CmoCh01G017130 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh01G017130
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionEukaryotic translation initiation factor 5A-2
LocationCmo_Chr01 : 12861126 .. 12863116 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ACGTGTCCGGATAAAACAGATGGTATAAATTGCTCTCGTCCTCTTGACTCGTATTCTCCTCCTTCCTCCCGCTTTCCTTCCGTTTCCACCGAAATCCCACTGTACAACACACAAGAAAAAGCTCGGAAGCTGTAGAAGTGCGAAATCTTCAGCCATGTCGGACGAGGAGCACCACTTTGAATCCAAGGCCGACGCCGGAGCCTCCAAAACCTACCCTCAACAGGCTGGAACCATCCGGAAGAACGGCTACATCGTCATCAAGAACCGTCCATGCAAGGTGATTTGTTGTGTTTGTTGCGATGATTTGGTTTTCTCGTTGTTTCGATCGTCCGGTGTAATCTTTTGTGGTGTTTAGGGTTGGGTTTGGGTCGGGCGCGTTAGATCTTTGGTTGATTTGAAAATTTTATTTCGCTTGATAATTGATTGTTATAGATTATGTGCGATTTATCGTATATTACATAGCTTAGACGGTGAGAATTGTCCCAAGTGTTGGATTTGGGAAAATGGATAAATCTGAAATTACCATTATTGATCATATGGATCAATATTTGTTGAGAGATCCGAGGGTTGTAATTATGATTTCACAGAGTTTCTTGATGGTTTAGTATTGTTCGTTCAACGAATAACAGTGATTTTTCTCCTCATAACTCTGAGAGCACGCTGGTGTTTACACTGCAGTTATTGATTCCCGGAGATTAATTTCCTCAGTGTCATATTTCCCATAATTGATGTTTCCTTGTTCTTAAGCGCGAGGGTGCGTTTGTGTTTATTGAGACTGTTATTGCTACCTGATAATAATTAGTGAAAAAGTCTATCCGAAGCTCCTAGAAGGCTAATTGAATAGTGCTTCCAAATTATACTTTTAGGCATTAAAGTAGAATTGCCTCTAGCCTTCCTTATTTGTAAGGCCACTTTCTATGCTACGTCTCTGTGTTTAAATCTCAGTATGTTGGTTTTTTTCCCTCTGGTTCGTTTGGTAATGCAGGTGGTTGAGGTTTCAACTTCTAAGACTGGCAAGCACGGGCATGCTAAGTGTCACTTCGTCGGAATTGACATCTTCACTGCCAAGAAGCTCGAAGATATCGTTCCATCATCCCACAATTGTGATGTAAGGAGTGTATTATATAGCTTGCGTTCATTTACCCGGTTTATATCCGTTCCACTAATGGTTCTTATTTCATGCTTTGTAGGTGCCTCATGTTAATCGTACTGATTATCAGCTGATTGATATCTCTGAGGATGGATTTGTGAGTAATTTGTTTACATGAGATTGTTTGATTTAAATTTGTCTTCCCGACTTCAAGAAACTTAGTTATTTCTGATGTTAAATATATTTGTCTATATGTATATAGTTCAATGTGTTTTTATAATTAATTATAGAGGTGAATCTCCCTGGCTTGGTGTCTCTACTTCAATTCATAGATAAGCAAGCGTAGATAGAGGCAATGAATCATTCATACATGCTGCAGCTTGTCGTGTAAAGCCTTTTATCTTGATTCATGTTGTTTTCTTTGCTGCAGGTGAGTCTTTTGACTGACAATGGTAACACCAAGGATGATTTGAGGCTCCCAACTGATGATAACCTGCTCTCTCAGGTAAAGTCACATATGAAACCTTATTATGGCTAGACGGATTCTCCGTCCAAAATTGCAGTTATTCGAGTAGATCTCATACCCTAATTTAGTTATTCAAGTAGCTCATTTCCATTTTCTGTTAGAAGGTACCTGATTCCTTCTGTTCCCCCTGTTCCCCGTATAATATATTCTCTGTCCTTGGGATATTTTTAAGATATGGTCATGTGGGTTTATTCTTAATATTATTCCATTTTTGTGTTGATGTCTATTTAATATGTACGTACGAACTGAATCCGTTGTTTGTATCCACAGATTAAGGATGGATTTGCTGAAGGAAAGGACCTTGTCGTGTCGGTGATGTCTGCCATGGGAGAGGAACAAATTTGTGCCCTGAAGGATATTGGGCCGAAGAACTAG

mRNA sequence

ACGTGTCCGGATAAAACAGATGGTATAAATTGCTCTCGTCCTCTTGACTCGTATTCTCCTCCTTCCTCCCGCTTTCCTTCCGTTTCCACCGAAATCCCACTGTACAACACACAAGAAAAAGCTCGGAAGCTGTAGAAGTGCGAAATCTTCAGCCATGTCGGACGAGGAGCACCACTTTGAATCCAAGGCCGACGCCGGAGCCTCCAAAACCTACCCTCAACAGGCTGGAACCATCCGGAAGAACGGCTACATCGTCATCAAGAACCGTCCATGCAAGGTGGTTGAGGTTTCAACTTCTAAGACTGGCAAGCACGGGCATGCTAAGTGTCACTTCGTCGGAATTGACATCTTCACTGCCAAGAAGCTCGAAGATATCGTTCCATCATCCCACAATTGTGATGTGCCTCATGTTAATCGTACTGATTATCAGCTGATTGATATCTCTGAGGATGGATTTGTGAGTCTTTTGACTGACAATGGTAACACCAAGGATGATTTGAGGCTCCCAACTGATGATAACCTGCTCTCTCAGATTAAGGATGGATTTGCTGAAGGAAAGGACCTTGTCGTGTCGGTGATGTCTGCCATGGGAGAGGAACAAATTTGTGCCCTGAAGGATATTGGGCCGAAGAACTAG

Coding sequence (CDS)

ATGTCGGACGAGGAGCACCACTTTGAATCCAAGGCCGACGCCGGAGCCTCCAAAACCTACCCTCAACAGGCTGGAACCATCCGGAAGAACGGCTACATCGTCATCAAGAACCGTCCATGCAAGGTGGTTGAGGTTTCAACTTCTAAGACTGGCAAGCACGGGCATGCTAAGTGTCACTTCGTCGGAATTGACATCTTCACTGCCAAGAAGCTCGAAGATATCGTTCCATCATCCCACAATTGTGATGTGCCTCATGTTAATCGTACTGATTATCAGCTGATTGATATCTCTGAGGATGGATTTGTGAGTCTTTTGACTGACAATGGTAACACCAAGGATGATTTGAGGCTCCCAACTGATGATAACCTGCTCTCTCAGATTAAGGATGGATTTGCTGAAGGAAAGGACCTTGTCGTGTCGGTGATGTCTGCCATGGGAGAGGAACAAATTTGTGCCCTGAAGGATATTGGGCCGAAGAACTAG
Homology
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BLAST of CmoCh01G017130 vs. Swiss-Prot
Match: IF5A_MANES (Eukaryotic translation initiation factor 5A OS=Manihot esculenta PE=2 SV=2)

HSP 1 Score: 314.7 bits (805), Expect = 5.8e-85
Identity = 151/160 (94.38%), Postives = 157/160 (98.12%), Query Frame = 1 

Query: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFESKADAGASKT+PQQAGTIRKNGYIVIKNRPCKV+EVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKNRPCKVMEVSTSKTGKHGHAKCHF 60

Query: 61  VGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLRLPTD 120
           VGIDIF  KKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLT+ GNTKDDLRLPTD
Sbjct: 61  VGIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTETGNTKDDLRLPTD 120

Query: 121 DNLLSQIKDGFAEGKDLVVSVMSAMGEEQICALKDIGPKN 161
           +NLLSQIKDGFAEGKDLVVSVMSAMGEE+IC+LKDIGPKN
Sbjct: 121 ENLLSQIKDGFAEGKDLVVSVMSAMGEERICSLKDIGPKN 160

[Close]
BLAST of CmoCh01G017130 vs. Swiss-Prot
Match: IF5A2_NICPL (Eukaryotic translation initiation factor 5A-2 OS=Nicotiana plumbaginifolia GN=EIF-5A2 PE=2 SV=1)

HSP 1 Score: 312.8 bits (800), Expect = 2.2e-84
Identity = 152/159 (95.60%), Postives = 155/159 (97.48%), Query Frame = 1 

Query: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEH FESKADAGASKTYPQQAGTIRKNG+IVIK RPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHQFESKADAGASKTYPQQAGTIRKNGHIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLRLPTD 120
           V IDIFT KKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLT+NGNTKDDLRLPTD
Sbjct: 61  VAIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120

Query: 121 DNLLSQIKDGFAEGKDLVVSVMSAMGEEQICALKDIGPK 160
           DNLL+QIKDGFAEGKDLVVSVMSAMGEEQICALKDIGPK
Sbjct: 121 DNLLTQIKDGFAEGKDLVVSVMSAMGEEQICALKDIGPK 159

[Close]
BLAST of CmoCh01G017130 vs. Swiss-Prot
Match: IF5A1_NICPL (Eukaryotic translation initiation factor 5A-1 OS=Nicotiana plumbaginifolia GN=EIF-5A1 PE=2 SV=1)

HSP 1 Score: 311.6 bits (797), Expect = 4.9e-84
Identity = 149/159 (93.71%), Postives = 155/159 (97.48%), Query Frame = 1 

Query: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFESKADAGASKTYPQQAGTIRKNG+IVIKNRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGHIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLRLPTD 120
           V IDIFT KKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLT+NGNTKDDLRLPTD
Sbjct: 61  VAIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120

Query: 121 DNLLSQIKDGFAEGKDLVVSVMSAMGEEQICALKDIGPK 160
           DNLL+ IKDGFAEGKDLV+SVMSAMGEEQIC +KD+GPK
Sbjct: 121 DNLLALIKDGFAEGKDLVLSVMSAMGEEQICGIKDVGPK 159

[Close]
BLAST of CmoCh01G017130 vs. Swiss-Prot
Match: IF5A1_TOBAC (Eukaryotic translation initiation factor 5A-1 OS=Nicotiana tabacum GN=EIF-5A1 PE=3 SV=1)

HSP 1 Score: 311.6 bits (797), Expect = 4.9e-84
Identity = 149/159 (93.71%), Postives = 155/159 (97.48%), Query Frame = 1 

Query: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFESKADAGASKTYPQQAGTIRKNG+IVIKNRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGHIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLRLPTD 120
           V IDIFT KKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLT+NGNTKDDLRLPTD
Sbjct: 61  VAIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120

Query: 121 DNLLSQIKDGFAEGKDLVVSVMSAMGEEQICALKDIGPK 160
           DNLL+ IKDGFAEGKDLV+SVMSAMGEEQIC +KD+GPK
Sbjct: 121 DNLLALIKDGFAEGKDLVLSVMSAMGEEQICGIKDVGPK 159

[Close]
BLAST of CmoCh01G017130 vs. Swiss-Prot
Match: IF5A5_SOLTU (Eukaryotic translation initiation factor 5A-5 OS=Solanum tuberosum GN=EIF5A5 PE=2 SV=1)

HSP 1 Score: 310.1 bits (793), Expect = 1.4e-83
Identity = 148/159 (93.08%), Postives = 155/159 (97.48%), Query Frame = 1 

Query: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFESKADAGASKTYPQQAGTIRK+G+IVIKNRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKSGHIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLRLPTD 120
           V IDIFT KKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLT+NGNTKDDLRLPTD
Sbjct: 61  VAIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120

Query: 121 DNLLSQIKDGFAEGKDLVVSVMSAMGEEQICALKDIGPK 160
           D LL+Q+KDGFAEGKDLV+SVMSAMGEEQIC +KDIGPK
Sbjct: 121 DTLLAQVKDGFAEGKDLVLSVMSAMGEEQICGIKDIGPK 159

[Close]
BLAST of CmoCh01G017130 vs. TrEMBL
Match: A0A061EHP3_THECC (Eukaryotic elongation factor 5A-1 isoform 3 (Fragment) OS=Theobroma cacao GN=TCM_011621 PE=4 SV=1)

HSP 1 Score: 322.8 bits (826), Expect = 2.4e-85
Identity = 156/159 (98.11%), Postives = 159/159 (100.00%), Query Frame = 1 

Query: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 40  MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 99

Query: 61  VGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLRLPTD 120
           VGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLT+NGNTKDDLRLPTD
Sbjct: 100 VGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 159

Query: 121 DNLLSQIKDGFAEGKDLVVSVMSAMGEEQICALKDIGPK 160
           DNLL+QIKDGFAEGKDLVV+VMSAMGEEQICALKDIGPK
Sbjct: 160 DNLLTQIKDGFAEGKDLVVTVMSAMGEEQICALKDIGPK 198

[Close]
BLAST of CmoCh01G017130 vs. TrEMBL
Match: Q71F50_HEVBR (Eukaryotic translation initiation factor 5A OS=Hevea brasiliensis GN=eIF-5A PE=2 SV=1)

HSP 1 Score: 322.8 bits (826), Expect = 2.4e-85
Identity = 156/160 (97.50%), Postives = 159/160 (99.38%), Query Frame = 1 

Query: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLRLPTD 120
           VGIDIF AKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLT+NGNTKDDLRLPTD
Sbjct: 61  VGIDIFNAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120

Query: 121 DNLLSQIKDGFAEGKDLVVSVMSAMGEEQICALKDIGPKN 161
           +NLLSQIKDGFAEGKDLVV+VMSAMGEEQICALKDIGPKN
Sbjct: 121 ENLLSQIKDGFAEGKDLVVTVMSAMGEEQICALKDIGPKN 160

[Close]
BLAST of CmoCh01G017130 vs. TrEMBL
Match: A0A061EBN4_THECC (Eukaryotic translation initiation factor 5A OS=Theobroma cacao GN=TCM_011621 PE=3 SV=1)

HSP 1 Score: 322.8 bits (826), Expect = 2.4e-85
Identity = 156/159 (98.11%), Postives = 159/159 (100.00%), Query Frame = 1 

Query: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLRLPTD 120
           VGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLT+NGNTKDDLRLPTD
Sbjct: 61  VGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120

Query: 121 DNLLSQIKDGFAEGKDLVVSVMSAMGEEQICALKDIGPK 160
           DNLL+QIKDGFAEGKDLVV+VMSAMGEEQICALKDIGPK
Sbjct: 121 DNLLTQIKDGFAEGKDLVVTVMSAMGEEQICALKDIGPK 159

[Close]
BLAST of CmoCh01G017130 vs. TrEMBL
Match: A1Z3W7_ROSCH (Eukaryotic translation initiation factor 5A OS=Rosa chinensis PE=2 SV=1)

HSP 1 Score: 322.4 bits (825), Expect = 3.1e-85
Identity = 156/159 (98.11%), Postives = 158/159 (99.37%), Query Frame = 1 

Query: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFESK DAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFESKTDAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLRLPTD 120
           VGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLT+NGNTKDDLRLPTD
Sbjct: 61  VGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120

Query: 121 DNLLSQIKDGFAEGKDLVVSVMSAMGEEQICALKDIGPK 160
           DNLL+QIKDGFAEGKDLVVSVMSAMGEEQICALKDIGPK
Sbjct: 121 DNLLTQIKDGFAEGKDLVVSVMSAMGEEQICALKDIGPK 159

[Close]
BLAST of CmoCh01G017130 vs. TrEMBL
Match: J7LMM2_ARAHY (Eukaryotic translation initiation factor 5A OS=Arachis hypogaea GN=IF5A PE=2 SV=1)

HSP 1 Score: 322.0 bits (824), Expect = 4.1e-85
Identity = 156/160 (97.50%), Postives = 159/160 (99.38%), Query Frame = 1 

Query: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIK RPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLRLPTD 120
           VGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLT+NGNTKDDLRLPTD
Sbjct: 61  VGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120

Query: 121 DNLLSQIKDGFAEGKDLVVSVMSAMGEEQICALKDIGPKN 161
           D+LL+QIKDGFAEGKDLVVSVMSAMGEEQICALKDIGPKN
Sbjct: 121 DSLLTQIKDGFAEGKDLVVSVMSAMGEEQICALKDIGPKN 160

[Close]
BLAST of CmoCh01G017130 vs. TAIR10
Match: AT1G13950.1 (AT1G13950.1 eukaryotic elongation factor 5A-1)

HSP 1 Score: 295.0 bits (754), Expect = 2.7e-80
Identity = 145/159 (91.19%), Postives = 151/159 (94.97%), Query Frame = 1 

Query: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFES +DAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFES-SDAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLRLPTD 120
           V IDIFT+KKLEDIVPSSHNCDVPHVNRTDYQLIDISEDG+VSLLTDNG+TKDDL+LP D
Sbjct: 61  VAIDIFTSKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGYVSLLTDNGSTKDDLKLPND 120

Query: 121 DNLLSQIKDGFAEGKDLVVSVMSAMGEEQICALKDIGPK 160
           D LL QIK GF +GKDLVVSVMSAMGEEQI ALKDIGPK
Sbjct: 121 DTLLQQIKSGFDDGKDLVVSVMSAMGEEQINALKDIGPK 158

[Close]
BLAST of CmoCh01G017130 vs. TAIR10
Match: AT1G69410.1 (AT1G69410.1 eukaryotic elongation factor 5A-3)

HSP 1 Score: 286.6 bits (732), Expect = 9.6e-78
Identity = 137/159 (86.16%), Postives = 151/159 (94.97%), Query Frame = 1 

Query: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60
           MSD+EHHFES +DAGASKTYPQQAG IRK G+IVIK RPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDDEHHFES-SDAGASKTYPQQAGNIRKGGHIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLRLPTD 120
           V IDIFT+KKLEDIVPSSHNCDVPHVNR DYQLIDISEDGFVSLLTDNG+TKDDL+LPTD
Sbjct: 61  VAIDIFTSKKLEDIVPSSHNCDVPHVNRVDYQLIDISEDGFVSLLTDNGSTKDDLKLPTD 120

Query: 121 DNLLSQIKDGFAEGKDLVVSVMSAMGEEQICALKDIGPK 160
           + LL+Q+K+GF EGKD+VVSVMSAMGEEQ+CALK++GPK
Sbjct: 121 EALLTQLKNGFEEGKDIVVSVMSAMGEEQMCALKEVGPK 158

[Close]
BLAST of CmoCh01G017130 vs. TAIR10
Match: AT1G26630.1 (AT1G26630.1 Eukaryotic translation initiation factor 5A-1 (eIF-5A 1) protein)

HSP 1 Score: 271.6 bits (693), Expect = 3.2e-73
Identity = 129/157 (82.17%), Postives = 146/157 (92.99%), Query Frame = 1 

Query: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60
           MSD+EHHFE+ +++GASKTYPQ AG IRK G+IVIKNRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDDEHHFEA-SESGASKTYPQSAGNIRKGGHIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLRLPTD 120
           V IDIFTAKKLEDIVPSSHNCDVPHVNR DYQLIDI+EDGFVSLLTD+G TKDDL+LPTD
Sbjct: 61  VAIDIFTAKKLEDIVPSSHNCDVPHVNRVDYQLIDITEDGFVSLLTDSGGTKDDLKLPTD 120

Query: 121 DNLLSQIKDGFAEGKDLVVSVMSAMGEEQICALKDIG 158
           D L +Q++ GF EGKD+VVSVMS+MGEEQICA+K++G
Sbjct: 121 DGLTAQMRLGFDEGKDIVVSVMSSMGEEQICAVKEVG 156

[Close]
BLAST of CmoCh01G017130 vs. NCBI nr
Match: gi|764579485|ref|XP_011463671.1| (PREDICTED: mitotic checkpoint protein BUB3.3-like [Fragaria vesca subsp. vesca])

HSP 1 Score: 323.9 bits (829), Expect = 1.5e-85
Identity = 157/159 (98.74%), Postives = 159/159 (100.00%), Query Frame = 1 

Query: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 332 MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 391

Query: 61  VGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLRLPTD 120
           VGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLT+NGNTKDDLRLPTD
Sbjct: 392 VGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 451

Query: 121 DNLLSQIKDGFAEGKDLVVSVMSAMGEEQICALKDIGPK 160
           DNLL+QIKDGFAEGKDLVVSVMSAMGEEQICALKDIGPK
Sbjct: 452 DNLLTQIKDGFAEGKDLVVSVMSAMGEEQICALKDIGPK 490

[Close]
BLAST of CmoCh01G017130 vs. NCBI nr
Match: gi|1012005853|ref|XP_015943065.1| (PREDICTED: eukaryotic translation initiation factor 5A-2-like [Arachis duranensis])

HSP 1 Score: 323.2 bits (827), Expect = 2.6e-85
Identity = 157/160 (98.12%), Postives = 159/160 (99.38%), Query Frame = 1 

Query: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIK RPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLRLPTD 120
           VGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLT+NGNTKDDLRLPTD
Sbjct: 61  VGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120

Query: 121 DNLLSQIKDGFAEGKDLVVSVMSAMGEEQICALKDIGPKN 161
           D+LLSQIKDGFAEGKDLVVSVMSAMGEEQICALKDIGPKN
Sbjct: 121 DSLLSQIKDGFAEGKDLVVSVMSAMGEEQICALKDIGPKN 160

[Close]
BLAST of CmoCh01G017130 vs. NCBI nr
Match: gi|502151995|ref|XP_004508713.1| (PREDICTED: eukaryotic translation initiation factor 5A-2 [Cicer arietinum])

HSP 1 Score: 323.2 bits (827), Expect = 2.6e-85
Identity = 156/160 (97.50%), Postives = 160/160 (100.00%), Query Frame = 1 

Query: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLRLPTD 120
           VGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLT+NGNTKDDL+LPTD
Sbjct: 61  VGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLKLPTD 120

Query: 121 DNLLSQIKDGFAEGKDLVVSVMSAMGEEQICALKDIGPKN 161
           D+LL+QIKDGFAEGKDLVVSVMSAMGEEQICALKDIGPKN
Sbjct: 121 DSLLTQIKDGFAEGKDLVVSVMSAMGEEQICALKDIGPKN 160

[Close]
BLAST of CmoCh01G017130 vs. NCBI nr
Match: gi|33325117|gb|AAQ08191.1| (eukaryotic translation initiation factor 5A isoform I [Hevea brasiliensis])

HSP 1 Score: 322.8 bits (826), Expect = 3.4e-85
Identity = 156/160 (97.50%), Postives = 159/160 (99.38%), Query Frame = 1 

Query: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLRLPTD 120
           VGIDIF AKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLT+NGNTKDDLRLPTD
Sbjct: 61  VGIDIFNAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120

Query: 121 DNLLSQIKDGFAEGKDLVVSVMSAMGEEQICALKDIGPKN 161
           +NLLSQIKDGFAEGKDLVV+VMSAMGEEQICALKDIGPKN
Sbjct: 121 ENLLSQIKDGFAEGKDLVVTVMSAMGEEQICALKDIGPKN 160

[Close]
BLAST of CmoCh01G017130 vs. NCBI nr
Match: gi|747058428|ref|XP_011075552.1| (PREDICTED: mitotic checkpoint protein BUB3.3-like [Sesamum indicum])

HSP 1 Score: 322.8 bits (826), Expect = 3.4e-85
Identity = 157/159 (98.74%), Postives = 158/159 (99.37%), Query Frame = 1 

Query: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIK RPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 345 MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 404

Query: 61  VGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLRLPTD 120
           VGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLRLPTD
Sbjct: 405 VGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLRLPTD 464

Query: 121 DNLLSQIKDGFAEGKDLVVSVMSAMGEEQICALKDIGPK 160
           +NLLSQIKDGFAEGKDLVVSVMSAMGEEQICALKDIGPK
Sbjct: 465 ENLLSQIKDGFAEGKDLVVSVMSAMGEEQICALKDIGPK 503

The following BLAST results are available for this feature:
BLAST of CmoCh01G017130 vs. Swiss-Prot
Match NameE-valueIdentityDescription
IF5A_MANES5.8e-8594.38Eukaryotic translation initiation factor 5A OS=Manihot esculenta PE=2 SV=2[more]
IF5A2_NICPL2.2e-8495.60Eukaryotic translation initiation factor 5A-2 OS=Nicotiana plumbaginifolia GN=EI... [more]
IF5A1_NICPL4.9e-8493.71Eukaryotic translation initiation factor 5A-1 OS=Nicotiana plumbaginifolia GN=EI... [more]
IF5A1_TOBAC4.9e-8493.71Eukaryotic translation initiation factor 5A-1 OS=Nicotiana tabacum GN=EIF-5A1 PE... [more]
IF5A5_SOLTU1.4e-8393.08Eukaryotic translation initiation factor 5A-5 OS=Solanum tuberosum GN=EIF5A5 PE=... [more]
BLAST of CmoCh01G017130 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A061EHP3_THECC2.4e-8598.11Eukaryotic elongation factor 5A-1 isoform 3 (Fragment) OS=Theobroma cacao GN=TCM... [more]
Q71F50_HEVBR2.4e-8597.50Eukaryotic translation initiation factor 5A OS=Hevea brasiliensis GN=eIF-5A PE=2... [more]
A0A061EBN4_THECC2.4e-8598.11Eukaryotic translation initiation factor 5A OS=Theobroma cacao GN=TCM_011621 PE=... [more]
A1Z3W7_ROSCH3.1e-8598.11Eukaryotic translation initiation factor 5A OS=Rosa chinensis PE=2 SV=1[more]
J7LMM2_ARAHY4.1e-8597.50Eukaryotic translation initiation factor 5A OS=Arachis hypogaea GN=IF5A PE=2 SV=... [more]
BLAST of CmoCh01G017130 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G13950.12.7e-8091.19 eukaryotic elongation factor 5A-1[more]
AT1G69410.19.6e-7886.16 eukaryotic elongation factor 5A-3[more]
AT1G26630.13.2e-7382.17 Eukaryotic translation initiation factor 5A-1 (eIF-5A 1) protein[more]
BLAST of CmoCh01G017130 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|764579485|ref|XP_011463671.1|1.5e-8598.74PREDICTED: mitotic checkpoint protein BUB3.3-like [Fragaria vesca subsp. vesca][more]
gi|1012005853|ref|XP_015943065.1|2.6e-8598.13PREDICTED: eukaryotic translation initiation factor 5A-2-like [Arachis duranensi... [more]
gi|502151995|ref|XP_004508713.1|2.6e-8597.50PREDICTED: eukaryotic translation initiation factor 5A-2 [Cicer arietinum][more]
gi|33325117|gb|AAQ08191.1|3.4e-8597.50eukaryotic translation initiation factor 5A isoform I [Hevea brasiliensis][more]
gi|747058428|ref|XP_011075552.1|3.4e-8598.74PREDICTED: mitotic checkpoint protein BUB3.3-like [Sesamum indicum][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001884IF5A-like
IPR008991Translation_prot_SH3-like_sf
IPR012340NA-bd_OB-fold
IPR014722Rib_L2_dom2
IPR019769Trans_elong_IF5A_hypusine_site
IPR020189Transl_elong_IF5A_C
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO:0003746translation elongation factor activity
GO:0043022ribosome binding
Vocabulary: Biological Process
TermDefinition
GO:0045901positive regulation of translational elongation
GO:0045905positive regulation of translational termination
GO:0006452translational frameshifting
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0045901 positive regulation of translational elongation
biological_process GO:0045905 positive regulation of translational termination
biological_process GO:0006446 regulation of translational initiation
biological_process GO:0006452 translational frameshifting
biological_process GO:0006413 translational initiation
cellular_component GO:0005840 ribosome
cellular_component GO:0005575 cellular_component
molecular_function GO:0043022 ribosome binding
molecular_function GO:0003746 translation elongation factor activity
molecular_function GO:0003743 translation initiation factor activity
molecular_function GO:0003723 RNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh01G017130.1CmoCh01G017130.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001884Translation elongation factor IF5APIRPIRSF003025Transl_init_eIF5Acoord: 1..157
score: 3.2
IPR001884Translation elongation factor IF5APANTHERPTHR11673TRANSLATION INITIATION FACTOR 5A-RELATEDcoord: 2..159
score: 2.3E
IPR001884Translation elongation factor IF5ATIGRFAMsTIGR00037TIGR00037coord: 17..153
score: 2.5
IPR008991Translation protein SH3-like domainunknownSSF50104Translation proteins SH3-like domaincoord: 15..93
score: 2.41
IPR012340Nucleic acid-binding, OB-foldGENE3DG3DSA:2.40.50.140coord: 86..158
score: 6.2
IPR012340Nucleic acid-binding, OB-foldunknownSSF50249Nucleic acid-binding proteinscoord: 86..156
score: 9.14
IPR014722Ribosomal protein L2 domain 2GENE3DG3DSA:2.30.30.30coord: 15..84
score: 1.7
IPR019769Translation elongation factor, IF5A, hypusine sitePROSITEPS00302IF5A_HYPUSINEcoord: 50..57
scor
IPR020189Translation elongation factor, IF5A C-terminalPFAMPF01287eIF-5acoord: 85..154
score: 9.7
IPR020189Translation elongation factor, IF5A C-terminalSMARTSM01376eIF_5a_2coord: 85..154
score: 1.7
NoneNo IPR availablePANTHERPTHR11673:SF8SUBFAMILY NOT NAMEDcoord: 2..159
score: 2.3E

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh01G017130Cucsa.271540Cucumber (Gy14) v1cgycmoB0748
CmoCh01G017130CmaCh09G004110Cucurbita maxima (Rimu)cmacmoB050
CmoCh01G017130CmaCh01G016640Cucurbita maxima (Rimu)cmacmoB468
CmoCh01G017130Cla018732Watermelon (97103) v1cmowmB460
CmoCh01G017130Cla021024Watermelon (97103) v1cmowmB435
CmoCh01G017130Csa4G651970Cucumber (Chinese Long) v2cmocuB463
CmoCh01G017130MELO3C016963Melon (DHL92) v3.5.1cmomeB424
CmoCh01G017130ClCG05G016320Watermelon (Charleston Gray)cmowcgB413
CmoCh01G017130ClCG06G012390Watermelon (Charleston Gray)cmowcgB421
CmoCh01G017130ClCG08G013700Watermelon (Charleston Gray)cmowcgB433
CmoCh01G017130CSPI04G26250Wild cucumber (PI 183967)cmocpiB467
CmoCh01G017130Lsi04G013360Bottle gourd (USVL1VR-Ls)cmolsiB416
CmoCh01G017130Cp4.1LG06g03020Cucurbita pepo (Zucchini)cmocpeB467
CmoCh01G017130MELO3C016963.2Melon (DHL92) v3.6.1cmomedB488
CmoCh01G017130CsaV3_4G036580Cucumber (Chinese Long) v3cmocucB0553
CmoCh01G017130Cla97C06G121600Watermelon (97103) v2cmowmbB471
CmoCh01G017130Cla97C05G097300Watermelon (97103) v2cmowmbB462
CmoCh01G017130Bhi02G000688Wax gourdcmowgoB0634
CmoCh01G017130Bhi09G002479Wax gourdcmowgoB0601
CmoCh01G017130CsGy4G024590Cucumber (Gy14) v2cgybcmoB486
CmoCh01G017130Carg02841Silver-seed gourdcarcmoB0874
CmoCh01G017130Carg10759Silver-seed gourdcarcmoB1045
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmoCh01G017130CmoCh09G004160Cucurbita moschata (Rifu)cmocmoB020
The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh01G017130Cucurbita pepo (Zucchini)cmocpeB448
CmoCh01G017130Bottle gourd (USVL1VR-Ls)cmolsiB425