CmoCh01G017650 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh01G017650
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionBRISC and BRCA1-A complex member 1
LocationCmo_Chr01 : 13090662 .. 13094367 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTAACTCGACACGACATCATTTCTGTGTTGCAATTTGCAGAGAGCGACGGCGAGAACCATGGAGGGTATGGAAGGGGAGAGAGGAGGAAGCCGATACTCACTGAAGCCATCGAGAATTAACAACGAAGACATTCTGTTCTGCATAGATGTGAACCCCGAATCCTCCGTCGAGATCAAAACCACCGGCTCTAATGGACGACCTATCACCAGAATGGACTCCATTAAGCAAGCAATTCTTCTCTTCGTCCACGCCAAACTCTCCATGAATCCCGACCACCGATTTGCCTTCACCACCATCGCCAAATCTGCCACTTGGGTAATGCCCTATCCATCGCCTATTTCTTGTTGATCTTGCTTTCTTCTTTCTGTTCTTTCTATTTTCCAGAAATTTAGAATTGGGATGATGAAGTTTCTAGGGTTTCTGTCTGTTTTAGGTTAAAGGTAATTTTAATTTTAGGGGAGTTATATATTTCTTCGTATTCTTCCAGTCTTTTTAACTCCACGGACAGCCTTTTTGTTTTTAGCATTTTGCGCATCGTTATGCTTATTGACCTAAACTGGTGAACTGAAATTGTAACTAGTGATCAAGGATTTAATGTGGTTCTGGAGAAATTATGGATTGTTCTTTGGTTGGAAACTCGCAGTTCAAATTCTTATGCAATTTGAGTTGTACTTGGCATTCTGTTGGAGACTATATCTGAGTTTTTCTTCTGATCCAACTCATACTAACTTTAAGACTTTGCATAGTGTGAATGTGATTATCCTCTTAGGTCCTTATTTATGACTGATTATCCTCTTAGGTCCTTATTTATGAGAGTCGTGATTCCTAACATGGTATCAGAGCTATGCCCTAAACTTAGCCATGTCAATGGAATCCTCAAATATCGAACAGAGAATTGTGAGCCTTGAAAGTGTAGTCAAAAGTGACTAAAGTGTCGAACAAAGGGTGTACTTTGTTTGAGGGCTCCAGAGAAAGGAGTCGAGCCTCGATTAAGGGGAGGCTATTCGAGAGCTCCATAAGCCATGGGGGAGGCTTATAGTGTACTTTGTTCAAGGGAAGGATTATTAAGGATTATTGGGAGTGAGTTCCGTTTAATTTAGTGGAAGATCATGGGTTTATAAGTGAGGAATACTATCTTCATTGGTATGAGGCCTTTTAGGGAAGCTCAAAGCAAAGCTACGAGAGCTTATGCTCAAAGTGGACAATATCATATTATTGTGGAGAGTCGTGATTCCTAACAATAAACTTGCCGATCAAACTAGTAATCAATTTGCAACTTTGAATTGAAGAATATGGAATGTCTTAAGCCTCAATTTCTTTGGGAAGCGGGATAAGATGCATATGAGAAGTTGGAGTAGGAAAACTACTGAGGCAATGAACTTGGGGATACGGCCAAAATGGGTCAATTGGGCTTTGCCAACTCTTGTGGTGGCGGCTTCTTTTCTTACTGTGCGACAGATTGTCTTTGGGTCAAGGCTTGCTATTGTAATCTTTTGGCGGGACTGGGTCAGATTCTGATCGGTACGAGTCAACCCTTGGCCTCTGATTTCCATATAAAGGACACGACCGTGCATAAATACCCTCTTTCACTTCTATTCTGATGGACTGAATGTCTTTCATAAGGAATCGGAGTCAGATTCTAGGATTTTGTCCAGGAAACCCCCCAAAATAGACACTATTCCGCTCCTTCCTTCCCCTCTGCCTTCTCTTCTTTAACTGTAAACTCGGTCTCTTTGCTTTCCTTGGATTCTGCTTAATGAGACTCTGAAAATGAGATTAAGCGAAGCTCACTCCTTTTCCCTCTGTCCCCCGGGGCCGGCAAAATCAGAGACGAAGCTTTATGGTATTTCTCTTTGTTTTTATTGGAATTGGAAAAGGAGATGGGTATGTTCTCGAAAGGGAAGGCAGAGGTAGTACTTCGAACATTTTCCTTTCTGCTTTGTTTACTCTTTCTCAGAGGTGTTGTTTTGATATTGTCTTTAAAGGAGGAAAGGGAGAAGATGATATCTCCATGTATCCTTTCTTTTTCTGTTGAGGATTCTTGGGAGGGAGTCTCACATTGGCTATAATTAAAGAGATGATGATGGGTTTATAGGTAAGGAATATATCTCCATTGATATGAGTCATGAGAGCTTATGCTCAAAGTTGACAATAACATACCATTGTAGAGGTCTGCAATCCCTATCATGGTATCAGAGTCATGCTCTTAACAGCCATACTAATCGAATCCTCAAGTGTCGAACAAAGTGTGTACTTCTGGAGCCGAGCCTTGATAAATGGAGACTGTTTGAGGGCTACATAGGTCTTAAGGGAGACGTTATGATGTACTTTGGAGGAAGATTGTTGATGATTATTGGGAGGGAGTCCCACATTGTAATTAAGGGGATGATCATGGATTTATAAGTAAGGAATATATCTCTGTTGGTATGAGGCCTTTTGGGGAAACCAAAAGTAAAGCCACGAGAGCATATAATCAAAGTAGACAATATCATACCATTATGGAGGTTCGTGATTCCTAACATTTTTTGGTAGTAAAACCGGGAGACCGGCCTGGAAAATGGTTATAGGCTTAGGACTTTTCTCTGTGCTATGCATATACTGTTACCCTTGCACTCTTATGACAAGCTAAGTTGCTAAACCTCTAAACCGATTTCAATCGAGCTTCCGCTTAAGAGAGCCCAATTTTGATCATAGCTTTATTGTTAGATGAAATGTCTGCTTCTAATCCAAAATGTTTATGATTGTAGCTCAAAAAAGATTTTAGCAGTGATATTGCATCTGTAGAAGCTGCAATCAGGGGGCTTGTTCCTACTTCCTCCTGCAGTCATGCCGATCTTACCAGCCTTTTTCGATTAGCTGCTCATGAAGCTAGAAAGTCGACCGCTCAGAATCATATTCTAAGAGTGGTATGCTCATTATACCAATACTCGTAATCTGTCGATTCAGCTCAAAGAATATATCATTGTTCTGAAATTAGAACTCCGTATGTTCCAATGAATGCTTGAAAAATCATGTTCATAACCATTGTTGCATTTAGATTCTTATATATTGTAGATCATCAACACGACCACAACATCAATGGCCTGTGAACCAAAAACTCTTCACTTTAGATGTTATCTATCTCCATGAGAAGCCTGGACCAGACAACTGCCCACAGGAGGTCTACGATGCCTTAGTTGATGCCCTTGATCTTGTCAGCCAGTATGAAGGCTATATTTTCGAGAGCGGCCAGGGAGTTGCACGTGTTCTTTACCGTTGCATGTGCTTGTTGTTATCGCACCCCCAGCAGCGAATATCACTAGACGATCTCAACATACCAAAGCTTCTTACAAAGAAAGTACCTCCAGCTGATTCCATCCCTGCAAACGAAGTTGTCCCTGTTACCAGCCAGTGAGACGAAGGGCTTAAAACAATAGAGGAAAACTGGATGCTGTTGTTATTGCTGCTGTAGCTTAATGGTACCTCACTCTTCAGTAATCTGATGCTTCTCTCTCTTTTTTTTTCATGGTTACAGATTAAGTCTTGTTTATTGTACATATAGACAAGTTTACGACGAGAGAGACGACGCTTAATGGTACCGTATTCAACTTTGTTATGCTCTTATTTGCTCAGAATGTCGTATATTTTTATGAATCATATTACACGTTGGTACAATCCTTCTAGGTATCATAAGGTCTGTTTAACTCGTAAGATATTAAATTCTAT

mRNA sequence

TTAACTCGACACGACATCATTTCTGTGTTGCAATTTGCAGAGAGCGACGGCGAGAACCATGGAGGGTATGGAAGGGGAGAGAGGAGGAAGCCGATACTCACTGAAGCCATCGAGAATTAACAACGAAGACATTCTGTTCTGCATAGATGTGAACCCCGAATCCTCCGTCGAGATCAAAACCACCGGCTCTAATGGACGACCTATCACCAGAATGGACTCCATTAAGCAAGCAATTCTTCTCTTCGTCCACGCCAAACTCTCCATGAATCCCGACCACCGATTTGCCTTCACCACCATCGCCAAATCTGCCACTTGGCTCAAAAAAGATTTTAGCAGTGATATTGCATCTGTAGAAGCTGCAATCAGGGGGCTTGTTCCTACTTCCTCCTGCAGTCATGCCGATCTTACCAGCCTTTTTCGATTAGCTGCTCATGAAGCTAGAAAGTCGACCGCTCAGAATCATATTCTAAGAGTGATTCTTATATATTGTAGATCATCAACACGACCACAACATCAATGGCCTGTGAACCAAAAACTCTTCACTTTAGATGTTATCTATCTCCATGAGAAGCCTGGACCAGACAACTGCCCACAGGAGGTCTACGATGCCTTAGTTGATGCCCTTGATCTTGTCAGCCAGTATGAAGGCTATATTTTCGAGAGCGGCCAGGGAGTTGCACGTGTTCTTTACCGTTGCATGTGCTTGTTGTTATCGCACCCCCAGCAGCGAATATCACTAGACGATCTCAACATACCAAAGCTTCTTACAAAGAAAGTACCTCCAGCTGATTCCATCCCTGCAAACGAAGTTGTCCCTGTTACCAGCCAGTGAGACGAAGGGCTTAAAACAATAGAGGAAAACTGGATGCTGTTGTTATTGCTGCTGTAGCTTAATGGTACCTCACTCTTCAGTAATCTGATGCTTCTCTCTCTTTTTTTTTCATGGTTACAGATTAAGTCTTGTTTATTGTACATATAGACAAGTTTACGACGAGAGAGACGACGCTTAATGGTACCGTATTCAACTTTGTTATGCTCTTATTTGCTCAGAATGTCGTATATTTTTATGAATCATATTACACGTTGGTACAATCCTTCTAGGTATCATAAGGTCTGTTTAACTCGTAAGATATTAAATTCTAT

Coding sequence (CDS)

ATGGAGGGTATGGAAGGGGAGAGAGGAGGAAGCCGATACTCACTGAAGCCATCGAGAATTAACAACGAAGACATTCTGTTCTGCATAGATGTGAACCCCGAATCCTCCGTCGAGATCAAAACCACCGGCTCTAATGGACGACCTATCACCAGAATGGACTCCATTAAGCAAGCAATTCTTCTCTTCGTCCACGCCAAACTCTCCATGAATCCCGACCACCGATTTGCCTTCACCACCATCGCCAAATCTGCCACTTGGCTCAAAAAAGATTTTAGCAGTGATATTGCATCTGTAGAAGCTGCAATCAGGGGGCTTGTTCCTACTTCCTCCTGCAGTCATGCCGATCTTACCAGCCTTTTTCGATTAGCTGCTCATGAAGCTAGAAAGTCGACCGCTCAGAATCATATTCTAAGAGTGATTCTTATATATTGTAGATCATCAACACGACCACAACATCAATGGCCTGTGAACCAAAAACTCTTCACTTTAGATGTTATCTATCTCCATGAGAAGCCTGGACCAGACAACTGCCCACAGGAGGTCTACGATGCCTTAGTTGATGCCCTTGATCTTGTCAGCCAGTATGAAGGCTATATTTTCGAGAGCGGCCAGGGAGTTGCACGTGTTCTTTACCGTTGCATGTGCTTGTTGTTATCGCACCCCCAGCAGCGAATATCACTAGACGATCTCAACATACCAAAGCTTCTTACAAAGAAAGTACCTCCAGCTGATTCCATCCCTGCAAACGAAGTTGTCCCTGTTACCAGCCAGTGA
Homology
[Close]
BLAST of CmoCh01G017650 vs. TrEMBL
Match: A0A0A0L024_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G645930 PE=4 SV=1)

HSP 1 Score: 465.7 bits (1197), Expect = 3.7e-128
Identity = 230/257 (89.49%), Postives = 241/257 (93.77%), Query Frame = 1 

Query: 1   MEGMEGERGGSRYSLKPSRINNEDILFCIDVNPESSVEIKTTGSNGRPITRMDSIKQAIL 60
           ME +E ERGGS YSLK SR+NNEDILFCIDVNPESSVEIKTTGSNGRPITRMDSIKQAIL
Sbjct: 1   MEAIEVERGGSGYSLKSSRLNNEDILFCIDVNPESSVEIKTTGSNGRPITRMDSIKQAIL 60

Query: 61  LFVHAKLSMNPDHRFAFTTIAKSATWLKKDFSSDIASVEAAIRGLVPTSSCSHADLTSLF 120
           LFVHAKLSMNPDHRFAFTTIAKSA WLKK+FSSDIAS EAA+RGL  TS C+HADLTSLF
Sbjct: 61  LFVHAKLSMNPDHRFAFTTIAKSAIWLKKEFSSDIASAEAAVRGLGATSPCNHADLTSLF 120

Query: 121 RLAAHEARKSTAQNHILRVILIYCRSSTRPQHQWPVNQKLFTLDVIYLHEKPGPDNCPQE 180
           RLAAHE+RKSTAQN ILR+ILIYCRSST+PQHQWP NQKLFT DVIYLHEKPGPDNCPQE
Sbjct: 121 RLAAHESRKSTAQNRILRLILIYCRSSTQPQHQWPANQKLFTFDVIYLHEKPGPDNCPQE 180

Query: 181 VYDALVDALDLVSQYEGYIFESGQGVARVLYRCMCLLLSHPQQRISLDDLNIPKLLTKKV 240
           VYDALVDALD VSQYEGYIFESGQGVARVLYRCMCLLLSHPQQRISLDDL+IPK LTKK+
Sbjct: 181 VYDALVDALDHVSQYEGYIFESGQGVARVLYRCMCLLLSHPQQRISLDDLDIPKPLTKKL 240

Query: 241 PPADSIPANEVVPVTSQ 258
           PPAD+ P NEVVPVTSQ
Sbjct: 241 PPADTAPPNEVVPVTSQ 257

[Close]
BLAST of CmoCh01G017650 vs. TrEMBL
Match: A0A067GX29_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g025034mg PE=4 SV=1)

HSP 1 Score: 375.9 bits (964), Expect = 3.8e-101
Identity = 179/257 (69.65%), Postives = 221/257 (85.99%), Query Frame = 1 

Query: 1   MEGMEGERGGS-RYSLKPSRINNEDILFCIDVNPESSVEIKTTGSNGRPITRMDSIKQAI 60
           MEG+EGE  G+ R++L P RI+NEDI+FC+DV+ ES VE+K+TG NG+PITR+D++KQAI
Sbjct: 1   MEGIEGESSGAGRFTLPPMRISNEDIIFCVDVDAESLVEMKSTGFNGKPITRLDAMKQAI 60

Query: 61  LLFVHAKLSMNPDHRFAFTTIAKSATWLKKDFSSDIASVEAAIRGLVPTSSCSHADLTSL 120
           LLFV++KLS+NPDHRFAF T+AK+A+WL+K+FSSDI S   A+RG+  TS+C  ADLT L
Sbjct: 61  LLFVNSKLSINPDHRFAFVTLAKTASWLRKEFSSDIESTLTAVRGISATSACGQADLTHL 120

Query: 121 FRLAAHEARKSTAQNHILRVILIYCRSSTRPQHQWPVNQKLFTLDVIYLHEKPGPDNCPQ 180
           F+LA+HEA+KS AQN ILRVILIYCRSS RPQHQWPVNQKLFT+DV+YLH+KPGPDNCPQ
Sbjct: 121 FKLASHEAKKSRAQNRILRVILIYCRSSVRPQHQWPVNQKLFTMDVLYLHDKPGPDNCPQ 180

Query: 181 EVYDALVDALDLVSQYEGYIFESGQGVARVLYRCMCLLLSHPQQRISLDDLNIPKLLTKK 240
           +VYDALVDAL+ VS+ EGYIFESGQG+AR+L+R MC+LLSHPQQR   DD++IPK L KK
Sbjct: 181 KVYDALVDALEHVSENEGYIFESGQGLARILFRQMCVLLSHPQQRCVQDDVDIPKSLVKK 240

Query: 241 VPPADSIPANEVVPVTS 257
            P AD+    + VPVTS
Sbjct: 241 SPAADTTNGEDTVPVTS 257

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BLAST of CmoCh01G017650 vs. TrEMBL
Match: V4TU34_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10009241mg PE=4 SV=1)

HSP 1 Score: 374.4 bits (960), Expect = 1.1e-100
Identity = 179/257 (69.65%), Postives = 220/257 (85.60%), Query Frame = 1 

Query: 1   MEGMEGERGGS-RYSLKPSRINNEDILFCIDVNPESSVEIKTTGSNGRPITRMDSIKQAI 60
           MEG+EGE  G+ R +L P RI+NEDI+FC+DV+ ES VE+K+TG NG+PITR+D++KQAI
Sbjct: 1   MEGIEGESSGAGRLTLPPMRISNEDIIFCVDVDAESLVEMKSTGFNGKPITRLDAMKQAI 60

Query: 61  LLFVHAKLSMNPDHRFAFTTIAKSATWLKKDFSSDIASVEAAIRGLVPTSSCSHADLTSL 120
           LLFV++KLS+NPDHRFAF T+AK+A+WL+K+FSSDI S   A+RG+  TS+C  ADLT L
Sbjct: 61  LLFVNSKLSINPDHRFAFVTLAKTASWLRKEFSSDIESTLTAVRGISATSACGQADLTHL 120

Query: 121 FRLAAHEARKSTAQNHILRVILIYCRSSTRPQHQWPVNQKLFTLDVIYLHEKPGPDNCPQ 180
           F+LA+HEA+KS AQN ILRVILIYCRSS RPQHQWPVNQKLFT+DV+YLH+KPGPDNCPQ
Sbjct: 121 FKLASHEAKKSRAQNRILRVILIYCRSSARPQHQWPVNQKLFTMDVLYLHDKPGPDNCPQ 180

Query: 181 EVYDALVDALDLVSQYEGYIFESGQGVARVLYRCMCLLLSHPQQRISLDDLNIPKLLTKK 240
           +VYDALVDAL+ VS+ EGYIFESGQG+AR+L+R MC+LLSHPQQR   DD++IPK L KK
Sbjct: 181 KVYDALVDALEHVSENEGYIFESGQGLARILFRQMCVLLSHPQQRCVQDDVDIPKSLVKK 240

Query: 241 VPPADSIPANEVVPVTS 257
            P AD+    + VPVTS
Sbjct: 241 SPAADTTNGEDTVPVTS 257

[Close]
BLAST of CmoCh01G017650 vs. TrEMBL
Match: A0A067KDB2_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07693 PE=4 SV=1)

HSP 1 Score: 361.3 bits (926), Expect = 9.7e-97
Identity = 176/257 (68.48%), Postives = 212/257 (82.49%), Query Frame = 1 

Query: 1   MEGMEGERGGSRYSLKPSRINNEDILFCIDVNPESSVEIKTTGSNGRPITRMDSIKQAIL 60
           +E  EG  G  RY+LKP+RIN+EDILFCIDV+ ES VE+KTTG  GRP+TR+DSIKQAIL
Sbjct: 4   VEAAEGS-GRGRYALKPTRINSEDILFCIDVDTESLVEMKTTGPTGRPLTRLDSIKQAIL 63

Query: 61  LFVHAKLSMNPDHRFAFTTIAKSATWLKKDFSSDIASVEAAIRGLVPTSSCSHADLTSLF 120
           LF++ KLS+NPDHRFAF T+AKSA+WL+K+FSSD+ S   A+R L  TSSC  ADLT LF
Sbjct: 64  LFINTKLSINPDHRFAFATLAKSASWLRKEFSSDVESAVTALRRLGATSSCGQADLTQLF 123

Query: 121 RLAAHEARKSTAQNHILRVILIYCRSSTRPQHQWPVNQKLFTLDVIYLHEKPGPDNCPQE 180
           R+AAHEA+KS AQN ILRVIL YCRSS RP HQWP+NQKLFTLDV+YLH+KPGPDNCPQE
Sbjct: 124 RIAAHEAKKSHAQNRILRVILFYCRSSVRPHHQWPINQKLFTLDVMYLHDKPGPDNCPQE 183

Query: 181 VYDALVDALDLVSQYEGYIFESGQGVARVLYRCMCLLLSHPQQRISLDDLNIPKLLTKKV 240
           VYDALVD L+ VS+YEG+I+E+GQG+ R+L R + +LLSHPQQR   DD++IPK LTK+ 
Sbjct: 184 VYDALVDTLEHVSEYEGFIYETGQGL-RILLRYLSVLLSHPQQRCPQDDMDIPKSLTKRS 243

Query: 241 PPADSIPANEVVPVTSQ 258
           P  DS    + VPV+SQ
Sbjct: 244 PAGDSANGEDSVPVSSQ 258

[Close]
BLAST of CmoCh01G017650 vs. TrEMBL
Match: A0A059CTV1_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_C03005 PE=4 SV=1)

HSP 1 Score: 361.3 bits (926), Expect = 9.7e-97
Identity = 175/261 (67.05%), Postives = 209/261 (80.08%), Query Frame = 1 

Query: 1   MEGMEGERGG----SRYSLKPSRINNEDILFCIDVNPESSVEIKTTGSNGRPITRMDSIK 60
           MEG+EG+        RY L P+RI++EDILFC+DV+ ES VE+K TG  GRP  R+D+IK
Sbjct: 28  MEGVEGDAAAVAAAPRYVLNPARISSEDILFCVDVDAESLVEMKVTGPGGRPFARLDAIK 87

Query: 61  QAILLFVHAKLSMNPDHRFAFTTIAKSATWLKKDFSSDIASVEAAIRGLVPTSSCSHADL 120
           Q++LLFVH+KL++NPDHRFAF T++KSA WL+K+FSSD+ S  AAIR L  TS+C HADL
Sbjct: 88  QSLLLFVHSKLAINPDHRFAFATLSKSAAWLRKEFSSDVESAAAAIRSLSATSACGHADL 147

Query: 121 TSLFRLAAHEARKSTAQNHILRVILIYCRSSTRPQHQWPVNQKLFTLDVIYLHEKPGPDN 180
           T LFR+AAHEA+KS  QN I RVILIYCRSS +PQHQWPVNQKLFTLDVIYLH+KPGPDN
Sbjct: 148 TQLFRIAAHEAKKSRMQNRIFRVILIYCRSSIQPQHQWPVNQKLFTLDVIYLHDKPGPDN 207

Query: 181 CPQEVYDALVDALDLVSQYEGYIFESGQGVARVLYRCMCLLLSHPQQRISLDDLNIPKLL 240
           CPQ+VYDALVDAL+ VS+YEG+I ESGQG+ R+L+R MC+LL HPQQR   D L+IPK L
Sbjct: 208 CPQQVYDALVDALEHVSEYEGHIHESGQGLTRILFRHMCMLLLHPQQRCPQDYLDIPKSL 267

Query: 241 TKKVPPADSIPANEVVPVTSQ 258
            KK P ADS PA E   V  Q
Sbjct: 268 VKKSPAADSAPAEESAIVPRQ 288

[Close]
BLAST of CmoCh01G017650 vs. TAIR10
Match: AT4G32960.1 (AT4G32960.1 unknown protein)

HSP 1 Score: 334.7 bits (857), Expect = 4.9e-92
Identity = 163/251 (64.94%), Postives = 200/251 (79.68%), Query Frame = 1 

Query: 4   MEGER------GGSRYSLKPSRINNEDILFCIDVNPESSVEIKTTGSNGRPITRMDSIKQ 63
           ME ER      G +RY+LKP RI +EDIL CIDV+ ES VE+KTTG+NGRP+ RM+ +KQ
Sbjct: 1   MEEERVAVTGVGTTRYALKPGRIKSEDILICIDVDAESMVEMKTTGTNGRPLIRMECVKQ 60

Query: 64  AILLFVHAKLSMNPDHRFAFTTIAKSATWLKKDFSSDIASVEAAIRGLVPTSSCSHADLT 123
           AI+LF+H KLS+NPDHRFAF T+AKSA WLKK+F+SD  S  A++RGL    S S ADLT
Sbjct: 61  AIILFIHNKLSINPDHRFAFATLAKSAAWLKKEFTSDAESAVASLRGLSGNKSSSRADLT 120

Query: 124 SLFRLAAHEARKSTAQNHILRVILIYCRSSTRPQHQWPVNQKLFTLDVIYLHEKPGPDNC 183
            LFR AA EA+ S AQN I RVILIYCRSS RP H+WP+NQKLFTLDV+YLH+KP PDNC
Sbjct: 121 LLFRAAAQEAKVSRAQNRIFRVILIYCRSSMRPTHEWPLNQKLFTLDVMYLHDKPSPDNC 180

Query: 184 PQEVYDALVDALDLVSQYEGYIFESGQGVARVLYRCMCLLLSHPQQRISLDDLNIPKLLT 243
           PQ+VYD+LVDA++ VS+YEGYIFESGQG+AR +++ M +LL+HPQQR + DDL+IP  L 
Sbjct: 181 PQDVYDSLVDAVEHVSEYEGYIFESGQGLARSVFKPMSMLLTHPQQRCAQDDLDIPMSLA 240

Query: 244 KKVPPADSIPA 249
           KKVP  ++  A
Sbjct: 241 KKVPVTEAASA 251

[Close]
BLAST of CmoCh01G017650 vs. TAIR10
Match: AT4G32970.1 (AT4G32970.1 unknown protein)

HSP 1 Score: 270.0 bits (689), Expect = 1.5e-72
Identity = 133/229 (58.08%), Postives = 172/229 (75.11%), Query Frame = 1 

Query: 11  SRYSLKPSRINNEDILFCIDVNPESSVEIKTTGSNGRPITRMDSIKQAILLFVHAKLSMN 70
           +R S++PS    EDIL C+DV+ ES+VE+KTTG+NG+P+ R++ +K AI  F+H KLS N
Sbjct: 14  TRDSVEPS----EDILICVDVDAESTVEMKTTGTNGKPLNRLECLKLAITRFIHDKLSRN 73

Query: 71  PDHRFAFTTIAKSATWLKKDFSSDIASVEAAIRGLVPTSSCSHADLTSLFRLAAHEARKS 130
            DHRFAF T+++SA WLKK+FS+D  S  A++R +  T S   ADLT LF+ AA EA+ S
Sbjct: 74  SDHRFAFATLSQSAAWLKKEFSNDAKSAAASLREMSATRSSGPADLTFLFQEAAQEAKTS 133

Query: 131 TAQNHILRVILIYCRSSTRPQHQWPVNQKLFTLDVIYLHEKPGPDNCPQEVYDALVDALD 190
            AQN ILRVIL+YCRSS RP H WP+NQKLFTLDV+YLH+K GPDNC  +VYD+LVDA++
Sbjct: 134 RAQNRILRVILMYCRSSVRPTHDWPINQKLFTLDVMYLHDKSGPDNCTHDVYDSLVDAIE 193

Query: 191 LVSQYEGYIFESGQGVARVLYRCMCLLLSHPQQRISLDDLNIPKLLTKK 240
            VS+YEGYIFE   G+++ ++R M  LLSHP QR +  DL  PK   KK
Sbjct: 194 RVSEYEGYIFEGSHGLSQSVFRRMSTLLSHPPQRCAQVDL--PKPPAKK 236

[Close]
BLAST of CmoCh01G017650 vs. NCBI nr
Match: gi|659103787|ref|XP_008452703.1| (PREDICTED: uncharacterized protein LOC103493644 [Cucumis melo])

HSP 1 Score: 471.5 bits (1212), Expect = 9.6e-130
Identity = 233/257 (90.66%), Postives = 242/257 (94.16%), Query Frame = 1 

Query: 1   MEGMEGERGGSRYSLKPSRINNEDILFCIDVNPESSVEIKTTGSNGRPITRMDSIKQAIL 60
           ME +E ERGGS YSLKPSR+NNEDILFCIDVNPESSVEIKTTGSNGRPITRMDSIKQAIL
Sbjct: 1   MEAIEVERGGSGYSLKPSRLNNEDILFCIDVNPESSVEIKTTGSNGRPITRMDSIKQAIL 60

Query: 61  LFVHAKLSMNPDHRFAFTTIAKSATWLKKDFSSDIASVEAAIRGLVPTSSCSHADLTSLF 120
           LFVHAKLSMNPDHRFAFTTIAKSA WLKK+FSSDIAS EAA+RGL  TS C+HADLTSLF
Sbjct: 61  LFVHAKLSMNPDHRFAFTTIAKSAIWLKKEFSSDIASAEAAVRGLGATSPCNHADLTSLF 120

Query: 121 RLAAHEARKSTAQNHILRVILIYCRSSTRPQHQWPVNQKLFTLDVIYLHEKPGPDNCPQE 180
           RLAAHE+RKSTAQN ILR+ILIYCRSSTRPQHQWP NQKLFT DVIYLHEKPGPDNCPQE
Sbjct: 121 RLAAHESRKSTAQNRILRLILIYCRSSTRPQHQWPANQKLFTFDVIYLHEKPGPDNCPQE 180

Query: 181 VYDALVDALDLVSQYEGYIFESGQGVARVLYRCMCLLLSHPQQRISLDDLNIPKLLTKKV 240
           VYDALVDALD VSQYEGYIFESGQGVARVLYRCMCLLLSHPQQRISLDDL+IPK LTKK+
Sbjct: 181 VYDALVDALDHVSQYEGYIFESGQGVARVLYRCMCLLLSHPQQRISLDDLDIPKPLTKKL 240

Query: 241 PPADSIPANEVVPVTSQ 258
           PPADS P NEVVPVTSQ
Sbjct: 241 PPADSTPPNEVVPVTSQ 257

[Close]
BLAST of CmoCh01G017650 vs. NCBI nr
Match: gi|449447101|ref|XP_004141308.1| (PREDICTED: BRISC and BRCA1-A complex member 1 [Cucumis sativus])

HSP 1 Score: 465.7 bits (1197), Expect = 5.3e-128
Identity = 230/257 (89.49%), Postives = 241/257 (93.77%), Query Frame = 1 

Query: 1   MEGMEGERGGSRYSLKPSRINNEDILFCIDVNPESSVEIKTTGSNGRPITRMDSIKQAIL 60
           ME +E ERGGS YSLK SR+NNEDILFCIDVNPESSVEIKTTGSNGRPITRMDSIKQAIL
Sbjct: 1   MEAIEVERGGSGYSLKSSRLNNEDILFCIDVNPESSVEIKTTGSNGRPITRMDSIKQAIL 60

Query: 61  LFVHAKLSMNPDHRFAFTTIAKSATWLKKDFSSDIASVEAAIRGLVPTSSCSHADLTSLF 120
           LFVHAKLSMNPDHRFAFTTIAKSA WLKK+FSSDIAS EAA+RGL  TS C+HADLTSLF
Sbjct: 61  LFVHAKLSMNPDHRFAFTTIAKSAIWLKKEFSSDIASAEAAVRGLGATSPCNHADLTSLF 120

Query: 121 RLAAHEARKSTAQNHILRVILIYCRSSTRPQHQWPVNQKLFTLDVIYLHEKPGPDNCPQE 180
           RLAAHE+RKSTAQN ILR+ILIYCRSST+PQHQWP NQKLFT DVIYLHEKPGPDNCPQE
Sbjct: 121 RLAAHESRKSTAQNRILRLILIYCRSSTQPQHQWPANQKLFTFDVIYLHEKPGPDNCPQE 180

Query: 181 VYDALVDALDLVSQYEGYIFESGQGVARVLYRCMCLLLSHPQQRISLDDLNIPKLLTKKV 240
           VYDALVDALD VSQYEGYIFESGQGVARVLYRCMCLLLSHPQQRISLDDL+IPK LTKK+
Sbjct: 181 VYDALVDALDHVSQYEGYIFESGQGVARVLYRCMCLLLSHPQQRISLDDLDIPKPLTKKL 240

Query: 241 PPADSIPANEVVPVTSQ 258
           PPAD+ P NEVVPVTSQ
Sbjct: 241 PPADTAPPNEVVPVTSQ 257

[Close]
BLAST of CmoCh01G017650 vs. NCBI nr
Match: gi|568844158|ref|XP_006475962.1| (PREDICTED: uncharacterized protein LOC102611871 [Citrus sinensis])

HSP 1 Score: 375.9 bits (964), Expect = 5.5e-101
Identity = 179/257 (69.65%), Postives = 221/257 (85.99%), Query Frame = 1 

Query: 1   MEGMEGERGGS-RYSLKPSRINNEDILFCIDVNPESSVEIKTTGSNGRPITRMDSIKQAI 60
           MEG+EGE  G+ R++L P RI+NEDI+FC+DV+ ES VE+K+TG NG+PITR+D++KQAI
Sbjct: 1   MEGIEGESSGAGRFTLPPMRISNEDIIFCVDVDAESLVEMKSTGFNGKPITRLDAMKQAI 60

Query: 61  LLFVHAKLSMNPDHRFAFTTIAKSATWLKKDFSSDIASVEAAIRGLVPTSSCSHADLTSL 120
           LLFV++KLS+NPDHRFAF T+AK+A+WL+K+FSSDI S   A+RG+  TS+C  ADLT L
Sbjct: 61  LLFVNSKLSINPDHRFAFVTLAKTASWLRKEFSSDIESTLTAVRGISATSACGQADLTHL 120

Query: 121 FRLAAHEARKSTAQNHILRVILIYCRSSTRPQHQWPVNQKLFTLDVIYLHEKPGPDNCPQ 180
           F+LA+HEA+KS AQN ILRVILIYCRSS RPQHQWPVNQKLFT+DV+YLH+KPGPDNCPQ
Sbjct: 121 FKLASHEAKKSRAQNRILRVILIYCRSSVRPQHQWPVNQKLFTMDVLYLHDKPGPDNCPQ 180

Query: 181 EVYDALVDALDLVSQYEGYIFESGQGVARVLYRCMCLLLSHPQQRISLDDLNIPKLLTKK 240
           +VYDALVDAL+ VS+ EGYIFESGQG+AR+L+R MC+LLSHPQQR   DD++IPK L KK
Sbjct: 181 KVYDALVDALEHVSENEGYIFESGQGLARILFRQMCVLLSHPQQRCVQDDVDIPKSLVKK 240

Query: 241 VPPADSIPANEVVPVTS 257
            P AD+    + VPVTS
Sbjct: 241 SPAADTTNGEDTVPVTS 257

[Close]
BLAST of CmoCh01G017650 vs. NCBI nr
Match: gi|567917584|ref|XP_006450798.1| (hypothetical protein CICLE_v10009241mg [Citrus clementina])

HSP 1 Score: 374.4 bits (960), Expect = 1.6e-100
Identity = 179/257 (69.65%), Postives = 220/257 (85.60%), Query Frame = 1 

Query: 1   MEGMEGERGGS-RYSLKPSRINNEDILFCIDVNPESSVEIKTTGSNGRPITRMDSIKQAI 60
           MEG+EGE  G+ R +L P RI+NEDI+FC+DV+ ES VE+K+TG NG+PITR+D++KQAI
Sbjct: 1   MEGIEGESSGAGRLTLPPMRISNEDIIFCVDVDAESLVEMKSTGFNGKPITRLDAMKQAI 60

Query: 61  LLFVHAKLSMNPDHRFAFTTIAKSATWLKKDFSSDIASVEAAIRGLVPTSSCSHADLTSL 120
           LLFV++KLS+NPDHRFAF T+AK+A+WL+K+FSSDI S   A+RG+  TS+C  ADLT L
Sbjct: 61  LLFVNSKLSINPDHRFAFVTLAKTASWLRKEFSSDIESTLTAVRGISATSACGQADLTHL 120

Query: 121 FRLAAHEARKSTAQNHILRVILIYCRSSTRPQHQWPVNQKLFTLDVIYLHEKPGPDNCPQ 180
           F+LA+HEA+KS AQN ILRVILIYCRSS RPQHQWPVNQKLFT+DV+YLH+KPGPDNCPQ
Sbjct: 121 FKLASHEAKKSRAQNRILRVILIYCRSSARPQHQWPVNQKLFTMDVLYLHDKPGPDNCPQ 180

Query: 181 EVYDALVDALDLVSQYEGYIFESGQGVARVLYRCMCLLLSHPQQRISLDDLNIPKLLTKK 240
           +VYDALVDAL+ VS+ EGYIFESGQG+AR+L+R MC+LLSHPQQR   DD++IPK L KK
Sbjct: 181 KVYDALVDALEHVSENEGYIFESGQGLARILFRQMCVLLSHPQQRCVQDDVDIPKSLVKK 240

Query: 241 VPPADSIPANEVVPVTS 257
            P AD+    + VPVTS
Sbjct: 241 SPAADTTNGEDTVPVTS 257

[Close]
BLAST of CmoCh01G017650 vs. NCBI nr
Match: gi|1009134342|ref|XP_015884395.1| (PREDICTED: uncharacterized protein LOC107420052 [Ziziphus jujuba])

HSP 1 Score: 374.0 bits (959), Expect = 2.1e-100
Identity = 183/258 (70.93%), Postives = 221/258 (85.66%), Query Frame = 1 

Query: 1   MEGMEGER-GGSRYSLKPSRINNEDILFCIDVNPESSVEIKTTGSNGRPITRMDSIKQAI 60
           MEGMEG+R GGSRY+L+PSRI+NEDILFCIDV+PES VE+K +G NGRP+TR+DSIKQ+I
Sbjct: 1   MEGMEGDRSGGSRYTLRPSRISNEDILFCIDVDPESLVEMKISGPNGRPLTRLDSIKQSI 60

Query: 61  LLFVHAKLSMNPDHRFAFTTIAKSATWLKKDFSSDIASVEAAIRGLVPTSSCSHADLTSL 120
           LLF++AKL++NP+HRFAF T+ KSA+WL+K+FSS++ S  AA RGL  TSS  HADLT+L
Sbjct: 61  LLFINAKLTINPEHRFAFATLDKSASWLRKEFSSEVESAIAAFRGLSTTSSGGHADLTAL 120

Query: 121 FRLAAHEARKSTAQNHILRVILIYCRSSTRPQHQWPVNQKLFTLDVIYLHEKPGPDNCPQ 180
           FR+AAHEA+KS AQN I RVIL YCRSS RPQHQWPVNQKLFTLDV+YLH+KP PDNCPQ
Sbjct: 121 FRVAAHEAKKSRAQNRIFRVILFYCRSSIRPQHQWPVNQKLFTLDVVYLHDKPAPDNCPQ 180

Query: 181 EVYDALVDALDLVSQYEGYIFESGQGVARVLYRCMCLLLSHPQQRISLDDLNIPKLLTKK 240
            VYDALVDAL+ VS+YEGYI ESGQG+ARVL+R   +LLSHPQQR + D L+IPK LTKK
Sbjct: 181 VVYDALVDALEHVSEYEGYILESGQGLARVLFRFTYILLSHPQQRCAQDHLDIPKSLTKK 240

Query: 241 VPPADSIPANEVVPVTSQ 258
              +DS+P + +  V+SQ
Sbjct: 241 ATSSDSMPEDSIT-VSSQ 257

The following BLAST results are available for this feature:
BLAST of CmoCh01G017650 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh01G017650 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L024_CUCSA3.7e-12889.49Uncharacterized protein OS=Cucumis sativus GN=Csa_4G645930 PE=4 SV=1[more]
A0A067GX29_CITSI3.8e-10169.65Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g025034mg PE=4 SV=1[more]
V4TU34_9ROSI1.1e-10069.65Uncharacterized protein OS=Citrus clementina GN=CICLE_v10009241mg PE=4 SV=1[more]
A0A067KDB2_JATCU9.7e-9768.48Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07693 PE=4 SV=1[more]
A0A059CTV1_EUCGR9.7e-9767.05Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_C03005 PE=4 SV=1[more]
BLAST of CmoCh01G017650 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G32960.14.9e-9264.94 unknown protein[more]
AT4G32970.11.5e-7258.08 unknown protein[more]
BLAST of CmoCh01G017650 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659103787|ref|XP_008452703.1|9.6e-13090.66PREDICTED: uncharacterized protein LOC103493644 [Cucumis melo][more]
gi|449447101|ref|XP_004141308.1|5.3e-12889.49PREDICTED: BRISC and BRCA1-A complex member 1 [Cucumis sativus][more]
gi|568844158|ref|XP_006475962.1|5.5e-10169.65PREDICTED: uncharacterized protein LOC102611871 [Citrus sinensis][more]
gi|567917584|ref|XP_006450798.1|1.6e-10069.65hypothetical protein CICLE_v10009241mg [Citrus clementina][more]
gi|1009134342|ref|XP_015884395.1|2.1e-10070.93PREDICTED: uncharacterized protein LOC107420052 [Ziziphus jujuba][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR002035VWF_A
IPR026126BABAM1
Vocabulary: Biological Process
TermDefinition
GO:0045739positive regulation of DNA repair
Vocabulary: Cellular Component
TermDefinition
GO:0070531BRCA1-A complex
GO:0070552BRISC complex
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0045739 positive regulation of DNA repair
cellular_component GO:0070531 BRCA1-A complex
cellular_component GO:0070552 BRISC complex
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh01G017650.1CmoCh01G017650.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002035von Willebrand factor, type AunknownSSF53300vWA-likecoord: 25..142
score: 1.0
IPR026126BRISC and BRCA1-A complex member 1PANTHERPTHR15660UNCHARACTERIZEDcoord: 11..257
score: 2.2E
NoneNo IPR availablePANTHERPTHR15660:SF1BRISC AND BRCA1-A COMPLEX MEMBER 1coord: 11..257
score: 2.2E

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh01G017650Cucsa.353230Cucumber (Gy14) v1cgycmoB0965
CmoCh01G017650CmaCh01G017450Cucurbita maxima (Rimu)cmacmoB470
CmoCh01G017650Cla020890Watermelon (97103) v1cmowmB429
CmoCh01G017650Csa4G645930Cucumber (Chinese Long) v2cmocuB453
CmoCh01G017650MELO3C016858Melon (DHL92) v3.5.1cmomeB435
CmoCh01G017650ClCG05G017740Watermelon (Charleston Gray)cmowcgB408
CmoCh01G017650CSPI04G25200Wild cucumber (PI 183967)cmocpiB457
CmoCh01G017650Cp4.1LG02g06170Cucurbita pepo (Zucchini)cmocpeB445
CmoCh01G017650MELO3C016858.2Melon (DHL92) v3.6.1cmomedB499
CmoCh01G017650CsaV3_4G035510Cucumber (Chinese Long) v3cmocucB0541
CmoCh01G017650Cla97C05G099030Watermelon (97103) v2cmowmbB456
CmoCh01G017650Bhi09G002596Wax gourdcmowgoB0617
CmoCh01G017650CsGy4G023490Cucumber (Gy14) v2cgybcmoB475
CmoCh01G017650Carg10680Silver-seed gourdcarcmoB1043
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh01G017650Cucurbita pepo (Zucchini)cmocpeB462
CmoCh01G017650Bottle gourd (USVL1VR-Ls)cmolsiB422
CmoCh01G017650Cucumber (Gy14) v2cgybcmoB926
CmoCh01G017650Melon (DHL92) v3.6.1cmomedB455
CmoCh01G017650Silver-seed gourdcarcmoB0442
CmoCh01G017650Wax gourdcmowgoB0629
CmoCh01G017650Cucurbita moschata (Rifu)cmocmoB014
CmoCh01G017650Cucurbita moschata (Rifu)cmocmoB020
CmoCh01G017650Cucurbita maxima (Rimu)cmacmoB042
CmoCh01G017650Wild cucumber (PI 183967)cmocpiB467
CmoCh01G017650Cucumber (Chinese Long) v2cmocuB463