CmoCh02G003270 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh02G003270
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionTransmembrane protein, putative
LocationCmo_Chr02 : 1685323 .. 1685619 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGTGGGTACAACCAAAGAGGAGAGGGCCTCTCCAGGGATTGGCAGGACAAACCCTAGGGTCTGTTTCATCTCCACCACCACAATTGCTCACCATTTTTGGCATTGTCATTGCGTTGCTTTGGTTCTCTCAGCACACGGGCAATGAAGAATCTCAAATGTTTGGGACACCCGCCAGTTTCCAGCTGGTTCTTTTCTTGTTGCCCATCTTGCTGGTTTTCTTCATGTCTTCATATTCCATGGGTGGACTGATCAACTTCCGATTTCGGCAACTGCCATTCGGGTCGACTCGATGA

mRNA sequence

ATGGAGTGGGTACAACCAAAGAGGAGAGGGCCTCTCCAGGGATTGGCAGGACAAACCCTAGGGTCTGTTTCATCTCCACCACCACAATTGCTCACCATTTTTGGCATTGTCATTGCGTTGCTTTGGTTCTCTCAGCACACGGGCAATGAAGAATCTCAAATGTTTGGGACACCCGCCAGTTTCCAGCTGGTTCTTTTCTTGTTGCCCATCTTGCTGGTTTTCTTCATGTCTTCATATTCCATGGGTGGACTGATCAACTTCCGATTTCGGCAACTGCCATTCGGGTCGACTCGATGA

Coding sequence (CDS)

ATGGAGTGGGTACAACCAAAGAGGAGAGGGCCTCTCCAGGGATTGGCAGGACAAACCCTAGGGTCTGTTTCATCTCCACCACCACAATTGCTCACCATTTTTGGCATTGTCATTGCGTTGCTTTGGTTCTCTCAGCACACGGGCAATGAAGAATCTCAAATGTTTGGGACACCCGCCAGTTTCCAGCTGGTTCTTTTCTTGTTGCCCATCTTGCTGGTTTTCTTCATGTCTTCATATTCCATGGGTGGACTGATCAACTTCCGATTTCGGCAACTGCCATTCGGGTCGACTCGATGA
Homology
[Close]
BLAST of CmoCh02G003270 vs. TrEMBL
Match: A0A067JUL1_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19592 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 2.0e-18
Identity = 52/93 (55.91%), Postives = 67/93 (72.04%), Query Frame = 1 

Query: 1  MEWVQPKRRGP--LQGLAGQTLGSVSSPPPQLLTIFGIVIALLWFSQHTGNEESQMFGTP 60
          MEW  PKRRGP   QG AGQT+ S+S+PPP LLTIFGIVI LLW SQ+TG  ++Q+  + 
Sbjct: 1  MEWFYPKRRGPDWKQGWAGQTMNSISTPPPSLLTIFGIVILLLWLSQYTG-YKAQLRHSA 60

Query: 61 ASFQLVLFLLPILLVFFMSSYSMGGLINFRFRQ 92
           +FQL +FLLPILL+  ++  S   ++ FR RQ
Sbjct: 61 INFQLFIFLLPILLILLLACSSTNWMLYFRHRQ 92

[Close]
BLAST of CmoCh02G003270 vs. TrEMBL
Match: A0A0A0LLH8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G263890 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 2.0e-18
Identity = 59/99 (59.60%), Postives = 66/99 (66.67%), Query Frame = 1 

Query: 1  MEWVQPKRRGP--LQGLAG--QTLGSVSSPPPQLLTIFGIVIALLWFSQHTGNEESQMFG 60
          M+   PKRRGP   +GL G  QTL SVS PP QLL IFGIVI LLWFSQ     E+Q+  
Sbjct: 1  MDCFYPKRRGPEWKRGLTGTGQTLSSVSPPPIQLLIIFGIVIVLLWFSQFNAGHEAQL-- 60

Query: 61 TPASFQLVLFLLPILLVFFMSSYSMGGLINFRFRQLPFG 96
             SFQL LFLLPI ++FFM SYS   LINF FR+ P G
Sbjct: 61 -NRSFQLFLFLLPIFVIFFMYSYSSSRLINFGFRRSPTG 96

[Close]
BLAST of CmoCh02G003270 vs. TrEMBL
Match: B9STD1_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0660950 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 2.6e-18
Identity = 52/93 (55.91%), Postives = 66/93 (70.97%), Query Frame = 1 

Query: 1  MEWVQPKRRGP--LQGLAGQTLGSVSSPPPQLLTIFGIVIALLWFSQHTGNEESQMFGTP 60
          MEW  P+RRGP   QG  GQTLGS+S PPP LL IFGIVI LLW SQ+T + ++Q+  + 
Sbjct: 1  MEWFYPRRRGPEWKQGWTGQTLGSISIPPPPLLVIFGIVILLLWLSQYT-DYKAQLHHSA 60

Query: 61 ASFQLVLFLLPILLVFFMSSYSMGGLINFRFRQ 92
           +FQL LFLLP+LL+  ++SYS   +  FR RQ
Sbjct: 61 INFQLFLFLLPVLLILLIASYSTNWMPYFRLRQ 92

[Close]
BLAST of CmoCh02G003270 vs. TrEMBL
Match: B9H148_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s17510g PE=4 SV=2)

HSP 1 Score: 97.4 bits (241), Expect = 1.0e-17
Identity = 52/95 (54.74%), Postives = 66/95 (69.47%), Query Frame = 1 

Query: 1  MEWVQPKRRGP--LQGLAGQTLGSVSSPPPQLLTIFGIVIALLWFSQHTGNEESQMFGTP 60
          MEW  PKRRGP   QG  GQT+ S+S+PP  LL IFGIVI+LLW S +TG  E+Q+  + 
Sbjct: 1  MEWFYPKRRGPEWKQGWTGQTVASMSTPPFPLLAIFGIVISLLWLSHYTG-YEAQLRHSA 60

Query: 61 ASFQLVLFLLPILLVFFMSSYSMGGLINFRFRQLP 94
           + Q+ LFLLPILL+ FM+SYS   L+ +R R  P
Sbjct: 61 INLQIFLFLLPILLILFMASYSTNWLLYYRLRDSP 94

[Close]
BLAST of CmoCh02G003270 vs. TrEMBL
Match: B9HRB2_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0009s13190g PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 1.3e-17
Identity = 52/92 (56.52%), Postives = 65/92 (70.65%), Query Frame = 1 

Query: 1  MEWVQPKRRGP--LQGLAGQTLGSVSSPPPQLLTIFGIVIALLWFSQHTGNEESQMFGTP 60
          MEW  PKRRGP   QG  GQT+GSVSSPP  LL IFGIVI+LLW S +TG  ++Q+  + 
Sbjct: 1  MEWFYPKRRGPEWKQGWTGQTMGSVSSPPLPLLAIFGIVISLLWLSHYTG-YKAQLHHSA 60

Query: 61 ASFQLVLFLLPILLVFFMSSYSMGGLINFRFR 91
           + Q+ L LLPILL+ FM+SYS   L+ +R R
Sbjct: 61 INLQIFLVLLPILLILFMASYSTNWLLYYRLR 91

[Close]
BLAST of CmoCh02G003270 vs. NCBI nr
Match: gi|802708179|ref|XP_012084459.1| (PREDICTED: F-box protein At5g07610-like [Jatropha curcas])

HSP 1 Score: 99.8 bits (247), Expect = 2.9e-18
Identity = 52/93 (55.91%), Postives = 67/93 (72.04%), Query Frame = 1 

Query: 1  MEWVQPKRRGP--LQGLAGQTLGSVSSPPPQLLTIFGIVIALLWFSQHTGNEESQMFGTP 60
          MEW  PKRRGP   QG AGQT+ S+S+PPP LLTIFGIVI LLW SQ+TG  ++Q+  + 
Sbjct: 1  MEWFYPKRRGPDWKQGWAGQTMNSISTPPPSLLTIFGIVILLLWLSQYTG-YKAQLRHSA 60

Query: 61 ASFQLVLFLLPILLVFFMSSYSMGGLINFRFRQ 92
           +FQL +FLLPILL+  ++  S   ++ FR RQ
Sbjct: 61 INFQLFIFLLPILLILLLACSSTNWMLYFRHRQ 92

[Close]
BLAST of CmoCh02G003270 vs. NCBI nr
Match: gi|700206775|gb|KGN61894.1| (hypothetical protein Csa_2G263890 [Cucumis sativus])

HSP 1 Score: 99.8 bits (247), Expect = 2.9e-18
Identity = 59/99 (59.60%), Postives = 66/99 (66.67%), Query Frame = 1 

Query: 1  MEWVQPKRRGP--LQGLAG--QTLGSVSSPPPQLLTIFGIVIALLWFSQHTGNEESQMFG 60
          M+   PKRRGP   +GL G  QTL SVS PP QLL IFGIVI LLWFSQ     E+Q+  
Sbjct: 1  MDCFYPKRRGPEWKRGLTGTGQTLSSVSPPPIQLLIIFGIVIVLLWFSQFNAGHEAQL-- 60

Query: 61 TPASFQLVLFLLPILLVFFMSSYSMGGLINFRFRQLPFG 96
             SFQL LFLLPI ++FFM SYS   LINF FR+ P G
Sbjct: 61 -NRSFQLFLFLLPIFVIFFMYSYSSSRLINFGFRRSPTG 96

[Close]
BLAST of CmoCh02G003270 vs. NCBI nr
Match: gi|643715646|gb|KDP27587.1| (hypothetical protein JCGZ_19592 [Jatropha curcas])

HSP 1 Score: 99.8 bits (247), Expect = 2.9e-18
Identity = 52/93 (55.91%), Postives = 67/93 (72.04%), Query Frame = 1 

Query: 1  MEWVQPKRRGP--LQGLAGQTLGSVSSPPPQLLTIFGIVIALLWFSQHTGNEESQMFGTP 60
          MEW  PKRRGP   QG AGQT+ S+S+PPP LLTIFGIVI LLW SQ+TG  ++Q+  + 
Sbjct: 1  MEWFYPKRRGPDWKQGWAGQTMNSISTPPPSLLTIFGIVILLLWLSQYTG-YKAQLRHSA 60

Query: 61 ASFQLVLFLLPILLVFFMSSYSMGGLINFRFRQ 92
           +FQL +FLLPILL+  ++  S   ++ FR RQ
Sbjct: 61 INFQLFIFLLPILLILLLACSSTNWMLYFRHRQ 92

[Close]
BLAST of CmoCh02G003270 vs. NCBI nr
Match: gi|255576725|ref|XP_002529250.1| (PREDICTED: uncharacterized protein LOC8285145 [Ricinus communis])

HSP 1 Score: 99.4 bits (246), Expect = 3.8e-18
Identity = 52/93 (55.91%), Postives = 66/93 (70.97%), Query Frame = 1 

Query: 1  MEWVQPKRRGP--LQGLAGQTLGSVSSPPPQLLTIFGIVIALLWFSQHTGNEESQMFGTP 60
          MEW  P+RRGP   QG  GQTLGS+S PPP LL IFGIVI LLW SQ+T + ++Q+  + 
Sbjct: 1  MEWFYPRRRGPEWKQGWTGQTLGSISIPPPPLLVIFGIVILLLWLSQYT-DYKAQLHHSA 60

Query: 61 ASFQLVLFLLPILLVFFMSSYSMGGLINFRFRQ 92
           +FQL LFLLP+LL+  ++SYS   +  FR RQ
Sbjct: 61 INFQLFLFLLPVLLILLIASYSTNWMPYFRLRQ 92

[Close]
BLAST of CmoCh02G003270 vs. NCBI nr
Match: gi|1009151193|ref|XP_015893423.1| (PREDICTED: uncharacterized protein LOC107427552 [Ziziphus jujuba])

HSP 1 Score: 97.8 bits (242), Expect = 1.1e-17
Identity = 56/98 (57.14%), Postives = 68/98 (69.39%), Query Frame = 1 

Query: 1  MEWVQPKRRGP--LQGLAGQTLGSVSSPPPQLLTIFGIVIALLWFSQHTGNEESQMFGTP 60
          MEW   KRRGP   QG   QTL S+S+PP  LLTIF IVI LLWFSQ+TG  ++Q   T 
Sbjct: 1  MEWFYTKRRGPEWKQGWTSQTLTSMSAPPFHLLTIFAIVIFLLWFSQYTG-YKAQFQQTA 60

Query: 61 ASFQLVLFLLPILLVFFMSSYSMGGLINFRFRQLPFGS 97
           +FQL L +LP+LL+ FM+SYS GGL N + R+ P GS
Sbjct: 61 INFQLFLMVLPLLLILFMASYSSGGLFNLQLRR-PEGS 96

The following BLAST results are available for this feature:
BLAST of CmoCh02G003270 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh02G003270 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A067JUL1_JATCU2.0e-1855.91Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19592 PE=4 SV=1[more]
A0A0A0LLH8_CUCSA2.0e-1859.60Uncharacterized protein OS=Cucumis sativus GN=Csa_2G263890 PE=4 SV=1[more]
B9STD1_RICCO2.6e-1855.91Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0660950 PE=4 SV=1[more]
B9H148_POPTR1.0e-1754.74Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s17510g PE=4 SV=2[more]
B9HRB2_POPTR1.3e-1756.52Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0009s13190g PE=4 SV=1[more]
BLAST of CmoCh02G003270 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmoCh02G003270 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|802708179|ref|XP_012084459.1|2.9e-1855.91PREDICTED: F-box protein At5g07610-like [Jatropha curcas][more]
gi|700206775|gb|KGN61894.1|2.9e-1859.60hypothetical protein Csa_2G263890 [Cucumis sativus][more]
gi|643715646|gb|KDP27587.1|2.9e-1855.91hypothetical protein JCGZ_19592 [Jatropha curcas][more]
gi|255576725|ref|XP_002529250.1|3.8e-1855.91PREDICTED: uncharacterized protein LOC8285145 [Ricinus communis][more]
gi|1009151193|ref|XP_015893423.1|1.1e-1757.14PREDICTED: uncharacterized protein LOC107427552 [Ziziphus jujuba][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh02G003270.1CmoCh02G003270.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33306FAMILY NOT NAMEDcoord: 1..92
score: 1.3
NoneNo IPR availablePANTHERPTHR33306:SF4SUBFAMILY NOT NAMEDcoord: 1..92
score: 1.3

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh02G003270Cla001665Watermelon (97103) v1cmowmB584
CmoCh02G003270ClCG02G011420Watermelon (Charleston Gray)cmowcgB546
CmoCh02G003270Cp4.1LG16g03140Cucurbita pepo (Zucchini)cmocpeB575
CmoCh02G003270MELO3C020779.2Melon (DHL92) v3.6.1cmomedB606
CmoCh02G003270CsaV3_2G015680Cucumber (Chinese Long) v3cmocucB0687
CmoCh02G003270Cla97C02G037110Watermelon (97103) v2cmowmbB598
CmoCh02G003270Bhi10G001508Wax gourdcmowgoB0736
CmoCh02G003270Carg19801Silver-seed gourdcarcmoB1156
CmoCh02G003270Carg16195Silver-seed gourdcarcmoB0475
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh02G003270Cucumber (Gy14) v2cgybcmoB220
CmoCh02G003270Cucumber (Gy14) v2cgybcmoB944
CmoCh02G003270Silver-seed gourdcarcmoB0436
CmoCh02G003270Watermelon (97103) v2cmowmbB587
CmoCh02G003270Cucurbita moschata (Rifu)cmocmoB388
CmoCh02G003270Cucurbita moschata (Rifu)cmocmoB404
CmoCh02G003270Cucumber (Gy14) v1cgycmoB0483
CmoCh02G003270Cucumber (Gy14) v1cgycmoB1053
CmoCh02G003270Cucurbita maxima (Rimu)cmacmoB554
CmoCh02G003270Cucurbita maxima (Rimu)cmacmoB619
CmoCh02G003270Wild cucumber (PI 183967)cmocpiB582
CmoCh02G003270Wild cucumber (PI 183967)cmocpiB644
CmoCh02G003270Cucumber (Chinese Long) v2cmocuB577
CmoCh02G003270Cucumber (Chinese Long) v2cmocuB633
CmoCh02G003270Melon (DHL92) v3.5.1cmomeB527
CmoCh02G003270Melon (DHL92) v3.5.1cmomeB552
CmoCh02G003270Watermelon (Charleston Gray)cmowcgB536
CmoCh02G003270Watermelon (Charleston Gray)cmowcgB515
CmoCh02G003270Watermelon (Charleston Gray)cmowcgB530
CmoCh02G003270Watermelon (97103) v1cmowmB597
CmoCh02G003270Watermelon (97103) v1cmowmB580
CmoCh02G003270Watermelon (97103) v1cmowmB603
CmoCh02G003270Cucurbita pepo (Zucchini)cmocpeB595
CmoCh02G003270Bottle gourd (USVL1VR-Ls)cmolsiB533