CmoCh02G002150 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh02G002150
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionUnknown protein
LocationCmo_Chr02 : 990980 .. 991692 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGTCCAAAGGTTTTCTGCTTGTGTGTCTTCTGGTTGTGTCTGCTTTGGTGGTGTCGTGGGCTATAGAAGCTCACACAAGCGAAGATGAGCAACAAGGTATTTGTTTGTACCATGATTTTAATCCATGTTTGCATGAAGACACGTAAGTAATCATTAATTTGATAATCCTCTAGTTTCAGAGAATGTAGCCCAGGAGGTTGAAGAGGCTAAACATGGGCATGGTGGCGGCGGTTATGGAGGCGGTGGGTCTGGCGGCGGCGGTCAAGGTGGAGGTGGGTCTGGTGGCGGCGGTCATGGCGGAGGTGGGTCTGGTGGCGGTGGTCAAGGCGAAGGTGGTTATGGTGGAGGTGGGTCTGGTGGTAGTGGATCTGGCGGTGGCGGCAAAGGAGGAGGTGGATCTGGTGGTAGTGGATCTGGCGGTGGCGGTAAAGGGGGAGGTGGATATGGCGGTGGAGGGTCTGGCGGAGGAGGGAAAGGAGGCGGTGGATACGGCGGAGGTGGAAAAGGAGGCGGTGGGAGTGGCAGTGGAGGAGGAGGGAAAGGAGGAGGGAAAGGAGGCGGGGGATACGGCGGAGGAGGAGGAGGAGGAGGAGGTGGAGGAGGAGGTTATGAAGAGAGTGAGTATACAAGAGGAGGACGAGGAGGGTGGAAGGGAGGAGGTGGAGGAAAAGGCGGCGGCGGTGGAAAAGGTGGCGGCGGCGGAAAGTGA

mRNA sequence

ATGAAGTCCAAAGGTTTTCTGCTTGTGTGTCTTCTGGTTGTGTCTGCTTTGGTGGTGTCGTGGGCTATAGAAGCTCACACAAGCGAAGATGAGCAACAAGGTATTTTTTCAGAGAATGTAGCCCAGGAGGTTGAAGAGGCTAAACATGGGCATGGTGGCGGCGGTTATGGAGGCGGTGGGTCTGGCGGCGGCGGTCAAGGTGGAGGTGGGTCTGGTGGCGGCGGTCATGGCGGAGGTGGGTCTGGTGGCGGTGGTCAAGGCGAAGGTGGTTATGGTGGAGGTGGGTCTGGTGGTAGTGGATCTGGCGGTGGCGGCAAAGGAGGAGGTGGATCTGGTGGTAGTGGATCTGGCGGTGGCGGTAAAGGGGGAGGTGGATATGGCGGTGGAGGGTCTGGCGGAGGAGGGAAAGGAGGCGGTGGATACGGCGGAGGTGGAAAAGGAGGCGGTGGGAGTGGCAGTGGAGGAGGAGGGAAAGGAGGAGGGAAAGGAGGCGGGGGATACGGCGGAGGAGGAGGAGGAGGAGGAGGTGGAGGAGGAGGTTATGAAGAGAGTGAGTATACAAGAGGAGGACGAGGAGGGTGGAAGGGAGGAGGTGGAGGAAAAGGCGGCGGCGGTGGAAAAGGTGGCGGCGGCGGAAAGTGA

Coding sequence (CDS)

ATGAAGTCCAAAGGTTTTCTGCTTGTGTGTCTTCTGGTTGTGTCTGCTTTGGTGGTGTCGTGGGCTATAGAAGCTCACACAAGCGAAGATGAGCAACAAGGTATTTTTTCAGAGAATGTAGCCCAGGAGGTTGAAGAGGCTAAACATGGGCATGGTGGCGGCGGTTATGGAGGCGGTGGGTCTGGCGGCGGCGGTCAAGGTGGAGGTGGGTCTGGTGGCGGCGGTCATGGCGGAGGTGGGTCTGGTGGCGGTGGTCAAGGCGAAGGTGGTTATGGTGGAGGTGGGTCTGGTGGTAGTGGATCTGGCGGTGGCGGCAAAGGAGGAGGTGGATCTGGTGGTAGTGGATCTGGCGGTGGCGGTAAAGGGGGAGGTGGATATGGCGGTGGAGGGTCTGGCGGAGGAGGGAAAGGAGGCGGTGGATACGGCGGAGGTGGAAAAGGAGGCGGTGGGAGTGGCAGTGGAGGAGGAGGGAAAGGAGGAGGGAAAGGAGGCGGGGGATACGGCGGAGGAGGAGGAGGAGGAGGAGGTGGAGGAGGAGGTTATGAAGAGAGTGAGTATACAAGAGGAGGACGAGGAGGGTGGAAGGGAGGAGGTGGAGGAAAAGGCGGCGGCGGTGGAAAAGGTGGCGGCGGCGGAAAGTGA
Homology
[Close]
BLAST of CmoCh02G002150 vs. NCBI nr
Match: gi|778674428|ref|XP_011650210.1| (PREDICTED: glycine-rich cell wall structural protein 1.0-like [Cucumis sativus])

HSP 1 Score: 60.5 bits (145), Expect = 4.2e-06
Identity = 159/247 (64.37%), Postives = 172/247 (69.64%), Query Frame = 1 

Query: 1   MKSKGFLLVCLLVVSALVVSWAIEAHT--SEDEQQGIFSENVAQEVEEAKHGHGGGG--- 60
           MKSKGF+ VCLL+VSALVVSWAIE+HT  ++DEQQ     N+A ++EE K+ HGGGG   
Sbjct: 54  MKSKGFVFVCLLLVSALVVSWAIESHTESTQDEQQ----VNLAHDLEEPKYTHGGGGSYG 113

Query: 61  ---------------------YGGGGSGGGGQGGGGSGGGGHGG---GGSGGGG------ 120
                                +GGGGSGGGGQG GGSGGGG GG   GGSGGGG      
Sbjct: 114 GGGGGSSGGGSSGGGYGGGGSHGGGGSGGGGQGSGGSGGGGQGGSGGGGSGGGGSYGGGG 173

Query: 121 QGEGGYGGGGSGGSGSGGGGKGGGGSG--GSGSGGGGKG--GGGYGGGGSG--GGGKGGG 180
           +G GG  GGG GGSGS GGGKGGGGSG  G G GGGG G  GGG GGGGSG  GGGKGGG
Sbjct: 174 KGGGGGKGGGGGGSGSSGGGKGGGGSGSGGGGKGGGGSGSSGGGKGGGGSGSGGGGKGGG 233

Query: 181 GYG--GGGKGGGGSGSGGGGKGGGKGGGGYGGGGGGGGGGGGGYEESEYTRGG---RGGW 202
           G G  GGGKGGGGSGSGGGGKGGG GG G GGG GGGGGGGGGYE+ EY +GG    GGW
Sbjct: 234 GSGSSGGGKGGGGSGSGGGGKGGGGGGKGGGGGKGGGGGGGGGYEDREYKKGGDGSEGGW 293

The following BLAST results are available for this feature:
BLAST of CmoCh02G002150 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh02G002150 vs. TrEMBL
Match NameE-valueIdentityDescription
BLAST of CmoCh02G002150 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmoCh02G002150 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778674428|ref|XP_011650210.1|4.2e-0664.37PREDICTED: glycine-rich cell wall structural protein 1.0-like [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh02G002150.1CmoCh02G002150.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh02G002150Carg05136Silver-seed gourdcarcmoB1094
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh02G002150Cucurbita pepo (Zucchini)cmocpeB577
CmoCh02G002150Cucurbita pepo (Zucchini)cmocpeB595
CmoCh02G002150Bottle gourd (USVL1VR-Ls)cmolsiB534
CmoCh02G002150Cucumber (Gy14) v2cgybcmoB221
CmoCh02G002150Melon (DHL92) v3.6.1cmomedB601
CmoCh02G002150Silver-seed gourdcarcmoB0474
CmoCh02G002150Cucumber (Chinese Long) v3cmocucB0688
CmoCh02G002150Watermelon (97103) v2cmowmbB604
CmoCh02G002150Wax gourdcmowgoB0748
CmoCh02G002150Wax gourdcmowgoB0757
CmoCh02G002150Cucurbita moschata (Rifu)cmocmoB406
CmoCh02G002150Cucumber (Gy14) v1cgycmoB0165
CmoCh02G002150Cucurbita maxima (Rimu)cmacmoB524
CmoCh02G002150Cucurbita maxima (Rimu)cmacmoB619
CmoCh02G002150Wild cucumber (PI 183967)cmocpiB583
CmoCh02G002150Cucumber (Chinese Long) v2cmocuB578
CmoCh02G002150Melon (DHL92) v3.5.1cmomeB523
CmoCh02G002150Watermelon (Charleston Gray)cmowcgB541
CmoCh02G002150Watermelon (97103) v1cmowmB599