CmoCh01G017990 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh01G017990
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	17.9 kDa class II heat shock protein
Location	Cmo_Chr01 : 13241940 .. 13242419 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGTTGGCCAGAATGGGGTTGGACCCAATATTCCTGAATGCCCTCCATGACCTTCTGGACTTCACCGATGAGGCAGGGCAGAGCACCCACCACGGGCCGTCACGCGCCTTCGTGAGGGACGCAAAGGCGATGGCGGCGACTCCAGCGGATGTGGTAGAATATCCAAACGCCTACCAATTCTCCATCGACATGCCTGGCCTCAAAATGGACCAAATCAAGGTCCAAATCGAGGACAACCAGTTGGTTGTGACCGGCGAGAGGAAGAGAGAGAGTGAGAAGGTTAAGGAAGGGAAATATGTGACAATGGAGAGGAGGCTGGGCAAATACTTGAAGAAATTTGTGCTGCCGGAGGCCGCCGATGTCGACAAAGTATCAGCGGCGTACCAGGACGGAGTGCTGTCGGTCACGGTGGAGAAGAAGCCGCCGCCAGAGCCCAAAAAGGCCAAGACTATTGAGGTTCGTGTGGGACAAGATTGA

mRNA sequence

ATGGAGTTGGCCAGAATGGGGTTGGACCCAATATTCCTGAATGCCCTCCATGACCTTCTGGACTTCACCGATGAGGCAGGGCAGAGCACCCACCACGGGCCGTCACGCGCCTTCGTGAGGGACGCAAAGGCGATGGCGGCGACTCCAGCGGATGTGGTAGAATATCCAAACGCCTACCAATTCTCCATCGACATGCCTGGCCTCAAAATGGACCAAATCAAGGTCCAAATCGAGGACAACCAGTTGGTTGTGACCGGCGAGAGGAAGAGAGAGAGTGAGAAGGTTAAGGAAGGGAAATATGTGACAATGGAGAGGAGGCTGGGCAAATACTTGAAGAAATTTGTGCTGCCGGAGGCCGCCGATGTCGACAAAGTATCAGCGGCGTACCAGGACGGAGTGCTGTCGGTCACGGTGGAGAAGAAGCCGCCGCCAGAGCCCAAAAAGGCCAAGACTATTGAGGTTCGTGTGGGACAAGATTGA

Coding sequence (CDS)

ATGGAGTTGGCCAGAATGGGGTTGGACCCAATATTCCTGAATGCCCTCCATGACCTTCTGGACTTCACCGATGAGGCAGGGCAGAGCACCCACCACGGGCCGTCACGCGCCTTCGTGAGGGACGCAAAGGCGATGGCGGCGACTCCAGCGGATGTGGTAGAATATCCAAACGCCTACCAATTCTCCATCGACATGCCTGGCCTCAAAATGGACCAAATCAAGGTCCAAATCGAGGACAACCAGTTGGTTGTGACCGGCGAGAGGAAGAGAGAGAGTGAGAAGGTTAAGGAAGGGAAATATGTGACAATGGAGAGGAGGCTGGGCAAATACTTGAAGAAATTTGTGCTGCCGGAGGCCGCCGATGTCGACAAAGTATCAGCGGCGTACCAGGACGGAGTGCTGTCGGTCACGGTGGAGAAGAAGCCGCCGCCAGAGCCCAAAAAGGCCAAGACTATTGAGGTTCGTGTGGGACAAGATTGA

Homology

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BLAST of CmoCh01G017990 vs. Swiss-Prot
Match: HSP22_IPONI (18.8 kDa class II heat shock protein OS=Ipomoea nil GN=SHSP-2 PE=2 SV=1)

HSP 1 Score: 180.3 bits (456), Expect = 1.7e-44
Identity = 95/159 (59.75%), Postives = 122/159 (76.73%), Query Frame = 1


Query: 3   LARMGLDPIFLNALHDLLDFTDE---AGQSTHHGPSRAFVRDAKAMAATPADVVEYPNAY 62
           L+  GL+P  L+ + D+LDF D+   AG++    P RA+VRDAKAMAATPADV EYPN+Y
Sbjct: 8   LSNFGLEPQLLSTIQDMLDFADDHDRAGRAPPEQPIRAYVRDAKAMAATPADVKEYPNSY 67

Query: 63  QFSIDMPGLKMDQIKVQIED-NQLVVTGERKRESEKVKEG-KYVTMERRLGKYLKKFVLP 122
            F  DMPG+K  +IKVQ+ED N LVV+GER    +  K+G KY+ MERR+GK+++KFVLP
Sbjct: 68  VFIADMPGVKAAEIKVQVEDDNVLVVSGERTEREKDEKDGVKYLRMERRVGKFMRKFVLP 127

Query: 123 EAADVDKVSAAYQDGVLSVTVEKKPPPEPKKAKTIEVRV 157
           E A+V+ ++A YQDGVL VTVEK PPPEPKK KT+EV+V
Sbjct: 128 ENANVEAINAVYQDGVLQVTVEKLPPPEPKKPKTVEVKV 166

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BLAST of CmoCh01G017990 vs. Swiss-Prot
Match: HSP21_HELAN (17.9 kDa class II heat shock protein OS=Helianthus annuus GN=HSP17.9 PE=2 SV=1)

HSP 1 Score: 177.9 bits (450), Expect = 8.5e-44
Identity = 99/156 (63.46%), Postives = 121/156 (77.56%), Query Frame = 1


Query: 6   MGLDPIFLNALHDLLDFTDE---AGQSTHHGPSRAFVRDAKAMAATPADVVEYPNAYQFS 65
           MG DP+  N LH +L+ TD+     +S + GPSRA+VRDA+AMAATPADV E PN+Y F 
Sbjct: 7   MGFDPLLRN-LHYILEATDDNTTGNKSNNSGPSRAYVRDARAMAATPADVKECPNSYVFI 66

Query: 66  IDMPGLKMDQIKVQIE-DNQLVVTGERKRESEKVKEG-KYVTMERRLGKYLKKFVLPEAA 125
           +DMPGLK   IKVQ+E DN LV++G+R RE E  KEG KYV MERR+GK++KKF LPE A
Sbjct: 67  VDMPGLKSGDIKVQVERDNVLVISGKRNREEE--KEGVKYVRMERRMGKFMKKFALPEDA 126

Query: 126 DVDKVSAAYQDGVLSVTVEKKPPPEPKKAKTIEVRV 157
           + DK+SA  QDGVL+VTVEK PPPEPKK KTI+V+V
Sbjct: 127 NTDKISAICQDGVLTVTVEKLPPPEPKKPKTIQVQV 159

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BLAST of CmoCh01G017990 vs. Swiss-Prot
Match: HSP18_ORYSJ (18.0 kDa class II heat shock protein OS=Oryza sativa subsp. japonica GN=HSP18.0 PE=2 SV=1)

HSP 1 Score: 176.4 bits (446), Expect = 2.5e-43
Identity = 97/165 (58.79%), Postives = 120/165 (72.73%), Query Frame = 1


Query: 1   MELARMGLDPIFLNALHDLLDFTDEAG-----QSTHHGPSRAFVRDAKAMAATPADVVEY 60
           ME A  GL+   + AL  LLD  D  G     Q    GP+RA+VRDA+AMAATPADV + 
Sbjct: 1   MESAMFGLETPLMTALQHLLDIPDGEGGAAGKQGATGGPTRAYVRDARAMAATPADVKDL 60

Query: 61  PNAYQFSIDMPGLKMDQIKVQIEDNQL-VVTGERKR---ESEKVKEGKYVTMERRLGKYL 120
           P AY F +DMPGLK   IKVQ+E+ +L V++GER+R   E EK +  KY+ MERR+GK++
Sbjct: 61  PGAYAFVVDMPGLKSSDIKVQVEEERLLVISGERRRGGGEEEKEESCKYLRMERRMGKFM 120

Query: 121 KKFVLPEAADVDKVSAAYQDGVLSVTVEKKPPPEPKKAKTIEVRV 157
           +KFVLP+ ADVDK+SA  QDGVL+VTVEK PPPEPKK KTIEV+V
Sbjct: 121 RKFVLPDNADVDKISAVCQDGVLTVTVEKLPPPEPKKPKTIEVKV 165

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BLAST of CmoCh01G017990 vs. Swiss-Prot
Match: HSP21_PEA (17.1 kDa class II heat shock protein OS=Pisum sativum GN=HSP17.7 PE=2 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 7.2e-43
Identity = 91/153 (59.48%), Postives = 117/153 (76.47%), Query Frame = 1


Query: 6   MGLDPIFLNALHDLLDFTDEAGQSTHHGPSRAFVRDAKAMAATPADVVEYPNAYQFSIDM 65
           M LD    N LH ++D TD+  +   + P+R +VRDAKAMAATPADV E+PN+Y F +DM
Sbjct: 1   MDLDSPLFNTLHHIMDLTDDTTEKNLNAPTRTYVRDAKAMAATPADVKEHPNSYVFMVDM 60

Query: 66  PGLKMDQIKVQIED-NQLVVTGERKRESEKVKEG-KYVTMERRLGKYLKKFVLPEAADVD 125
           PG+K   IKVQ+ED N L+++GERKRE E  KEG KY+ MERR+GK ++KFVLPE A+++
Sbjct: 61  PGVKSGDIKVQVEDENVLLISGERKREEE--KEGVKYLKMERRIGKLMRKFVLPENANIE 120

Query: 126 KVSAAYQDGVLSVTVEKKPPPEPKKAKTIEVRV 157
            +SA  QDGVL+VTV K PPPEPKK KTI+V+V
Sbjct: 121 AISAISQDGVLTVTVNKLPPPEPKKPKTIQVKV 151

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BLAST of CmoCh01G017990 vs. Swiss-Prot
Match: HS176_ARATH (17.6 kDa class II heat shock protein OS=Arabidopsis thaliana GN=HSP17.6 PE=2 SV=1)

HSP 1 Score: 173.7 bits (439), Expect = 1.6e-42
Identity = 91/153 (59.48%), Postives = 121/153 (79.08%), Query Frame = 1


Query: 6   MGLDPIFLNALHDLLDFT-DEAGQSTHHGPSRAFVRDAKAMAATPADVVEYPNAYQFSID 65
           +G  PI ++ L D+L+   D   + T + PSR ++RDAKAMAATPADV+E+PNAY F +D
Sbjct: 3   LGRFPI-ISILEDMLEVPEDHNNEKTRNNPSRVYMRDAKAMAATPADVIEHPNAYAFVVD 62

Query: 66  MPGLKMDQIKVQIE-DNQLVVTGERKRESEKVKEGKYVTMERRLGKYLKKFVLPEAADVD 125
           MPG+K D+IKVQ+E DN LVV+GER+RE+++ +  KYV MERR+GK+++KF LPE AD+D
Sbjct: 63  MPGIKGDEIKVQVENDNVLVVSGERQRENKENEGVKYVRMERRMGKFMRKFQLPENADLD 122

Query: 126 KVSAAYQDGVLSVTVEKKPPPEPKKAKTIEVRV 157
           K+SA   DGVL VTV+K PPPEPKK KTI+V+V
Sbjct: 123 KISAVCHDGVLKVTVQKLPPPEPKKPKTIQVQV 154

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BLAST of CmoCh01G017990 vs. TrEMBL
Match: A0A0A0L5D4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G646350 PE=3 SV=1)

HSP 1 Score: 259.2 bits (661), Expect = 3.2e-66
Identity = 130/157 (82.80%), Postives = 145/157 (92.36%), Query Frame = 1


Query: 1   MELARM-GLDPIFLNALHDLLDFTDEAGQSTHHGPSRAFVRDAKAMAATPADVVEYPNAY 60
           ME+A+M G DP+FLNALHDLLDF+DE GQ +HH PSRA++RDAKAMAATPADVVEYPN+Y
Sbjct: 1   MEVAKMPGFDPLFLNALHDLLDFSDEPGQGSHHAPSRAYLRDAKAMAATPADVVEYPNSY 60

Query: 61  QFSIDMPGLKMDQIKVQIEDNQLVVTGERKRESEKVKEGKYVTMERRLGKYLKKFVLPEA 120
           QF+IDMPGL  DQIKV++ED QLVV+GERKRESEKVKEGK+V MERRLGKYLKKF LPE 
Sbjct: 61  QFTIDMPGLTSDQIKVKVEDGQLVVSGERKRESEKVKEGKFVRMERRLGKYLKKFDLPET 120

Query: 121 ADVDKVSAAYQDGVLSVTVEKKPPPEPKKAKTIEVRV 157
           AD DKVSAAY+DGVLSVTVEKKPPPEPKKAK+IEVRV
Sbjct: 121 ADADKVSAAYRDGVLSVTVEKKPPPEPKKAKSIEVRV 157

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BLAST of CmoCh01G017990 vs. TrEMBL
Match: A0A059CLA5_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_C00678 PE=3 SV=1)

HSP 1 Score: 212.2 bits (539), Expect = 4.5e-52
Identity = 112/167 (67.07%), Postives = 132/167 (79.04%), Query Frame = 1


Query: 1   MELARMGLDPIFLNALHDLLDFTDEAGQSTHHGPSRAFVRDAKAMAATPADVVEYPNAYQ 60
           M+L  MG DP  L+ LH+LLD +DE    +HH PSRAF+RD KAMAATPADV EYPN+Y 
Sbjct: 1   MDLRDMGFDPTVLDTLHELLDLSDEPDAKSHHAPSRAFLRDKKAMAATPADVKEYPNSYV 60

Query: 61  FSIDMPGLKMDQIKVQIED-NQLVVTGERKRESEK----VKEG------KYVTMERRLGK 120
           F +DMPGLK DQIKVQ+ED N LVV+GERKRE EK     K+G      +YV MERRLGK
Sbjct: 61  FVLDMPGLKPDQIKVQVEDGNMLVVSGERKREKEKDLKDQKDGAGGGLLRYVKMERRLGK 120

Query: 121 YLKKFVLPEAADVDKVSAAYQDGVLSVTVEKKPPPEPKKAKTIEVRV 157
           +LKKFVLPE AD +K+SA+YQDGVL+VTVEK+PPPEPKK KTIEV++
Sbjct: 121 FLKKFVLPENADPEKISASYQDGVLTVTVEKRPPPEPKKPKTIEVQI 167

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BLAST of CmoCh01G017990 vs. TrEMBL
Match: B9RQT8_RICCO (Heat-shock protein, putative OS=Ricinus communis GN=RCOM_0706500 PE=3 SV=1)

HSP 1 Score: 202.6 bits (514), Expect = 3.6e-49
Identity = 105/150 (70.00%), Postives = 122/150 (81.33%), Query Frame = 1


Query: 8   LDPIFLNALHDLLDFTDEAGQSTHHGPSRAFVRDAKAMAATPADVVEYPNAYQFSIDMPG 67
           LDP  L+ LH++L+ +DE  +S HH PSR +VRD KAMAATPAD  E PNAY F IDMPG
Sbjct: 10  LDPGILDVLHEILEVSDETEKS-HHAPSRTYVRDTKAMAATPADAKELPNAYMFVIDMPG 69

Query: 68  LKMDQIKVQIED-NQLVVTGERKRESEKVKEGKYVTMERRLGKYLKKFVLPEAADVDKVS 127
           LK DQIKV +ED N LVV+GERKRE EK +  +Y+ MERRLGKYLKKFVLPE AD +K+S
Sbjct: 70  LKADQIKVHVEDGNMLVVSGERKREKEKDQGVRYIRMERRLGKYLKKFVLPENADSEKIS 129

Query: 128 AAYQDGVLSVTVEKKPPPEPKKAKTIEVRV 157
           A YQDGVL+VTVEKKPPPEPKK KT+EV+V
Sbjct: 130 ATYQDGVLTVTVEKKPPPEPKKPKTVEVQV 158

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BLAST of CmoCh01G017990 vs. TrEMBL
Match: A0A061GKC6_THECC (Heat-shock protein, putative OS=Theobroma cacao GN=TCM_037346 PE=3 SV=1)

HSP 1 Score: 202.2 bits (513), Expect = 4.7e-49
Identity = 105/157 (66.88%), Postives = 128/157 (81.53%), Query Frame = 1


Query: 1   MELARMGLDPIFLNALHDLLDFTDEAGQSTHHGPSRAFVRDAKAMAATPADVVEYPNAYQ 60
           M+   MG DP  ++ LH+LLDF D+A +S  H PSRA++RDAKAMAATPADV + PNAY 
Sbjct: 1   MDWRVMGFDPSVIDTLHELLDFPDDADKSQPH-PSRAYIRDAKAMAATPADVKDCPNAYV 60

Query: 61  FSIDMPGLKMDQIKVQIED-NQLVVTGERKRESEKVKEGKYVTMERRLGKYLKKFVLPEA 120
             IDMPGLK DQ+KVQ+E+ N LVV+GERKRE EK +  K++ MERRLGKYLKKF LPE 
Sbjct: 61  VVIDMPGLKQDQLKVQVEEGNFLVVSGERKREKEKDQGVKFIKMERRLGKYLKKFQLPEM 120

Query: 121 ADVDKVSAAYQDGVLSVTVEKKPPPEPKKAKTIEVRV 157
           AD +K+SA+YQDGVL+VTVEKKPPPEPKK +T+EV+V
Sbjct: 121 ADTEKISASYQDGVLTVTVEKKPPPEPKKPRTVEVQV 156

[Close]

BLAST of CmoCh01G017990 vs. TrEMBL
Match: W9QXD5_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_003776 PE=3 SV=1)

HSP 1 Score: 202.2 bits (513), Expect = 4.7e-49
Identity = 109/158 (68.99%), Postives = 126/158 (79.75%), Query Frame = 1


Query: 6   MGLDPIFLN--ALHDLLDFTDEA----GQSTHHGPSRAFVRDAKAMAATPADVVEYPNAY 65
           MGLDP  L    LHD+LD+++E     G   HH PSRA+VRDAKAMAATPADV + PNAY
Sbjct: 1   MGLDPAQLIEFTLHDILDYSEETSGGPGGEAHHAPSRAYVRDAKAMAATPADVKDTPNAY 60

Query: 66  QFSIDMPGLKMDQIKVQIED-NQLVVTGERKRESEKVKEGKYVTMERRLGKYLKKFVLPE 125
            F IDMPGLK DQIKV +E+ N LVV+GERKRE EK +  KY+ MERRLGKYLKKFVLPE
Sbjct: 61  VFVIDMPGLKQDQIKVHVEEENVLVVSGERKREREKDQGVKYLRMERRLGKYLKKFVLPE 120

Query: 126 AADVDKVSAAYQDGVLSVTVEKKPPPEPKKAKTIEVRV 157
            AD DK+SA+YQDGVL+VT++KKPPPEPKK KT EV+V
Sbjct: 121 NADTDKISASYQDGVLTVTIQKKPPPEPKKPKTSEVQV 158

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BLAST of CmoCh01G017990 vs. TAIR10
Match: AT5G12020.1 (AT5G12020.1 17.6 kDa class II heat shock protein)

HSP 1 Score: 173.7 bits (439), Expect = 9.0e-44
Identity = 91/153 (59.48%), Postives = 121/153 (79.08%), Query Frame = 1


Query: 6   MGLDPIFLNALHDLLDFT-DEAGQSTHHGPSRAFVRDAKAMAATPADVVEYPNAYQFSID 65
           +G  PI ++ L D+L+   D   + T + PSR ++RDAKAMAATPADV+E+PNAY F +D
Sbjct: 3   LGRFPI-ISILEDMLEVPEDHNNEKTRNNPSRVYMRDAKAMAATPADVIEHPNAYAFVVD 62

Query: 66  MPGLKMDQIKVQIE-DNQLVVTGERKRESEKVKEGKYVTMERRLGKYLKKFVLPEAADVD 125
           MPG+K D+IKVQ+E DN LVV+GER+RE+++ +  KYV MERR+GK+++KF LPE AD+D
Sbjct: 63  MPGIKGDEIKVQVENDNVLVVSGERQRENKENEGVKYVRMERRMGKFMRKFQLPENADLD 122

Query: 126 KVSAAYQDGVLSVTVEKKPPPEPKKAKTIEVRV 157
           K+SA   DGVL VTV+K PPPEPKK KTI+V+V
Sbjct: 123 KISAVCHDGVLKVTVQKLPPPEPKKPKTIQVQV 154

[Close]

BLAST of CmoCh01G017990 vs. TAIR10
Match: AT5G12030.1 (AT5G12030.1 heat shock protein 17.6A)

HSP 1 Score: 169.5 bits (428), Expect = 1.7e-42
Identity = 86/151 (56.95%), Postives = 123/151 (81.46%), Query Frame = 1


Query: 7   GLDPIFLNALHDLLDFTDEAGQSTHHGPSRAFVRDAKAMAATPADVVEYPNAYQFSIDMP 66
           G  PIF + L D+L+  +E  + T + PSRA++RDAKAMAATPADV+E+P+AY F++DMP
Sbjct: 6   GRFPIF-SILEDMLEAPEEQTEKTRNNPSRAYMRDAKAMAATPADVIEHPDAYVFAVDMP 65

Query: 67  GLKMDQIKVQIE-DNQLVVTGERKRESEKVKEGKYVTMERRLGKYLKKFVLPEAADVDKV 126
           G+K D+I+VQIE +N LVV+G+R+R++++ +  K+V MERR+GK+++KF LP+ AD++K+
Sbjct: 66  GIKGDEIQVQIENENVLVVSGKRQRDNKENEGVKFVRMERRMGKFMRKFQLPDNADLEKI 125

Query: 127 SAAYQDGVLSVTVEKKPPPEPKKAKTIEVRV 157
           SAA  DGVL VT+ K PPPEPKK KTI+V+V
Sbjct: 126 SAACNDGVLKVTIPKLPPPEPKKPKTIQVQV 155

[Close]

BLAST of CmoCh01G017990 vs. TAIR10
Match: AT1G54050.1 (AT1G54050.1 HSP20-like chaperones superfamily protein)

HSP 1 Score: 90.9 bits (224), Expect = 7.7e-19
Identity = 51/113 (45.13%), Postives = 78/113 (69.03%), Query Frame = 1


Query: 49  PADVVEYPNAYQFSIDMPGLKMDQIKVQIEDNQLVV---TGERKRESEKVKEG-KYVTME 108
           P D++E P  Y F +D+PG+    I+V +E+ + +V    G+RKR+ ++ +EG KY+ +E
Sbjct: 43  PIDILESPKEYIFYLDIPGISKSDIQVTVEEERTLVIKSNGKRKRDDDESEEGSKYIRLE 102

Query: 109 RRLGKYL-KKFVLPEAADVDKVSAAYQDGVLSVTVEKKPPPEPKKAKTIEVRV 157
           RRL + L KKF LPE AD+  V+A YQ+GVL+V + KK PP+P K KT+++ V
Sbjct: 103 RRLAQNLVKKFRLPEDADMASVTAKYQEGVLTVVI-KKLPPQPPKPKTVQIAV 154

[Close]

BLAST of CmoCh01G017990 vs. TAIR10
Match: AT1G53540.1 (AT1G53540.1 HSP20-like chaperones superfamily protein)

HSP 1 Score: 83.2 bits (204), Expect = 1.6e-16
Identity = 50/129 (38.76%), Postives = 80/129 (62.02%), Query Frame = 1


Query: 27  GQSTHHGPSRAFVRDAKAMAATPADVVEYPNAYQFSIDMPGLKMDQIKVQIED-NQLVVT 86
           G  T  G + A   D  A      D  E P A+ F  D+PGL+ +++KV++ED N L ++
Sbjct: 29  GFLTPSGLANAPAMDVAAFTNAKVDWRETPEAHVFKADLPGLRKEEVKVEVEDGNILQIS 88

Query: 87  GERKRESEKVKEGKYVTMERRLGKYLKKFVLPEAADVDKVSAAYQDGVLSVTVEKKPPPE 146
           GER  E+E+ K  K+  +ER  GK+ ++F LPE A ++++ A+ ++GVLSVTV K P  +
Sbjct: 89  GERSNENEE-KNDKWHRVERSSGKFTRRFRLPENAKMEEIKASMENGVLSVTVPKVPEKK 148

Query: 147 PKKAKTIEV 155
           P + K+I++
Sbjct: 149 P-EVKSIDI 155

[Close]

BLAST of CmoCh01G017990 vs. TAIR10
Match: AT5G59720.1 (AT5G59720.1 heat shock protein 18.2)

HSP 1 Score: 83.2 bits (204), Expect = 1.6e-16
Identity = 47/116 (40.52%), Postives = 76/116 (65.52%), Query Frame = 1


Query: 40  RDAKAMAATPADVVEYPNAYQFSIDMPGLKMDQIKVQIED-NQLVVTGERKRESEKVKEG 99
           RD  A      D  E P A+ F  D+PGLK +++KV++ED N L ++GER +E+E+ K  
Sbjct: 44  RDVAAFTNARVDWKETPEAHVFKADLPGLKKEEVKVEVEDKNVLQISGERSKENEE-KND 103

Query: 100 KYVTMERRLGKYLKKFVLPEAADVDKVSAAYQDGVLSVTVEKKPPPEPKKAKTIEV 155
           K+  +ER  GK++++F LPE A +++V A  ++GVL+V V K P  +P + K+I++
Sbjct: 104 KWHRVERASGKFMRRFRLPENAKMEEVKATMENGVLTVVVPKAPEKKP-QVKSIDI 157

[Close]

BLAST of CmoCh01G017990 vs. NCBI nr
Match: gi|659103977|ref|XP_008452768.1| (PREDICTED: 17.3 kDa class II heat shock protein-like [Cucumis melo])

HSP 1 Score: 267.3 bits (682), Expect = 1.7e-68
Identity = 130/156 (83.33%), Postives = 146/156 (93.59%), Query Frame = 1


Query: 1   MELARMGLDPIFLNALHDLLDFTDEAGQSTHHGPSRAFVRDAKAMAATPADVVEYPNAYQ 60
           M++A+MG DP+FLNALHDLLDF+DE GQS+HH PSRA++RDAKAMAATPADVVEYPN+YQ
Sbjct: 1   MDVAKMGFDPLFLNALHDLLDFSDEPGQSSHHAPSRAYLRDAKAMAATPADVVEYPNSYQ 60

Query: 61  FSIDMPGLKMDQIKVQIEDNQLVVTGERKRESEKVKEGKYVTMERRLGKYLKKFVLPEAA 120
           F+IDMPGLK DQIKV++ED QLVV+GERKRESEKVKEGK+V MERRLGKYLKKF LPE A
Sbjct: 61  FTIDMPGLKSDQIKVKVEDGQLVVSGERKRESEKVKEGKFVRMERRLGKYLKKFELPETA 120

Query: 121 DVDKVSAAYQDGVLSVTVEKKPPPEPKKAKTIEVRV 157
           D DK+SAAYQDGVLSVTVEKKPPPEPKKAKTIE+ V
Sbjct: 121 DTDKISAAYQDGVLSVTVEKKPPPEPKKAKTIEIHV 156

[Close]

BLAST of CmoCh01G017990 vs. NCBI nr
Match: gi|449447157|ref|XP_004141335.1| (PREDICTED: 17.9 kDa class II heat shock protein [Cucumis sativus])

HSP 1 Score: 259.2 bits (661), Expect = 4.6e-66
Identity = 130/157 (82.80%), Postives = 145/157 (92.36%), Query Frame = 1


Query: 1   MELARM-GLDPIFLNALHDLLDFTDEAGQSTHHGPSRAFVRDAKAMAATPADVVEYPNAY 60
           ME+A+M G DP+FLNALHDLLDF+DE GQ +HH PSRA++RDAKAMAATPADVVEYPN+Y
Sbjct: 1   MEVAKMPGFDPLFLNALHDLLDFSDEPGQGSHHAPSRAYLRDAKAMAATPADVVEYPNSY 60

Query: 61  QFSIDMPGLKMDQIKVQIEDNQLVVTGERKRESEKVKEGKYVTMERRLGKYLKKFVLPEA 120
           QF+IDMPGL  DQIKV++ED QLVV+GERKRESEKVKEGK+V MERRLGKYLKKF LPE 
Sbjct: 61  QFTIDMPGLTSDQIKVKVEDGQLVVSGERKRESEKVKEGKFVRMERRLGKYLKKFDLPET 120

Query: 121 ADVDKVSAAYQDGVLSVTVEKKPPPEPKKAKTIEVRV 157
           AD DKVSAAY+DGVLSVTVEKKPPPEPKKAK+IEVRV
Sbjct: 121 ADADKVSAAYRDGVLSVTVEKKPPPEPKKAKSIEVRV 157

[Close]

BLAST of CmoCh01G017990 vs. NCBI nr
Match: gi|702291759|ref|XP_010047373.1| (PREDICTED: 17.1 kDa class II heat shock protein-like [Eucalyptus grandis])

HSP 1 Score: 212.2 bits (539), Expect = 6.5e-52
Identity = 112/167 (67.07%), Postives = 132/167 (79.04%), Query Frame = 1


Query: 1   MELARMGLDPIFLNALHDLLDFTDEAGQSTHHGPSRAFVRDAKAMAATPADVVEYPNAYQ 60
           M+L  MG DP  L+ LH+LLD +DE    +HH PSRAF+RD KAMAATPADV EYPN+Y 
Sbjct: 1   MDLRDMGFDPTVLDTLHELLDLSDEPDAKSHHAPSRAFLRDKKAMAATPADVKEYPNSYV 60

Query: 61  FSIDMPGLKMDQIKVQIED-NQLVVTGERKRESEK----VKEG------KYVTMERRLGK 120
           F +DMPGLK DQIKVQ+ED N LVV+GERKRE EK     K+G      +YV MERRLGK
Sbjct: 61  FVLDMPGLKPDQIKVQVEDGNMLVVSGERKREKEKDLKDQKDGAGGGLLRYVKMERRLGK 120

Query: 121 YLKKFVLPEAADVDKVSAAYQDGVLSVTVEKKPPPEPKKAKTIEVRV 157
           +LKKFVLPE AD +K+SA+YQDGVL+VTVEK+PPPEPKK KTIEV++
Sbjct: 121 FLKKFVLPENADPEKISASYQDGVLTVTVEKRPPPEPKKPKTIEVQI 167

[Close]

BLAST of CmoCh01G017990 vs. NCBI nr
Match: gi|255550113|ref|XP_002516107.1| (PREDICTED: 17.1 kDa class II heat shock protein [Ricinus communis])

HSP 1 Score: 202.6 bits (514), Expect = 5.1e-49
Identity = 105/150 (70.00%), Postives = 122/150 (81.33%), Query Frame = 1


Query: 8   LDPIFLNALHDLLDFTDEAGQSTHHGPSRAFVRDAKAMAATPADVVEYPNAYQFSIDMPG 67
           LDP  L+ LH++L+ +DE  +S HH PSR +VRD KAMAATPAD  E PNAY F IDMPG
Sbjct: 10  LDPGILDVLHEILEVSDETEKS-HHAPSRTYVRDTKAMAATPADAKELPNAYMFVIDMPG 69

Query: 68  LKMDQIKVQIED-NQLVVTGERKRESEKVKEGKYVTMERRLGKYLKKFVLPEAADVDKVS 127
           LK DQIKV +ED N LVV+GERKRE EK +  +Y+ MERRLGKYLKKFVLPE AD +K+S
Sbjct: 70  LKADQIKVHVEDGNMLVVSGERKREKEKDQGVRYIRMERRLGKYLKKFVLPENADSEKIS 129

Query: 128 AAYQDGVLSVTVEKKPPPEPKKAKTIEVRV 157
           A YQDGVL+VTVEKKPPPEPKK KT+EV+V
Sbjct: 130 ATYQDGVLTVTVEKKPPPEPKKPKTVEVQV 158

[Close]

BLAST of CmoCh01G017990 vs. NCBI nr
Match: gi|703082483|ref|XP_010091963.1| (hypothetical protein L484_003776 [Morus notabilis])

HSP 1 Score: 202.2 bits (513), Expect = 6.7e-49
Identity = 109/158 (68.99%), Postives = 126/158 (79.75%), Query Frame = 1


Query: 6   MGLDPIFLN--ALHDLLDFTDEA----GQSTHHGPSRAFVRDAKAMAATPADVVEYPNAY 65
           MGLDP  L    LHD+LD+++E     G   HH PSRA+VRDAKAMAATPADV + PNAY
Sbjct: 1   MGLDPAQLIEFTLHDILDYSEETSGGPGGEAHHAPSRAYVRDAKAMAATPADVKDTPNAY 60

Query: 66  QFSIDMPGLKMDQIKVQIED-NQLVVTGERKRESEKVKEGKYVTMERRLGKYLKKFVLPE 125
            F IDMPGLK DQIKV +E+ N LVV+GERKRE EK +  KY+ MERRLGKYLKKFVLPE
Sbjct: 61  VFVIDMPGLKQDQIKVHVEEENVLVVSGERKREREKDQGVKYLRMERRLGKYLKKFVLPE 120

Query: 126 AADVDKVSAAYQDGVLSVTVEKKPPPEPKKAKTIEVRV 157
            AD DK+SA+YQDGVL+VT++KKPPPEPKK KT EV+V
Sbjct: 121 NADTDKISASYQDGVLTVTIQKKPPPEPKKPKTSEVQV 158

The following BLAST results are available for this feature:

BLAST of CmoCh01G017990 vs. Swiss-Prot


Match Name	E-value	Identity	Description
HSP22_IPONI	1.7e-44	59.75	18.8 kDa class II heat shock protein OS=Ipomoea nil GN=SHSP-2 PE=2 SV=1	[more]
HSP21_HELAN	8.5e-44	63.46	17.9 kDa class II heat shock protein OS=Helianthus annuus GN=HSP17.9 PE=2 SV=1	[more]
HSP18_ORYSJ	2.5e-43	58.79	18.0 kDa class II heat shock protein OS=Oryza sativa subsp. japonica GN=HSP18.0 ...	[more]
HSP21_PEA	7.2e-43	59.48	17.1 kDa class II heat shock protein OS=Pisum sativum GN=HSP17.7 PE=2 SV=1	[more]
HS176_ARATH	1.6e-42	59.48	17.6 kDa class II heat shock protein OS=Arabidopsis thaliana GN=HSP17.6 PE=2 SV=...	[more]

BLAST of CmoCh01G017990 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L5D4_CUCSA	3.2e-66	82.80	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G646350 PE=3 SV=1	[more]
A0A059CLA5_EUCGR	4.5e-52	67.07	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_C00678 PE=3 SV=1	[more]
B9RQT8_RICCO	3.6e-49	70.00	Heat-shock protein, putative OS=Ricinus communis GN=RCOM_0706500 PE=3 SV=1	[more]
A0A061GKC6_THECC	4.7e-49	66.88	Heat-shock protein, putative OS=Theobroma cacao GN=TCM_037346 PE=3 SV=1	[more]
W9QXD5_9ROSA	4.7e-49	68.99	Uncharacterized protein OS=Morus notabilis GN=L484_003776 PE=3 SV=1	[more]

BLAST of CmoCh01G017990 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G12020.1	9.0e-44	59.48	17.6 kDa class II heat shock protein	[more]
AT5G12030.1	1.7e-42	56.95	heat shock protein 17.6A	[more]
AT1G54050.1	7.7e-19	45.13	HSP20-like chaperones superfamily protein	[more]
AT1G53540.1	1.6e-16	38.76	HSP20-like chaperones superfamily protein	[more]
AT5G59720.1	1.6e-16	40.52	heat shock protein 18.2	[more]

BLAST of CmoCh01G017990 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659103977\|ref\|XP_008452768.1\|	1.7e-68	83.33	PREDICTED: 17.3 kDa class II heat shock protein-like [Cucumis melo]	[more]
gi\|449447157\|ref\|XP_004141335.1\|	4.6e-66	82.80	PREDICTED: 17.9 kDa class II heat shock protein [Cucumis sativus]	[more]
gi\|702291759\|ref\|XP_010047373.1\|	6.5e-52	67.07	PREDICTED: 17.1 kDa class II heat shock protein-like [Eucalyptus grandis]	[more]
gi\|255550113\|ref\|XP_002516107.1\|	5.1e-49	70.00	PREDICTED: 17.1 kDa class II heat shock protein [Ricinus communis]	[more]
gi\|703082483\|ref\|XP_010091963.1\|	6.7e-49	68.99	hypothetical protein L484_003776 [Morus notabilis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR002068	A-crystallin/Hsp20_dom
IPR008978	HSP20-like_chaperone

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh01G017990.1	CmoCh01G017990.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002068	Alpha crystallin/Hsp20 domain	PFAM	PF00011	HSP20	coord: 51..154 score: 2.4
IPR002068	Alpha crystallin/Hsp20 domain	PROFILE	PS01031	HSP20	coord: 51..140 score: 23
IPR008978	HSP20-like chaperone	GENE3D	G3DSA:2.60.40.790		coord: 15..154 score: 4.5
IPR008978	HSP20-like chaperone	unknown	SSF49764	HSP20-like chaperones	coord: 33..150 score: 6.98
None	No IPR available	PANTHER	PTHR11527:SF93	17.6 KDA CLASS II HEAT SHOCK PROTEIN-RELATED	coord: 6..159 score: 1.2

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh01G017990	Cucumber (Gy14) v2	cgybcmoB926
CmoCh01G017990	Melon (DHL92) v3.6.1	cmomedB455
CmoCh01G017990	Melon (DHL92) v3.6.1	cmomedB499
CmoCh01G017990	Silver-seed gourd	carcmoB0133
CmoCh01G017990	Silver-seed gourd	carcmoB0614
CmoCh01G017990	Silver-seed gourd	carcmoB0872
CmoCh01G017990	Silver-seed gourd	carcmoB1043
CmoCh01G017990	Cucumber (Chinese Long) v3	cmocucB0541
CmoCh01G017990	Watermelon (97103) v2	cmowmbB456
CmoCh01G017990	Wax gourd	cmowgoB0617
CmoCh01G017990	Wax gourd	cmowgoB0629
CmoCh01G017990	Cucurbita moschata (Rifu)	cmocmoB014
CmoCh01G017990	Cucurbita moschata (Rifu)	cmocmoB067
CmoCh01G017990	Cucumber (Gy14) v1	cgycmoB0821
CmoCh01G017990	Cucurbita maxima (Rimu)	cmacmoB042
CmoCh01G017990	Cucurbita maxima (Rimu)	cmacmoB469
CmoCh01G017990	Cucurbita maxima (Rimu)	cmacmoB470
CmoCh01G017990	Wild cucumber (PI 183967)	cmocpiB457
CmoCh01G017990	Cucumber (Chinese Long) v2	cmocuB453
CmoCh01G017990	Melon (DHL92) v3.5.1	cmomeB435
CmoCh01G017990	Watermelon (Charleston Gray)	cmowcgB408
CmoCh01G017990	Watermelon (97103) v1	cmowmB429
CmoCh01G017990	Cucurbita pepo (Zucchini)	cmocpeB445
CmoCh01G017990	Cucurbita pepo (Zucchini)	cmocpeB462
CmoCh01G017990	Cucurbita pepo (Zucchini)	cmocpeB465
CmoCh01G017990	Bottle gourd (USVL1VR-Ls)	cmolsiB412
CmoCh01G017990	Bottle gourd (USVL1VR-Ls)	cmolsiB422
CmoCh01G017990	Cucumber (Gy14) v2	cgybcmoB103
CmoCh01G017990	Cucumber (Gy14) v2	cgybcmoB475