SPKSVLK R+ +FD IL +D+ PS  S E    L ++TE   D   ++N+   
Sbjct: 320 VRLLLRCSPKSVLKNRR-NFDGILIDDELPSYESGEDSPRL-HLTESQLDNDGDDNNVGG 379

Query: 386 KKGWGRGRGKGRGR-------------IHSHLDRSCSLPVAAMQSSSQVVCEASSKLTTK 410
              WG+GRGKGRGR                 L  S  +P      SS      S K  TK
Sbjct: 380 L--WGKGRGKGRGRSPRSYAVGGGGRSFGIGLGVSLGIPSLGSHESS------SPKTATK 439

[Close]
BLAST of CmoCh02G004660 vs. TAIR10
Match: AT2G43970.1 (AT2G43970.1 RNA-binding protein)

HSP 1 Score: 218.4 bits (555), Expect = 8.3e-57
Identity = 140/361 (38.78%), Postives = 197/361 (54.57%), Query Frame = 1 

Query: 102 SKNPRSDDIHQKLVKQVEYQFSDMSLLANESLAKSISKDPDGYVPISVISSTKKVKSLST 161
           SK    +D  QK+V QVEY FSD++L   + L + I KDP+GYVPI V++S KK+K++  
Sbjct: 185 SKTGLPEDSIQKIVNQVEYYFSDLNLATTDHLMRFICKDPEGYVPIHVVASFKKIKAVIN 244

Query: 162 NNNLIVQALRSSSKLVVSADGKKVKRKHPFTDKDKEELLSRTVVVENLPDNHSHHNLEKI 221
           NN+ +   L++S+KL VS DGKKV+R  P T+   EEL SR +V ENLP++H + NL KI
Sbjct: 245 NNSQLAAVLQNSAKLFVSEDGKKVRRISPITESAIEELQSRIIVAENLPEDHCYQNLMKI 304

Query: 222 FSVIGSVKTVRICH--------PPESNPCCSKGELFISNKLHALVEYEIAELAERAAEKL 281
           FS +GSVK +R C         PP +           SNK+HA VEYEI ELAERA  +L
Sbjct: 305 FSTVGSVKNIRTCQPQNNGSGAPPAARSAAKSDGTLFSNKVHAFVEYEIVELAERAVTEL 364

Query: 282 NDERNWRKGLRVRLLLR---RSPKSVLKTRKSDFDCILDEDDSPSTVSTEQESSLPNITE 341
           ++  NWR GL+VRL+L+   + PK      +   D  ++ ++  +T S +Q      I +
Sbjct: 365 SEAGNWRSGLKVRLMLKHQTKEPKQGQGRGRKGHDADVEHEEDDATTSEQQP-----IEK 424

Query: 342 LINDCSSE----------------ENSTSAKKGWGRGRGKGRGRIHSHLDRSCSLPVAAM 401
             +DCS E                E +   +KG  RGRGKGRGR   H +++ +   +  
Sbjct: 425 QSDDCSGEWDTHMQEQPIGEDQGNEKAAGQRKGRNRGRGKGRGRGQPHQNQNQNNNHSHN 484

Query: 402 QSSS-------------QVVCEASS------------KLTTKSPRMPDGTKGFTMGRGKP 411
           Q+ +             QV  + S+            K     PRMPDGT+GF+MGRGKP
Sbjct: 485 QNHNHNGRGNHHHHHHHQVGTQPSNNPMNNMEQPGMGKQQPPGPRMPDGTRGFSMGRGKP 540

[Close]
BLAST of CmoCh02G004660 vs. TAIR10
Match: AT5G46250.1 (AT5G46250.1 RNA-binding protein)

HSP 1 Score: 176.8 bits (447), Expect = 2.8e-44
Identity = 118/313 (37.70%), Postives = 172/313 (54.95%), Query Frame = 1 

Query: 108 DDIHQKLVKQVEYQFSDMSLLANESLAKSISKDPDGYVPISVISSTKKVKSLSTNNNLIV 167
           D+++QK+++QVEY FSD +L  ++ L  ++ ++  G+VPIS I++  K+K L+ ++ LIV
Sbjct: 101 DELNQKIIRQVEYYFSDENLPTDKFLLNAMKRNKKGFVPISTIATFHKMKKLTRDHALIV 160

Query: 168 QALRSSSKLVVSADGKKVKRKHPFTDKDKEELLSRTVVVENLPDNHSHHNLEKIFSVIGS 227
            AL+ SS LVVSAD KKVKR  P  +    ++   TV+VENLP++HS+ N+ +IF   GS
Sbjct: 161 SALKESSFLVVSADEKKVKRLSPLPEIRDPKIF--TVLVENLPEDHSNENIREIFGKAGS 220

Query: 228 VKTVRICHP--PESNPCCSKGELFISNKLHALVEYEIAELAERAAEKLNDERNWRKGLRV 287
           +K+V IC P   E +    K E FI  +LHA VEYE  E AE+AA  LN+E++WR GLRV
Sbjct: 221 IKSVSICDPNAVEESEKGGKKENFIRTRLHAFVEYETVEAAEKAAATLNNEQDWRNGLRV 280

Query: 288 RLL--------LRRSPKSVLKTRKSDFDCILDEDDSPSTVSTEQESSLPNITELINDCSS 347
           +LL         RR  +  +   K     + D+        T +  +   +    N    
Sbjct: 281 KLLEQAAGKFAQRRPARREVDKEKDTTGRVHDQTGGEKNKKTREHQN-HRLHHSDNPADD 340

Query: 348 EENSTSAKKGWGRGRGKGRGRIHSHLDRSCSLPVAAMQSSSQVVCEASSKLTTKSPRMPD 407
           +  +    K   +GR  G+GR  +H   +      A  SS               PRMPD
Sbjct: 341 DGGNHQKDKNGNKGRVVGQGRRQNHQGGNGIGHGTASSSSHPNYHPVEVSKRPPGPRMPD 400

Query: 408 GTKGFTMGRGKPL 411
           GT+GFTMGRGK +
Sbjct: 401 GTRGFTMGRGKAI 410

[Close]
BLAST of CmoCh02G004660 vs. TAIR10
Match: AT4G32720.1 (AT4G32720.1 La protein 1)

HSP 1 Score: 55.1 bits (131), Expect = 1.2e-07
Identity = 40/141 (28.37%), Postives = 74/141 (52.48%), Query Frame = 1 

Query: 107 SDDIHQKLVKQVEYQFSDMSLLANESLAKSISKDPDGYVPISVISSTKKVKSL-----ST 166
           +++  + +++QVE+ FSD +L  ++ L K++++  DG V +++I S  K++       S 
Sbjct: 7   TEETAKTVLRQVEFYFSDSNLPIDDFLKKTVTESEDGLVSLALICSFSKMRGYLKLGDSK 66

Query: 167 NNNL-------IVQALRSSSKLVVSADGKKVKRKHPFTDKDK--EELLSRTVVVENLPDN 226
            +++       +   LR+SS L +S DGKKV R       +   E+L +RTV       +
Sbjct: 67  GDDIPEDTIKAVADTLRTSSALKISDDGKKVGRSTELLKLEDLIEQLNARTVAASPFSYD 126

Query: 227 HSHHNLEKIFSVIGSVKTVRI 234
               ++E  FS  G V +VR+
Sbjct: 127 VKREDVESFFSQYGKVNSVRM 147

[Close]
BLAST of CmoCh02G004660 vs. TAIR10
Match: AT4G35890.1 (AT4G35890.1 winged-helix DNA-binding transcription factor family protein)

HSP 1 Score: 49.3 bits (116), Expect = 6.7e-06
Identity = 29/83 (34.94%), Postives = 49/83 (59.04%), Query Frame = 1 

Query: 99  PNFSKNPRSDDIHQKLVKQVEYQFSDMSLLANESLAKSISKDPDGYVPISVISSTKKVKS 158
           P F  + +   +H KL KQ++Y FSD +L+ +  L   ++   +G+VP+ V++  KKV  
Sbjct: 358 PQFFYHYQDPPLHMKLHKQIQYYFSDENLITDIYLRGFMNN--EGFVPLRVVAGFKKVAE 417

Query: 159 LSTNNNLIVQALRSSSKLVVSAD 182
           L+ N   IV+AL++S  + V  D
Sbjct: 418 LTDNIQQIVEALQNSPHVEVQGD 438

[Close]
BLAST of CmoCh02G004660 vs. NCBI nr
Match: gi|659118627|ref|XP_008459218.1| (PREDICTED: la-related protein 6C [Cucumis melo])

HSP 1 Score: 646.4 bits (1666), Expect = 3.5e-182
Identity = 328/417 (78.66%), Postives = 374/417 (89.69%), Query Frame = 1 

Query: 1   MAESNPEKKVNPN-PEMEVVKQAV-NGDAGVGSSTSNGDLSFKFNAQAPEFFPRSQTQMP 60
           MA+ NPE+K + N  EMEV ++A+ N D+   S++S  +L+F+FNAQAPEFFPR+Q QMP
Sbjct: 1   MAQLNPEEKFSENHSEMEVNQEAITNSDSDGSSNSSLANLAFRFNAQAPEFFPRTQPQMP 60

Query: 61  VTGYFHPYFHFLGGAPATSDWFFIGDQEPTYLIPNPTIPLPNFSKNPRSDDIHQKLVKQV 120
           VTGYFHPYFHFLGG PA+SDWFFIGDQEP YLIPNP I LPNFSK+ RS++I QK+VKQV
Sbjct: 61  VTGYFHPYFHFLGGGPASSDWFFIGDQEPAYLIPNPNIQLPNFSKHARSEEIQQKIVKQV 120

Query: 121 EYQFSDMSLLANESLAKSISKDPDGYVPISVISSTKKVKSLSTNNNLIVQALRSSSKLVV 180
           EYQ SDMSLLANE+LAK ISKDPDGYVPIS++SSTKKVKSLSTNNN IVQALRSSS+LVV
Sbjct: 121 EYQLSDMSLLANETLAKHISKDPDGYVPISILSSTKKVKSLSTNNNFIVQALRSSSRLVV 180

Query: 181 SADGKKVKRKHPFTDKDKEELLSRTVVVENLPDNHSHHNLEKIFSVIGSVKTVRICHPPE 240
           S+DGK+V+RK PFTDKDKEELL+RTVV ENLP+NHSHHNLEKIFSV+GSVKT+RICHPPE
Sbjct: 181 SSDGKRVRRKVPFTDKDKEELLARTVVAENLPENHSHHNLEKIFSVVGSVKTIRICHPPE 240

Query: 241 SNPCCSKGELFISNKLHALVEYEIAELAERAAEKLNDERNWRKGLRVRLLLRRSPKSVLK 300
           SNPCCSKGELF+SNKLHALVE+E  +LAERA E+LNDERNWRKGLRVR L+RRSPKSVLK
Sbjct: 241 SNPCCSKGELFVSNKLHALVEFETVDLAERAIEQLNDERNWRKGLRVRPLVRRSPKSVLK 300

Query: 301 TRKSDFDCILDEDDSPSTVSTEQESSLPNITELINDCSSEENSTSAKKGWGRGRGKGRGR 360
            RKS+FD +LDEDDSPS+VS E E+ L NI +LI DC+ EENSTS+KK WGRGRGKGRGR
Sbjct: 301 NRKSEFDSVLDEDDSPSSVSVE-ETPLQNINDLIVDCNPEENSTSSKKSWGRGRGKGRGR 360

Query: 361 IHSHLDRSCSLPV-AAMQSSSQVVCEASSKLTTKSPRMPDGTKGFTMGRGKPLSSKP 415
           IH HLDRS SLPV +++Q+S QV+CEASSKLTTKSPRMPDGTKGFTMGRGKPLSSKP
Sbjct: 361 IHGHLDRSYSLPVTSSLQTSGQVLCEASSKLTTKSPRMPDGTKGFTMGRGKPLSSKP 416

[Close]
BLAST of CmoCh02G004660 vs. NCBI nr
Match: gi|778669150|ref|XP_004153773.2| (PREDICTED: la-related protein 6C [Cucumis sativus])

HSP 1 Score: 641.0 bits (1652), Expect = 1.5e-180
Identity = 329/418 (78.71%), Postives = 371/418 (88.76%), Query Frame = 1 

Query: 1   MAESNPEKKVNPN-PEMEVVKQAVNGDAGVGSSTSN-GDLSFKFNAQAPEFFPRSQTQMP 60
           MA+ NPE+K + N  EME  ++A+      GSS S+  +L+F+FNAQAPEFFPR+QTQMP
Sbjct: 1   MAQLNPEEKFSENHSEMEANQEAIINSESDGSSNSSLANLAFRFNAQAPEFFPRTQTQMP 60

Query: 61  VTGYFHPYFHFLGGAPATSDWFFIGDQEPTYLIPNPTIPLPNFSKNPRSDDIHQKLVKQV 120
           VTGYFHPYFHFLGG PA+SDWFFIGDQEP YLIPNP I LPNFSK+ RS++I QK+VKQV
Sbjct: 61  VTGYFHPYFHFLGGGPASSDWFFIGDQEPAYLIPNPNIQLPNFSKHARSEEIQQKIVKQV 120

Query: 121 EYQFSDMSLLANESLAKSISKDPDGYVPISVISSTKKVKSLSTNNNLIVQALRSSSKLVV 180
           EYQ SDMSLLANE+LAK ISKDPDGYVPIS++SSTKKVKSLSTNNN IVQALRSSS+LVV
Sbjct: 121 EYQLSDMSLLANETLAKHISKDPDGYVPISILSSTKKVKSLSTNNNFIVQALRSSSRLVV 180

Query: 181 SADGKKVKRKHPFTDKDKEELLSRTVVVENLPDNHSHHNLEKIFSVIGSVKTVRICHPPE 240
           S+DGK+V+RK PFTDKDKEELL+RTVV ENLP+NHSHHNLEKIFSV+GSVKT+RICHPPE
Sbjct: 181 SSDGKRVRRKVPFTDKDKEELLARTVVAENLPENHSHHNLEKIFSVVGSVKTIRICHPPE 240

Query: 241 SNPCCSKGELFISNKLHALVEYEIAELAERAAEKLNDERNWRKGLRVRLLLRRSPKSVLK 300
           SNPCCSKGELF+SNKLHALVE+E AELAERA E+LNDERNWRKGLRVR L+RRSPKSVLK
Sbjct: 241 SNPCCSKGELFVSNKLHALVEFETAELAERAIEQLNDERNWRKGLRVRPLVRRSPKSVLK 300

Query: 301 TRKSDFDCILDEDDSPSTVSTEQESSLPNITELINDCSSEENSTSAKKGWGRGRGKGRGR 360
            RKS+FD +LDEDDSPS VS E ES L NI +L  DC+SEENSTS KK WGRGRGKGRGR
Sbjct: 301 NRKSEFDSVLDEDDSPSPVSVE-ESPLQNINDLNVDCNSEENSTSLKKSWGRGRGKGRGR 360

Query: 361 IHSHLDRSCSLPV-AAMQSSSQVVCEASSKLTTKSPRMPDGTKGFTMGRGKPLSSKPV 416
           IH +LDRS SLPV +++Q+S QV+ EASSKLTTKSPRMPDGTKGFTMGRGKPLSSKP+
Sbjct: 361 IHGNLDRSYSLPVTSSLQTSGQVLSEASSKLTTKSPRMPDGTKGFTMGRGKPLSSKPL 417

[Close]
BLAST of CmoCh02G004660 vs. NCBI nr
Match: gi|700206619|gb|KGN61738.1| (hypothetical protein Csa_2G235610 [Cucumis sativus])

HSP 1 Score: 627.9 bits (1618), Expect = 1.3e-176
Identity = 329/441 (74.60%), Postives = 371/441 (84.13%), Query Frame = 1 

Query: 1   MAESNPEKKVNPN-PEMEVVKQAVNGDAGVGSSTSN-GDLSFKFNAQAPEFFPRSQTQMP 60
           MA+ NPE+K + N  EME  ++A+      GSS S+  +L+F+FNAQAPEFFPR+QTQMP
Sbjct: 1   MAQLNPEEKFSENHSEMEANQEAIINSESDGSSNSSLANLAFRFNAQAPEFFPRTQTQMP 60

Query: 61  VTGYFHPYFHFLGGAPATSDWFFIGDQEPTYLIPNPTIPLPNFSKNPRSDDIHQKLVKQV 120
           VTGYFHPYFHFLGG PA+SDWFFIGDQEP YLIPNP I LPNFSK+ RS++I QK+VKQV
Sbjct: 61  VTGYFHPYFHFLGGGPASSDWFFIGDQEPAYLIPNPNIQLPNFSKHARSEEIQQKIVKQV 120

Query: 121 EYQFSDMSLLANESLAKSISKDPDGYVPISVISSTKKVKSLSTNNNLIVQALRSSSKL-- 180
           EYQ SDMSLLANE+LAK ISKDPDGYVPIS++SSTKKVKSLSTNNN IVQALRSSS+L  
Sbjct: 121 EYQLSDMSLLANETLAKHISKDPDGYVPISILSSTKKVKSLSTNNNFIVQALRSSSRLVS 180

Query: 181 ---------------------VVSADGKKVKRKHPFTDKDKEELLSRTVVVENLPDNHSH 240
                                VVS+DGK+V+RK PFTDKDKEELL+RTVV ENLP+NHSH
Sbjct: 181 SVVEHSVLYSLLIIDQYLVPKVVSSDGKRVRRKVPFTDKDKEELLARTVVAENLPENHSH 240

Query: 241 HNLEKIFSVIGSVKTVRICHPPESNPCCSKGELFISNKLHALVEYEIAELAERAAEKLND 300
           HNLEKIFSV+GSVKT+RICHPPESNPCCSKGELF+SNKLHALVE+E AELAERA E+LND
Sbjct: 241 HNLEKIFSVVGSVKTIRICHPPESNPCCSKGELFVSNKLHALVEFETAELAERAIEQLND 300

Query: 301 ERNWRKGLRVRLLLRRSPKSVLKTRKSDFDCILDEDDSPSTVSTEQESSLPNITELINDC 360
           ERNWRKGLRVR L+RRSPKSVLK RKS+FD +LDEDDSPS VS E ES L NI +L  DC
Sbjct: 301 ERNWRKGLRVRPLVRRSPKSVLKNRKSEFDSVLDEDDSPSPVSVE-ESPLQNINDLNVDC 360

Query: 361 SSEENSTSAKKGWGRGRGKGRGRIHSHLDRSCSLPV-AAMQSSSQVVCEASSKLTTKSPR 416
           +SEENSTS KK WGRGRGKGRGRIH +LDRS SLPV +++Q+S QV+ EASSKLTTKSPR
Sbjct: 361 NSEENSTSLKKSWGRGRGKGRGRIHGNLDRSYSLPVTSSLQTSGQVLSEASSKLTTKSPR 420

[Close]
BLAST of CmoCh02G004660 vs. NCBI nr
Match: gi|590686353|ref|XP_007042354.1| (RNA-binding protein, putative isoform 1 [Theobroma cacao])

HSP 1 Score: 503.1 bits (1294), Expect = 4.8e-139
Identity = 267/423 (63.12%), Postives = 330/423 (78.01%), Query Frame = 1 

Query: 1   MAESNPEKKVNPNPEMEV-VKQAV--------NGDAGVGSSTSNGDLSFKFNAQAPEFFP 60
           MA++ PE+K    P+ +  +K A+        N  +  GSSTSN  ++FKFNAQAPEF P
Sbjct: 1   MAQAQPEEKPKEEPQEKFQMKDAMAAKRTTSCNSGSSNGSSTSNS-VTFKFNAQAPEFVP 60

Query: 61  RSQTQMPVTGYFHPYFHFLGGAPATSDWFFIGDQEPT-YLIPNPTIPLPNFS-KNPRSDD 120
           RS TQ+P++GY++P FH+LGGA   SDWFF+GDQEP  YLI NP +P+PN S KN  +DD
Sbjct: 61  RSHTQVPLSGYYYPCFHYLGGAGG-SDWFFVGDQEPADYLISNPNLPIPNCSSKNLLTDD 120

Query: 121 IHQKLVKQVEYQFSDMSLLANESLAKSISKDPDGYVPISVISSTKKVKSLSTNNNLIVQA 180
           + QK+++QVEYQF+DMSLLANESL+K ISKDP+GYV IS I+S KK+KSL TNN L+ QA
Sbjct: 121 LRQKIIRQVEYQFNDMSLLANESLSKQISKDPEGYVSISFIASMKKIKSLITNNQLLAQA 180

Query: 181 LRSSSKLVVSADGKKVKRKHPFTDKDKEELLSRTVVVENLPDNHSHHNLEKIFSVIGSVK 240
           LRSSSKLVVS DGKKVKRKHPFT+K +EE+ SRTVV+ENLP++HSH NL+KIF+V+GSV+
Sbjct: 181 LRSSSKLVVSDDGKKVKRKHPFTEKKREEVASRTVVIENLPEDHSHQNLDKIFNVVGSVQ 240

Query: 241 TVRICHPPESNPCCSKGELFISNKLHALVEYEIAELAERAAEKLNDERNWRKGLRVRLLL 300
            +RICHP ESN   SK + F+ NKLHALVEYE  E+AE+A +KLNDERNWRKGLRVRLLL
Sbjct: 241 NIRICHPQESNSSRSKSDFFMCNKLHALVEYESTEIAEKAVDKLNDERNWRKGLRVRLLL 300

Query: 301 RRSPKSVLKTRKSDFDCILDEDDSPSTVSTEQESSLPNITELINDCSSEENSTSAKKGWG 360
           R SPKSVLK+RKS+FD ILDED+SP      ++SSL NI E I + + ++N+  +KKGWG
Sbjct: 301 RLSPKSVLKSRKSEFDGILDEDESP-VAEYSEDSSLSNIAEAIENNADQDNAVGSKKGWG 360

Query: 361 RGRGKGRGRIHSHLDRSCSLPVAAMQSSSQVVCEASSKLTTKSPRMPDGTKGFTMGRGKP 413
           +GRGKGRGR+ +H  R   L  A  Q  S V CEAS K T+K PRMPDGT+GFTMGRGKP
Sbjct: 361 KGRGKGRGRVQNHSGR--GLIAACPQPGSAVQCEASVKQTSKGPRMPDGTRGFTMGRGKP 418

[Close]
BLAST of CmoCh02G004660 vs. NCBI nr
Match: gi|590686356|ref|XP_007042355.1| (RNA-binding protein, putative isoform 2 [Theobroma cacao])

HSP 1 Score: 498.4 bits (1282), Expect = 1.2e-137
Identity = 267/424 (62.97%), Postives = 330/424 (77.83%), Query Frame = 1 

Query: 1   MAESNPEKKVNPNPEMEV-VKQAV--------NGDAGVGSSTSNGDLSFKFNAQAPEFFP 60
           MA++ PE+K    P+ +  +K A+        N  +  GSSTSN  ++FKFNAQAPEF P
Sbjct: 1   MAQAQPEEKPKEEPQEKFQMKDAMAAKRTTSCNSGSSNGSSTSNS-VTFKFNAQAPEFVP 60

Query: 61  RSQTQMPVTGYFHPYFHFLGGAPATSDWFFIGDQEPT-YLIPNPTIPLPNFS-KNPRSDD 120
           RS TQ+P++GY++P FH+LGGA   SDWFF+GDQEP  YLI NP +P+PN S KN  +DD
Sbjct: 61  RSHTQVPLSGYYYPCFHYLGGAGG-SDWFFVGDQEPADYLISNPNLPIPNCSSKNLLTDD 120

Query: 121 IHQKLVKQVEYQFSDMSLLANESLAKSISKDPDGYVPISVISSTKKVKSLSTNNNLIVQA 180
           + QK+++QVEYQF+DMSLLANESL+K ISKDP+GYV IS I+S KK+KSL TNN L+ QA
Sbjct: 121 LRQKIIRQVEYQFNDMSLLANESLSKQISKDPEGYVSISFIASMKKIKSLITNNQLLAQA 180

Query: 181 LRSSSKLVVSADGKKVKRKHPFTDKDKEELLSRTVVVENLPDNHSHHNLEKIFSVIGSVK 240
           LRSSSKLVVS DGKKVKRKHPFT+K +EE+ SRTVV+ENLP++HSH NL+KIF+V+GSV+
Sbjct: 181 LRSSSKLVVSDDGKKVKRKHPFTEKKREEVASRTVVIENLPEDHSHQNLDKIFNVVGSVQ 240

Query: 241 TVRICHPPESNPCCSKGELFISN-KLHALVEYEIAELAERAAEKLNDERNWRKGLRVRLL 300
            +RICHP ESN   SK + F+ N KLHALVEYE  E+AE+A +KLNDERNWRKGLRVRLL
Sbjct: 241 NIRICHPQESNSSRSKSDFFMCNKKLHALVEYESTEIAEKAVDKLNDERNWRKGLRVRLL 300

Query: 301 LRRSPKSVLKTRKSDFDCILDEDDSPSTVSTEQESSLPNITELINDCSSEENSTSAKKGW 360
           LR SPKSVLK+RKS+FD ILDED+SP      ++SSL NI E I + + ++N+  +KKGW
Sbjct: 301 LRLSPKSVLKSRKSEFDGILDEDESP-VAEYSEDSSLSNIAEAIENNADQDNAVGSKKGW 360

Query: 361 GRGRGKGRGRIHSHLDRSCSLPVAAMQSSSQVVCEASSKLTTKSPRMPDGTKGFTMGRGK 413
           G+GRGKGRGR+ +H  R   L  A  Q  S V CEAS K T+K PRMPDGT+GFTMGRGK
Sbjct: 361 GKGRGKGRGRVQNHSGR--GLIAACPQPGSAVQCEASVKQTSKGPRMPDGTRGFTMGRGK 419

The following BLAST results are available for this feature:
BLAST of CmoCh02G004660 vs. Swiss-Prot
Match NameE-valueIdentityDescription
LRP6C_ARATH4.5e-10551.83La-related protein 6C OS=Arabidopsis thaliana GN=LARP6C PE=3 SV=1[more]
LRP6B_ARATH1.5e-5538.78La-related protein 6B OS=Arabidopsis thaliana GN=LARP6B PE=1 SV=2[more]
LRP6A_ARATH4.9e-4337.70La-related protein 6A OS=Arabidopsis thaliana GN=LARP6A PE=2 SV=1[more]
LARP7_MOUSE5.5e-1835.26La-related protein 7 OS=Mus musculus GN=Larp7 PE=1 SV=2[more]
LARP7_RAT7.2e-1835.26La-related protein 7 OS=Rattus norvegicus GN=Larp7 PE=1 SV=2[more]
BLAST of CmoCh02G004660 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LIU3_CUCSA9.0e-17774.60Uncharacterized protein OS=Cucumis sativus GN=Csa_2G235610 PE=4 SV=1[more]
A0A061DZS6_THECC3.4e-13963.12RNA-binding protein, putative isoform 1 OS=Theobroma cacao GN=TCM_007000 PE=4 SV... [more]
A0A061E1L4_THECC8.3e-13862.97RNA-binding protein, putative isoform 2 OS=Theobroma cacao GN=TCM_007000 PE=4 SV... [more]
M5VJI3_PRUPE4.2e-13464.30Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa024894mg PE=4 SV=1[more]
A0A0D2RSF5_GOSRA2.6e-13162.26Uncharacterized protein OS=Gossypium raimondii GN=B456_005G240000 PE=4 SV=1[more]
BLAST of CmoCh02G004660 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G19090.12.6e-10651.83 RNA-binding protein[more]
AT2G43970.18.3e-5738.78 RNA-binding protein[more]
AT5G46250.12.8e-4437.70 RNA-binding protein[more]
AT4G32720.11.2e-0728.37 La protein 1[more]
AT4G35890.16.7e-0634.94 winged-helix DNA-binding transcription factor family protein[more]
BLAST of CmoCh02G004660 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659118627|ref|XP_008459218.1|3.5e-18278.66PREDICTED: la-related protein 6C [Cucumis melo][more]
gi|778669150|ref|XP_004153773.2|1.5e-18078.71PREDICTED: la-related protein 6C [Cucumis sativus][more]
gi|700206619|gb|KGN61738.1|1.3e-17674.60hypothetical protein Csa_2G235610 [Cucumis sativus][more]
gi|590686353|ref|XP_007042354.1|4.8e-13963.12RNA-binding protein, putative isoform 1 [Theobroma cacao][more]
gi|590686356|ref|XP_007042355.1|1.2e-13762.97RNA-binding protein, putative isoform 2 [Theobroma cacao][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR002344Lupus_La
IPR006630La_HTH
IPR011991Winged helix-turn-helix DNA-binding domain
IPR012677Nucleotide-bd_a/b_plait_sf
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0003723RNA binding
GO:0000166nucleotide binding
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO:0030529intracellular ribonucleoprotein complex
Vocabulary: Biological Process
TermDefinition
GO:0006396RNA processing
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0006396 RNA processing
cellular_component GO:0030529 intracellular ribonucleoprotein complex
cellular_component GO:0005634 nucleus
cellular_component GO:0005575 cellular_component
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0003723 RNA binding
molecular_function GO:0003676 nucleic acid binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh02G004660.1CmoCh02G004660.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 204..275
score: 2.
IPR000504RNA recognition motif domainPROFILEPS50102RRMcoord: 202..292
score: 10
IPR002344Lupus La proteinPRINTSPR00302LUPUSLAcoord: 143..158
score: 2.9E-6coord: 196..212
score: 2.9E-6coord: 117..134
score: 2.9E-6coord: 174..187
score: 2.
IPR006630RNA-binding protein Lupus LaPFAMPF05383Lacoord: 114..171
score: 7.1
IPR006630RNA-binding protein Lupus LaSMARTSM00715lacoord: 108..188
score: 1.2
IPR006630RNA-binding protein Lupus LaPROFILEPS50961HTH_LAcoord: 104..195
score: 23
IPR011991Winged helix-turn-helix DNA-binding domainGENE3DG3DSA:1.10.10.10coord: 106..188
score: 2.6
IPR011991Winged helix-turn-helix DNA-binding domainunknownSSF46785"Winged helix" DNA-binding domaincoord: 106..191
score: 2.9
IPR012677Nucleotide-binding alpha-beta plait domainGENE3DG3DSA:3.30.70.330coord: 189..287
score: 7.1
IPR012677Nucleotide-binding alpha-beta plait domainunknownSSF54928RNA-binding domain, RBDcoord: 188..295
score: 4.21
NoneNo IPR availablePANTHERPTHR22792LUPUS LA PROTEIN-RELATEDcoord: 15..411
score: 4.2E
NoneNo IPR availablePANTHERPTHR22792:SF62LA-RELATED PROTEIN 6Ccoord: 15..411
score: 4.2E

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh02G004660CmaCh02G004580Cucurbita maxima (Rimu)cmacmoB619
CmoCh02G004660Cp4.1LG05g12040Cucurbita pepo (Zucchini)cmocpeB595
CmoCh02G004660Cla97C09G178930Watermelon (97103) v2cmowmbB634
CmoCh02G004660Carg24044Silver-seed gourdcarcmoB1415
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh02G004660Cucumber (Chinese Long) v3cmocucB0689
CmoCh02G004660Watermelon (97103) v2cmowmbB637
CmoCh02G004660Cucurbita moschata (Rifu)cmocmoB404
CmoCh02G004660Cucumber (Gy14) v1cgycmoB0879
CmoCh02G004660Cucurbita maxima (Rimu)cmacmoB554
CmoCh02G004660Wild cucumber (PI 183967)cmocpiB584
CmoCh02G004660Cucumber (Chinese Long) v2cmocuB579
CmoCh02G004660Melon (DHL92) v3.5.1cmomeB524
CmoCh02G004660Watermelon (Charleston Gray)cmowcgB507
CmoCh02G004660Watermelon (97103) v1cmowmB541
CmoCh02G004660Cucurbita pepo (Zucchini)cmocpeB575
CmoCh02G004660Bottle gourd (USVL1VR-Ls)cmolsiB533
CmoCh02G004660Cucumber (Gy14) v2cgybcmoB222
CmoCh02G004660Melon (DHL92) v3.6.1cmomedB604
CmoCh02G004660Melon (DHL92) v3.6.1cmomedB605