CmoCh02G003470 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh02G003470
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	SAUR-like auxin-responsive protein family
Location	Cmo_Chr02 : 1748684 .. 1749487 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAATCCAGTTGCCTTTGATACTCCTCGATGCCAAGCAAGTTCTCAAAAAGCAAGCTATTTCTACAACAAACCAATCTGACGTTCCGAAGGGTCACGTTGCAGTCTATGACGGAGAAATCGAAAGGAAGCGGTTTCAGTTCCGAAACCATACTTAAACTATTCTACATTCGTGACTTTACTTAAAGAGGACTGAGGAAGAGTTTAGATACAATGATCCTATGGGGTTTGACAATCCCTGCAGAGAAGATGCCTTCGTTAATCTCACTTCTACGCTACATAGCTTTTGAAAGATTATGTACAGATAGAAATCCCTAACATTCTTTTGTTCATTTTTAGTTAGAAAAACTCTTCTTGAAACTGAAGGGATAGAAAAGGAGGTTAATTACCCTCCAATCGACACAGTATCGAGCCCATATGAAGATAGGGGAAACCCAACTTTTCATAGGTTCAAAAACCATACAAGATATGTGTTCTGGTGTAAACCTGATATATTAAATCTGACAATATTTAGATGTGCATGCTTTATGCTCACAATAAACAAGTCAACATACTTGGGCTGAAAATGATGGTAGAACTTTGTGGATGATTTATGCCTCTAAGAGTTAGCATTTTTTGACTAAGCTATGTACTTTGACTTGGTCTTTTAGTTTTCGTTAATGAGAACCATTCTTTGATAGGGTCCACAATTTGGTACATATAAGGCCTGCAGAGTCTCCTTTGACCTAGACATTGACGTAGCTGGTCACTCTCTCATGGAAAGCCAATCACATGGAGGTTCTGTTCTTCCATTTTCAACGTAA

mRNA sequence

ATGGGAATCCAGTTGCCTTTGATACTCCTCGATGCCAAGCAAGTTCTCAAAAAGCAAGCTATTTCTACAACAAACCAATCTGACGTTCCGAAGGGTCACGTTGCAGTCTATGACGGAGAAATCGAAAGGAAGCGAAAAACTCTTCTTGAAACTGAAGGGATAGAAAAGGAGGGTCCACAATTTGGTACATATAAGGCCTGCAGAGTCTCCTTTGACCTAGACATTGACGTAGCTGGTCACTCTCTCATGGAAAGCCAATCACATGGAGGTTCTGTTCTTCCATTTTCAACGTAA

Coding sequence (CDS)

ATGGGAATCCAGTTGCCTTTGATACTCCTCGATGCCAAGCAAGTTCTCAAAAAGCAAGCTATTTCTACAACAAACCAATCTGACGTTCCGAAGGGTCACGTTGCAGTCTATGACGGAGAAATCGAAAGGAAGCGAAAAACTCTTCTTGAAACTGAAGGGATAGAAAAGGAGGGTCCACAATTTGGTACATATAAGGCCTGCAGAGTCTCCTTTGACCTAGACATTGACGTAGCTGGTCACTCTCTCATGGAAAGCCAATCACATGGAGGTTCTGTTCTTCCATTTTCAACGTAA

Homology

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BLAST of CmoCh02G003470 vs. TrEMBL
Match: A0A0A0LM74_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G258830 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 6.4e-09
Identity = 33/45 (73.33%), Postives = 39/45 (86.67%), Query Frame = 1


Query: 1  MGIQLPLILLDAKQVLKKQAISTTNQSDVPKGHVAVYDGEIERKR 46
          MGI+LP ILL+AKQ+LK QA+S  NQ DVPKGH+AVY GEI+RKR
Sbjct: 1  MGIRLPSILLNAKQILKMQAMSARNQFDVPKGHIAVYVGEIQRKR 45

[Close]

BLAST of CmoCh02G003470 vs. TrEMBL
Match: A0A0A0LPJ1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G258820 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 1.1e-08
Identity = 33/45 (73.33%), Postives = 39/45 (86.67%), Query Frame = 1


Query: 1  MGIQLPLILLDAKQVLKKQAISTTNQSDVPKGHVAVYDGEIERKR 46
          MGI+L  ILL+AKQ+LK QA+S  NQSDVPKGH+AVY GEI+RKR
Sbjct: 1  MGIRLQSILLNAKQILKMQAMSARNQSDVPKGHIAVYVGEIQRKR 45

[Close]

BLAST of CmoCh02G003470 vs. TrEMBL
Match: A0A059ANC9_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_I01364 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 4.6e-07
Identity = 31/45 (68.89%), Postives = 34/45 (75.56%), Query Frame = 1


Query: 1  MGIQLPLILLDAKQVLKKQAISTTNQSDVPKGHVAVYDGEIERKR 46
          MGI+LP I+   KQVLK Q   T NQSDVPKGHV VY GEI+RKR
Sbjct: 1  MGIRLPSIVAHTKQVLKLQPFGTRNQSDVPKGHVVVYVGEIQRKR 45

[Close]

BLAST of CmoCh02G003470 vs. TrEMBL
Match: A0A0A0LM71_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G258780 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 6.0e-07
Identity = 29/45 (64.44%), Postives = 36/45 (80.00%), Query Frame = 1


Query: 1  MGIQLPLILLDAKQVLKKQAISTTNQSDVPKGHVAVYDGEIERKR 46
          MGI+LP +LL+AKQV K   +S+ NQ  VPKGH+AVY G+IERKR
Sbjct: 1  MGIRLPSLLLNAKQVFKMHTVSSRNQCGVPKGHIAVYVGDIERKR 45

[Close]

BLAST of CmoCh02G003470 vs. TrEMBL
Match: A0A0A0LPH3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G258670 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 7.9e-07
Identity = 27/45 (60.00%), Postives = 38/45 (84.44%), Query Frame = 1


Query: 1  MGIQLPLILLDAKQVLKKQAISTTNQSDVPKGHVAVYDGEIERKR 46
          MGI++P +LL+AKQ+ + Q++ST   S++PKGH+AVY GEIERKR
Sbjct: 1  MGIRMPSLLLNAKQIFRMQSVSTRCHSNIPKGHIAVYVGEIERKR 45

[Close]

BLAST of CmoCh02G003470 vs. NCBI nr
Match: gi|778669614|ref|XP_011649278.1| (PREDICTED: auxin-induced protein 15A-like [Cucumis sativus])

HSP 1 Score: 70.9 bits (172), Expect = 1.4e-09
Identity = 35/45 (77.78%), Postives = 40/45 (88.89%), Query Frame = 1


Query: 1  MGIQLPLILLDAKQVLKKQAISTTNQSDVPKGHVAVYDGEIERKR 46
          MGI+LP ILL+AKQVLK QA+S  NQSDVPKGH+AVY GEI+RKR
Sbjct: 1  MGIRLPSILLNAKQVLKMQAMSARNQSDVPKGHIAVYVGEIQRKR 45

[Close]

BLAST of CmoCh02G003470 vs. NCBI nr
Match: gi|659115604|ref|XP_008457639.1| (PREDICTED: auxin-induced protein 15A-like [Cucumis melo])

HSP 1 Score: 68.6 bits (166), Expect = 7.1e-09
Identity = 34/45 (75.56%), Postives = 40/45 (88.89%), Query Frame = 1


Query: 1  MGIQLPLILLDAKQVLKKQAISTTNQSDVPKGHVAVYDGEIERKR 46
          MGI+LP ILL+AKQVLK QA+S  NQSDVPKG++AVY GEI+RKR
Sbjct: 1  MGIRLPSILLNAKQVLKMQAMSARNQSDVPKGYIAVYVGEIQRKR 45

[Close]

BLAST of CmoCh02G003470 vs. NCBI nr
Match: gi|778669611|ref|XP_011649277.1| (PREDICTED: auxin-induced protein X15-like [Cucumis sativus])

HSP 1 Score: 68.2 bits (165), Expect = 9.2e-09
Identity = 33/45 (73.33%), Postives = 39/45 (86.67%), Query Frame = 1


Query: 1  MGIQLPLILLDAKQVLKKQAISTTNQSDVPKGHVAVYDGEIERKR 46
          MGI+LP ILL+AKQ+LK QA+S  NQ DVPKGH+AVY GEI+RKR
Sbjct: 1  MGIRLPSILLNAKQILKMQAMSARNQFDVPKGHIAVYVGEIQRKR 45

[Close]

BLAST of CmoCh02G003470 vs. NCBI nr
Match: gi|700206767|gb|KGN61886.1| (hypothetical protein Csa_2G258820 [Cucumis sativus])

HSP 1 Score: 67.4 bits (163), Expect = 1.6e-08
Identity = 33/45 (73.33%), Postives = 39/45 (86.67%), Query Frame = 1


Query: 1  MGIQLPLILLDAKQVLKKQAISTTNQSDVPKGHVAVYDGEIERKR 46
          MGI+L  ILL+AKQ+LK QA+S  NQSDVPKGH+AVY GEI+RKR
Sbjct: 1  MGIRLQSILLNAKQILKMQAMSARNQSDVPKGHIAVYVGEIQRKR 45

[Close]

BLAST of CmoCh02G003470 vs. NCBI nr
Match: gi|629089209|gb|KCW55462.1| (hypothetical protein EUGRSUZ_I01364 [Eucalyptus grandis])

HSP 1 Score: 62.0 bits (149), Expect = 6.6e-07
Identity = 31/45 (68.89%), Postives = 34/45 (75.56%), Query Frame = 1


Query: 1  MGIQLPLILLDAKQVLKKQAISTTNQSDVPKGHVAVYDGEIERKR 46
          MGI+LP I+   KQVLK Q   T NQSDVPKGHV VY GEI+RKR
Sbjct: 1  MGIRLPSIVAHTKQVLKLQPFGTRNQSDVPKGHVVVYVGEIQRKR 45

The following BLAST results are available for this feature:

BLAST of CmoCh02G003470 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh02G003470 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LM74_CUCSA	6.4e-09	73.33	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G258830 PE=4 SV=1	[more]
A0A0A0LPJ1_CUCSA	1.1e-08	73.33	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G258820 PE=4 SV=1	[more]
A0A059ANC9_EUCGR	4.6e-07	68.89	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_I01364 PE=4 SV=1	[more]
A0A0A0LM71_CUCSA	6.0e-07	64.44	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G258780 PE=4 SV=1	[more]
A0A0A0LPH3_CUCSA	7.9e-07	60.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G258670 PE=4 SV=1	[more]

BLAST of CmoCh02G003470 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmoCh02G003470 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778669614\|ref\|XP_011649278.1\|	1.4e-09	77.78	PREDICTED: auxin-induced protein 15A-like [Cucumis sativus]	[more]
gi\|659115604\|ref\|XP_008457639.1\|	7.1e-09	75.56	PREDICTED: auxin-induced protein 15A-like [Cucumis melo]	[more]
gi\|778669611\|ref\|XP_011649277.1\|	9.2e-09	73.33	PREDICTED: auxin-induced protein X15-like [Cucumis sativus]	[more]
gi\|700206767\|gb\|KGN61886.1\|	1.6e-08	73.33	hypothetical protein Csa_2G258820 [Cucumis sativus]	[more]
gi\|629089209\|gb\|KCW55462.1\|	6.6e-07	68.89	hypothetical protein EUGRSUZ_I01364 [Eucalyptus grandis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009733	response to auxin
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh02G003470.1	CmoCh02G003470.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR31929	FAMILY NOT NAMED	coord: 2..45 score: 4.9
None	No IPR available	PANTHER	PTHR31929:SF13	SUBFAMILY NOT NAMED	coord: 2..45 score: 4.9

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh02G003470	CmoCh20G007890	Cucurbita moschata (Rifu)	cmocmoB416

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh02G003470	Watermelon (97103) v1	cmowmB580
CmoCh02G003470	Watermelon (97103) v1	cmowmB603
CmoCh02G003470	Cucurbita pepo (Zucchini)	cmocpeB575
CmoCh02G003470	Cucurbita pepo (Zucchini)	cmocpeB595
CmoCh02G003470	Bottle gourd (USVL1VR-Ls)	cmolsiB533
CmoCh02G003470	Cucumber (Gy14) v2	cgybcmoB220
CmoCh02G003470	Cucumber (Gy14) v2	cgybcmoB944
CmoCh02G003470	Melon (DHL92) v3.6.1	cmomedB606
CmoCh02G003470	Silver-seed gourd	carcmoB0436
CmoCh02G003470	Cucumber (Chinese Long) v3	cmocucB0687
CmoCh02G003470	Watermelon (97103) v2	cmowmbB587
CmoCh02G003470	Wax gourd	cmowgoB0736
CmoCh02G003470	Cucurbita moschata (Rifu)	cmocmoB388
CmoCh02G003470	Cucurbita moschata (Rifu)	cmocmoB404
CmoCh02G003470	Cucumber (Gy14) v1	cgycmoB0483
CmoCh02G003470	Cucumber (Gy14) v1	cgycmoB1053
CmoCh02G003470	Cucurbita maxima (Rimu)	cmacmoB554
CmoCh02G003470	Cucurbita maxima (Rimu)	cmacmoB619
CmoCh02G003470	Wild cucumber (PI 183967)	cmocpiB582
CmoCh02G003470	Wild cucumber (PI 183967)	cmocpiB644
CmoCh02G003470	Cucumber (Chinese Long) v2	cmocuB577
CmoCh02G003470	Cucumber (Chinese Long) v2	cmocuB633
CmoCh02G003470	Melon (DHL92) v3.5.1	cmomeB527
CmoCh02G003470	Melon (DHL92) v3.5.1	cmomeB552
CmoCh02G003470	Watermelon (Charleston Gray)	cmowcgB515
CmoCh02G003470	Watermelon (Charleston Gray)	cmowcgB530