CmoCh02G001840 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh02G001840
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Cellulose synthase-like protein H1
Location	Cmo_Chr02 : 882610 .. 883098 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTAGGGTACATCGAAACGGACCAATCCATAAGAGCCTGGTGGAATAACCATAGAATGGATATGATTAAGTCAATGTGTTCTTGCTTGCTTGGAGTTGTGGCTGTCCTTTTGAAGATTTTAGGACTATCAGAGACGACGTTCGAGGTAACAAAAAAGGAGTCAGCTTCTTCTAGTGATGACACAGAGAGTAGTGATAGAGATTTGGGTCGGTTCACATTTGATGAGTCCCCAATGTTTGTGCCAATCACAACCATTATGATGATTCAACTAGCGGCACTTTCAATCGGTTTCTTGGGAACACAGCCAGGCCGTCGAGAGTTTGGGGTGGGTGAGGTGACATGCAGTGTGTGGTTGGTTTTGTGCTTCTGGCCAATTTTGAAGGGGATGTTTGCAAAGGGAAGCTATGGGCTTCCATGGTCCACCCTATTCAAATCCAGTGCTTTGGCTTTCTTGTTTGTATACTTGTGTCGAATGTCTACAAAGTGA

mRNA sequence

ATGTTAGGGTACATCGAAACGGACCAATCCATAAGAGCCTGGTGGAATAACCATAGAATGGATATGATTAAGTCAATGTGTTCTTGCTTGCTTGGAGTTGTGGCTGTCCTTTTGAAGATTTTAGGACTATCAGAGACGACGTTCGAGGTAACAAAAAAGGAGTCAGCTTCTTCTAGTGATGACACAGAGAGTAGTGATAGAGATTTGGGTCGGTTCACATTTGATGAGTCCCCAATGTTTGTGCCAATCACAACCATTATGATGATTCAACTAGCGGCACTTTCAATCGGTTTCTTGGGAACACAGCCAGGCCGTCGAGAGTTTGGGGTGGGTGAGGTGACATGCAGTGTGTGGTTGGTTTTGTGCTTCTGGCCAATTTTGAAGGGGATGTTTGCAAAGGGAAGCTATGGGCTTCCATGGTCCACCCTATTCAAATCCAGTGCTTTGGCTTTCTTGTTTGTATACTTGTGTCGAATGTCTACAAAGTGA

Coding sequence (CDS)

ATGTTAGGGTACATCGAAACGGACCAATCCATAAGAGCCTGGTGGAATAACCATAGAATGGATATGATTAAGTCAATGTGTTCTTGCTTGCTTGGAGTTGTGGCTGTCCTTTTGAAGATTTTAGGACTATCAGAGACGACGTTCGAGGTAACAAAAAAGGAGTCAGCTTCTTCTAGTGATGACACAGAGAGTAGTGATAGAGATTTGGGTCGGTTCACATTTGATGAGTCCCCAATGTTTGTGCCAATCACAACCATTATGATGATTCAACTAGCGGCACTTTCAATCGGTTTCTTGGGAACACAGCCAGGCCGTCGAGAGTTTGGGGTGGGTGAGGTGACATGCAGTGTGTGGTTGGTTTTGTGCTTCTGGCCAATTTTGAAGGGGATGTTTGCAAAGGGAAGCTATGGGCTTCCATGGTCCACCCTATTCAAATCCAGTGCTTTGGCTTTCTTGTTTGTATACTTGTGTCGAATGTCTACAAAGTGA

Homology

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BLAST of CmoCh02G001840 vs. Swiss-Prot
Match: CSLH2_ORYSI (Cellulose synthase-like protein H2 OS=Oryza sativa subsp. indica GN=CSLH2 PE=3 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 2.1e-34
Identity = 74/161 (45.96%), Postives = 100/161 (62.11%), Query Frame = 1


Query: 4   YIETDQSIRAWWNNHRMDMIKSMCSCLLGVVAVLLKILGLSETTFEVTKKESASSSDDTE 63
           Y+    S RAWWNNHRM  I S+ +  L  + VLLK LGLSET FEVT K+ + S DD  
Sbjct: 600 YMACGLSARAWWNNHRMQRIISVSAWTLAFLTVLLKSLGLSETVFEVTGKDKSMSDDDDN 659

Query: 64  SSDRDLGRFTFDESPMFVPITTIMMIQLAALSIGFLGTQPGRREF-----GVGEVTCSVW 123
           +   D GRFTFD  P+F+P+T + M+ + A+++G      G  E      G+GE  C  W
Sbjct: 660 TDGADPGRFTFDSLPVFIPVTALAMLNIVAVTVGACRVAFGTAEGVPCAPGIGEFMCCGW 719

Query: 124 LVLCFWPILKG-MFAKGSYGLPWSTLFKSSALAFLFVYLCR 159
           LVLCF+P ++G ++ KGSYG+PWS   K+S L  +FV  C+
Sbjct: 720 LVLCFFPFVRGIVWGKGSYGIPWSVKLKASLLVAMFVTFCK 760

[Close]

BLAST of CmoCh02G001840 vs. Swiss-Prot
Match: CSLH2_ORYSJ (Cellulose synthase-like protein H2 OS=Oryza sativa subsp. japonica GN=CSLH2 PE=3 SV=3)

HSP 1 Score: 146.7 bits (369), Expect = 2.1e-34
Identity = 74/161 (45.96%), Postives = 100/161 (62.11%), Query Frame = 1


Query: 4   YIETDQSIRAWWNNHRMDMIKSMCSCLLGVVAVLLKILGLSETTFEVTKKESASSSDDTE 63
           Y+    S RAWWNNHRM  I S+ +  L  + VLLK LGLSET FEVT K+ + S DD  
Sbjct: 600 YMACGLSARAWWNNHRMQRIISVSAWTLAFLTVLLKSLGLSETVFEVTGKDKSMSDDDDN 659

Query: 64  SSDRDLGRFTFDESPMFVPITTIMMIQLAALSIGFLGTQPGRREF-----GVGEVTCSVW 123
           +   D GRFTFD  P+F+P+T + M+ + A+++G      G  E      G+GE  C  W
Sbjct: 660 TDGADPGRFTFDSLPVFIPVTALAMLNIVAVTVGACRVAFGTAEGVPCAPGIGEFMCCGW 719

Query: 124 LVLCFWPILKG-MFAKGSYGLPWSTLFKSSALAFLFVYLCR 159
           LVLCF+P ++G ++ KGSYG+PWS   K+S L  +FV  C+
Sbjct: 720 LVLCFFPFVRGIVWGKGSYGIPWSVKLKASLLVAMFVTFCK 760

[Close]

BLAST of CmoCh02G001840 vs. Swiss-Prot
Match: CSLH3_ORYSJ (Putative cellulose synthase-like protein H3 OS=Oryza sativa subsp. japonica GN=CSLH3 PE=3 SV=3)

HSP 1 Score: 139.8 bits (351), Expect = 2.6e-32
Identity = 70/157 (44.59%), Postives = 98/157 (62.42%), Query Frame = 1


Query: 4   YIETDQSIRAWWNNHRMDMIKSMCSCLLGVVAVLLKILGLSETTFEVTKKESASSSDDTE 63
           Y+E   S+RAWWNNHRM  I S  + LL    VLLK +GLSET FEVT+KE ++S  + +
Sbjct: 631 YMECGLSVRAWWNNHRMQRIISASAWLLAFFTVLLKTIGLSETVFEVTRKEKSTSDGNGQ 690

Query: 64  SSDRDLGRFTFDESPMFVPITTIMMIQLAALSIGFLGTQPGRREF-----GVGEVTCSVW 123
           + + D  RFTFD SP+F+P+T + M+ + A++IG      G  E      G+ E     W
Sbjct: 691 NDEVDPERFTFDASPVFIPVTALTMLNIVAITIGTWRAVFGTTEDVPGGPGISEFMSCGW 750

Query: 124 LVLCFWPILKGMFAKGSYGLPWSTLFKSSALAFLFVY 156
           L+LC  P ++G+  KGSYG+PWS   K+S L  LF++
Sbjct: 751 LLLCLLPFVRGLVGKGSYGIPWSVKLKASLLVALFLF 787

[Close]

BLAST of CmoCh02G001840 vs. Swiss-Prot
Match: CSLH1_ORYSJ (Cellulose synthase-like protein H1 OS=Oryza sativa subsp. japonica GN=CSLH1 PE=2 SV=2)

HSP 1 Score: 136.7 bits (343), Expect = 2.2e-31
Identity = 67/160 (41.88%), Postives = 99/160 (61.88%), Query Frame = 1


Query: 4   YIETDQSIRAWWNNHRMDMIKSMCSCLLGVVAVLLKILGLSETTFEVTKKESASSSDDTE 63
           +IE  QS RA WNNHRM  I S  + LL  + V+LK LG SET FEVT+K+ ++S  D+ 
Sbjct: 589 FIECGQSARACWNNHRMQRITSASAWLLAFLTVILKTLGFSETVFEVTRKDKSTSDGDSN 648

Query: 64  SSDRDLGRFTFDESPMFVPITTIMMIQLAALSIG-----FLGTQPGRREFGVGEVTCSVW 123
           + + + GRFTFDES +F+P+T + M+ + A+++G      + T+      G+ E     W
Sbjct: 649 TDEPEPGRFTFDESTVFIPVTALAMLSVIAIAVGAWRVVLVTTEGLPGGPGISEFISCGW 708

Query: 124 LVLCFWPILKGMFAKGSYGLPWSTLFKSSALAFLFVYLCR 159
           LVLCF P+L+G+   G YG+PWS   K+  L  +F+  C+
Sbjct: 709 LVLCFMPLLRGLVGSGRYGIPWSIKMKACLLVAIFLLFCK 748

[Close]

BLAST of CmoCh02G001840 vs. Swiss-Prot
Match: CSLB4_ARATH (Cellulose synthase-like protein B4 OS=Arabidopsis thaliana GN=CSLB4 PE=3 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 5.4e-22
Identity = 65/157 (41.40%), Postives = 93/157 (59.24%), Query Frame = 1


Query: 10  SIRAWWNNHRMDMIKSMCSCLLGVVAVLLKILGLSETTFEVTKKE---------SASSSD 69
           SI++W+       IK+ CS L  V+ V+LK+LG+S+T F VTKK          S  S  
Sbjct: 595 SIQSWYVTQSFGRIKTTCSWLFSVLDVILKLLGISKTVFIVTKKTMPETKSGSGSKKSQR 654

Query: 70  DTESSDRDLGRFTFDESPMFVPITTIMMIQLAALSIGFLGTQP-GRREFGVGEVTCSVWL 129
           + +  ++D G+F FD S  F+P T I+++ LAAL+   +G Q  G    G+ E    + +
Sbjct: 655 EVDCPNQDSGKFEFDGSLYFLPGTFIVLVNLAALAGCLVGLQSRGGGGSGLAEACGCILV 714

Query: 130 VLCFWPILKGMFAKGSYGLPWSTLFKSSALAFLFVYL 157
           V+ F P LKGMF KG YG+P+STL K++ LA LFV L
Sbjct: 715 VILFLPFLKGMFEKGKYGIPFSTLSKAAFLAALFVVL 751

[Close]

BLAST of CmoCh02G001840 vs. TrEMBL
Match: A0A0A0LT64_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G416170 PE=3 SV=1)

HSP 1 Score: 231.1 bits (588), Expect = 9.6e-58
Identity = 110/162 (67.90%), Postives = 131/162 (80.86%), Query Frame = 1


Query: 1   MLGYIETDQSIRAWWNNHRMDMIKSMCSCLLGVVAVLLKILGLSETTFEVTKKESASSSD 60
           +L + +T QS+RAWWNN RM+ I+ M S LLG+VAV+ KI G+SET FE+TKKES+SSSD
Sbjct: 585 LLDFFKTGQSVRAWWNNLRMEKIQKMSSSLLGIVAVIFKIFGISETVFEITKKESSSSSD 644

Query: 61  DTESSDRDLGRFTFDESPMFVPITTIMMIQLAALSIGFLGTQPGRREFGVGEVTCSVWLV 120
           D +S D DLGR TFDESP+FVP+TTI+MIQLAAL IGFL  Q   REFGV EV C +W +
Sbjct: 645 DIKSDDGDLGRLTFDESPLFVPVTTILMIQLAALYIGFLQMQASVREFGVAEVMCCLWTI 704

Query: 121 LCFWPILKGMFAKGSYGLPWSTLFKSSALAFLFVYLCRMSTK 163
           L FW  L+GMFAKG+YGLPW TLFKSS LAFLFVYLC+ +TK
Sbjct: 705 LSFWSFLRGMFAKGNYGLPWPTLFKSSVLAFLFVYLCQQTTK 746

[Close]

BLAST of CmoCh02G001840 vs. TrEMBL
Match: A0A0A0LN39_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G416190 PE=3 SV=1)

HSP 1 Score: 228.4 bits (581), Expect = 6.2e-57
Identity = 120/161 (74.53%), Postives = 130/161 (80.75%), Query Frame = 1


Query: 1   MLGYIETDQSIRAWWNNHRMDMIKSMCSCLLGVVAVLLKILGLSETTFEVTKKESASSSD 60
           +L Y ET QS RAWWNN RM  I ++C+ LLG VAV LK+LGLSET FEVTKKES+SSSD
Sbjct: 581 LLQYWETGQSARAWWNNERMARINTICASLLGAVAVALKLLGLSETVFEVTKKESSSSSD 640

Query: 61  DTESS-DRDLGRFTFDESPMFVPITTIMMIQLAALSIGFLGT-QPGRREFGVGEVTCSVW 120
           DTESS D DLGRFTFDESP+FVP TTI++IQL ALSI F    QP   EFGVGEVTCSVW
Sbjct: 641 DTESSSDGDLGRFTFDESPLFVPGTTILIIQLLALSIAFSRIRQPNVVEFGVGEVTCSVW 700

Query: 121 LVLCFWPILKGMFAKGSYGLPWSTLFKSSALAFLFVYLCRM 160
           L+LCFW  LKGMFAKG YGLPWSTL KSSALAFLFV  C M
Sbjct: 701 LILCFWSFLKGMFAKGKYGLPWSTLCKSSALAFLFVCFCIM 741

[Close]

BLAST of CmoCh02G001840 vs. TrEMBL
Match: W9R4A0_9ROSA (Cellulose synthase-like protein H1 OS=Morus notabilis GN=L484_011922 PE=3 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 4.9e-46
Identity = 93/161 (57.76%), Postives = 120/161 (74.53%), Query Frame = 1


Query: 4   YIETDQSIRAWWNNHRMDMIKSMCSCLLGVVAVLLKILGLSETTFEVTKKESASSSDDTE 63
           Y  T QSIRAWWNN +M ++ SM + +LGVV+V LKILG+SET FEVTKK+ ++SS  + 
Sbjct: 601 YFATGQSIRAWWNNQKMRIVTSMSAWVLGVVSVALKILGISETVFEVTKKDQSTSSSSSN 660

Query: 64  SSDRDLGRFTFDESPMFVPITTIMMIQLAALSIGFLGTQP---GRREFGVGEVTCSVWLV 123
            +D D GRFTFDESP+FVP+TT++++QL AL++   G QP   G    G+ +V CS WLV
Sbjct: 661 DTDGDAGRFTFDESPIFVPVTTLLLVQLMALAMVVFGMQPRARGGHGSGILDVLCSAWLV 720

Query: 124 LCFWPILKGMFAKGSYGLPWSTLFKSSALAFLFVYLCRMST 162
           LC WP+LKG+F KG YG+P STL KS+ALA LFV  CR +T
Sbjct: 721 LCLWPVLKGLFGKGKYGIPLSTLCKSTALALLFVVWCRRTT 761

[Close]

BLAST of CmoCh02G001840 vs. TrEMBL
Match: A0A068VF86_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00008789001 PE=4 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 1.8e-43
Identity = 91/161 (56.52%), Postives = 118/161 (73.29%), Query Frame = 1


Query: 4   YIETDQSIRAWWNNHRMDMIKSMCSCLLGVVAVLLKILGLSETTFEVTKKESASSSDDTE 63
           YI+T+QSI++WWNNHRM  I +M + L G ++ + KIL LS T FEVTKKE +SS+D++E
Sbjct: 584 YIQTNQSIKSWWNNHRMARIIAMTAWLCGFLSAIFKILRLSVTVFEVTKKEQSSSTDESE 643

Query: 64  SSDRDLGRFTFDESPMFVPITTIMMIQLAALSIGFLGTQPGRR----EFGVGEVTCSVWL 123
                LGRFTFD SP+FVP TTI+M+ L AL IGFL    G      E+G+GE+ CS+W+
Sbjct: 644 EK---LGRFTFDNSPVFVPGTTILMVNLTALGIGFLDFMQGNGGKIIEWGIGELVCSIWV 703

Query: 124 VLCFWPILKGMFAKGSYGLPWSTLFKSSALAFLFVYLCRMS 161
           VLCFW  LKG+  KG YG+P ST+ KS+ALAF+FV +CR S
Sbjct: 704 VLCFWSFLKGLLGKGKYGIPSSTVCKSAALAFVFVQICRSS 741

[Close]

BLAST of CmoCh02G001840 vs. TrEMBL
Match: A0A068V8L1_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00017366001 PE=4 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 2.5e-42
Identity = 89/160 (55.62%), Postives = 119/160 (74.38%), Query Frame = 1


Query: 4   YIETDQSIRAWWNNHRMDMIKSMCSCLLGVVAVLLKILGLSETTFEVTKKESASSSDDTE 63
           YI+T+QSI++WWNNHRM  I +M + L G ++V+ KIL LSET FEVTKKE +SS +D  
Sbjct: 26  YIQTNQSIKSWWNNHRMARIIAMTAWLCGFLSVIFKILRLSETVFEVTKKEQSSSIED-- 85

Query: 64  SSDRDLGRFTFDESPMFVPITTIMMIQLAALSIGF---LGTQPGRREFGVGEVTCSVWLV 123
            SD   GRFTFD SP+FVP T I+M+ L AL IGF   +  + G+ E+G+GE+ CS+W+V
Sbjct: 86  -SDEKPGRFTFDNSPVFVPGTVILMVNLIALGIGFSSFIQRRGGQIEWGIGELVCSIWVV 145

Query: 124 LCFWPILKGMFAKGSYGLPWSTLFKSSALAFLFVYLCRMS 161
           LCFW  LKG+F KG YG+P ST++KS+AL F+FV + + S
Sbjct: 146 LCFWAFLKGLFEKGKYGIPSSTIYKSAALVFVFVQIYKSS 182

[Close]

BLAST of CmoCh02G001840 vs. TAIR10
Match: AT2G32540.1 (AT2G32540.1 cellulose synthase-like B4)

HSP 1 Score: 105.5 bits (262), Expect = 3.1e-23
Identity = 65/157 (41.40%), Postives = 93/157 (59.24%), Query Frame = 1


Query: 10  SIRAWWNNHRMDMIKSMCSCLLGVVAVLLKILGLSETTFEVTKKE---------SASSSD 69
           SI++W+       IK+ CS L  V+ V+LK+LG+S+T F VTKK          S  S  
Sbjct: 595 SIQSWYVTQSFGRIKTTCSWLFSVLDVILKLLGISKTVFIVTKKTMPETKSGSGSKKSQR 654

Query: 70  DTESSDRDLGRFTFDESPMFVPITTIMMIQLAALSIGFLGTQP-GRREFGVGEVTCSVWL 129
           + +  ++D G+F FD S  F+P T I+++ LAAL+   +G Q  G    G+ E    + +
Sbjct: 655 EVDCPNQDSGKFEFDGSLYFLPGTFIVLVNLAALAGCLVGLQSRGGGGSGLAEACGCILV 714

Query: 130 VLCFWPILKGMFAKGSYGLPWSTLFKSSALAFLFVYL 157
           V+ F P LKGMF KG YG+P+STL K++ LA LFV L
Sbjct: 715 VILFLPFLKGMFEKGKYGIPFSTLSKAAFLAALFVVL 751

[Close]

BLAST of CmoCh02G001840 vs. TAIR10
Match: AT2G32530.1 (AT2G32530.1 cellulose synthase-like B3)

HSP 1 Score: 104.8 bits (260), Expect = 5.2e-23
Identity = 62/155 (40.00%), Postives = 92/155 (59.35%), Query Frame = 1


Query: 10  SIRAWWNNHRMDMIKSMCSCLLGVVAVLLKILGLSETTFEVTKKE---------SASSSD 69
           S+++W+ +     IK+ CS L  +  ++LK+LG+S+T F VTKK          S  S  
Sbjct: 595 SVQSWFASQSFWRIKTTCSWLFSIPDIILKLLGISKTVFIVTKKTMPKTMSGSGSEKSQR 654

Query: 70  DTESSDRDLGRFTFDESPMFVPITTIMMIQLAALSIGFLGTQPGRRE-FGVGEVTCSVWL 129
           + +  ++D G+F FD S  F+P T I+++ LAAL+   +G Q  R    G+ E    + +
Sbjct: 655 EVDCPNQDSGKFEFDGSLYFLPGTFILLVNLAALAGCSVGLQRHRGGGSGLAEACGCILV 714

Query: 130 VLCFWPILKGMFAKGSYGLPWSTLFKSSALAFLFV 155
           V+ F P LKGMF KG YG+PWSTL K++ LA LFV
Sbjct: 715 VILFLPFLKGMFEKGKYGIPWSTLSKAAFLAVLFV 749

[Close]

BLAST of CmoCh02G001840 vs. TAIR10
Match: AT2G32620.1 (AT2G32620.1 cellulose synthase-like B)

HSP 1 Score: 87.8 bits (216), Expect = 6.6e-18
Identity = 60/158 (37.97%), Postives = 87/158 (55.06%), Query Frame = 1


Query: 10  SIRAWWNNHRMDMIKSMCSCLLGVVAVLLKILGLSETTFEVTKK----ESASSS----DD 69
           SI++W+ +     I +  S L  +  ++LK+LGLS+  F V+KK    E+ S S      
Sbjct: 594 SIQSWYVSQSFWRIVATSSWLFSIFDIILKLLGLSKNVFLVSKKTMPVETMSGSGIGPSQ 653

Query: 70  TESSDRDLGRFTFDESPMFVPITTIMMIQLAALSIGFLGTQP-----GRREFGVGEVTCS 129
            E    + G+  FD S  F+P T I+++ LAAL   F+G Q      G    G+GE    
Sbjct: 654 REDDGPNSGKTEFDGSLYFLPGTFIVLVNLAALVGVFVGLQRSSYSHGGGGSGLGEACAC 713

Query: 130 VWLVLCFWPILKGMFAKGSYGLPWSTLFKSSALAFLFV 155
           + +V+ F+P LKG+FAKG YG+P STL K+  LA  FV
Sbjct: 714 ILVVMLFFPFLKGLFAKGKYGIPLSTLSKAGFLAVSFV 751

[Close]

BLAST of CmoCh02G001840 vs. TAIR10
Match: AT4G15290.1 (AT4G15290.1 Cellulose synthase family protein)

HSP 1 Score: 86.3 bits (212), Expect = 1.9e-17
Identity = 55/163 (33.74%), Postives = 87/163 (53.37%), Query Frame = 1


Query: 10  SIRAWWNNHRMDMIKSMCSCLLGVVAVLLKILGLSETTFEVTKK---------ESASSSD 69
           S+++W+    +  I +  S L  +  ++LK+LG+S+  F + KK         ES  S  
Sbjct: 593 SVQSWYVVQSLWRIIATSSWLFSIQDIILKLLGISQIGFVIAKKTIPETKSVYESKPSQG 652

Query: 70  DTESSDRDLGRFTFDESPMFVPITTIMMIQLAALSIGFL------GTQPGRREFGVGEVT 129
           + +    +LG+F FD S +F+P T IM++ LAAL+ G+L          G    G+ E  
Sbjct: 653 EDDVPKLNLGKFEFDSSGLFIPGTFIMLVNLAALA-GYLVRLQRSSCSHGGGGSGLAEAC 712

Query: 130 CSVWLVLCFWPILKGMFAKGSYGLPWSTLFKSSALAFLFVYLC 158
             + +V+ F P LKG+F  G Y +P STL K++ L  LFV+ C
Sbjct: 713 GCILVVMLFLPFLKGLFEHGKYSIPLSTLSKAAFLTVLFVFFC 754

[Close]

BLAST of CmoCh02G001840 vs. TAIR10
Match: AT2G32610.1 (AT2G32610.1 cellulose synthase-like B1)

HSP 1 Score: 82.0 bits (201), Expect = 3.6e-16
Identity = 59/167 (35.33%), Postives = 88/167 (52.69%), Query Frame = 1


Query: 2   LGYIETDQSIRAWWNNHRMDMIKSMCSCLLGVVAVLLKILGLSETTFEVTKK-----ESA 61
           LGY     S+++W  +  +  I +  S L  +  + LK+LG+SET F +TKK     +SA
Sbjct: 592 LGY-----SVQSWLVSQSVWRIVATSSWLFSIFDITLKLLGISETVFIITKKTVAGTKSA 651

Query: 62  SSSDDTESSD----RDLGRFTFDESPMFVPITTIMMIQLAALSIGFLGTQPGRREF---- 121
             S  ++  D     DL +F FD S  F+P T I+++ +AAL++  +G Q          
Sbjct: 652 LGSGPSQGEDVGPNSDLFKFEFDGSLCFLPGTFIVLVNIAALAVFSVGLQRSSYSHEGGG 711

Query: 122 -GVGEVTCSVWLVLCFWPILKGMFAKGSYGLPWSTLFKSSALAFLFV 155
            G+ E    V +++ F P L G+F KG YG P STL  +  LA LFV
Sbjct: 712 SGLAEACGCVLVMMLFLPFLMGLFKKGKYGTPLSTLSIAGFLAVLFV 753

[Close]

BLAST of CmoCh02G001840 vs. NCBI nr
Match: gi|659111800|ref|XP_008455913.1| (PREDICTED: cellulose synthase-like protein H1 [Cucumis melo])

HSP 1 Score: 241.9 bits (616), Expect = 7.8e-61
Identity = 115/162 (70.99%), Postives = 134/162 (82.72%), Query Frame = 1


Query: 1   MLGYIETDQSIRAWWNNHRMDMIKSMCSCLLGVVAVLLKILGLSETTFEVTKKESASSSD 60
           +L Y ET QS+RAWWNN RM+ I+ M S LLG+VAV+LKI G+SET FE+TKKES+SSSD
Sbjct: 585 LLDYFETGQSVRAWWNNLRMEKIQKMSSSLLGIVAVILKIFGISETVFEITKKESSSSSD 644

Query: 61  DTESSDRDLGRFTFDESPMFVPITTIMMIQLAALSIGFLGTQPGRREFGVGEVTCSVWLV 120
           D +S D DLGRFTFDESP+FVP+TT++MIQL ALSIGFL TQP  REFGV EV C +W +
Sbjct: 645 DIKSGDGDLGRFTFDESPLFVPVTTVLMIQLTALSIGFLQTQPSIREFGVAEVMCCLWTI 704

Query: 121 LCFWPILKGMFAKGSYGLPWSTLFKSSALAFLFVYLCRMSTK 163
           L FW  LKGMFAKG+YGLPW TLFKSS LA LFVYLC+ +TK
Sbjct: 705 LSFWSFLKGMFAKGNYGLPWPTLFKSSVLALLFVYLCQETTK 746

[Close]

BLAST of CmoCh02G001840 vs. NCBI nr
Match: gi|659111804|ref|XP_008455915.1| (PREDICTED: cellulose synthase-like protein H1 isoform X2 [Cucumis melo])

HSP 1 Score: 231.5 bits (589), Expect = 1.1e-57
Identity = 121/164 (73.78%), Postives = 133/164 (81.10%), Query Frame = 1


Query: 1   MLGYIETDQSIRAWWNNHRMDMIKSMCSCLLGVVAVLLKILGLSETTFEVTKKESASSSD 60
           +L Y ET QS RAWWNN RM  I ++C+ LLG VAV+LK+LGLSET FEVTKKES+SSSD
Sbjct: 464 LLQYWETGQSARAWWNNERMARINTICASLLGAVAVVLKLLGLSETVFEVTKKESSSSSD 523

Query: 61  DTESS-DRDLGRFTFDESPMFVPITTIMMIQLAALSIGFLGT-QPGRREFGVGEVTCSVW 120
           D ESS D DLGRFTFDESP+FVP TTI++IQL ALSI FL   QP   EFGVGEVTCSVW
Sbjct: 524 DKESSSDGDLGRFTFDESPLFVPGTTILIIQLLALSIAFLRIRQPNVVEFGVGEVTCSVW 583

Query: 121 LVLCFWPILKGMFAKGSYGLPWSTLFKSSALAFLFVYLCRMSTK 163
           L+LCFW  LKGMFAKG YGLPWSTL KSSALAFLFV  C + TK
Sbjct: 584 LILCFWSFLKGMFAKGKYGLPWSTLCKSSALAFLFVCFCIIPTK 627

[Close]

BLAST of CmoCh02G001840 vs. NCBI nr
Match: gi|659111802|ref|XP_008455914.1| (PREDICTED: cellulose synthase-like protein H1 isoform X1 [Cucumis melo])

HSP 1 Score: 231.5 bits (589), Expect = 1.1e-57
Identity = 121/164 (73.78%), Postives = 133/164 (81.10%), Query Frame = 1


Query: 1   MLGYIETDQSIRAWWNNHRMDMIKSMCSCLLGVVAVLLKILGLSETTFEVTKKESASSSD 60
           +L Y ET QS RAWWNN RM  I ++C+ LLG VAV+LK+LGLSET FEVTKKES+SSSD
Sbjct: 581 LLQYWETGQSARAWWNNERMARINTICASLLGAVAVVLKLLGLSETVFEVTKKESSSSSD 640

Query: 61  DTESS-DRDLGRFTFDESPMFVPITTIMMIQLAALSIGFLGT-QPGRREFGVGEVTCSVW 120
           D ESS D DLGRFTFDESP+FVP TTI++IQL ALSI FL   QP   EFGVGEVTCSVW
Sbjct: 641 DKESSSDGDLGRFTFDESPLFVPGTTILIIQLLALSIAFLRIRQPNVVEFGVGEVTCSVW 700

Query: 121 LVLCFWPILKGMFAKGSYGLPWSTLFKSSALAFLFVYLCRMSTK 163
           L+LCFW  LKGMFAKG YGLPWSTL KSSALAFLFV  C + TK
Sbjct: 701 LILCFWSFLKGMFAKGKYGLPWSTLCKSSALAFLFVCFCIIPTK 744

[Close]

BLAST of CmoCh02G001840 vs. NCBI nr
Match: gi|778673431|ref|XP_011649989.1| (PREDICTED: cellulose synthase-like protein H1 [Cucumis sativus])

HSP 1 Score: 231.1 bits (588), Expect = 1.4e-57
Identity = 110/162 (67.90%), Postives = 131/162 (80.86%), Query Frame = 1


Query: 1   MLGYIETDQSIRAWWNNHRMDMIKSMCSCLLGVVAVLLKILGLSETTFEVTKKESASSSD 60
           +L + +T QS+RAWWNN RM+ I+ M S LLG+VAV+ KI G+SET FE+TKKES+SSSD
Sbjct: 585 LLDFFKTGQSVRAWWNNLRMEKIQKMSSSLLGIVAVIFKIFGISETVFEITKKESSSSSD 644

Query: 61  DTESSDRDLGRFTFDESPMFVPITTIMMIQLAALSIGFLGTQPGRREFGVGEVTCSVWLV 120
           D +S D DLGR TFDESP+FVP+TTI+MIQLAAL IGFL  Q   REFGV EV C +W +
Sbjct: 645 DIKSDDGDLGRLTFDESPLFVPVTTILMIQLAALYIGFLQMQASVREFGVAEVMCCLWTI 704

Query: 121 LCFWPILKGMFAKGSYGLPWSTLFKSSALAFLFVYLCRMSTK 163
           L FW  L+GMFAKG+YGLPW TLFKSS LAFLFVYLC+ +TK
Sbjct: 705 LSFWSFLRGMFAKGNYGLPWPTLFKSSVLAFLFVYLCQQTTK 746

[Close]

BLAST of CmoCh02G001840 vs. NCBI nr
Match: gi|778673437|ref|XP_011649991.1| (PREDICTED: cellulose synthase-like protein H1 isoform X2 [Cucumis sativus])

HSP 1 Score: 228.4 bits (581), Expect = 8.9e-57
Identity = 120/161 (74.53%), Postives = 130/161 (80.75%), Query Frame = 1


Query: 1   MLGYIETDQSIRAWWNNHRMDMIKSMCSCLLGVVAVLLKILGLSETTFEVTKKESASSSD 60
           +L Y ET QS RAWWNN RM  I ++C+ LLG VAV LK+LGLSET FEVTKKES+SSSD
Sbjct: 522 LLQYWETGQSARAWWNNERMARINTICASLLGAVAVALKLLGLSETVFEVTKKESSSSSD 581

Query: 61  DTESS-DRDLGRFTFDESPMFVPITTIMMIQLAALSIGFLGT-QPGRREFGVGEVTCSVW 120
           DTESS D DLGRFTFDESP+FVP TTI++IQL ALSI F    QP   EFGVGEVTCSVW
Sbjct: 582 DTESSSDGDLGRFTFDESPLFVPGTTILIIQLLALSIAFSRIRQPNVVEFGVGEVTCSVW 641

Query: 121 LVLCFWPILKGMFAKGSYGLPWSTLFKSSALAFLFVYLCRM 160
           L+LCFW  LKGMFAKG YGLPWSTL KSSALAFLFV  C M
Sbjct: 642 LILCFWSFLKGMFAKGKYGLPWSTLCKSSALAFLFVCFCIM 682

The following BLAST results are available for this feature:

BLAST of CmoCh02G001840 vs. Swiss-Prot


Match Name	E-value	Identity	Description
CSLH2_ORYSI	2.1e-34	45.96	Cellulose synthase-like protein H2 OS=Oryza sativa subsp. indica GN=CSLH2 PE=3 S...	[more]
CSLH2_ORYSJ	2.1e-34	45.96	Cellulose synthase-like protein H2 OS=Oryza sativa subsp. japonica GN=CSLH2 PE=3...	[more]
CSLH3_ORYSJ	2.6e-32	44.59	Putative cellulose synthase-like protein H3 OS=Oryza sativa subsp. japonica GN=C...	[more]
CSLH1_ORYSJ	2.2e-31	41.88	Cellulose synthase-like protein H1 OS=Oryza sativa subsp. japonica GN=CSLH1 PE=2...	[more]
CSLB4_ARATH	5.4e-22	41.40	Cellulose synthase-like protein B4 OS=Arabidopsis thaliana GN=CSLB4 PE=3 SV=1	[more]

BLAST of CmoCh02G001840 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LT64_CUCSA	9.6e-58	67.90	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G416170 PE=3 SV=1	[more]
A0A0A0LN39_CUCSA	6.2e-57	74.53	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G416190 PE=3 SV=1	[more]
W9R4A0_9ROSA	4.9e-46	57.76	Cellulose synthase-like protein H1 OS=Morus notabilis GN=L484_011922 PE=3 SV=1	[more]
A0A068VF86_COFCA	1.8e-43	56.52	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00008789001 PE=4 SV=1	[more]
A0A068V8L1_COFCA	2.5e-42	55.63	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00017366001 PE=4 SV=1	[more]

BLAST of CmoCh02G001840 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G32540.1	3.1e-23	41.40	cellulose synthase-like B4	[more]
AT2G32530.1	5.2e-23	40.00	cellulose synthase-like B3	[more]
AT2G32620.1	6.6e-18	37.97	cellulose synthase-like B	[more]
AT4G15290.1	1.9e-17	33.74	Cellulose synthase family protein	[more]
AT2G32610.1	3.6e-16	35.33	cellulose synthase-like B1	[more]

BLAST of CmoCh02G001840 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659111800\|ref\|XP_008455913.1\|	7.8e-61	70.99	PREDICTED: cellulose synthase-like protein H1 [Cucumis melo]	[more]
gi\|659111804\|ref\|XP_008455915.1\|	1.1e-57	73.78	PREDICTED: cellulose synthase-like protein H1 isoform X2 [Cucumis melo]	[more]
gi\|659111802\|ref\|XP_008455914.1\|	1.1e-57	73.78	PREDICTED: cellulose synthase-like protein H1 isoform X1 [Cucumis melo]	[more]
gi\|778673431\|ref\|XP_011649989.1\|	1.4e-57	67.90	PREDICTED: cellulose synthase-like protein H1 [Cucumis sativus]	[more]
gi\|778673437\|ref\|XP_011649991.1\|	8.9e-57	74.53	PREDICTED: cellulose synthase-like protein H1 isoform X2 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR005150	Cellulose_synth

Vocabulary: **Cellular Component**
Term	Definition
GO:0016020	membrane

Vocabulary: **Molecular Function**
Term	Definition
GO:0016760	cellulose synthase (UDP-forming) activity

Vocabulary: **Biological Process**
Term	Definition
GO:0030244	cellulose biosynthetic process

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030244	cellulose biosynthetic process
biological_process	GO:0005982	starch metabolic process
biological_process	GO:0005985	sucrose metabolic process
biological_process	GO:0006011	UDP-glucose metabolic process
biological_process	GO:0071555	cell wall organization
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0016020	membrane
molecular_function	GO:0016760	cellulose synthase (UDP-forming) activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh02G001840.1	CmoCh02G001840.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005150	Cellulose synthase	PFAM	PF03552	Cellulose_synt	coord: 10..155 score: 2.3
None	No IPR available	PANTHER	PTHR13301	X-BOX TRANSCRIPTION FACTOR-RELATED	coord: 1..162 score: 2.0
None	No IPR available	PANTHER	PTHR13301:SF53	CELLULOSE SYNTHASE-LIKE PROTEIN B1-RELATED	coord: 1..162 score: 2.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh02G001840	Csa2G416260	Cucumber (Chinese Long) v2	cmocuB578
CmoCh02G001840	MELO3C019296	Melon (DHL92) v3.5.1	cmomeB523
CmoCh02G001840	CsGy7G003220	Cucumber (Gy14) v2	cgybcmoB943

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh02G001840	Cucurbita pepo (Zucchini)	cmocpeB565
CmoCh02G001840	Cucurbita pepo (Zucchini)	cmocpeB577
CmoCh02G001840	Cucurbita pepo (Zucchini)	cmocpeB592
CmoCh02G001840	Cucurbita pepo (Zucchini)	cmocpeB595
CmoCh02G001840	Bottle gourd (USVL1VR-Ls)	cmolsiB534
CmoCh02G001840	Bottle gourd (USVL1VR-Ls)	cmolsiB544
CmoCh02G001840	Cucumber (Gy14) v2	cgybcmoB221
CmoCh02G001840	Melon (DHL92) v3.6.1	cmomedB601
CmoCh02G001840	Melon (DHL92) v3.6.1	cmomedB630
CmoCh02G001840	Silver-seed gourd	carcmoB0044
CmoCh02G001840	Silver-seed gourd	carcmoB0468
CmoCh02G001840	Silver-seed gourd	carcmoB1185
CmoCh02G001840	Cucumber (Chinese Long) v3	cmocucB0688
CmoCh02G001840	Cucumber (Chinese Long) v3	cmocucB0754
CmoCh02G001840	Watermelon (97103) v2	cmowmbB589
CmoCh02G001840	Watermelon (97103) v2	cmowmbB593
CmoCh02G001840	Wax gourd	cmowgoB0727
CmoCh02G001840	Wax gourd	cmowgoB0748
CmoCh02G001840	Wax gourd	cmowgoB0757
CmoCh02G001840	Cucurbita moschata (Rifu)	cmocmoB121
CmoCh02G001840	Cucurbita moschata (Rifu)	cmocmoB389
CmoCh02G001840	Cucurbita moschata (Rifu)	cmocmoB406
CmoCh02G001840	Cucumber (Gy14) v1	cgycmoB0409
CmoCh02G001840	Cucumber (Gy14) v1	cgycmoB0851
CmoCh02G001840	Cucurbita maxima (Rimu)	cmacmoB154
CmoCh02G001840	Cucurbita maxima (Rimu)	cmacmoB524
CmoCh02G001840	Cucurbita maxima (Rimu)	cmacmoB561
CmoCh02G001840	Cucurbita maxima (Rimu)	cmacmoB619
CmoCh02G001840	Wild cucumber (PI 183967)	cmocpiB583
CmoCh02G001840	Wild cucumber (PI 183967)	cmocpiB643
CmoCh02G001840	Cucumber (Chinese Long) v2	cmocuB632
CmoCh02G001840	Melon (DHL92) v3.5.1	cmomeB553
CmoCh02G001840	Watermelon (Charleston Gray)	cmowcgB526
CmoCh02G001840	Watermelon (Charleston Gray)	cmowcgB529
CmoCh02G001840	Watermelon (97103) v1	cmowmB587
CmoCh02G001840	Watermelon (97103) v1	cmowmB590