CmoCh02G000610 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh02G000610
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
Description(E3 ubiquitin-protein ligase COP1) (6.3.2.19)
LocationCmo_Chr02 : 320795 .. 324045 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGCTATGGATGGCTGGAGATGATATGAAAGCTATAGAACCTTGGTCATCATTAATGGATAAGAGAAATGATGGGCCTACCTTTACATCTCTGAACACCGGGGGTGTTGTGTCCTCTGGGAATTCTCAAATTAAGAAAGCAGATTCAAGGAGTCAAGTCAGCACTTATGGTAACTGGCCGGAAAGAATCCAAAGGAAGCTCTAAAAGGGAGAGCTGCTCAACTTTCAAAAGGGAAAAACTAACGTTTTCCTATAAGACGTTTTCTCAAGTACACCTGCTCTCTTCATTTCACCCTTTTAGAATAGCCTACGAGATTGAAAAGGTTTCCAGAAATTTCTTTTGGGAAGACAGTATGGAGGTAAAGGAAAACATCTTGTAAATTTGTGAAGCCGTTTCTCCCCTTCCTATTAAATCAGGCCTGGAAGTGGCGGAGGAGTAAGGCTATGGTCTCGTAATGAATGGAGGCTTCTAACGGGAGACTTGTTCACTTTAACACCAGTCAATTAATAGCTAATTGCTAGTGAATGTGGTCCTTCTCCTGGGCGTTGGACAACCATATTCAAGGCCCCAGGCTAAAATGTCCTGGGATTTTTATAAGGAGGAATAGGTTCGTACCTTTAGACGCCATACAAATGGAAAAAACTTTGTTGGTCTGACAGTAAATAGCCAATACATTGCTTGCGGCAGTGAAACAAACGAAGTCTTCGTCTACCACAAGGTTATTTATATTCAAAACCGTGGCTCTCCATTCTTTATCTTAGAACTTAACACAAGTTTTGCTTCTTGTCTCAGGAAATCTCCAGACAGCTGACTTCGCATCAATTTGGTTCACCTGATGCAGGTGATGTGGAGGATGATGCGGGATCTAATTTCATCAGTGCTGTTTGCTGGGAGAGTGATAGTCCTACTATCCTCAGTGCCAACAGCCAGGGAACAATTAAGGTGCTGGTTCTTGCGGTTTAATTAGTAATTTAACCATTTTAGAATAGAAATTATGTAGGGATGCGTCTTTAGCTCAAATATATGTAAGTAATGCTCACGATTGTGCATGTGGTAGGGAAATACAACACAGATGGGTCTTTTTTAGTTAAGGTTACGTGTACCCATCAGGGGGGTATTTTATACCTAGCTCTTGGTGATCATATATGATGAAGATTGTTGGGAGGGAGTCCCACGTTGACTAATTTAGAGGAGGATCATGGGTTTATAAGTAAGGAATACATCCCCATTGGTATGAGGCCTTTTGGAAAAACCAAAAGCAAAGCCACGAGGGCTTATACTCTAAGTGGACAATATCATACCATTGTGAAAATCCGTGATTCCTAACCATCTATTCCTCTATCCACACCCTATTCATTATAGTCATTTATGTCCTTGAACCAATCATTTTCTGGAAGCTTGGATTGTGTTCTTTAAATTGGTTACATTGAACTAGTGAATAGAATGCCTTTGTCTGTCACGAGCCTTGTGATAGCATCTTCACTTGTGTACGAGTCTAACTTTGAAGTGAAAGACAGTGGAGTAAATGGGGTGGTTTCTGAAGAGTGAGCTGTGAGGCAGTAAGAGGAAGGGCTGACTAATGCATCATCCAAGTATTTGATTTCAATCTTGTTAACATAAACTTAACTTTGGACGATACTTCACTCTAAAATGTAGGAAATTCTTGATCCTGTTTCTGTTTAGAATCATCTTGATAGTTACTACAACAAATTAGTCTCCAAAAACTTTGTACATTCGGCTTCTGCAGTTTCATGTTGAAATTCTCATCTCACTGTCAACTTTTCCCTCCCATTTCGCTTGTAGAAAAGAAAAATTAGGTATTCAATATTGGGATTCAGCAGGAGCGCCAACACAGATATGTCTCAGCCTGCTTTTGACTAGAGGCAATAAAGTTTGTTGGATGACCCATCCTAGATCTTTTTGGTTAATTTTGGTCTAAAGTTTTGAGGACAATAAATATCGAATATCCCTATAGTACCAAAGACTGGTTTGAAGGCGACCTTTATTATGATTATTTTTTTTTTTACCTTCATGCTTAGTTGAGTACTGACTTCTGCTGCTTTACTTGACCTATTCATTTCAATTATTGATGCTTGCTTTAACTTCCTTGACCAACTGCCAACTGCCTGCCTTTTTACATAACGATGCTAATCATGCTCTGTCAGCAACTTCTTTCTTTCATGTCATTTCATACCTTAATCCTTTTCAATTTGATCGTCCTCAAAAAATCGCCTCTTGGAGGCGGTTTGCAGCTGAGGAGAACACTTTTTTTATTATGTTCGTAGTATAGAAGAATAGTTCTATACTACTGTTTTCTTTTTTTTTTTTTTTTTTTTTTAACTGTACCATTATTTATTTCACTGTTTTATTCCCTACTCTACCATTCCTGTAGTATTGAAGTTATTTATTTATTCTTATCTTTACTGGCTCGAAGTTTGGATATGAGACTGGCCTAAAGTGTCTCGAATTCGAACCTCTTGGTGAAATGCTTAATATGTTATGTGCTATATGAATGAGATAGAGATTTAGTTCGGATCAGTTTGTGTTTTGTTTTTGAACTTCGTAGTAGTATAATAAGTAAGTTTTTATGAATGTAAGCTTATGCTTTCTATTTCTCAACTTCAGGTTATACAAGCTTAACTTATGAATCGAATATCATTTGTTATCTCGTGAAATCAGCATTGTGGGCTTGGATAACTACATGTGTTCATATTACCTGAACAACTCGGACTATTCAATAACCATTATAAGAGGTACGGATTACATCCCTCTACGATTCATCCCCTCCCTATGCTGCCAAAAAGAAAAGAATATAATAATGAATTAATGAGCAATGGAAAGGAATAGAGGAAGAAAACAGAAAAGCTTTCTTTATTGCCTGTGAAGATTGTCAATAAAAATAAAAAATGGGAATAGGTATATGTACTTGGCACAAGCGTAGGGGACGGGGTGCTTGGTAAAACAAGATTCCCCATAAAGAAATAGAGAAACCGAGAGTTCCTCAAATGGTCAAAATTCAAACCTCTTCCTTCCCTTATTATGAGAGCCCGTAATAAACTTTCAACGACATTCAACCAATATGGAAGCTCATCATATGATTTCGCATCCACGTGTTTGTGTCATCTTTAGTGGCAAACGGTAACTATATTGGGCACAATTTATTTAGTTATTCTTACACATAGTACATGAGTTACATTAATTATGGTATACGGTTACACTATTTTTCTCAATGCTTTTTGACATTACCC

mRNA sequence

ATGAAGCTATGGATGGCTGGAGATGATATGAAAGCTATAGAACCTTGGTCATCATTAATGGATAAGAGAAATGATGGGCCTACCTTTACATCTCTGAACACCGGGGGTGTTGTGTCCTCTGGGAATTCTCAAATTAAGAAAGCAGATTCAAGGAGTCAAGTCAGCACTTATGTAAATAGCCAATACATTGCTTGCGGCAGTGAAACAAACGAAGTCTTCGTCTACCACAAGGAAATCTCCAGACAGCTGACTTCGCATCAATTTGGTTCACCTGATGCAGGTGATGTGGAGGATGATGCGGGATCTAATTTCATCAGTGCTGTTTGCTGGGAGAGTGATAGTCCTACTATCCTCAGTGCCAACAGCCAGGGAACAATTAAGGTTATACAAGCTTAACTTATGAATCGAATATCATTTGTTATCTCGTGAAATCAGCATTGTGGGCTTGGATAACTACATGTGTTCATATTACCTGAACAACTCGGACTATTCAATAACCATTATAAGAGGTACGGATTACATCCCTCTACGATTCATCCCCTCCCTATGCTGCCAAAAAGAAAAGAATATAATAATGAATTAATGAGCAATGGAAAGGAATAGAGGAAGAAAACAGAAAAGCTTTCTTTATTGCCTGTGAAGATTGTCAATAAAAATAAAAAATGGGAATAGGTATATGTACTTGGCACAAGCGTAGGGGACGGGGTGCTTGGTAAAACAAGATTCCCCATAAAGAAATAGAGAAACCGAGAGTTCCTCAAATGGTCAAAATTCAAACCTCTTCCTTCCCTTATTATGAGAGCCCGTAATAAACTTTCAACGACATTCAACCAATATGGAAGCTCATCATATGATTTCGCATCCACGTGTTTGTGTCATCTTTAGTGGCAAACGGTAACTATATTGGGCACAATTTATTTAGTTATTCTTACACATAGTACATGAGTTACATTAATTATGGTATACGGTTACACTATTTTTCTCAATGCTTTTTGACATTACCC

Coding sequence (CDS)

ATGAAGCTATGGATGGCTGGAGATGATATGAAAGCTATAGAACCTTGGTCATCATTAATGGATAAGAGAAATGATGGGCCTACCTTTACATCTCTGAACACCGGGGGTGTTGTGTCCTCTGGGAATTCTCAAATTAAGAAAGCAGATTCAAGGAGTCAAGTCAGCACTTATGTAAATAGCCAATACATTGCTTGCGGCAGTGAAACAAACGAAGTCTTCGTCTACCACAAGGAAATCTCCAGACAGCTGACTTCGCATCAATTTGGTTCACCTGATGCAGGTGATGTGGAGGATGATGCGGGATCTAATTTCATCAGTGCTGTTTGCTGGGAGAGTGATAGTCCTACTATCCTCAGTGCCAACAGCCAGGGAACAATTAAGGTTATACAAGCTTAA
Homology
[Close]
BLAST of CmoCh02G000610 vs. Swiss-Prot
Match: COP1_ARATH (E3 ubiquitin-protein ligase COP1 OS=Arabidopsis thaliana GN=COP1 PE=1 SV=2)

HSP 1 Score: 121.7 bits (304), Expect = 5.9e-27
Identity = 56/81 (69.14%), Postives = 71/81 (87.65%), Query Frame = 1 

Query: 49  DSRSQVSTYVNSQYIACGSETNEVFVYHKEISRQLTSHQFGSPDAGDVEDDAGSNFISAV 108
           + ++ V   VNS+Y+ACGSETNEV+VYHKEI+R +TSH+FGSPD  D E++AGS FISAV
Sbjct: 591 NEKNFVGLTVNSEYLACGSETNEVYVYHKEITRPVTSHRFGSPDMDDAEEEAGSYFISAV 650

Query: 109 CWESDSPTILSANSQGTIKVI 130
           CW+SDSPT+L+ANSQGTIKV+
Sbjct: 651 CWKSDSPTMLTANSQGTIKVL 671

[Close]
BLAST of CmoCh02G000610 vs. Swiss-Prot
Match: COP1_PEA (E3 ubiquitin-protein ligase COP1 OS=Pisum sativum GN=COP1 PE=2 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 1.9e-25
Identity = 57/82 (69.51%), Postives = 68/82 (82.93%), Query Frame = 1 

Query: 48  ADSRSQVSTYVNSQYIACGSETNEVFVYHKEISRQLTSHQFGSPDAGDVEDDAGSNFISA 107
           A+ ++ V   V S+YIACGSETNEVFVYHKEIS+ LT H+FG+ D  D ED+AGS FISA
Sbjct: 587 ANEKNFVGLTVRSEYIACGSETNEVFVYHKEISKPLTWHRFGTLDMEDAEDEAGSYFISA 646

Query: 108 VCWESDSPTILSANSQGTIKVI 130
           VCW+SD PTIL+ANSQGTIKV+
Sbjct: 647 VCWKSDRPTILTANSQGTIKVL 668

[Close]
BLAST of CmoCh02G000610 vs. Swiss-Prot
Match: SPA3_ARATH (Protein SPA1-RELATED 3 OS=Arabidopsis thaliana GN=SPA3 PE=1 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 2.4e-12
Identity = 36/78 (46.15%), Postives = 50/78 (64.10%), Query Frame = 1 

Query: 54  VSTYVNSQYIACGSETNEVFVYHKEISRQLTSHQFGSPDA-GDVEDDAGSNFISAVCWES 113
           V   V+  YIA GSETNEVFVYHK     + S+ F + D+   +E D  S FIS++CW  
Sbjct: 765 VGLSVSDGYIATGSETNEVFVYHKAFPMPVMSYMFNNTDSMSGLEVDDASQFISSICWRG 824

Query: 114 DSPTILSANSQGTIKVIQ 131
            S T+++ANS G IK+++
Sbjct: 825 QSSTLVAANSNGNIKILE 842

[Close]
BLAST of CmoCh02G000610 vs. Swiss-Prot
Match: SPA2_ARATH (Protein SPA1-RELATED 2 OS=Arabidopsis thaliana GN=SPA2 PE=1 SV=2)

HSP 1 Score: 72.8 bits (177), Expect = 3.2e-12
Identity = 35/84 (41.67%), Postives = 56/84 (66.67%), Query Frame = 1 

Query: 49   DSRSQVSTYVNSQYIACGSETNEVFVYHKEISRQLTSHQFGS--PDAGDVEDDAGSNFIS 108
            + ++ V    +  YIACGSETNEV+ YH+ +   +TS++FGS  P +G   ++  + F+S
Sbjct: 951  NEKNFVGLSTSDGYIACGSETNEVYAYHRSLPMPITSYKFGSIDPISGKEIEEDNNLFVS 1010

Query: 109  AVCWESDSPTILSANSQGTIKVIQ 131
            +VCW   S  ++SA+S G+IKV+Q
Sbjct: 1011 SVCWRKRSNMVVSASSNGSIKVLQ 1034

[Close]
BLAST of CmoCh02G000610 vs. Swiss-Prot
Match: SPA4_ARATH (Protein SPA1-RELATED 4 OS=Arabidopsis thaliana GN=SPA4 PE=1 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 3.2e-12
Identity = 37/78 (47.44%), Postives = 51/78 (65.38%), Query Frame = 1 

Query: 54  VSTYVNSQYIACGSETNEVFVYHKEISRQLTSHQFGSPD-AGDVEDDAGSNFISAVCWES 113
           V   V+  YIA GSETNEVFVYHK     + S++F + D   ++E D  S FIS+VCW  
Sbjct: 715 VGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSELEVDDASQFISSVCWRG 774

Query: 114 DSPTILSANSQGTIKVIQ 131
            S T+++ANS G IK+++
Sbjct: 775 QSSTLVAANSTGNIKILE 792

[Close]
BLAST of CmoCh02G000610 vs. TrEMBL
Match: I1JII3_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_02G267800 PE=4 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 2.7e-26
Identity = 61/82 (74.39%), Postives = 71/82 (86.59%), Query Frame = 1 

Query: 48  ADSRSQVSTYVNSQYIACGSETNEVFVYHKEISRQLTSHQFGSPDAGDVEDDAGSNFISA 107
           A+ ++ V   V+S+YIACGSETNEVFVYHKEISR LTSH+FGSPD  D ED+AGS FISA
Sbjct: 438 ANEKNFVGLTVSSEYIACGSETNEVFVYHKEISRPLTSHRFGSPDMDDAEDEAGSYFISA 497

Query: 108 VCWESDSPTILSANSQGTIKVI 130
           VCW+SD PTIL+ANSQGTIKV+
Sbjct: 498 VCWKSDRPTILTANSQGTIKVL 519

[Close]
BLAST of CmoCh02G000610 vs. TrEMBL
Match: A0A0B2S2X0_GLYSO (E3 ubiquitin-protein ligase COP1 OS=Glycine soja GN=glysoja_004162 PE=4 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 2.7e-26
Identity = 61/82 (74.39%), Postives = 71/82 (86.59%), Query Frame = 1 

Query: 48  ADSRSQVSTYVNSQYIACGSETNEVFVYHKEISRQLTSHQFGSPDAGDVEDDAGSNFISA 107
           A+ ++ V   V+S+YIACGSETNEVFVYHKEISR LTSH+FGSPD  D ED+AGS FISA
Sbjct: 584 ANEKNFVGLTVSSEYIACGSETNEVFVYHKEISRPLTSHRFGSPDMDDAEDEAGSYFISA 643

Query: 108 VCWESDSPTILSANSQGTIKVI 130
           VCW+SD PTIL+ANSQGTIKV+
Sbjct: 644 VCWKSDRPTILTANSQGTIKVL 665

[Close]
BLAST of CmoCh02G000610 vs. TrEMBL
Match: A0A0A0KBG5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G161200 PE=4 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 2.7e-26
Identity = 61/81 (75.31%), Postives = 70/81 (86.42%), Query Frame = 1 

Query: 49  DSRSQVSTYVNSQYIACGSETNEVFVYHKEISRQLTSHQFGSPDAGDVEDDAGSNFISAV 108
           + ++ V   VN++YIACGSETNEVFVYHKEISR LT H+FGSPD  DVEDD GS FISAV
Sbjct: 591 NEKNFVGLTVNNEYIACGSETNEVFVYHKEISRPLTWHRFGSPDVTDVEDDVGSYFISAV 650

Query: 109 CWESDSPTILSANSQGTIKVI 130
           CW+SDSPTIL+ANSQGTIKV+
Sbjct: 651 CWKSDSPTILTANSQGTIKVL 671

[Close]
BLAST of CmoCh02G000610 vs. TrEMBL
Match: I1JII2_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_02G267800 PE=4 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 2.7e-26
Identity = 61/82 (74.39%), Postives = 71/82 (86.59%), Query Frame = 1 

Query: 48  ADSRSQVSTYVNSQYIACGSETNEVFVYHKEISRQLTSHQFGSPDAGDVEDDAGSNFISA 107
           A+ ++ V   V+S+YIACGSETNEVFVYHKEISR LTSH+FGSPD  D ED+AGS FISA
Sbjct: 584 ANEKNFVGLTVSSEYIACGSETNEVFVYHKEISRPLTSHRFGSPDMDDAEDEAGSYFISA 643

Query: 108 VCWESDSPTILSANSQGTIKVI 130
           VCW+SD PTIL+ANSQGTIKV+
Sbjct: 644 VCWKSDRPTILTANSQGTIKVL 665

[Close]
BLAST of CmoCh02G000610 vs. TrEMBL
Match: A0A0B2SKF0_GLYSO (E3 ubiquitin-protein ligase COP1 OS=Glycine soja GN=glysoja_032093 PE=4 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 1.0e-25
Identity = 60/82 (73.17%), Postives = 70/82 (85.37%), Query Frame = 1 

Query: 48  ADSRSQVSTYVNSQYIACGSETNEVFVYHKEISRQLTSHQFGSPDAGDVEDDAGSNFISA 107
           A+ ++ V   V+S+YIACGSETNEVFVYHKEISR LT H+FGSPD  D ED+AGS FISA
Sbjct: 583 ANEKNFVGLTVSSEYIACGSETNEVFVYHKEISRPLTCHRFGSPDMDDAEDEAGSYFISA 642

Query: 108 VCWESDSPTILSANSQGTIKVI 130
           VCW+SD PTIL+ANSQGTIKV+
Sbjct: 643 VCWKSDRPTILTANSQGTIKVL 664

[Close]
BLAST of CmoCh02G000610 vs. TAIR10
Match: AT2G32950.1 (AT2G32950.1 Transducin/WD40 repeat-like superfamily protein)

HSP 1 Score: 121.7 bits (304), Expect = 3.3e-28
Identity = 56/81 (69.14%), Postives = 71/81 (87.65%), Query Frame = 1 

Query: 49  DSRSQVSTYVNSQYIACGSETNEVFVYHKEISRQLTSHQFGSPDAGDVEDDAGSNFISAV 108
           + ++ V   VNS+Y+ACGSETNEV+VYHKEI+R +TSH+FGSPD  D E++AGS FISAV
Sbjct: 591 NEKNFVGLTVNSEYLACGSETNEVYVYHKEITRPVTSHRFGSPDMDDAEEEAGSYFISAV 650

Query: 109 CWESDSPTILSANSQGTIKVI 130
           CW+SDSPT+L+ANSQGTIKV+
Sbjct: 651 CWKSDSPTMLTANSQGTIKVL 671

[Close]
BLAST of CmoCh02G000610 vs. TAIR10
Match: AT3G15354.1 (AT3G15354.1 SPA1-related 3)

HSP 1 Score: 73.2 bits (178), Expect = 1.4e-13
Identity = 36/78 (46.15%), Postives = 50/78 (64.10%), Query Frame = 1 

Query: 54  VSTYVNSQYIACGSETNEVFVYHKEISRQLTSHQFGSPDA-GDVEDDAGSNFISAVCWES 113
           V   V+  YIA GSETNEVFVYHK     + S+ F + D+   +E D  S FIS++CW  
Sbjct: 757 VGLSVSDGYIATGSETNEVFVYHKAFPMPVMSYMFNNTDSMSGLEVDDASQFISSICWRG 816

Query: 114 DSPTILSANSQGTIKVIQ 131
            S T+++ANS G IK+++
Sbjct: 817 QSSTLVAANSNGNIKILE 834

[Close]
BLAST of CmoCh02G000610 vs. TAIR10
Match: AT4G11110.1 (AT4G11110.1 SPA1-related 2)

HSP 1 Score: 72.8 bits (177), Expect = 1.8e-13
Identity = 35/84 (41.67%), Postives = 56/84 (66.67%), Query Frame = 1 

Query: 49   DSRSQVSTYVNSQYIACGSETNEVFVYHKEISRQLTSHQFGS--PDAGDVEDDAGSNFIS 108
            + ++ V    +  YIACGSETNEV+ YH+ +   +TS++FGS  P +G   ++  + F+S
Sbjct: 951  NEKNFVGLSTSDGYIACGSETNEVYAYHRSLPMPITSYKFGSIDPISGKEIEEDNNLFVS 1010

Query: 109  AVCWESDSPTILSANSQGTIKVIQ 131
            +VCW   S  ++SA+S G+IKV+Q
Sbjct: 1011 SVCWRKRSNMVVSASSNGSIKVLQ 1034

[Close]
BLAST of CmoCh02G000610 vs. TAIR10
Match: AT1G53090.1 (AT1G53090.1 SPA1-related 4)

HSP 1 Score: 72.8 bits (177), Expect = 1.8e-13
Identity = 37/78 (47.44%), Postives = 51/78 (65.38%), Query Frame = 1 

Query: 54  VSTYVNSQYIACGSETNEVFVYHKEISRQLTSHQFGSPD-AGDVEDDAGSNFISAVCWES 113
           V   V+  YIA GSETNEVFVYHK     + S++F + D   ++E D  S FIS+VCW  
Sbjct: 715 VGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSELEVDDASQFISSVCWRG 774

Query: 114 DSPTILSANSQGTIKVIQ 131
            S T+++ANS G IK+++
Sbjct: 775 QSSTLVAANSTGNIKILE 792

[Close]
BLAST of CmoCh02G000610 vs. TAIR10
Match: AT2G46340.1 (AT2G46340.1 SPA (suppressor of phyA-105) protein family)

HSP 1 Score: 68.6 bits (166), Expect = 3.4e-12
Identity = 34/84 (40.48%), Postives = 54/84 (64.29%), Query Frame = 1 

Query: 49   DSRSQVSTYVNSQYIACGSETNEVFVYHKEISRQLTSHQFGS--PDAGDVEDDAGSNFIS 108
            + ++ V   V   YIACGSETNEV+ Y+K +   +TS++FGS  P +G+   D    F+S
Sbjct: 944  NQKNFVGLSVLDGYIACGSETNEVYSYYKSLPMPMTSYKFGSVDPISGNEYFDDNGQFVS 1003

Query: 109  AVCWESDSPTILSANSQGTIKVIQ 131
            +VCW   S  +++ANS G +K+++
Sbjct: 1004 SVCWRKKSNMLVAANSTGNMKLLK 1027

[Close]
BLAST of CmoCh02G000610 vs. NCBI nr
Match: gi|659113018|ref|XP_008456402.1| (PREDICTED: E3 ubiquitin-protein ligase COP1 isoform X1 [Cucumis melo])

HSP 1 Score: 127.1 bits (318), Expect = 2.3e-26
Identity = 61/81 (75.31%), Postives = 70/81 (86.42%), Query Frame = 1 

Query: 49  DSRSQVSTYVNSQYIACGSETNEVFVYHKEISRQLTSHQFGSPDAGDVEDDAGSNFISAV 108
           + ++ V   VN++YIACGSETNEVFVYHKEISR LT H+FGSPD  DVEDD GS FISAV
Sbjct: 591 NEKNFVGLTVNNEYIACGSETNEVFVYHKEISRPLTWHRFGSPDVADVEDDVGSYFISAV 650

Query: 109 CWESDSPTILSANSQGTIKVI 130
           CW+SDSPTIL+ANSQGTIKV+
Sbjct: 651 CWKSDSPTILTANSQGTIKVL 671

[Close]
BLAST of CmoCh02G000610 vs. NCBI nr
Match: gi|659113020|ref|XP_008456403.1| (PREDICTED: E3 ubiquitin-protein ligase COP1 isoform X2 [Cucumis melo])

HSP 1 Score: 127.1 bits (318), Expect = 2.3e-26
Identity = 61/81 (75.31%), Postives = 70/81 (86.42%), Query Frame = 1 

Query: 49  DSRSQVSTYVNSQYIACGSETNEVFVYHKEISRQLTSHQFGSPDAGDVEDDAGSNFISAV 108
           + ++ V   VN++YIACGSETNEVFVYHKEISR LT H+FGSPD  DVEDD GS FISAV
Sbjct: 556 NEKNFVGLTVNNEYIACGSETNEVFVYHKEISRPLTWHRFGSPDVADVEDDVGSYFISAV 615

Query: 109 CWESDSPTILSANSQGTIKVI 130
           CW+SDSPTIL+ANSQGTIKV+
Sbjct: 616 CWKSDSPTILTANSQGTIKVL 636

[Close]
BLAST of CmoCh02G000610 vs. NCBI nr
Match: gi|449450966|ref|XP_004143233.1| (PREDICTED: E3 ubiquitin-protein ligase COP1 isoform X1 [Cucumis sativus])

HSP 1 Score: 126.3 bits (316), Expect = 3.9e-26
Identity = 61/81 (75.31%), Postives = 70/81 (86.42%), Query Frame = 1 

Query: 49  DSRSQVSTYVNSQYIACGSETNEVFVYHKEISRQLTSHQFGSPDAGDVEDDAGSNFISAV 108
           + ++ V   VN++YIACGSETNEVFVYHKEISR LT H+FGSPD  DVEDD GS FISAV
Sbjct: 591 NEKNFVGLTVNNEYIACGSETNEVFVYHKEISRPLTWHRFGSPDVTDVEDDVGSYFISAV 650

Query: 109 CWESDSPTILSANSQGTIKVI 130
           CW+SDSPTIL+ANSQGTIKV+
Sbjct: 651 CWKSDSPTILTANSQGTIKVL 671

[Close]
BLAST of CmoCh02G000610 vs. NCBI nr
Match: gi|947125136|gb|KRH73342.1| (hypothetical protein GLYMA_02G267800 [Glycine max])

HSP 1 Score: 126.3 bits (316), Expect = 3.9e-26
Identity = 61/82 (74.39%), Postives = 71/82 (86.59%), Query Frame = 1 

Query: 48  ADSRSQVSTYVNSQYIACGSETNEVFVYHKEISRQLTSHQFGSPDAGDVEDDAGSNFISA 107
           A+ ++ V   V+S+YIACGSETNEVFVYHKEISR LTSH+FGSPD  D ED+AGS FISA
Sbjct: 438 ANEKNFVGLTVSSEYIACGSETNEVFVYHKEISRPLTSHRFGSPDMDDAEDEAGSYFISA 497

Query: 108 VCWESDSPTILSANSQGTIKVI 130
           VCW+SD PTIL+ANSQGTIKV+
Sbjct: 498 VCWKSDRPTILTANSQGTIKVL 519

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BLAST of CmoCh02G000610 vs. NCBI nr
Match: gi|778713689|ref|XP_011657094.1| (PREDICTED: E3 ubiquitin-protein ligase COP1 isoform X2 [Cucumis sativus])

HSP 1 Score: 126.3 bits (316), Expect = 3.9e-26
Identity = 61/81 (75.31%), Postives = 70/81 (86.42%), Query Frame = 1 

Query: 49  DSRSQVSTYVNSQYIACGSETNEVFVYHKEISRQLTSHQFGSPDAGDVEDDAGSNFISAV 108
           + ++ V   VN++YIACGSETNEVFVYHKEISR LT H+FGSPD  DVEDD GS FISAV
Sbjct: 446 NEKNFVGLTVNNEYIACGSETNEVFVYHKEISRPLTWHRFGSPDVTDVEDDVGSYFISAV 505

Query: 109 CWESDSPTILSANSQGTIKVI 130
           CW+SDSPTIL+ANSQGTIKV+
Sbjct: 506 CWKSDSPTILTANSQGTIKVL 526

The following BLAST results are available for this feature:
BLAST of CmoCh02G000610 vs. Swiss-Prot
Match NameE-valueIdentityDescription
COP1_ARATH5.9e-2769.14E3 ubiquitin-protein ligase COP1 OS=Arabidopsis thaliana GN=COP1 PE=1 SV=2[more]
COP1_PEA1.9e-2569.51E3 ubiquitin-protein ligase COP1 OS=Pisum sativum GN=COP1 PE=2 SV=1[more]
SPA3_ARATH2.4e-1246.15Protein SPA1-RELATED 3 OS=Arabidopsis thaliana GN=SPA3 PE=1 SV=1[more]
SPA2_ARATH3.2e-1241.67Protein SPA1-RELATED 2 OS=Arabidopsis thaliana GN=SPA2 PE=1 SV=2[more]
SPA4_ARATH3.2e-1247.44Protein SPA1-RELATED 4 OS=Arabidopsis thaliana GN=SPA4 PE=1 SV=1[more]
BLAST of CmoCh02G000610 vs. TrEMBL
Match NameE-valueIdentityDescription
I1JII3_SOYBN2.7e-2674.39Uncharacterized protein OS=Glycine max GN=GLYMA_02G267800 PE=4 SV=1[more]
A0A0B2S2X0_GLYSO2.7e-2674.39E3 ubiquitin-protein ligase COP1 OS=Glycine soja GN=glysoja_004162 PE=4 SV=1[more]
A0A0A0KBG5_CUCSA2.7e-2675.31Uncharacterized protein OS=Cucumis sativus GN=Csa_6G161200 PE=4 SV=1[more]
I1JII2_SOYBN2.7e-2674.39Uncharacterized protein OS=Glycine max GN=GLYMA_02G267800 PE=4 SV=1[more]
A0A0B2SKF0_GLYSO1.0e-2573.17E3 ubiquitin-protein ligase COP1 OS=Glycine soja GN=glysoja_032093 PE=4 SV=1[more]
BLAST of CmoCh02G000610 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G32950.13.3e-2869.14 Transducin/WD40 repeat-like superfamily protein[more]
AT3G15354.11.4e-1346.15 SPA1-related 3[more]
AT4G11110.11.8e-1341.67 SPA1-related 2[more]
AT1G53090.11.8e-1347.44 SPA1-related 4[more]
AT2G46340.13.4e-1240.48 SPA (suppressor of phyA-105) protein family[more]
BLAST of CmoCh02G000610 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659113018|ref|XP_008456402.1|2.3e-2675.31PREDICTED: E3 ubiquitin-protein ligase COP1 isoform X1 [Cucumis melo][more]
gi|659113020|ref|XP_008456403.1|2.3e-2675.31PREDICTED: E3 ubiquitin-protein ligase COP1 isoform X2 [Cucumis melo][more]
gi|449450966|ref|XP_004143233.1|3.9e-2675.31PREDICTED: E3 ubiquitin-protein ligase COP1 isoform X1 [Cucumis sativus][more]
gi|947125136|gb|KRH73342.1|3.9e-2674.39hypothetical protein GLYMA_02G267800 [Glycine max][more]
gi|778713689|ref|XP_011657094.1|3.9e-2675.31PREDICTED: E3 ubiquitin-protein ligase COP1 isoform X2 [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR015943WD40/YVTN_repeat-like_dom_sf
IPR017986WD40_repeat_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0044763 single-organism cellular process
biological_process GO:0009647 skotomorphogenesis
biological_process GO:0009641 shade avoidance
biological_process GO:0010119 regulation of stomatal movement
biological_process GO:0048573 photoperiodism, flowering
biological_process GO:0010100 negative regulation of photomorphogenesis
biological_process GO:0009649 entrainment of circadian clock
biological_process GO:0006281 DNA repair
biological_process GO:0046283 anthocyanin-containing compound metabolic process
biological_process GO:0016567 protein ubiquitination
biological_process GO:0044710 single-organism metabolic process
biological_process GO:0008150 biological_process
biological_process GO:0048608 reproductive structure development
biological_process GO:0050789 regulation of biological process
biological_process GO:0044238 primary metabolic process
biological_process GO:0009640 photomorphogenesis
biological_process GO:0044260 cellular macromolecule metabolic process
cellular_component GO:0000152 nuclear ubiquitin ligase complex
cellular_component GO:0016604 nuclear body
cellular_component GO:0080008 Cul4-RING E3 ubiquitin ligase complex
cellular_component GO:0005575 cellular_component
cellular_component GO:0000151 ubiquitin ligase complex
cellular_component GO:0044428 nuclear part
molecular_function GO:0016874 ligase activity
molecular_function GO:0032440 2-alkenal reductase [NAD(P)] activity
molecular_function GO:0004842 ubiquitin-protein transferase activity
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0016491 oxidoreductase activity
molecular_function GO:0042802 identical protein binding
molecular_function GO:0061630 ubiquitin protein ligase activity
molecular_function GO:0005515 protein binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh02G000610.1CmoCh02G000610.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR015943WD40/YVTN repeat-like-containing domainGENE3DG3DSA:2.130.10.10coord: 52..128
score: 2.
IPR017986WD40-repeat-containing domainunknownSSF50978WD40 repeat-likecoord: 49..129
score: 6.1
NoneNo IPR availablePANTHERPTHR22847WD40 REPEAT PROTEINcoord: 62..130
score: 3.0
NoneNo IPR availablePANTHERPTHR22847:SF443PROTEIN SPA1-RELATED 2coord: 62..130
score: 3.0

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh02G000610CmaCh02G000630Cucurbita maxima (Rimu)cmacmoB619
CmoCh02G000610Lsi10G015680Bottle gourd (USVL1VR-Ls)cmolsiB526
CmoCh02G000610Cp4.1LG16g07550Cucurbita pepo (Zucchini)cmocpeB570
CmoCh02G000610Cp4.1LG05g15240Cucurbita pepo (Zucchini)cmocpeB595
CmoCh02G000610MELO3C019731.2Melon (DHL92) v3.6.1cmomedB616
CmoCh02G000610CsaV3_6G015450Cucumber (Chinese Long) v3cmocucB0743
CmoCh02G000610Cla97C02G043920Watermelon (97103) v2cmowmbB603
CmoCh02G000610Bhi10G000800Wax gourdcmowgoB0737
CmoCh02G000610CsGy6G013050Cucumber (Gy14) v2cgybcmoB801
CmoCh02G000610Carg13620Silver-seed gourdcarcmoB0044
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmoCh02G000610CmoCh20G002560Cucurbita moschata (Rifu)cmocmoB411
The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh02G000610Silver-seed gourdcarcmoB0534
CmoCh02G000610Silver-seed gourdcarcmoB0725
CmoCh02G000610Cucurbita moschata (Rifu)cmocmoB121
CmoCh02G000610Cucurbita moschata (Rifu)cmocmoB390
CmoCh02G000610Cucumber (Gy14) v1cgycmoB0535
CmoCh02G000610Cucurbita maxima (Rimu)cmacmoB154
CmoCh02G000610Cucurbita maxima (Rimu)cmacmoB526
CmoCh02G000610Cucurbita maxima (Rimu)cmacmoB560
CmoCh02G000610Wild cucumber (PI 183967)cmocpiB630
CmoCh02G000610Wild cucumber (PI 183967)cmocpiB637
CmoCh02G000610Wild cucumber (PI 183967)cmocpiB640
CmoCh02G000610Cucumber (Chinese Long) v2cmocuB623
CmoCh02G000610Cucumber (Chinese Long) v2cmocuB629
CmoCh02G000610Melon (DHL92) v3.5.1cmomeB526
CmoCh02G000610Melon (DHL92) v3.5.1cmomeB563
CmoCh02G000610Watermelon (Charleston Gray)cmowcgB539
CmoCh02G000610Watermelon (97103) v1cmowmB586
CmoCh02G000610Cucurbita pepo (Zucchini)cmocpeB567
CmoCh02G000610Cucurbita pepo (Zucchini)cmocpeB592
CmoCh02G000610Bottle gourd (USVL1VR-Ls)cmolsiB543
CmoCh02G000610Cucumber (Gy14) v2cgybcmoB807