CmoCh01G017230 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh01G017230
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Leucine-rich repeat receptor-like protein kinase family protein
Location	Cmo_Chr01 : 12902487 .. 12903047 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGCACCGCCGTTCGGTGCTTATCCATTTTACTCATTCTCGCCGTTTCCTCCGCCGTTCATGCCTGCCCACCGTCCGAACGGGCAGCTCTTCTGGCTTTCAGAGCTGCCCTTCAGGAGCCCTATTTAGGAATCTTCAATTCCTGGACCGGAGATGACTGTTGCAACCGGTGGTACGGCATTAGCTGTGACTCGGTCACCCACCGGGTTGCCGATATTAACCTCCGGGGCGAATCTGAGGACCCTATTTTCGAACGGGCTCACCGTACTGGTTTTATGACCGGCCATATTTCTCCTGCCATCTGCAAGCTCACTCGCCTCTCCGGCGTTGTTATTGCCGACTGGAAGGGTATTACCGGCGAGATTCCGAGATGTATAACCTCGTTGCCGTTCCTTAGGATTCTTGACCTCATTGGCAACCGTCTCTCTGGCGACCTTCCGGCCGATATTGGTCGGCTCCGACGACTCACGGTTCTGAACGTTGCGGACAATCTGATTTCCGGTTCAATTCCGGCGTCGCTTGCATCAATTCCGNAAACGAGAAATGGTTTTTCGATGTAG

mRNA sequence

ATGCGCACCGCCGTTCGGTGCTTATCCATTTTACTCATTCTCGCCGTTTCCTCCGCCGTTCATGCCTGCCCACCGTCCGAACGGGCAGCTCTTCTGGCTTTCAGAGCTGCCCTTCAGGAGCCCTATTTAGGAATCTTCAATTCCTGGACCGGAGATGACTGTTGCAACCGGTGGTACGGCATTAGCTGTGACTCGGTCACCCACCGGGTTGCCGATATTAACCTCCGGGGCGAATCTGAGGACCCTATTTTCGAACGGGCTCACCGTACTGGTTTTATGACCGGCCATATTTCTCCTGCCATCTGCAAGCTCACTCGCCTCTCCGGCGTTGTTATTGCCGACTGGAAGGGTATTACCGGCGAGATTCCGAGATGTATAACCTCGTTGCCGTTCCTTAGGATTCTTGACCTCATTGGCAACCGTCTCTCTGGCGACCTTCCGGCCGATATTGGTCGGCTCCGACGACTCACGGTTCTGAACGTTGCGGACAATCTGATTTCCGGTTCAATTCCGGCGTCGCTTGCATCAATTCCGNAAACGAGAAATGGTTTTTCGATGTAG

Coding sequence (CDS)

ATGCGCACCGCCGTTCGGTGCTTATCCATTTTACTCATTCTCGCCGTTTCCTCCGCCGTTCATGCCTGCCCACCGTCCGAACGGGCAGCTCTTCTGGCTTTCAGAGCTGCCCTTCAGGAGCCCTATTTAGGAATCTTCAATTCCTGGACCGGAGATGACTGTTGCAACCGGTGGTACGGCATTAGCTGTGACTCGGTCACCCACCGGGTTGCCGATATTAACCTCCGGGGCGAATCTGAGGACCCTATTTTCGAACGGGCTCACCGTACTGGTTTTATGACCGGCCATATTTCTCCTGCCATCTGCAAGCTCACTCGCCTCTCCGGCGTTGTTATTGCCGACTGGAAGGGTATTACCGGCGAGATTCCGAGATGTATAACCTCGTTGCCGTTCCTTAGGATTCTTGACCTCATTGGCAACCGTCTCTCTGGCGACCTTCCGGCCGATATTGGTCGGCTCCGACGACTCACGGTTCTGAACGTTGCGGACAATCTGATTTCCGGTTCAATTCCGGCGTCGCTTGCATCAATTCCGNAAACGAGAAATGGTTTTTCGATGTAG

Homology

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BLAST of CmoCh01G017230 vs. Swiss-Prot
Match: DR100_ARATH (DNA-damage-repair/toleration protein DRT100 OS=Arabidopsis thaliana GN=DRT100 PE=2 SV=2)

HSP 1 Score: 213.0 bits (541), Expect = 2.8e-54
Identity = 99/171 (57.89%), Postives = 134/171 (78.36%), Query Frame = 1


Query: 8   LSILLILAVSSAVHACPPSERAALLAFRAALQEPYLGIFNSWTGD-DCCNRWYGISCDSV 67
           L  ++ ++V S V  C P ++ AL AF+++L EP LGIFN+W+ + DCC  WYGISCD  
Sbjct: 12  LLAVVFISVISVVRCCSPKDQTALNAFKSSLSEPNLGIFNTWSENTDCCKEWYGISCDPD 71

Query: 68  THRVADINLRGESEDPIFERAHRTGFMTGHISPAICKLTRLSGVVIADWKGITGEIPRCI 127
           + RV DI+LRGESED IF++A R+G+M+G I PA+C LT L+ +V+ADWKGITGEIP CI
Sbjct: 72  SGRVTDISLRGESEDAIFQKAGRSGYMSGSIDPAVCDLTALTSLVLADWKGITGEIPPCI 131

Query: 128 TSLPFLRILDLIGNRLSGDLPADIGRLRRLTVLNVADNLISGSIPASLASI 178
           TSL  LRILDL GN+++G++PA+IG+L +L VLN+A+N +SG IPASL S+
Sbjct: 132 TSLASLRILDLAGNKITGEIPAEIGKLSKLAVLNLAENQMSGEIPASLTSL 182

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BLAST of CmoCh01G017230 vs. Swiss-Prot
Match: PGIP_VITVI (Polygalacturonase inhibitor OS=Vitis vinifera GN=pgip PE=1 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 2.1e-17
Identity = 55/174 (31.61%), Postives = 85/174 (48.85%), Query Frame = 1


Query: 9   SILLILAVS----SAVHACPPSERAALLAFRAALQEPYLGIFNSWTGDDCCNRWYGISCD 68
           S+LL+L  +    S    C P ++  LL  + AL  PY  I  SW  +  C  WY + CD
Sbjct: 12  SLLLVLLATRPCPSLSERCNPKDKKVLLQIKKALDNPY--ILASWNPNTDCCGWYCVECD 71

Query: 69  SVTHRVADINLRGESEDPIFERAHRTGFMTGHISPAICKLTRLSGVVIADWKGITGEIPR 128
             THR+  + +              +G ++G I  A+  L  L  ++      +TG+IP 
Sbjct: 72  LTTHRINSLTIF-------------SGQLSGQIPDAVGDLPFLETLIFRKLSNLTGQIPP 131

Query: 129 CITSLPFLRILDLIGNRLSGDLPADIGRLRRLTVLNVADNLISGSIPASLASIP 179
            I  L  L+++ L    LSG +PA    L+ LT L+++ N +SG IP SL+ +P
Sbjct: 132 AIAKLKHLKMVRLSWTNLSGPVPAFFSELKNLTYLDLSFNNLSGPIPGSLSLLP 170

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BLAST of CmoCh01G017230 vs. Swiss-Prot
Match: PGIP_PYRCO (Polygalacturonase inhibitor OS=Pyrus communis GN=PGIP PE=1 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 1.4e-16
Identity = 53/164 (32.32%), Postives = 84/164 (51.22%), Query Frame = 1


Query: 23  CPPSERAALLAFRAALQEPYLGIFNSWTGD-DCCNRWYGISCDSVTHRVADINL-RGE-- 82
           C P ++  LL  + A  +PY  +  SW  D DCC+ WY ++CDS T+R+  + +  G+  
Sbjct: 27  CNPDDKKVLLQIKKAFGDPY--VLASWKSDTDCCD-WYCVTCDSTTNRINSLTIFAGQVS 86

Query: 83  -------SEDPIFERA--HRTGFMTGHISPAICKLTRLSGVVIADWKGITGEIPRCITSL 142
                   + P  E    H+   +TG I PAI KL  L  + ++ W  ++G +P  ++ L
Sbjct: 87  GQIPALVGDLPYLETLEFHKQPNLTGPIQPAIAKLKGLKSLRLS-WTNLSGSVPDFLSQL 146

Query: 143 PFLRILDLIGNRLSGDLPADIGRLRRLTVLNVADNLISGSIPAS 174
             L  LDL  N L+G +P+ +  L  L  L +  N ++G IP S
Sbjct: 147 KNLTFLDLSFNNLTGAIPSSLSELPNLGALRLDRNKLTGHIPIS 186

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BLAST of CmoCh01G017230 vs. Swiss-Prot
Match: PGIP2_ARATH (Polygalacturonase inhibitor 2 OS=Arabidopsis thaliana GN=PGIP2 PE=2 SV=2)

HSP 1 Score: 85.1 bits (209), Expect = 8.8e-16
Identity = 53/179 (29.61%), Postives = 84/179 (46.93%), Query Frame = 1


Query: 12  LILAVSSAVHACPPSERAALLAFRAALQEPYLGIFNSWTGDDCCNRWYGISCDSVT--HR 71
           L+L  S A   C   ++  LL  + +L  PY     SW     C  WY + C   T  HR
Sbjct: 14  LLLTTSLAKDLCHKDDKTTLLKIKKSLNNPYH--LASWDPKTDCCSWYCLECGDATVNHR 73

Query: 72  VADI-----NLRGESEDPIFERAHRTGF-------MTGHISPAICKLTRLSGVVIADWKG 131
           V  +      + G+    + +  + T         +TGHI P I KL  L+ + ++ W  
Sbjct: 74  VTSLIIQDGEISGQIPPEVGDLPYLTSLIFRKLTNLTGHIQPTIAKLKNLTFLRLS-WTN 133

Query: 132 ITGEIPRCITSLPFLRILDLIGNRLSGDLPADIGRLRRLTVLNVADNLISGSIPASLAS 177
           +TG +P  ++ L  L  +DL  N LSG +P+ +  LR+L  L ++ N ++G IP S  +
Sbjct: 134 LTGPVPEFLSQLKNLEYIDLSFNDLSGSIPSSLSSLRKLEYLELSRNKLTGPIPESFGT 189

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BLAST of CmoCh01G017230 vs. Swiss-Prot
Match: PGIP1_ORYSJ (Polygalacturonase inhibitor 1 OS=Oryza sativa subsp. japonica GN=FOR1 PE=2 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 7.4e-15
Identity = 54/183 (29.51%), Postives = 93/183 (50.82%), Query Frame = 1


Query: 3   TAVRCLSILLILAVSSA---VHACPPSERAALLAFRAALQEPYLGIFNSWTGDDCCNRWY 62
           TA   L++LL +AV++A      CPPS++ AL+  + +L  P      S    DCC  W 
Sbjct: 4   TASFMLAVLLAVAVAAAPARAVRCPPSDKQALMRVKQSLGNPATLSTWSLASADCCE-WD 63

Query: 63  GISCDSVTHRVADINLRGESEDPIFERAHRTGFMTGHISPAICKLTRLSGVVIADWKGIT 122
            + CD    RV ++ + G ++            + G I  A+  LT L  + +    G++
Sbjct: 64  HVRCDEAG-RVNNVFIDGAND------------VRGQIPSAVAGLTALMSLSLFRLPGLS 123

Query: 123 GEIPRCITSLPFLRILDLIGNRLSGDLPADIGRLRRLTVLNVADNLISGSIPASLASIPX 182
           G IP C+T+L  L+ L +    +SG +P  + R+R L  ++++ N ++G IP S + +P 
Sbjct: 124 GPIPACLTALSNLQFLTISHTNVSGVIPDSLARIRSLDSVDLSHNSLTGPIPNSFSDLPN 172

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BLAST of CmoCh01G017230 vs. TrEMBL
Match: A0A0A0KX90_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G290740 PE=4 SV=1)

HSP 1 Score: 332.4 bits (851), Expect = 3.5e-88
Identity = 160/177 (90.40%), Postives = 169/177 (95.48%), Query Frame = 1


Query: 1   MRTAVRCLSILLILAVSSAVHACPPSERAALLAFRAALQEPYLGIFNSWTGDDCCNRWYG 60
           MRTA+RC S+LLILAVSS VHACPPSERAALLAFRAAL EPYLGIFNSWTGDDCCNRW+G
Sbjct: 1   MRTALRCFSLLLILAVSSVVHACPPSERAALLAFRAALHEPYLGIFNSWTGDDCCNRWHG 60

Query: 61  ISCDSVTHRVADINLRGESEDPIFERAHRTGFMTGHISPAICKLTRLSGVVIADWKGITG 120
           ISCD VTHRVADI+LRGE+EDPIFERAHRTG+MTG ISP ICKLTRLS V+IADWKGITG
Sbjct: 61  ISCDQVTHRVADISLRGEAEDPIFERAHRTGYMTGSISPEICKLTRLSSVIIADWKGITG 120

Query: 121 EIPRCITSLPFLRILDLIGNRLSGDLPADIGRLRRLTVLNVADNLISGSIPASLASI 178
           EIPRCITSLPFLRILDLIGNRLSGDLPADIGRLRRLTVLNVADNLISGSIPASL ++
Sbjct: 121 EIPRCITSLPFLRILDLIGNRLSGDLPADIGRLRRLTVLNVADNLISGSIPASLTAL 177

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BLAST of CmoCh01G017230 vs. TrEMBL
Match: W9R010_9ROSA (DNA-damage-repair/toleration protein OS=Morus notabilis GN=L484_007962 PE=4 SV=1)

HSP 1 Score: 291.2 bits (744), Expect = 9.0e-76
Identity = 137/167 (82.04%), Postives = 151/167 (90.42%), Query Frame = 1


Query: 11  LLILAVSSAVHACPPSERAALLAFRAALQEPYLGIFNSWTGDDCCNRWYGISCDSVTHRV 70
           +++ ++S AV ACPPSERAALLAF+AAL EPYLGIFNSWTG DCC  WYGISCD  THRV
Sbjct: 13  VIVASLSWAVDACPPSERAALLAFKAALHEPYLGIFNSWTGTDCCKNWYGISCDQETHRV 72

Query: 71  ADINLRGESEDPIFERAHRTGFMTGHISPAICKLTRLSGVVIADWKGITGEIPRCITSLP 130
           ADINLRGESEDPIFE+AHRTG+MTG+ISPAICKL RLS V IADWKGITGEIP+CITSLP
Sbjct: 73  ADINLRGESEDPIFEKAHRTGYMTGYISPAICKLPRLSSVTIADWKGITGEIPKCITSLP 132

Query: 131 FLRILDLIGNRLSGDLPADIGRLRRLTVLNVADNLISGSIPASLASI 178
           FLRILDLIGNR+SG+LPADIGRL RLTVLNVADNLISG IP SL ++
Sbjct: 133 FLRILDLIGNRISGELPADIGRLHRLTVLNVADNLISGRIPTSLTNL 179

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BLAST of CmoCh01G017230 vs. TrEMBL
Match: C6ZS03_SOYBN (Leucine rich repeat protein OS=Glycine max GN=GLYMA_13G341500 PE=2 SV=1)

HSP 1 Score: 287.7 bits (735), Expect = 9.9e-75
Identity = 136/177 (76.84%), Postives = 159/177 (89.83%), Query Frame = 1


Query: 4   AVRCLSILLI---LAVSSAVHACPPSERAALLAFRAALQEPYLGIFNSWTGDDCCNRWYG 63
           AVR +++LL+   +A+SS V +CPPS+RAALLAF+AAL EPYLGIFNSWTG DCC++WYG
Sbjct: 3   AVRSITVLLLVLFMAMSSGVRSCPPSDRAALLAFKAALHEPYLGIFNSWTGADCCHKWYG 62

Query: 64  ISCDSVTHRVADINLRGESEDPIFERAHRTGFMTGHISPAICKLTRLSGVVIADWKGITG 123
           +SCD  T RVADINLRGESE+PIFERAHRTG+MTG+ISPAICKL RLS + IADWKGI+G
Sbjct: 63  VSCDQETRRVADINLRGESEEPIFERAHRTGYMTGYISPAICKLARLSSITIADWKGISG 122

Query: 124 EIPRCITSLPFLRILDLIGNRLSGDLPADIGRLRRLTVLNVADNLISGSIPASLASI 178
           EIPRCIT+LPFLRI+DLIGNRLSG +PA IGRL RLTVLNVADNLISG+IP SLA++
Sbjct: 123 EIPRCITTLPFLRIVDLIGNRLSGSIPAGIGRLHRLTVLNVADNLISGTIPTSLANL 179

[Close]

BLAST of CmoCh01G017230 vs. TrEMBL
Match: A0A0L9UNL2_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan05g194800 PE=4 SV=1)

HSP 1 Score: 287.3 bits (734), Expect = 1.3e-74
Identity = 132/168 (78.57%), Postives = 153/168 (91.07%), Query Frame = 1


Query: 10  ILLILAVSSAVHACPPSERAALLAFRAALQEPYLGIFNSWTGDDCCNRWYGISCDSVTHR 69
           +LL +A+SS V +CPPS+RAALLAFRAAL EPYLGIFNSWTG DCC+ WYG+SCD  THR
Sbjct: 11  LLLFMALSSGVRSCPPSDRAALLAFRAALHEPYLGIFNSWTGADCCHNWYGVSCDQETHR 70

Query: 70  VADINLRGESEDPIFERAHRTGFMTGHISPAICKLTRLSGVVIADWKGITGEIPRCITSL 129
           VADI LRGESE+PIFERAHRTG+MTG+ISPAICKL RLS ++IADWKGI+GEIPRCIT+L
Sbjct: 71  VADITLRGESEEPIFERAHRTGYMTGYISPAICKLPRLSSIIIADWKGISGEIPRCITTL 130

Query: 130 PFLRILDLIGNRLSGDLPADIGRLRRLTVLNVADNLISGSIPASLASI 178
           PFLRI+D IGNR+SG +PADIGRL+RLTVLN ADN ISG+IPASLA++
Sbjct: 131 PFLRIVDFIGNRISGSIPADIGRLQRLTVLNFADNQISGTIPASLANL 178

[Close]

BLAST of CmoCh01G017230 vs. TrEMBL
Match: A0A0S3SG45_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.07G044500 PE=4 SV=1)

HSP 1 Score: 287.3 bits (734), Expect = 1.3e-74
Identity = 132/168 (78.57%), Postives = 153/168 (91.07%), Query Frame = 1


Query: 10  ILLILAVSSAVHACPPSERAALLAFRAALQEPYLGIFNSWTGDDCCNRWYGISCDSVTHR 69
           +LL +A+SS V +CPPS+RAALLAFRAAL EPYLGIFNSWTG DCC+ WYG+SCD  THR
Sbjct: 11  LLLFMALSSGVRSCPPSDRAALLAFRAALHEPYLGIFNSWTGADCCHNWYGVSCDQETHR 70

Query: 70  VADINLRGESEDPIFERAHRTGFMTGHISPAICKLTRLSGVVIADWKGITGEIPRCITSL 129
           VADI LRGESE+PIFERAHRTG+MTG+ISPAICKL RLS ++IADWKGI+GEIPRCIT+L
Sbjct: 71  VADITLRGESEEPIFERAHRTGYMTGYISPAICKLPRLSSIIIADWKGISGEIPRCITTL 130

Query: 130 PFLRILDLIGNRLSGDLPADIGRLRRLTVLNVADNLISGSIPASLASI 178
           PFLRI+D IGNR+SG +PADIGRL+RLTVLN ADN ISG+IPASLA++
Sbjct: 131 PFLRIVDFIGNRISGSIPADIGRLQRLTVLNFADNQISGTIPASLANL 178

[Close]

BLAST of CmoCh01G017230 vs. TAIR10
Match: AT3G20820.1 (AT3G20820.1 Leucine-rich repeat (LRR) family protein)

HSP 1 Score: 276.6 bits (706), Expect = 1.2e-74
Identity = 130/168 (77.38%), Postives = 148/168 (88.10%), Query Frame = 1


Query: 10  ILLILAVSSAVHACPPSERAALLAFRAALQEPYLGIFNSWTGDDCCNRWYGISCDSVTHR 69
           +LL+L +SSA   CPPS+R ALLAFR+AL EPYLGIFNSWTG DCC+ WYGISCDS+THR
Sbjct: 8   LLLLLLISSAT-CCPPSDRRALLAFRSALHEPYLGIFNSWTGQDCCHNWYGISCDSLTHR 67

Query: 70  VADINLRGESEDPIFERAHRTGFMTGHISPAICKLTRLSGVVIADWKGITGEIPRCITSL 129
           VADINLRGESEDPIFERAHRTG+MTGHIS +IC+LTRLS + IADWKGI+GEIP+CIT L
Sbjct: 68  VADINLRGESEDPIFERAHRTGYMTGHISASICELTRLSAITIADWKGISGEIPKCITRL 127

Query: 130 PFLRILDLIGNRLSGDLPADIGRLRRLTVLNVADNLISGSIPASLASI 178
           PFLR LDLIGN++SG +P DIGRL RL VLNVADN ISGSIP SL ++
Sbjct: 128 PFLRTLDLIGNQISGGIPYDIGRLNRLAVLNVADNRISGSIPKSLTNL 174

[Close]

BLAST of CmoCh01G017230 vs. TAIR10
Match: AT5G12940.1 (AT5G12940.1 Leucine-rich repeat (LRR) family protein)

HSP 1 Score: 234.2 bits (596), Expect = 6.6e-62
Identity = 106/169 (62.72%), Postives = 136/169 (80.47%), Query Frame = 1


Query: 9   SILLILAVSSAVHACPPSERAALLAFRAALQEPYLGIFNSWTGDDCCNRWYGISCDSVTH 68
           ++++ L +S+ VH+C PS+RAALL FRA L EPY+G+FN+W G DCC  WYG+SCD  T 
Sbjct: 13  NVVVFLLLSTTVHSCLPSDRAALLEFRAKLNEPYIGVFNTWKGLDCCKGWYGVSCDPNTR 72

Query: 69  RVADINLRGESEDPIFERAHRTGFMTGHISPAICKLTRLSGVVIADWKGITGEIPRCITS 128
           RVA I LRGESEDP+F++A R+G MTG ISP+ICKLTRLSG++IADWKGI+G IP CI +
Sbjct: 73  RVAGITLRGESEDPLFQKAKRSGLMTGSISPSICKLTRLSGIIIADWKGISGVIPSCIEN 132

Query: 129 LPFLRILDLIGNRLSGDLPADIGRLRRLTVLNVADNLISGSIPASLASI 178
           LPFLR LDL+GN+ SG +PA+IG+L RL VLN+ADN + G IP S+  +
Sbjct: 133 LPFLRHLDLVGNKFSGVIPANIGKLLRLKVLNLADNHLYGVIPPSITRL 181

[Close]

BLAST of CmoCh01G017230 vs. TAIR10
Match: AT3G12610.1 (AT3G12610.1 Leucine-rich repeat (LRR) family protein)

HSP 1 Score: 213.0 bits (541), Expect = 1.6e-55
Identity = 99/171 (57.89%), Postives = 134/171 (78.36%), Query Frame = 1


Query: 8   LSILLILAVSSAVHACPPSERAALLAFRAALQEPYLGIFNSWTGD-DCCNRWYGISCDSV 67
           L  ++ ++V S V  C P ++ AL AF+++L EP LGIFN+W+ + DCC  WYGISCD  
Sbjct: 12  LLAVVFISVISVVRCCSPKDQTALNAFKSSLSEPNLGIFNTWSENTDCCKEWYGISCDPD 71

Query: 68  THRVADINLRGESEDPIFERAHRTGFMTGHISPAICKLTRLSGVVIADWKGITGEIPRCI 127
           + RV DI+LRGESED IF++A R+G+M+G I PA+C LT L+ +V+ADWKGITGEIP CI
Sbjct: 72  SGRVTDISLRGESEDAIFQKAGRSGYMSGSIDPAVCDLTALTSLVLADWKGITGEIPPCI 131

Query: 128 TSLPFLRILDLIGNRLSGDLPADIGRLRRLTVLNVADNLISGSIPASLASI 178
           TSL  LRILDL GN+++G++PA+IG+L +L VLN+A+N +SG IPASL S+
Sbjct: 132 TSLASLRILDLAGNKITGEIPAEIGKLSKLAVLNLAENQMSGEIPASLTSL 182

[Close]

BLAST of CmoCh01G017230 vs. TAIR10
Match: AT2G26380.1 (AT2G26380.1 Leucine-rich repeat (LRR) family protein)

HSP 1 Score: 114.0 bits (284), Expect = 9.9e-26
Identity = 68/174 (39.08%), Postives = 99/174 (56.90%), Query Frame = 1


Query: 5   VRCLSILLILAVSSAVHACPPSERAALLAFRAALQEPYLGIFNSWT-GDDCCNRWYGISC 64
           +RCL+        +A   C P + A LLAF++ + +   GI ++W  G DCC+ W G+SC
Sbjct: 18  LRCLN-------PTAAATCHPDDEAGLLAFKSGITKDPSGILSTWKKGTDCCS-WNGVSC 77

Query: 65  DSVTHRVADINLRGESEDPIFERAHRTGFMTGHISPAICKLTRLSGVVIADWKGITGEIP 124
            +  +RV  + +R ES+D          F++G ISP++ KL  L GVV  + K ITG  P
Sbjct: 78  PN-GNRVVVLTIRIESDDAGI-------FLSGTISPSLAKLQHLEGVVFINLKNITGPFP 137

Query: 125 RCITSLPFLRILDLIGNRLSGDLPADIGRLRRLTVLNVADNLISGSIPASLASI 178
             +  LP L+ + L   RLSG LPA+IG L RL  L V  N   GSIP+S++++
Sbjct: 138 PFLFRLPHLKYVYLENTRLSGPLPANIGALNRLDTLTVKGNRFIGSIPSSISNL 175

[Close]

BLAST of CmoCh01G017230 vs. TAIR10
Match: AT1G33670.1 (AT1G33670.1 Leucine-rich repeat (LRR) family protein)

HSP 1 Score: 114.0 bits (284), Expect = 9.9e-26
Identity = 70/176 (39.77%), Postives = 101/176 (57.39%), Query Frame = 1


Query: 5   VRCLSILLILAVSSAVHACPPSERAALLAFRAALQEPYLGIFNSWTGD-DCCNRWYGISC 64
           +RCLS       S+    C P ++A LLAF++ + +   GI +SW  D DCC+ WYGI C
Sbjct: 15  LRCLS-------STGAATCHPDDKAGLLAFKSGITQDPSGILSSWQKDIDCCS-WYGIFC 74

Query: 65  DSVTH--RVADINLRGESEDPIFERAHRTGFMTGHISPAICKLTRLSGVVIADWKGITGE 124
               H  RV  + L G ++  + E      F++G ISP + KL  L+ + + + + ITG 
Sbjct: 75  LPTIHGDRVTMMALDGNTD--VGET-----FLSGTISPLLAKLHHLNEIRLTNLRKITGS 134

Query: 125 IPRCITSLPFLRILDLIGNRLSGDLPADIGRLRRLTVLNVADNLISGSIPASLASI 178
            P  +  LP LR + L  NRLSG LPA+IG L  L +L+VA N  SGSIP+S++ +
Sbjct: 135 FPHFLFKLPKLRTVYLENNRLSGPLPANIGALSNLEILSVAGNRFSGSIPSSMSKL 175

[Close]

BLAST of CmoCh01G017230 vs. NCBI nr
Match: gi|659097649|ref|XP_008449738.1| (PREDICTED: DNA-damage-repair/toleration protein DRT100-like [Cucumis melo])

HSP 1 Score: 335.5 bits (859), Expect = 5.9e-89
Identity = 162/175 (92.57%), Postives = 170/175 (97.14%), Query Frame = 1


Query: 3   TAVRCLSILLILAVSSAVHACPPSERAALLAFRAALQEPYLGIFNSWTGDDCCNRWYGIS 62
           TAVRCLSILLILAVSSAVHACPPSERAALLAFRAAL EPYLGIFNSWTGDDCCNRW+GIS
Sbjct: 50  TAVRCLSILLILAVSSAVHACPPSERAALLAFRAALHEPYLGIFNSWTGDDCCNRWHGIS 109

Query: 63  CDSVTHRVADINLRGESEDPIFERAHRTGFMTGHISPAICKLTRLSGVVIADWKGITGEI 122
           CD VTHRVADINLRGE+EDPIFERAHRTG+MTG+ISP ICKLTRLS V+IADWKGITGEI
Sbjct: 110 CDQVTHRVADINLRGEAEDPIFERAHRTGYMTGYISPEICKLTRLSSVIIADWKGITGEI 169

Query: 123 PRCITSLPFLRILDLIGNRLSGDLPADIGRLRRLTVLNVADNLISGSIPASLASI 178
           PRCITSLPFLRILDLIGNRLSGDLPADIGRLRRLTVLNVADNLISGSIP+SL ++
Sbjct: 170 PRCITSLPFLRILDLIGNRLSGDLPADIGRLRRLTVLNVADNLISGSIPSSLTAL 224

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BLAST of CmoCh01G017230 vs. NCBI nr
Match: gi|449448756|ref|XP_004142131.1| (PREDICTED: DNA-damage-repair/toleration protein DRT100 [Cucumis sativus])

HSP 1 Score: 332.4 bits (851), Expect = 5.0e-88
Identity = 160/177 (90.40%), Postives = 169/177 (95.48%), Query Frame = 1


Query: 1   MRTAVRCLSILLILAVSSAVHACPPSERAALLAFRAALQEPYLGIFNSWTGDDCCNRWYG 60
           MRTA+RC S+LLILAVSS VHACPPSERAALLAFRAAL EPYLGIFNSWTGDDCCNRW+G
Sbjct: 1   MRTALRCFSLLLILAVSSVVHACPPSERAALLAFRAALHEPYLGIFNSWTGDDCCNRWHG 60

Query: 61  ISCDSVTHRVADINLRGESEDPIFERAHRTGFMTGHISPAICKLTRLSGVVIADWKGITG 120
           ISCD VTHRVADI+LRGE+EDPIFERAHRTG+MTG ISP ICKLTRLS V+IADWKGITG
Sbjct: 61  ISCDQVTHRVADISLRGEAEDPIFERAHRTGYMTGSISPEICKLTRLSSVIIADWKGITG 120

Query: 121 EIPRCITSLPFLRILDLIGNRLSGDLPADIGRLRRLTVLNVADNLISGSIPASLASI 178
           EIPRCITSLPFLRILDLIGNRLSGDLPADIGRLRRLTVLNVADNLISGSIPASL ++
Sbjct: 121 EIPRCITSLPFLRILDLIGNRLSGDLPADIGRLRRLTVLNVADNLISGSIPASLTAL 177

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BLAST of CmoCh01G017230 vs. NCBI nr
Match: gi|703082536|ref|XP_010091979.1| (DNA-damage-repair/toleration protein [Morus notabilis])

HSP 1 Score: 291.2 bits (744), Expect = 1.3e-75
Identity = 137/167 (82.04%), Postives = 151/167 (90.42%), Query Frame = 1


Query: 11  LLILAVSSAVHACPPSERAALLAFRAALQEPYLGIFNSWTGDDCCNRWYGISCDSVTHRV 70
           +++ ++S AV ACPPSERAALLAF+AAL EPYLGIFNSWTG DCC  WYGISCD  THRV
Sbjct: 13  VIVASLSWAVDACPPSERAALLAFKAALHEPYLGIFNSWTGTDCCKNWYGISCDQETHRV 72

Query: 71  ADINLRGESEDPIFERAHRTGFMTGHISPAICKLTRLSGVVIADWKGITGEIPRCITSLP 130
           ADINLRGESEDPIFE+AHRTG+MTG+ISPAICKL RLS V IADWKGITGEIP+CITSLP
Sbjct: 73  ADINLRGESEDPIFEKAHRTGYMTGYISPAICKLPRLSSVTIADWKGITGEIPKCITSLP 132

Query: 131 FLRILDLIGNRLSGDLPADIGRLRRLTVLNVADNLISGSIPASLASI 178
           FLRILDLIGNR+SG+LPADIGRL RLTVLNVADNLISG IP SL ++
Sbjct: 133 FLRILDLIGNRISGELPADIGRLHRLTVLNVADNLISGRIPTSLTNL 179

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BLAST of CmoCh01G017230 vs. NCBI nr
Match: gi|359806061|ref|NP_001240925.1| (DNA-damage-repair/toleration protein DRT100-like precursor [Glycine max])

HSP 1 Score: 287.7 bits (735), Expect = 1.4e-74
Identity = 136/177 (76.84%), Postives = 159/177 (89.83%), Query Frame = 1


Query: 4   AVRCLSILLI---LAVSSAVHACPPSERAALLAFRAALQEPYLGIFNSWTGDDCCNRWYG 63
           AVR +++LL+   +A+SS V +CPPS+RAALLAF+AAL EPYLGIFNSWTG DCC++WYG
Sbjct: 3   AVRSITVLLLVLFMAMSSGVRSCPPSDRAALLAFKAALHEPYLGIFNSWTGADCCHKWYG 62

Query: 64  ISCDSVTHRVADINLRGESEDPIFERAHRTGFMTGHISPAICKLTRLSGVVIADWKGITG 123
           +SCD  T RVADINLRGESE+PIFERAHRTG+MTG+ISPAICKL RLS + IADWKGI+G
Sbjct: 63  VSCDQETRRVADINLRGESEEPIFERAHRTGYMTGYISPAICKLARLSSITIADWKGISG 122

Query: 124 EIPRCITSLPFLRILDLIGNRLSGDLPADIGRLRRLTVLNVADNLISGSIPASLASI 178
           EIPRCIT+LPFLRI+DLIGNRLSG +PA IGRL RLTVLNVADNLISG+IP SLA++
Sbjct: 123 EIPRCITTLPFLRIVDLIGNRLSGSIPAGIGRLHRLTVLNVADNLISGTIPTSLANL 179

[Close]

BLAST of CmoCh01G017230 vs. NCBI nr
Match: gi|950960853|ref|XP_014497752.1| (PREDICTED: DNA-damage-repair/toleration protein DRT100-like [Vigna radiata var. radiata])

HSP 1 Score: 287.3 bits (734), Expect = 1.9e-74
Identity = 132/168 (78.57%), Postives = 153/168 (91.07%), Query Frame = 1


Query: 10  ILLILAVSSAVHACPPSERAALLAFRAALQEPYLGIFNSWTGDDCCNRWYGISCDSVTHR 69
           +LL +A+SS V +CPPS+RAALLAFRAAL EPYLGIFNSWTG DCC+ WYG+SCD  THR
Sbjct: 11  LLLFMALSSGVRSCPPSDRAALLAFRAALHEPYLGIFNSWTGADCCHNWYGVSCDQETHR 70

Query: 70  VADINLRGESEDPIFERAHRTGFMTGHISPAICKLTRLSGVVIADWKGITGEIPRCITSL 129
           VADI LRGESE+PIFERAHRTG+MTG+ISPAICKL RLS ++IADWKGI+GEIPRCIT+L
Sbjct: 71  VADITLRGESEEPIFERAHRTGYMTGYISPAICKLPRLSSIIIADWKGISGEIPRCITTL 130

Query: 130 PFLRILDLIGNRLSGDLPADIGRLRRLTVLNVADNLISGSIPASLASI 178
           PFLRI+D IGNR+SG +PADIGRL+RLTVLN ADN ISG+IPASLA++
Sbjct: 131 PFLRIVDFIGNRISGSIPADIGRLQRLTVLNFADNQISGTIPASLANL 178

The following BLAST results are available for this feature:

BLAST of CmoCh01G017230 vs. Swiss-Prot


Match Name	E-value	Identity	Description
DR100_ARATH	2.8e-54	57.89	DNA-damage-repair/toleration protein DRT100 OS=Arabidopsis thaliana GN=DRT100 PE...	[more]
PGIP_VITVI	2.1e-17	31.61	Polygalacturonase inhibitor OS=Vitis vinifera GN=pgip PE=1 SV=1	[more]
PGIP_PYRCO	1.4e-16	32.32	Polygalacturonase inhibitor OS=Pyrus communis GN=PGIP PE=1 SV=1	[more]
PGIP2_ARATH	8.8e-16	29.61	Polygalacturonase inhibitor 2 OS=Arabidopsis thaliana GN=PGIP2 PE=2 SV=2	[more]
PGIP1_ORYSJ	7.4e-15	29.51	Polygalacturonase inhibitor 1 OS=Oryza sativa subsp. japonica GN=FOR1 PE=2 SV=1	[more]

BLAST of CmoCh01G017230 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KX90_CUCSA	3.5e-88	90.40	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G290740 PE=4 SV=1	[more]
W9R010_9ROSA	9.0e-76	82.04	DNA-damage-repair/toleration protein OS=Morus notabilis GN=L484_007962 PE=4 SV=1	[more]
C6ZS03_SOYBN	9.9e-75	76.84	Leucine rich repeat protein OS=Glycine max GN=GLYMA_13G341500 PE=2 SV=1	[more]
A0A0L9UNL2_PHAAN	1.3e-74	78.57	Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan05g194800 PE=4 SV=1	[more]
A0A0S3SG45_PHAAN	1.3e-74	78.57	Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.07G044500 PE=...	[more]

BLAST of CmoCh01G017230 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G20820.1	1.2e-74	77.38	Leucine-rich repeat (LRR) family protein	[more]
AT5G12940.1	6.6e-62	62.72	Leucine-rich repeat (LRR) family protein	[more]
AT3G12610.1	1.6e-55	57.89	Leucine-rich repeat (LRR) family protein	[more]
AT2G26380.1	9.9e-26	39.08	Leucine-rich repeat (LRR) family protein	[more]
AT1G33670.1	9.9e-26	39.77	Leucine-rich repeat (LRR) family protein	[more]

BLAST of CmoCh01G017230 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659097649\|ref\|XP_008449738.1\|	5.9e-89	92.57	PREDICTED: DNA-damage-repair/toleration protein DRT100-like [Cucumis melo]	[more]
gi\|449448756\|ref\|XP_004142131.1\|	5.0e-88	90.40	PREDICTED: DNA-damage-repair/toleration protein DRT100 [Cucumis sativus]	[more]
gi\|703082536\|ref\|XP_010091979.1\|	1.3e-75	82.04	DNA-damage-repair/toleration protein [Morus notabilis]	[more]
gi\|359806061\|ref\|NP_001240925.1\|	1.4e-74	76.84	DNA-damage-repair/toleration protein DRT100-like precursor [Glycine max]	[more]
gi\|950960853\|ref\|XP_014497752.1\|	1.9e-74	78.57	PREDICTED: DNA-damage-repair/toleration protein DRT100-like [Vigna radiata var. ...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR013210	LRR_N_plant-typ

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0048046	apoplast
cellular_component	GO:0005618	cell wall
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0016020	membrane
cellular_component	GO:0009506	plasmodesma
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh01G017230.1	CmoCh01G017230.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013210	Leucine-rich repeat-containing N-terminal, plant-type	PFAM	PF08263	LRRNT_2	coord: 25..64 score: 1.
None	No IPR available	PANTHER	PTHR27000	FAMILY NOT NAMED	coord: 8..177 score: 6.3
None	No IPR available	PANTHER	PTHR27000:SF151	DNA-DAMAGE-REPAIR/TOLERATION PROTEIN DRT100-RELATED	coord: 8..177 score: 6.3

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh01G017230	Cucurbita moschata (Rifu)	cmocmoB020
CmoCh01G017230	Cucumber (Gy14) v1	cgycmoB0748
CmoCh01G017230	Cucurbita maxima (Rimu)	cmacmoB050
CmoCh01G017230	Cucurbita maxima (Rimu)	cmacmoB468
CmoCh01G017230	Wild cucumber (PI 183967)	cmocpiB467
CmoCh01G017230	Cucumber (Chinese Long) v2	cmocuB463
CmoCh01G017230	Melon (DHL92) v3.5.1	cmomeB424
CmoCh01G017230	Watermelon (Charleston Gray)	cmowcgB413
CmoCh01G017230	Watermelon (Charleston Gray)	cmowcgB421
CmoCh01G017230	Watermelon (Charleston Gray)	cmowcgB433
CmoCh01G017230	Watermelon (97103) v1	cmowmB435
CmoCh01G017230	Watermelon (97103) v1	cmowmB460
CmoCh01G017230	Cucurbita pepo (Zucchini)	cmocpeB467
CmoCh01G017230	Cucurbita pepo (Zucchini)	cmocpeB448
CmoCh01G017230	Bottle gourd (USVL1VR-Ls)	cmolsiB416
CmoCh01G017230	Bottle gourd (USVL1VR-Ls)	cmolsiB425
CmoCh01G017230	Cucumber (Gy14) v2	cgybcmoB486
CmoCh01G017230	Melon (DHL92) v3.6.1	cmomedB488
CmoCh01G017230	Silver-seed gourd	carcmoB0874
CmoCh01G017230	Silver-seed gourd	carcmoB1045
CmoCh01G017230	Cucumber (Chinese Long) v3	cmocucB0553
CmoCh01G017230	Watermelon (97103) v2	cmowmbB462
CmoCh01G017230	Watermelon (97103) v2	cmowmbB471
CmoCh01G017230	Wax gourd	cmowgoB0601
CmoCh01G017230	Wax gourd	cmowgoB0634