CmoCh01G020370 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh01G020370
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionUnknown protein
LocationCmo_Chr01 : 14276057 .. 14277043 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTCTCGGTGGATCATGGGACGGCTACGCCACCAACGGCCTTGCCGGGAAATCGGCGAGTCGGTTTAATAAATCTAATCGTCTGGAGGGAATAGAGAATTTTTCACGTGGTATTTGTTTACTTGTTAATTCAACGGGTTTAACTCGCGTAAAACGAGGAGTCCTAGCTAACGCAACGGTAAAAAATACTGTATAACGGTCCACTCAACTTCTGACACGTGTTCCTTAGTTTTCCGAATATGTTAAACTGACAAGTTTTGTTTCTTTTTGTGGTTGCAGTCAGAAATCAACGGAAACTCACAACACAAACACGCCAGTGATCAATGGCGGCAATGGCACAATGGTTTACGAAGGGGCTGCGTTTGATCTAAGCAGCGCGTCGAGAACAACGCTCCGCCATATTCTAGGCGTAGTTGTTGCCACGGTGGCAGTCCTTCAAATGTGGCAACTGTTTTGACCGACCGATCCTCGCTATATGTCATAGGTAGTAGTAGTAGCAGACCCATTACCTTTTACAGAACTTTTCAGCCCATTTTTGCCTAGAAGGAATCGTGTCACGTGTGGAGCCCACCACGGTTTTCAGTTTCGTTCGTTAAAAGGCATGATGGGCCAAGTGTGTGGGCCGGGCCCATATTTAGGGGACCCAAATGATGTGGATGCGAGTCATGAATGAAAAGGCTCATCCGCATACGTTAAATGAGGGAAGCCGCCAACCAATCCACCACCACCTTCAATGGCGAAAGCTGACATAGAAGAAGATTTTTAATATTTTTTAGGAATTCTTTCCAAGGATTATTTTACTTCAATTCTTTATAATTAGATGAAGAAGAAACAAAATAATGATATTTGGAGGATTCATTTATTTGTAATGGGGAACAATTCAATATTGTTAAATTTAATTCTTCTCCTCATGATTAAATTGTTTGATTACATCTGTATCACATTATAATAGTGTGCTATAAAAGAAATGAATCCTATATAACAG

mRNA sequence

ATGTCTCTCGGTGGATCATGGGACGGCTACGCCACCAACGGCCTTGCCGGGAAATCGGCGAGTCGTCAGAAATCAACGGAAACTCACAACACAAACACGCCAGTGATCAATGGCGGCAATGGCACAATGGTTTACGAAGGGGCTGCGTTTGATCTAAGCAGCGCGTCGAGAACAACGCTCCGCCATATTCTAGGCGTAGTTGTTGCCACGGTGGCAGTCCTTCAAATGTGGCAACTGTTTTGACCGACCGATCCTCGCTATATGTCATAGGTAGTAGTAGTAGCAGACCCATTACCTTTTACAGAACTTTTCAGCCCATTTTTGCCTAGAAGGAATCGTGTCACGTGTGGAGCCCACCACGGTTTTCAGTTTCGTTCGTTAAAAGGCATGATGGGCCAAGTGTGTGGGCCGGGCCCATATTTAGGGGACCCAAATGATGTGGATGCGAGTCATGAATGAAAAGGCTCATCCGCATACGTTAAATGAGGGAAGCCGCCAACCAATCCACCACCACCTTCAATGGCGAAAGCTGACATAGAAGAAGATTTTTAATATTTTTTAGGAATTCTTTCCAAGGATTATTTTACTTCAATTCTTTATAATTAGATGAAGAAGAAACAAAATAATGATATTTGGAGGATTCATTTATTTGTAATGGGGAACAATTCAATATTGTTAAATTTAATTCTTCTCCTCATGATTAAATTGTTTGATTACATCTGTATCACATTATAATAGTGTGCTATAAAAGAAATGAATCCTATATAACAG

Coding sequence (CDS)

ATGTCTCTCGGTGGATCATGGGACGGCTACGCCACCAACGGCCTTGCCGGGAAATCGGCGAGTCGTCAGAAATCAACGGAAACTCACAACACAAACACGCCAGTGATCAATGGCGGCAATGGCACAATGGTTTACGAAGGGGCTGCGTTTGATCTAAGCAGCGCGTCGAGAACAACGCTCCGCCATATTCTAGGCGTAGTTGTTGCCACGGTGGCAGTCCTTCAAATGTGGCAACTGTTTTGA
Homology
[Close]
BLAST of CmoCh01G020370 vs. TrEMBL
Match: A0A0A0LE84_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G872740 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 1.2e-16
Identity = 47/58 (81.03%), Postives = 51/58 (87.93%), Query Frame = 1 

Query: 23  QKSTETHNTNTPVINGGNGTMVYEGAAFDLSSASRTTLRHILGVVVATVAVLQMWQLF 81
           QKST+ HNTNTP INGGNGTMVYEGAA+D S ASRTTLR ILGVVVATV +LQ+ QLF
Sbjct: 252 QKSTDNHNTNTPAINGGNGTMVYEGAAYDFSGASRTTLRRILGVVVATVGILQIRQLF 309

[Close]
BLAST of CmoCh01G020370 vs. NCBI nr
Match: gi|659132953|ref|XP_008466475.1| (PREDICTED: thaumatin-like protein 1 [Cucumis melo])

HSP 1 Score: 94.7 bits (234), Expect = 7.6e-17
Identity = 47/58 (81.03%), Postives = 52/58 (89.66%), Query Frame = 1 

Query: 23  QKSTETHNTNTPVINGGNGTMVYEGAAFDLSSASRTTLRHILGVVVATVAVLQMWQLF 81
           QKST+ HNTNTP  NGGNGTMVYEGA +DLS ASRT+LRHILGVVVATVA+LQ+ QLF
Sbjct: 252 QKSTDNHNTNTPAFNGGNGTMVYEGAEYDLSGASRTSLRHILGVVVATVAILQIRQLF 309

[Close]
BLAST of CmoCh01G020370 vs. NCBI nr
Match: gi|449437194|ref|XP_004136377.1| (PREDICTED: thaumatin-like protein 1b [Cucumis sativus])

HSP 1 Score: 93.6 bits (231), Expect = 1.7e-16
Identity = 47/58 (81.03%), Postives = 51/58 (87.93%), Query Frame = 1 

Query: 23  QKSTETHNTNTPVINGGNGTMVYEGAAFDLSSASRTTLRHILGVVVATVAVLQMWQLF 81
           QKST+ HNTNTP INGGNGTMVYEGAA+D S ASRTTLR ILGVVVATV +LQ+ QLF
Sbjct: 252 QKSTDNHNTNTPAINGGNGTMVYEGAAYDFSGASRTTLRRILGVVVATVGILQIRQLF 309

The following BLAST results are available for this feature:
BLAST of CmoCh01G020370 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh01G020370 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LE84_CUCSA1.2e-1681.03Uncharacterized protein OS=Cucumis sativus GN=Csa_3G872740 PE=4 SV=1[more]
BLAST of CmoCh01G020370 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmoCh01G020370 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659132953|ref|XP_008466475.1|7.6e-1781.03PREDICTED: thaumatin-like protein 1 [Cucumis melo][more]
gi|449437194|ref|XP_004136377.1|1.7e-1681.03PREDICTED: thaumatin-like protein 1b [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh01G020370.1CmoCh01G020370.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh01G020370Wild cucumber (PI 183967)cmocpiB435
CmoCh01G020370Cucumber (Chinese Long) v2cmocuB431
CmoCh01G020370Melon (DHL92) v3.5.1cmomeB414
CmoCh01G020370Watermelon (Charleston Gray)cmowcgB412
CmoCh01G020370Watermelon (97103) v1cmowmB434
CmoCh01G020370Cucurbita pepo (Zucchini)cmocpeB419
CmoCh01G020370Cucurbita pepo (Zucchini)cmocpeB450
CmoCh01G020370Cucurbita pepo (Zucchini)cmocpeB465
CmoCh01G020370Bottle gourd (USVL1VR-Ls)cmolsiB393
CmoCh01G020370Bottle gourd (USVL1VR-Ls)cmolsiB412
CmoCh01G020370Bottle gourd (USVL1VR-Ls)cmolsiB439
CmoCh01G020370Cucumber (Gy14) v2cgybcmoB330
CmoCh01G020370Melon (DHL92) v3.6.1cmomedB474
CmoCh01G020370Melon (DHL92) v3.6.1cmomedB485
CmoCh01G020370Silver-seed gourdcarcmoB0146
CmoCh01G020370Silver-seed gourdcarcmoB0195
CmoCh01G020370Silver-seed gourdcarcmoB1263
CmoCh01G020370Cucumber (Chinese Long) v3cmocucB0521
CmoCh01G020370Watermelon (97103) v2cmowmbB427
CmoCh01G020370Watermelon (97103) v2cmowmbB461
CmoCh01G020370Wax gourdcmowgoB0619
CmoCh01G020370Cucurbita moschata (Rifu)cmocmoB017
CmoCh01G020370Cucurbita moschata (Rifu)cmocmoB369
CmoCh01G020370Cucumber (Gy14) v1cgycmoB0934
CmoCh01G020370Cucurbita maxima (Rimu)cmacmoB047
CmoCh01G020370Cucurbita maxima (Rimu)cmacmoB469
CmoCh01G020370Cucurbita maxima (Rimu)cmacmoB647
CmoCh01G020370Cucurbita maxima (Rimu)cmacmoB780
CmoCh01G020370Cucurbita maxima (Rimu)cmacmoB852