CmoCh01G019070 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh01G019070
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionCalcium-binding EF-hand family protein, putative
LocationCmo_Chr01 : 13701819 .. 13702100 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATCCGACAGAAGAGAAAAGCAAGAAGTCGAAGAAGAGGTCGAAGCTATCAAGAGAGCAACTTAGCGTAATCTTCAGAAACCACGACGGCGATGGCGACGGCCGTCTCAGCCCCTCTGAGCTCACCGAAGCTTTTCGATACATTGGTTCCTTTATGCCTTCGTACAGAGCTGGTAAAGCTCTTTCTCACGCTGATTCTAACAACGATGGATTCATCAACGAGGAGGAATTCGAATTACTCATCAATTATGCCGAAAAACGCAAATACACCGTCGTTTGA

mRNA sequence

ATGAATCCGACAGAAGAGAAAAGCAAGAAGTCGAAGAAGAGGTCGAAGCTATCAAGAGAGCAACTTAGCGTAATCTTCAGAAACCACGACGGCGATGGCGACGGCCGTCTCAGCCCCTCTGAGCTCACCGAAGCTTTTCGATACATTGGTTCCTTTATGCCTTCGTACAGAGCTGGTAAAGCTCTTTCTCACGCTGATTCTAACAACGATGGATTCATCAACGAGGAGGAATTCGAATTACTCATCAATTATGCCGAAAAACGCAAATACACCGTCGTTTGA

Coding sequence (CDS)

ATGAATCCGACAGAAGAGAAAAGCAAGAAGTCGAAGAAGAGGTCGAAGCTATCAAGAGAGCAACTTAGCGTAATCTTCAGAAACCACGACGGCGATGGCGACGGCCGTCTCAGCCCCTCTGAGCTCACCGAAGCTTTTCGATACATTGGTTCCTTTATGCCTTCGTACAGAGCTGGTAAAGCTCTTTCTCACGCTGATTCTAACAACGATGGATTCATCAACGAGGAGGAATTCGAATTACTCATCAATTATGCCGAAAAACGCAAATACACCGTCGTTTGA
Homology
[Close]
BLAST of CmoCh01G019070 vs. TrEMBL
Match: A0A0A0KZR6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G639730 PE=4 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 4.7e-25
Identity = 59/87 (67.82%), Postives = 73/87 (83.91%), Query Frame = 1 

Query: 7  KSKKSKKRSKLSREQLSVIFRNHDGDGDGRLSPSELTEAFRYIGSFMPSYRAGKALSHAD 66
          KSK    R+KLSREQL +IFRNHD D DGRLS +ELTEAFRYIG+F+P+YRA  AL HAD
Sbjct: 4  KSKNYYPRAKLSREQLLLIFRNHDSDKDGRLSTTELTEAFRYIGAFLPTYRARHALLHAD 63

Query: 67 SNNDGFINEEEFELLINYAEKRKYTVV 94
          S+ DGFI E++FE L+NYAE+R+YT++
Sbjct: 64 SDRDGFIGEKDFESLVNYAEQRQYTII 90

[Close]
BLAST of CmoCh01G019070 vs. TrEMBL
Match: A5B016_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_004362 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 4.9e-14
Identity = 41/76 (53.95%), Postives = 55/76 (72.37%), Query Frame = 1 

Query: 17 LSREQLSVIFRNHDGDGDGRLSPSELTEAFRYIGSFMPSYRAGKALSHADSNNDGFINEE 76
          L+ EQ+  IFR +D +GD RLS +EL EAF+++GS  P +RA +ALS AD+N DG+I+EE
Sbjct: 14 LTEEQIRGIFRKYDRBGDRRLSKAELKEAFKHLGSHFPXWRAXRALSRADANKDGYISEE 73

Query: 77 EFELLINYAEKRKYTV 93
          E   L+NYA K  Y V
Sbjct: 74 ELTSLVNYALKFGYKV 89

[Close]
BLAST of CmoCh01G019070 vs. TrEMBL
Match: A0A0A0LRC1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G358870 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 6.4e-14
Identity = 40/78 (51.28%), Postives = 55/78 (70.51%), Query Frame = 1 

Query: 10 KSKKRSKLSREQLSVIFRNHDGDGDGRLSPSELTEAFRYIGSFMPSYRAGKALSHADSNN 69
          ++  R +LSRE +  IFR HD DGDGRLS +E+ +AF   GS +P Y+A   ++HAD N 
Sbjct: 3  RAATRLQLSREDIKEIFREHDIDGDGRLSMNEMVKAFGCFGSILPFYKAHYGMAHADENG 62

Query: 70 DGFINEEEFELLINYAEK 88
          DGFI EEE + L++YA+K
Sbjct: 63 DGFIEEEELDKLVDYAQK 80

[Close]
BLAST of CmoCh01G019070 vs. TrEMBL
Match: A0A0J8FYB1_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_1g006140 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 1.6e-12
Identity = 39/79 (49.37%), Postives = 56/79 (70.89%), Query Frame = 1 

Query: 13 KRSKLSREQLSVIFRNHDGDGDGRLSPSELTEAFRYIGSFMPSYRAGKALSHADSNNDGF 72
          K++ LS EQL +IF  HD DGDGRL   +L EAFR +G+ +P+YRA +A+ ++D + DG 
Sbjct: 19 KKNPLSEEQLRMIFMAHDKDGDGRLDKEDLKEAFRALGARVPAYRADRAIHYSDLDLDGA 78

Query: 73 INEEEFELLINYAEKRKYT 92
          INE+E + L++YA    YT
Sbjct: 79 INEDEIDHLVSYALHYGYT 97

[Close]
BLAST of CmoCh01G019070 vs. TrEMBL
Match: W9RZZ8_9ROSA (Putative calcium-binding protein CML27 OS=Morus notabilis GN=L484_006332 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 2.0e-12
Identity = 38/81 (46.91%), Postives = 53/81 (65.43%), Query Frame = 1 

Query: 10  KSKKRSKLSREQLSVIFRNHDGDGDGRLSPSELTEAFRYIGSFMPSYRAGKALSHADSNN 69
           K+  ++  + EQL  +F+ HD + DG LS  ELT+AF  +GSF PS+RA +ALSH D N 
Sbjct: 20  KAVAKAPYNEEQLKDVFKKHDTNKDGLLSREELTKAFSSLGSFFPSWRASRALSHVDKNR 79

Query: 70  DGFINEEEFELLINYAEKRKY 91
           DGF++E EF  L+ Y  +  Y
Sbjct: 80  DGFVDENEFSDLVRYVAQLGY 100

[Close]
BLAST of CmoCh01G019070 vs. TAIR10
Match: AT3G50770.1 (AT3G50770.1 calmodulin-like 41)

HSP 1 Score: 47.4 bits (111), Expect = 5.7e-06
Identity = 22/66 (33.33%), Postives = 39/66 (59.09%), Query Frame = 1 

Query: 13  KRSKLSREQLSVIFRNHDGDGDGRLSPSELTEAFRYIGSFMPSYRAGKALSHADSNNDGF 72
           K  + S+E+L  +F + D DGDG++S  EL   F  +G ++    A +A++  D++ DG 
Sbjct: 56  KSHQASKEELRQVFSHFDSDGDGKISAFELRHYFGSVGEYISHEAAQEAINEVDTDADGS 115

Query: 73  INEEEF 79
           +  E+F
Sbjct: 116 LGFEDF 121

[Close]
BLAST of CmoCh01G019070 vs. TAIR10
Match: AT4G03290.1 (AT4G03290.1 EF hand calcium-binding protein family)

HSP 1 Score: 46.6 bits (109), Expect = 9.7e-06
Identity = 20/58 (34.48%), Postives = 35/58 (60.34%), Query Frame = 1 

Query: 21 QLSVIFRNHDGDGDGRLSPSELTEAFRYIGSFMPSYRAGKALSHADSNNDGFINEEEF 79
          +L+ +F+  D DGDG+++  EL E+F+ +G  +P     + +   D N DG ++ EEF
Sbjct: 5  ELNRVFQMFDKDGDGKITTKELNESFKNLGIIIPEDELTQIIQKIDVNGDGCVDIEEF 62

[Close]
BLAST of CmoCh01G019070 vs. NCBI nr
Match: gi|700200027|gb|KGN55185.1| (hypothetical protein Csa_4G639730 [Cucumis sativus])

HSP 1 Score: 121.7 bits (304), Expect = 6.7e-25
Identity = 59/87 (67.82%), Postives = 73/87 (83.91%), Query Frame = 1 

Query: 7  KSKKSKKRSKLSREQLSVIFRNHDGDGDGRLSPSELTEAFRYIGSFMPSYRAGKALSHAD 66
          KSK    R+KLSREQL +IFRNHD D DGRLS +ELTEAFRYIG+F+P+YRA  AL HAD
Sbjct: 4  KSKNYYPRAKLSREQLLLIFRNHDSDKDGRLSTTELTEAFRYIGAFLPTYRARHALLHAD 63

Query: 67 SNNDGFINEEEFELLINYAEKRKYTVV 94
          S+ DGFI E++FE L+NYAE+R+YT++
Sbjct: 64 SDRDGFIGEKDFESLVNYAEQRQYTII 90

[Close]
BLAST of CmoCh01G019070 vs. NCBI nr
Match: gi|449470198|ref|XP_004152805.1| (PREDICTED: probable calcium-binding protein CML10 [Cucumis sativus])

HSP 1 Score: 85.9 bits (211), Expect = 4.1e-14
Identity = 40/74 (54.05%), Postives = 53/74 (71.62%), Query Frame = 1 

Query: 14  RSKLSREQLSVIFRNHDGDGDGRLSPSELTEAFRYIGSFMPSYRAGKALSHADSNNDGFI 73
           R +LSRE +  IFR HD DGDGRLS +E+ +AF   GS +P Y+A   ++HAD N DGFI
Sbjct: 88  RLQLSREDIKEIFREHDIDGDGRLSMNEMVKAFGCFGSILPFYKAHYGMAHADENGDGFI 147

Query: 74  NEEEFELLINYAEK 88
            EEE + L++YA+K
Sbjct: 148 EEEELDKLVDYAQK 161

[Close]
BLAST of CmoCh01G019070 vs. NCBI nr
Match: gi|147772450|emb|CAN63002.1| (hypothetical protein VITISV_004362 [Vitis vinifera])

HSP 1 Score: 85.1 bits (209), Expect = 7.0e-14
Identity = 41/76 (53.95%), Postives = 55/76 (72.37%), Query Frame = 1 

Query: 17 LSREQLSVIFRNHDGDGDGRLSPSELTEAFRYIGSFMPSYRAGKALSHADSNNDGFINEE 76
          L+ EQ+  IFR +D +GD RLS +EL EAF+++GS  P +RA +ALS AD+N DG+I+EE
Sbjct: 14 LTEEQIRGIFRKYDRBGDRRLSKAELKEAFKHLGSHFPXWRAXRALSRADANKDGYISEE 73

Query: 77 EFELLINYAEKRKYTV 93
          E   L+NYA K  Y V
Sbjct: 74 ELTSLVNYALKFGYKV 89

[Close]
BLAST of CmoCh01G019070 vs. NCBI nr
Match: gi|700207397|gb|KGN62516.1| (hypothetical protein Csa_2G358870 [Cucumis sativus])

HSP 1 Score: 84.7 bits (208), Expect = 9.1e-14
Identity = 40/78 (51.28%), Postives = 55/78 (70.51%), Query Frame = 1 

Query: 10 KSKKRSKLSREQLSVIFRNHDGDGDGRLSPSELTEAFRYIGSFMPSYRAGKALSHADSNN 69
          ++  R +LSRE +  IFR HD DGDGRLS +E+ +AF   GS +P Y+A   ++HAD N 
Sbjct: 3  RAATRLQLSREDIKEIFREHDIDGDGRLSMNEMVKAFGCFGSILPFYKAHYGMAHADENG 62

Query: 70 DGFINEEEFELLINYAEK 88
          DGFI EEE + L++YA+K
Sbjct: 63 DGFIEEEELDKLVDYAQK 80

[Close]
BLAST of CmoCh01G019070 vs. NCBI nr
Match: gi|1009177545|ref|XP_015870031.1| (PREDICTED: probable calcium-binding protein CML10 [Ziziphus jujuba])

HSP 1 Score: 82.4 bits (202), Expect = 4.5e-13
Identity = 36/71 (50.70%), Postives = 53/71 (74.65%), Query Frame = 1 

Query: 18  SREQLSVIFRNHDGDGDGRLSPSELTEAFRYIGSFMPSYRAGKALSHADSNNDGFINEEE 77
           + + L  I + HD DGDGRLS +EL EAFR +G++ P++RA +ALSHAD+NNDG+I+++E
Sbjct: 41  NEKDLKQILKAHDVDGDGRLSKNELKEAFRKLGAWFPAFRAARALSHADANNDGYISDDE 100

Query: 78  FELLINYAEKR 89
            + L+ Y   R
Sbjct: 101 LDQLVKYVVNR 111

The following BLAST results are available for this feature:
BLAST of CmoCh01G019070 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh01G019070 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KZR6_CUCSA4.7e-2567.82Uncharacterized protein OS=Cucumis sativus GN=Csa_4G639730 PE=4 SV=1[more]
A5B016_VITVI4.9e-1453.95Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_004362 PE=4 SV=1[more]
A0A0A0LRC1_CUCSA6.4e-1451.28Uncharacterized protein OS=Cucumis sativus GN=Csa_2G358870 PE=4 SV=1[more]
A0A0J8FYB1_BETVU1.6e-1249.37Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_1g006140 PE=4 S... [more]
W9RZZ8_9ROSA2.0e-1246.91Putative calcium-binding protein CML27 OS=Morus notabilis GN=L484_006332 PE=4 SV... [more]
BLAST of CmoCh01G019070 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G50770.15.7e-0633.33 calmodulin-like 41[more]
AT4G03290.19.7e-0634.48 EF hand calcium-binding protein family[more]
BLAST of CmoCh01G019070 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700200027|gb|KGN55185.1|6.7e-2567.82hypothetical protein Csa_4G639730 [Cucumis sativus][more]
gi|449470198|ref|XP_004152805.1|4.1e-1454.05PREDICTED: probable calcium-binding protein CML10 [Cucumis sativus][more]
gi|147772450|emb|CAN63002.1|7.0e-1453.95hypothetical protein VITISV_004362 [Vitis vinifera][more]
gi|700207397|gb|KGN62516.1|9.1e-1451.28hypothetical protein Csa_2G358870 [Cucumis sativus][more]
gi|1009177545|ref|XP_015870031.1|4.5e-1350.70PREDICTED: probable calcium-binding protein CML10 [Ziziphus jujuba][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR002048EF_hand_dom
IPR011992EF-hand-dom_pair
IPR018247EF_Hand_1_Ca_BS
Vocabulary: Molecular Function
TermDefinition
GO:0005509calcium ion binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005509 calcium ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh01G019070.1CmoCh01G019070.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002048EF-hand domainPFAMPF13499EF-hand_7coord: 20..79
score: 1.
IPR002048EF-hand domainSMARTSM00054efh_1coord: 21..49
score: 1.9coord: 57..85
score:
IPR002048EF-hand domainPROFILEPS50222EF_HAND_2coord: 60..88
score: 8.572coord: 17..52
score: 12
IPR011992EF-hand domain pairGENE3DG3DSA:1.10.238.10coord: 17..81
score: 1.9
IPR011992EF-hand domain pairunknownSSF47473EF-handcoord: 18..82
score: 4.18
IPR018247EF-Hand 1, calcium-binding sitePROSITEPS00018EF_HAND_1coord: 66..78
score: -coord: 30..42
scor
NoneNo IPR availablePANTHERPTHR10891EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEINcoord: 5..85
score: 1.0
NoneNo IPR availablePANTHERPTHR10891:SF592CALCIUM-BINDING PROTEIN CML38-RELATEDcoord: 5..85
score: 1.0

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh01G019070Melon (DHL92) v3.5.1cmomeB403
CmoCh01G019070Melon (DHL92) v3.5.1cmomeB422
CmoCh01G019070Melon (DHL92) v3.5.1cmomeB442
CmoCh01G019070Watermelon (Charleston Gray)cmowcgB395
CmoCh01G019070Watermelon (Charleston Gray)cmowcgB412
CmoCh01G019070Watermelon (Charleston Gray)cmowcgB435
CmoCh01G019070Watermelon (97103) v1cmowmB416
CmoCh01G019070Watermelon (97103) v1cmowmB434
CmoCh01G019070Watermelon (97103) v1cmowmB445
CmoCh01G019070Cucurbita pepo (Zucchini)cmocpeB420
CmoCh01G019070Cucurbita pepo (Zucchini)cmocpeB450
CmoCh01G019070Cucurbita pepo (Zucchini)cmocpeB465
CmoCh01G019070Cucurbita pepo (Zucchini)cmocpeB474
CmoCh01G019070Bottle gourd (USVL1VR-Ls)cmolsiB390
CmoCh01G019070Bottle gourd (USVL1VR-Ls)cmolsiB412
CmoCh01G019070Bottle gourd (USVL1VR-Ls)cmolsiB442
CmoCh01G019070Cucumber (Gy14) v2cgybcmoB193
CmoCh01G019070Cucumber (Gy14) v2cgybcmoB485
CmoCh01G019070Melon (DHL92) v3.6.1cmomedB452
CmoCh01G019070Melon (DHL92) v3.6.1cmomedB461
CmoCh01G019070Melon (DHL92) v3.6.1cmomedB486
CmoCh01G019070Silver-seed gourdcarcmoB0146
CmoCh01G019070Silver-seed gourdcarcmoB0259
CmoCh01G019070Silver-seed gourdcarcmoB1044
CmoCh01G019070Cucumber (Chinese Long) v3cmocucB0510
CmoCh01G019070Cucumber (Chinese Long) v3cmocucB0551
CmoCh01G019070Watermelon (97103) v2cmowmbB461
CmoCh01G019070Watermelon (97103) v2cmowmbB486
CmoCh01G019070Wax gourdcmowgoB0570
CmoCh01G019070Wax gourdcmowgoB0598
CmoCh01G019070Cucurbita moschata (Rifu)cmocmoB017
CmoCh01G019070Cucurbita moschata (Rifu)cmocmoB105
CmoCh01G019070Cucurbita moschata (Rifu)cmocmoB141
CmoCh01G019070Cucurbita moschata (Rifu)cmocmoB352
CmoCh01G019070Cucurbita moschata (Rifu)cmocmoB369
CmoCh01G019070Cucurbita moschata (Rifu)cmocmoB376
CmoCh01G019070Cucumber (Gy14) v1cgycmoB0220
CmoCh01G019070Cucumber (Gy14) v1cgycmoB0319
CmoCh01G019070Cucumber (Gy14) v1cgycmoB0626
CmoCh01G019070Cucumber (Gy14) v1cgycmoB0642
CmoCh01G019070Cucurbita maxima (Rimu)cmacmoB047
CmoCh01G019070Cucurbita maxima (Rimu)cmacmoB469
CmoCh01G019070Cucurbita maxima (Rimu)cmacmoB646
CmoCh01G019070Cucurbita maxima (Rimu)cmacmoB779
CmoCh01G019070Cucurbita maxima (Rimu)cmacmoB851
CmoCh01G019070Wild cucumber (PI 183967)cmocpiB428
CmoCh01G019070Wild cucumber (PI 183967)cmocpiB465
CmoCh01G019070Wild cucumber (PI 183967)cmocpiB482
CmoCh01G019070Wild cucumber (PI 183967)cmocpiB491
CmoCh01G019070Cucumber (Chinese Long) v2cmocuB424
CmoCh01G019070Cucumber (Chinese Long) v2cmocuB461
CmoCh01G019070Cucumber (Chinese Long) v2cmocuB475