CmoCh02G003370 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh02G003370
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	SAUR-like auxin-responsive protein family
Location	Cmo_Chr02 : 1729727 .. 1733175 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAATCAGACTACCTTCACTTCTCCTTAATGCTAAGCAAATTGTAAGAATGCAGACGGTTTCTTCAAGAAGCCAATGTGGTGTTCCAAAGGGTCATATTGCAGTCTATGTGGGGGAGACCGAAAGGAAGCGGTTTGTAGTTCTGATATCATACTTGAACCATCCTTCTTTCGTAGCTCTACTCAAGACAGCTGAAGAAGAATTTGGATTTAAACATCCAACAGGAGGTTTAACCATTCCTTGCAGAGAAGATGCCTTCCTCAACCTCACTTCTAGGCTGCATACTCCCTGAAAGAGAGGAAAAACAATCCTACACATAGTTTTGTAGAATTCCTTTCATTTTTTTCTTCTTTTTGCCACAGTTGAGGAGTAGAATGTCAATACATAGTTAGTACCAATTTGATGAAGAAGCAAAAGTTGATTCAACATCAATGTACAATTTATAATTGCAGAGATGTAAATAGAAATGGAGTCACATTTTCTTATAAAAAACTGCCTCCTTCGGCCTCTGAGTTTCAGTTTGTTTAAACTCTCAGTCTTTCCTTGATGTTTAGTCGGACGTTGGTACATTTTTTTTTTCATAGAAATAAAAGATCATTGAAGAAAAGAGACTAATGCTCAAAAGACACAAGCTCTCGAGAGGAAAAAGAGTATAAAAGAACCATAGAAAGCATTCCAATCCAATTCAAACATGTCTCATAAGGAAAATCCAGTAAAGGGATCAGATAAAGAACAGCAAAAAGACGCCTTAAAATGAGCTAATTCAAAACGGTTGATCCAAGAAAAATTCTCATCTTCAAACATCCTCTTAGTTAGTTTTACATTTTCTAACTTGGCTAATCAGTTGCTTCTTTCTTGAGGATTAGATGGAAATAGAAATCTTCCTTCATTTTTATGATAAATGCTCTGTGCTTGAGTTTTGTCAAATGTCTTGTTGCATGATAAAATGAGAAAATACACAGAACTTATATCTCATAATTCATGAATTAAAGGGATAAAGTTTATCGGTGAAAGAAATATAATTTTATAGTTGTGCCAACACAATTTTATACATGCTATAATGTTCAGGAAGATGGGCAAATTGAGGCTTTCTGATCCGTGCTTGATCTTACAATCACCAACTCGAAATAGGCTACCAAAGAGCAAATGTCGGCATATCTTCATCATCCGGTGGGCACTAGGATGTGAAGCTGGAAACAAAGATTCTTCCTTTGTTGACTGCTCTGGCTCGGTATTGTGTCAATTGGGGGTAATTAACCACCTTTTCTATCCCTTCAGATTCAATAAGAGTTTTTCTAACTAAAAATGAACAAAAGAATCTTGGGGATTTCTATTCGTGCATAATCTTTCAAACTATGTAACCTAGAAGTGAGATCAATGAAGACATCTTCTCTGTAGGGGATTGTCAAGCCGGCCATAGGATGATTGTATTCAAACTCTTCCTCAGCCCTCTTAAGTAAAGCCATGAATGTAGGATGGTTTTAAGTATGATATCGGAATTAAAAACCTCTTTCTTTGGATTTCTCCAACATAGACTGCAACGTGACCCTTCGAAACATCATATTGGTTTCTTGTAGAAATAGCTTGCTTTTTAAGAACCTGTTTTGGATTTCTCAAAAAGCAAGCTATTTCTACAAGAAACCAATCTAATGTTCCGAAGGGTCGTATTGCAGTCTATGTGATATGAACCAAGAGACATCAATCATACAATATACTTCAATGAAGATGTGAAGAAAAGGTTGTCAAAATTATCAAAAAGATGTTTCAATTCATGCTACATTGAAGAAGAATGAAGTTTGATTGTTGTAAATTTTGGGTGGGTTACAATTTAGAGTAATTTAGAGTTATTGTATTTTAAGACTTGTTATTTAATTTCGGTTACATTTACATAATGGCTAATTATGGCCATAAAGTAGGAATGTTACAACTTTTGGAATGCCTTTAATAGTTTCATTTTGAGGCTATATAAAGCCATCTATGTTGTATTTGTAAGAGAGACTTAGAAGATATATCAAAAGAAGCATTTGTGCTTTTCTTTAGCCAATGGCTAATTTTCTTTGCAATTCTATGTAGTTTAGATTGCATGTAGAATCATTCAAGCTCGACATGATCAATCTTGCTTGTGGAGTGATTCGAATCTCAAACAAGTGTTTGAGATATTTGATCAACAAGAATCATTGAAGCTAGACATGATCGATCTTGCTTCTGGAGTGATTCGAATCTCAAACAAAGTGTTCTTGACTTGAGATATTCGATCAACAAGGTAATCTGAATCTTACTCCCCTTGTAGTGATTCCTTATCTTATCATTTGGTATCAGAGCTTCAGGCTCAAGATCGGATATATGTTTCCTTTGCGTTTCTTCTCAATTTAATTTTTATTTATTTTCATCTTTTTAGTTTTTAATCGACCCAAAGTTCAAAATTCAATCTTTGCTCTATTTAAAATTTTGAGAGGTGAGAATGAGAGCTTCATTTGTGTAAATGAGTGCAAACAGAGTGGCCTAAAATTCCTTGAGTGTATACACGTGAGAGAGTGTTGTGAGGTCCTTTGTATTTCCATAACTTATTTTTTGCAGCAAAGTTTCACAAATAGATTCGAGGACGAATCCTCTTGAAGAAGTGGAGAATGATATGAACCAAGAGACATCAATCATACAATATACTTCAATGAAGATGTGAAGAAAAGGTTGTCAAAATTATCAAAAAGATGTTTCAATTCATGCTACATTGAAGAAGAATAAAGTTTGATTGTTGTAAATTTTGGGTGGGTTATAATTTAGAGTTATTGTGTTTTAAGACTTTTTATTTAATTTCGGTTACATTTACATAATGGCTAATTATGGCCATAAAGTGTGAATGTTACAACTTTTGGAATGCCTTTAATAGTTTCATTTTGAGGCTATATAAAGCCATGTATGTTGTATTTGTAAGAGAGACTTAGAAGATATATCAAAAGAAGCATTTGTGCTTTTCTTTAGCCAATGGCTAATTTTCTTTGCAATTCTATGTAGTTTAGATTGCATGTAGAATCATTCAAGCTCGACATGATCAATCTTGCTTGTGGAGTGATTCGAATCTCAAACAAGTGTTTGAGATATTTGATCAACAAGAATCATTGAAGCTAGACATGATCGATCTTGCTTCTGGAGTGATTCGAATCTCAAACAAAGTGTTCTTGACTTGAGATATTCGATCAACAAGGTAATCTGAATCTTACTCCCCTTGTAGTGATTCCTTATCTTATCACTATGTTAGAGAAATTCAAAGGAACCTACTTTGGATTCAGTTTGCTTTGGATCTGTTTGAACTTAGAAGTTTGAATCTTCAAGATGCTGCTTAGTTTCTTTAGTGATGTGCTATGCTCTAGCAACAATTTTTCTTTGTTCCATGGATTGCAGGTTACCATCACAAATAAAGCAACAAAGAAAAGGCTATATAGAAATTGA

mRNA sequence

ATGGGAATCAGACTACCTTCACTTCTCCTTAATGCTAAGCAAATTGTAAGAATGCAGACGGTTTCTTCAAGAAGCCAATGTGGTGTTCCAAAGGGTCATATTGCAGTCTATGTGGGGGAGACCGAAAGGAAGCGGAAGATGGGCAAATTGAGGCTTTCTGATCCGTGCTTGATCTTACAATCACCAACTCGAAATAGGCTACCAAAGAGCAAATGTCGGCATATCTTCATCATCCGGTGGGCACTAGGATGTGAAGCTGGAAACAAAGATTCTTCCTTTGTTGACTGCTCTGGCTCGGTTACCATCACAAATAAAGCAACAAAGAAAAGGCTATATAGAAATTGA

Coding sequence (CDS)

ATGGGAATCAGACTACCTTCACTTCTCCTTAATGCTAAGCAAATTGTAAGAATGCAGACGGTTTCTTCAAGAAGCCAATGTGGTGTTCCAAAGGGTCATATTGCAGTCTATGTGGGGGAGACCGAAAGGAAGCGGAAGATGGGCAAATTGAGGCTTTCTGATCCGTGCTTGATCTTACAATCACCAACTCGAAATAGGCTACCAAAGAGCAAATGTCGGCATATCTTCATCATCCGGTGGGCACTAGGATGTGAAGCTGGAAACAAAGATTCTTCCTTTGTTGACTGCTCTGGCTCGGTTACCATCACAAATAAAGCAACAAAGAAAAGGCTATATAGAAATTGA

Homology

[Close]

BLAST of CmoCh02G003370 vs. TrEMBL
Match: A0A0A0LM71_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G258780 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 1.1e-12
Identity = 38/45 (84.44%), Postives = 42/45 (93.33%), Query Frame = 1


Query: 1  MGIRLPSLLLNAKQIVRMQTVSSRSQCGVPKGHIAVYVGETERKR 46
          MGIRLPSLLLNAKQ+ +M TVSSR+QCGVPKGHIAVYVG+ ERKR
Sbjct: 1  MGIRLPSLLLNAKQVFKMHTVSSRNQCGVPKGHIAVYVGDIERKR 45

[Close]

BLAST of CmoCh02G003370 vs. TrEMBL
Match: A0A0A0LPH3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G258670 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 3.1e-10
Identity = 35/45 (77.78%), Postives = 39/45 (86.67%), Query Frame = 1


Query: 1  MGIRLPSLLLNAKQIVRMQTVSSRSQCGVPKGHIAVYVGETERKR 46
          MGIR+PSLLLNAKQI RMQ+VS+R    +PKGHIAVYVGE ERKR
Sbjct: 1  MGIRMPSLLLNAKQIFRMQSVSTRCHSNIPKGHIAVYVGEIERKR 45

[Close]

BLAST of CmoCh02G003370 vs. TrEMBL
Match: A0A0A0LM74_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G258830 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 5.2e-10
Identity = 34/45 (75.56%), Postives = 41/45 (91.11%), Query Frame = 1


Query: 1  MGIRLPSLLLNAKQIVRMQTVSSRSQCGVPKGHIAVYVGETERKR 46
          MGIRLPS+LLNAKQI++MQ +S+R+Q  VPKGHIAVYVGE +RKR
Sbjct: 1  MGIRLPSILLNAKQILKMQAMSARNQFDVPKGHIAVYVGEIQRKR 45

[Close]

BLAST of CmoCh02G003370 vs. TrEMBL
Match: A0A0A0LM65_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G258730 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 3.4e-09
Identity = 33/45 (73.33%), Postives = 40/45 (88.89%), Query Frame = 1


Query: 1  MGIRLPSLLLNAKQIVRMQTVSSRSQCGVPKGHIAVYVGETERKR 46
          MGIRLPS+LL+AKQI++M+TVS+R Q  VPKGHI VYVGE +RKR
Sbjct: 1  MGIRLPSVLLSAKQILKMKTVSTRCQSDVPKGHIPVYVGENQRKR 45

[Close]

BLAST of CmoCh02G003370 vs. TrEMBL
Match: A0A0A0LPJ1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G258820 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 3.4e-09
Identity = 33/45 (73.33%), Postives = 40/45 (88.89%), Query Frame = 1


Query: 1  MGIRLPSLLLNAKQIVRMQTVSSRSQCGVPKGHIAVYVGETERKR 46
          MGIRL S+LLNAKQI++MQ +S+R+Q  VPKGHIAVYVGE +RKR
Sbjct: 1  MGIRLQSILLNAKQILKMQAMSARNQSDVPKGHIAVYVGEIQRKR 45

[Close]

BLAST of CmoCh02G003370 vs. NCBI nr
Match: gi|449458562|ref|XP_004147016.1| (PREDICTED: auxin-induced protein 15A-like [Cucumis sativus])

HSP 1 Score: 80.9 bits (198), Expect = 1.6e-12
Identity = 38/45 (84.44%), Postives = 42/45 (93.33%), Query Frame = 1


Query: 1  MGIRLPSLLLNAKQIVRMQTVSSRSQCGVPKGHIAVYVGETERKR 46
          MGIRLPSLLLNAKQ+ +M TVSSR+QCGVPKGHIAVYVG+ ERKR
Sbjct: 1  MGIRLPSLLLNAKQVFKMHTVSSRNQCGVPKGHIAVYVGDIERKR 45

[Close]

BLAST of CmoCh02G003370 vs. NCBI nr
Match: gi|659115600|ref|XP_008457637.1| (PREDICTED: auxin-induced protein 15A-like [Cucumis melo])

HSP 1 Score: 79.3 bits (194), Expect = 4.7e-12
Identity = 37/45 (82.22%), Postives = 41/45 (91.11%), Query Frame = 1


Query: 1  MGIRLPSLLLNAKQIVRMQTVSSRSQCGVPKGHIAVYVGETERKR 46
          MGIRLPSLL NAKQ+ +M TVSSR+QCGVPKGHIAVYVG+ ERKR
Sbjct: 1  MGIRLPSLLFNAKQVFKMHTVSSRNQCGVPKGHIAVYVGDIERKR 45

[Close]

BLAST of CmoCh02G003370 vs. NCBI nr
Match: gi|778669580|ref|XP_011649270.1| (PREDICTED: auxin-induced protein 15A-like [Cucumis sativus])

HSP 1 Score: 72.8 bits (177), Expect = 4.4e-10
Identity = 35/45 (77.78%), Postives = 39/45 (86.67%), Query Frame = 1


Query: 1  MGIRLPSLLLNAKQIVRMQTVSSRSQCGVPKGHIAVYVGETERKR 46
          MGIR+PSLLLNAKQI RMQ+VS+R    +PKGHIAVYVGE ERKR
Sbjct: 1  MGIRMPSLLLNAKQIFRMQSVSTRCHSNIPKGHIAVYVGEIERKR 45

[Close]

BLAST of CmoCh02G003370 vs. NCBI nr
Match: gi|778669614|ref|XP_011649278.1| (PREDICTED: auxin-induced protein 15A-like [Cucumis sativus])

HSP 1 Score: 72.0 bits (175), Expect = 7.5e-10
Identity = 33/45 (73.33%), Postives = 41/45 (91.11%), Query Frame = 1


Query: 1  MGIRLPSLLLNAKQIVRMQTVSSRSQCGVPKGHIAVYVGETERKR 46
          MGIRLPS+LLNAKQ+++MQ +S+R+Q  VPKGHIAVYVGE +RKR
Sbjct: 1  MGIRLPSILLNAKQVLKMQAMSARNQSDVPKGHIAVYVGEIQRKR 45

[Close]

BLAST of CmoCh02G003370 vs. NCBI nr
Match: gi|778669611|ref|XP_011649277.1| (PREDICTED: auxin-induced protein X15-like [Cucumis sativus])

HSP 1 Score: 72.0 bits (175), Expect = 7.5e-10
Identity = 34/45 (75.56%), Postives = 41/45 (91.11%), Query Frame = 1


Query: 1  MGIRLPSLLLNAKQIVRMQTVSSRSQCGVPKGHIAVYVGETERKR 46
          MGIRLPS+LLNAKQI++MQ +S+R+Q  VPKGHIAVYVGE +RKR
Sbjct: 1  MGIRLPSILLNAKQILKMQAMSARNQFDVPKGHIAVYVGEIQRKR 45

The following BLAST results are available for this feature:

BLAST of CmoCh02G003370 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh02G003370 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LM71_CUCSA	1.1e-12	84.44	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G258780 PE=4 SV=1	[more]
A0A0A0LPH3_CUCSA	3.1e-10	77.78	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G258670 PE=4 SV=1	[more]
A0A0A0LM74_CUCSA	5.2e-10	75.56	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G258830 PE=4 SV=1	[more]
A0A0A0LM65_CUCSA	3.4e-09	73.33	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G258730 PE=4 SV=1	[more]
A0A0A0LPJ1_CUCSA	3.4e-09	73.33	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G258820 PE=4 SV=1	[more]

BLAST of CmoCh02G003370 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmoCh02G003370 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449458562\|ref\|XP_004147016.1\|	1.6e-12	84.44	PREDICTED: auxin-induced protein 15A-like [Cucumis sativus]	[more]
gi\|659115600\|ref\|XP_008457637.1\|	4.7e-12	82.22	PREDICTED: auxin-induced protein 15A-like [Cucumis melo]	[more]
gi\|778669580\|ref\|XP_011649270.1\|	4.4e-10	77.78	PREDICTED: auxin-induced protein 15A-like [Cucumis sativus]	[more]
gi\|778669614\|ref\|XP_011649278.1\|	7.5e-10	73.33	PREDICTED: auxin-induced protein 15A-like [Cucumis sativus]	[more]
gi\|778669611\|ref\|XP_011649277.1\|	7.5e-10	75.56	PREDICTED: auxin-induced protein X15-like [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009733	response to auxin
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh02G003370.1	CmoCh02G003370.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR31929	FAMILY NOT NAMED	coord: 2..45 score: 5.0
None	No IPR available	PANTHER	PTHR31929:SF13	SUBFAMILY NOT NAMED	coord: 2..45 score: 5.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh02G003370	CsaV3_2G015560	Cucumber (Chinese Long) v3	cmocucB0687
CmoCh02G003370	Cla97C11G210270	Watermelon (97103) v2	cmowmbB587

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh02G003370	CmoCh20G007790	Cucurbita moschata (Rifu)	cmocmoB404

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh02G003370	Wild cucumber (PI 183967)	cmocpiB582
CmoCh02G003370	Wild cucumber (PI 183967)	cmocpiB644
CmoCh02G003370	Cucumber (Chinese Long) v2	cmocuB577
CmoCh02G003370	Cucumber (Chinese Long) v2	cmocuB633
CmoCh02G003370	Melon (DHL92) v3.5.1	cmomeB527
CmoCh02G003370	Melon (DHL92) v3.5.1	cmomeB552
CmoCh02G003370	Watermelon (Charleston Gray)	cmowcgB515
CmoCh02G003370	Watermelon (Charleston Gray)	cmowcgB530
CmoCh02G003370	Watermelon (97103) v1	cmowmB580
CmoCh02G003370	Watermelon (97103) v1	cmowmB603
CmoCh02G003370	Cucurbita pepo (Zucchini)	cmocpeB575
CmoCh02G003370	Cucurbita pepo (Zucchini)	cmocpeB595
CmoCh02G003370	Bottle gourd (USVL1VR-Ls)	cmolsiB533
CmoCh02G003370	Cucumber (Gy14) v2	cgybcmoB220
CmoCh02G003370	Cucumber (Gy14) v2	cgybcmoB944
CmoCh02G003370	Melon (DHL92) v3.6.1	cmomedB606
CmoCh02G003370	Silver-seed gourd	carcmoB0436
CmoCh02G003370	Wax gourd	cmowgoB0736
CmoCh02G003370	Cucurbita moschata (Rifu)	cmocmoB388
CmoCh02G003370	Cucurbita moschata (Rifu)	cmocmoB416
CmoCh02G003370	Cucumber (Gy14) v1	cgycmoB0483
CmoCh02G003370	Cucumber (Gy14) v1	cgycmoB1053
CmoCh02G003370	Cucurbita maxima (Rimu)	cmacmoB554
CmoCh02G003370	Cucurbita maxima (Rimu)	cmacmoB619