CmoCh01G017090 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh01G017090
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Transcription initiation factor TFIID subunit 5
Location	Cmo_Chr01 : 12828508 .. 12831035 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TTCACCTTCCGGTTTCTTTGAGCGAGAAGGAGAAGAAAGCAAGTTCGAGCGGTAGAAAAGTGCGGGAAGGGGAAGGGAGAGCGCGCAATTTGTGGAGGAAGGAAGTGAAATACTGAATGTTGCAGAATGGACGAAGAACAGATAGCGGATTTTTTCAGGAGTTTCGTCAGAACAAGACTAATTCTTCGTGTTCCATTGATCTCGACTTCGCCAAGCACTTGCATTCTTGCTCCGAGTACTTTCTCGCCCCTTATAATTCATCTCGATTACCTATTTTCATTTGCATTCTGTAATTCTTGGGTGATTTGAACATTTGAATCAGTCAATCCTTCGTTTCCTGTTTTTTTATGTTGAGAAATTGAAGATTTTAATTTTTTTTTTTTCTGGAGCTATGGTTTTGGAGAGTGGTTGTCAGCTAGAACTTTTGGTGTGGTGTTAAGGATGATGGCTTTAAGAACTAGGGCGAGTGGATTTCTCGTACGATTACTTGATTTTAAATGCTTTTGTTTATAACTTAGCTAATGTAAATCCCTCGAGAGCTACTGGTAGTATTCGCATCTGATATGTACTTTTCCGGGGGCTTAGGAGCTTACTCGAAACCACTTCATTTAGAAGAAATTGCAAAAAGATTATTGGAGAGAGAGTTCAACCTGTACATAGCTGACATATTTTGGATGAAAAGGATTATGTTCAATGCAGTAGGCAGCTTTTATAGCATTCGTCCAGAGTACTTCATTTTTTTTTCCTTTGGATAAGATAACCCCACCCAAATGTTCCATACAAGTTGATGAGGAATTGTGAAGGGCCCCATTCCGATTTCAACTTCGTTGATAATGGAGTTCCGAAAAATCGTGTTGAAGGAACAATGAACTAATAGATAGGCTTGACTTTCTTCTCCACTCCTGCAGAAGATACACCATCTTAGGAGAAAGCTTCAATAGGGAATCTCTTTTTGAGTTCTTTCTGCTGTTTTCAAATCTCCTTGAAGCACAGGCCAAATAATATTATCATCTTCTCCAGAGTCTTAGTTTTCCAGATAACATTTGTCAGATTGGTGGACGAACTACTATGAGTGGCCGTCAAAGGTGAAAATAAGAATTTAGAAGAAAATGTATCCGAAGCTTCAAGGCCTTACCTTCATTTTTCACTTTGGATGATTGGACTACTTTTGAGAACTTATTAAATTCTCCTTCATAAAAGGACAGTAATCTTTGTTTGCCTGTTATCCATCAATTACAAGTCGGCCCTCTTATTTTAGCATAGAATCTTTATGCATGCCCTCATGCATGTAATGTCACATTAGAAATTCTCTTTGTGATTTCTCTTTTCTTGCTTTTGGGTTTGGGAGGATGCCAACAATGTTATGGTTGCCATCCTCATTCTTGTTTATTTGCTTCTTTTGTTAACATATTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTTTTTTTTTTTCTTTTTCTTTTTGCTCTTTTATGATTGTTCTTTCCAGAGCAGAGAATATTCCAGCCAGATACCTTGAAGGATATAAAAAGCTTAGGTCCTGGGCTTGCAACTCACTAGATTTGTACAAGGTAAGTAGTTGTTTTATTTTTTTCCTTAAAATTATAATTCATATTGAACTTTTTTCTTCCTGTAATGACCGCCTTACTTCTTGCATTTTCCGCATGAGTTGCTTCGAGTGCTATATCCTGTGTTTATTCATTGTTTCATAGATCTTGTGGCTAAAGGACATGCCCAAGAAGGTCTGCAAACTAATATCTTTCTTGACAGTCTCATGTAATGGAGGAAAATATGATCAAATTTTTTGTATTTTGCTTGATATCTGCCAGCTTGAACCTTTTTCAATAGGTTCCGTGAAGACCATGAAATGA

mRNA sequence

TTCACCTTCCGGTTTCTTTGAGCGAGAAGGAGAAGAAAGCAAGTTCGAGCGGTAGAAAAGTGCGGGAAGGGGAAGGGAGAGCGCGCAATTTGTGGAGGAAGGAAGTGAAATACTGAATGTTGCAGAATGGACGAAGAACAGATAGCGGATTTTTTCAGGAGTTTCGTCAGAACAAGACTAATTCTTCGTGTTCCATTGATCTCGACTTCGCCAAGCACTTGCATTCTTGCTCCGAAGCAGAGAATATTCCAGCCAGATACCTTGAAGGATATAAAAAGCTTAGGTCCTGGGCTTGCAACTCACTAGATTTGTACAAGATCTTGTGGCTAAAGGACATGCCCAAGAAGGTCTGCAAACTAATATCTTTCTTGACAGTCTCATGTAATGGAGGAAAATATGATCAAATTTTTTGTATTTTGCTTGATATCTGCCAGCTTGAACCTTTTTCAATAGGTTCCGTGAAGACCATGAAATGA

Coding sequence (CDS)

ATGTTGCAGAATGGACGAAGAACAGATAGCGGATTTTTTCAGGAGTTTCGTCAGAACAAGACTAATTCTTCGTGTTCCATTGATCTCGACTTCGCCAAGCACTTGCATTCTTGCTCCGAAGCAGAGAATATTCCAGCCAGATACCTTGAAGGATATAAAAAGCTTAGGTCCTGGGCTTGCAACTCACTAGATTTGTACAAGATCTTGTGGCTAAAGGACATGCCCAAGAAGGTCTGCAAACTAATATCTTTCTTGACAGTCTCATGTAATGGAGGAAAATATGATCAAATTTTTTGTATTTTGCTTGATATCTGCCAGCTTGAACCTTTTTCAATAGGTTCCGTGAAGACCATGAAATGA

Homology

[Close]

BLAST of CmoCh01G017090 vs. Swiss-Prot
Match: TAF5_ARATH (Transcription initiation factor TFIID subunit 5 OS=Arabidopsis thaliana GN=TAF5 PE=1 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 6.9e-06
Identity = 27/55 (49.09%), Postives = 34/55 (61.82%), Query Frame = 1


Query: 17 RQNKTNSSCSIDL----DFAKHLHSCSEAENIPARYLEGYKKLRSWACNSLDLYK 68
          + N  +S  S+D     +  K + S S+ E+ P RY EGY KLRSWA NSLDLYK
Sbjct: 32 QNNNGSSFTSVDYHNDPELTKLIRSFSQQEDDPTRYREGYSKLRSWAYNSLDLYK 86

[Close]

BLAST of CmoCh01G017090 vs. TrEMBL
Match: A0A0A0L139_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G652030 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 1.6e-14
Identity = 45/65 (69.23%), Postives = 50/65 (76.92%), Query Frame = 1


Query: 6  RRTDSGFFQEFRQNKTNSSCS---IDLDFAKHLHSCSEAENIPARYLEGYKKLRSWACNS 65
          + T+  F +E RQNKTNSS     ID+D AKHL S SEAENIPA+YLEGY KLRSWA NS
Sbjct: 20 KETEQAFQEELRQNKTNSSSPSSFIDVDVAKHLLSFSEAENIPAKYLEGYSKLRSWAYNS 79

Query: 66 LDLYK 68
          LDLYK
Sbjct: 80 LDLYK 84

[Close]

BLAST of CmoCh01G017090 vs. TrEMBL
Match: G7J9V2_MEDTR (TBP-associated factor 5 OS=Medicago truncatula GN=MTR_3g106080 PE=4 SV=2)

HSP 1 Score: 68.6 bits (166), Expect = 6.0e-09
Identity = 33/64 (51.56%), Postives = 47/64 (73.44%), Query Frame = 1


Query: 6  RRTDSGFFQEFRQNKTNSSCS--IDLDFAKHLHSCSEAENIPARYLEGYKKLRSWACNSL 65
          ++T+  F +EF+QNKT+SS +  ++ D A HLH+ S+ EN PARY  GY +LR+W  +SL
Sbjct: 20 KQTEKVFQEEFQQNKTSSSSNSILEPDIANHLHAFSQLENGPARYHNGYSRLRTWTYSSL 79

Query: 66 DLYK 68
          DLYK
Sbjct: 80 DLYK 83

[Close]

BLAST of CmoCh01G017090 vs. TrEMBL
Match: D7SUX1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0008g05780 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 2.3e-08
Identity = 38/70 (54.29%), Postives = 47/70 (67.14%), Query Frame = 1


Query: 6  RRTDSGFFQEFRQNKT----NSSCSI----DLDFAKHLHSCSEAENIPARYLEGYKKLRS 65
          ++T+  F +E  Q++     NSS SI    D D AKH+ S SE+ENIPARY EGY KLRS
Sbjct: 20 KQTELAFQEEHHQHQNQQTKNSSSSISSSTDPDIAKHILSFSESENIPARYHEGYSKLRS 79

Query: 66 WACNSLDLYK 68
          W  +SLDLYK
Sbjct: 80 WTYSSLDLYK 89

[Close]

BLAST of CmoCh01G017090 vs. TrEMBL
Match: M5XLG5_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa002437mg PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.3e-06
Identity = 32/68 (47.06%), Postives = 44/68 (64.71%), Query Frame = 1


Query: 6  RRTDSGFFQEFRQNKTNSSCSI------DLDFAKHLHSCSEAENIPARYLEGYKKLRSWA 65
          ++T++ F +E  +N  NSS  I      D D AKH+ S SE E+ PA+Y +GY KLRSW 
Sbjct: 20 KQTENAFQEELNKNTNNSSSPISFNSQFDPDVAKHILSFSEFEDGPAKYQDGYAKLRSWT 79

Query: 66 CNSLDLYK 68
           +SLDLY+
Sbjct: 80 YSSLDLYR 87

[Close]

BLAST of CmoCh01G017090 vs. TrEMBL
Match: A0A0S3RBV1_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.02G073800 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.6e-06
Identity = 31/65 (47.69%), Postives = 44/65 (67.69%), Query Frame = 1


Query: 7  RTDSGFFQEFRQNKTNSSCS----IDLDFAKHLHSCSEAENIPARYLEGYKKLRSWACNS 66
          +T+  F +EFR NKT +S S    ++ D A HL + S+ E+ PAR+ +GY KLR+W  +S
Sbjct: 21 QTEKIFQEEFRHNKTTNSSSSNSLLEPDIANHLLAFSQLESGPARFHDGYSKLRTWTYSS 80

Query: 67 LDLYK 68
          LDLYK
Sbjct: 81 LDLYK 85

[Close]

BLAST of CmoCh01G017090 vs. TAIR10
Match: AT5G25150.1 (AT5G25150.1 TBP-associated factor 5)

HSP 1 Score: 51.6 bits (122), Expect = 3.9e-07
Identity = 27/55 (49.09%), Postives = 34/55 (61.82%), Query Frame = 1


Query: 17 RQNKTNSSCSIDL----DFAKHLHSCSEAENIPARYLEGYKKLRSWACNSLDLYK 68
          + N  +S  S+D     +  K + S S+ E+ P RY EGY KLRSWA NSLDLYK
Sbjct: 32 QNNNGSSFTSVDYHNDPELTKLIRSFSQQEDDPTRYREGYSKLRSWAYNSLDLYK 86

[Close]

BLAST of CmoCh01G017090 vs. NCBI nr
Match: gi|449455529|ref|XP_004145505.1| (PREDICTED: transcription initiation factor TFIID subunit 5 [Cucumis sativus])

HSP 1 Score: 87.0 bits (214), Expect = 2.4e-14
Identity = 45/65 (69.23%), Postives = 50/65 (76.92%), Query Frame = 1


Query: 6  RRTDSGFFQEFRQNKTNSSCS---IDLDFAKHLHSCSEAENIPARYLEGYKKLRSWACNS 65
          + T+  F +E RQNKTNSS     ID+D AKHL S SEAENIPA+YLEGY KLRSWA NS
Sbjct: 20 KETEQAFQEELRQNKTNSSSPSSFIDVDVAKHLLSFSEAENIPAKYLEGYSKLRSWAYNS 79

Query: 66 LDLYK 68
          LDLYK
Sbjct: 80 LDLYK 84

[Close]

BLAST of CmoCh01G017090 vs. NCBI nr
Match: gi|659104236|ref|XP_008452860.1| (PREDICTED: transcription initiation factor TFIID subunit 5 [Cucumis melo])

HSP 1 Score: 84.3 bits (207), Expect = 1.5e-13
Identity = 43/65 (66.15%), Postives = 48/65 (73.85%), Query Frame = 1


Query: 6  RRTDSGFFQEFRQNKTNSSCS---IDLDFAKHLHSCSEAENIPARYLEGYKKLRSWACNS 65
          + T+  F +E R NKTN S     +D+D AKHL S SEAENIPARYLEGY KLRSWA NS
Sbjct: 20 KETEQAFQEELRHNKTNCSSPSSLVDIDVAKHLLSFSEAENIPARYLEGYSKLRSWAYNS 79

Query: 66 LDLYK 68
          LDLYK
Sbjct: 80 LDLYK 84

[Close]

BLAST of CmoCh01G017090 vs. NCBI nr
Match: gi|922376400|ref|XP_003603301.2| (TBP-associated factor 5 [Medicago truncatula])

HSP 1 Score: 68.6 bits (166), Expect = 8.7e-09
Identity = 33/64 (51.56%), Postives = 47/64 (73.44%), Query Frame = 1


Query: 6  RRTDSGFFQEFRQNKTNSSCS--IDLDFAKHLHSCSEAENIPARYLEGYKKLRSWACNSL 65
          ++T+  F +EF+QNKT+SS +  ++ D A HLH+ S+ EN PARY  GY +LR+W  +SL
Sbjct: 20 KQTEKVFQEEFQQNKTSSSSNSILEPDIANHLHAFSQLENGPARYHNGYSRLRTWTYSSL 79

Query: 66 DLYK 68
          DLYK
Sbjct: 80 DLYK 83

[Close]

BLAST of CmoCh01G017090 vs. NCBI nr
Match: gi|359475836|ref|XP_003631761.1| (PREDICTED: transcription initiation factor TFIID subunit 5 [Vitis vinifera])

HSP 1 Score: 66.6 bits (161), Expect = 3.3e-08
Identity = 38/70 (54.29%), Postives = 47/70 (67.14%), Query Frame = 1


Query: 6  RRTDSGFFQEFRQNKT----NSSCSI----DLDFAKHLHSCSEAENIPARYLEGYKKLRS 65
          ++T+  F +E  Q++     NSS SI    D D AKH+ S SE+ENIPARY EGY KLRS
Sbjct: 20 KQTELAFQEEHHQHQNQQTKNSSSSISSSTDPDIAKHILSFSESENIPARYHEGYSKLRS 79

Query: 66 WACNSLDLYK 68
          W  +SLDLYK
Sbjct: 80 WTYSSLDLYK 89

[Close]

BLAST of CmoCh01G017090 vs. NCBI nr
Match: gi|950978514|ref|XP_014501696.1| (PREDICTED: transcription initiation factor TFIID subunit 5-like [Vigna radiata var. radiata])

HSP 1 Score: 63.2 bits (152), Expect = 3.6e-07
Identity = 32/65 (49.23%), Postives = 46/65 (70.77%), Query Frame = 1


Query: 7  RTDSGFFQEFRQNKTNSSCS----IDLDFAKHLHSCSEAENIPARYLEGYKKLRSWACNS 66
          +T+  F +EF+QNKTN+S S    ++ D A HL + S+ E+ PAR+ +GY KLR+W  +S
Sbjct: 21 QTEKIFQEEFQQNKTNNSSSSNSLLEPDIANHLLAFSQLESGPARFHDGYSKLRTWTYSS 80

Query: 67 LDLYK 68
          LDLYK
Sbjct: 81 LDLYK 85

The following BLAST results are available for this feature:

BLAST of CmoCh01G017090 vs. Swiss-Prot


Match Name	E-value	Identity	Description
TAF5_ARATH	6.9e-06	49.09	Transcription initiation factor TFIID subunit 5 OS=Arabidopsis thaliana GN=TAF5 ...	[more]

BLAST of CmoCh01G017090 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L139_CUCSA	1.6e-14	69.23	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G652030 PE=4 SV=1	[more]
G7J9V2_MEDTR	6.0e-09	51.56	TBP-associated factor 5 OS=Medicago truncatula GN=MTR_3g106080 PE=4 SV=2	[more]
D7SUX1_VITVI	2.3e-08	54.29	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0008g05780 PE=4 SV=...	[more]
M5XLG5_PRUPE	1.3e-06	47.06	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa002437mg PE=4 SV=1	[more]
A0A0S3RBV1_PHAAN	1.6e-06	47.69	Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.02G073800 PE=...	[more]

BLAST of CmoCh01G017090 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G25150.1	3.9e-07	49.09	TBP-associated factor 5	[more]

BLAST of CmoCh01G017090 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449455529\|ref\|XP_004145505.1\|	2.4e-14	69.23	PREDICTED: transcription initiation factor TFIID subunit 5 [Cucumis sativus]	[more]
gi\|659104236\|ref\|XP_008452860.1\|	1.5e-13	66.15	PREDICTED: transcription initiation factor TFIID subunit 5 [Cucumis melo]	[more]
gi\|922376400\|ref\|XP_003603301.2\|	8.7e-09	51.56	TBP-associated factor 5 [Medicago truncatula]	[more]
gi\|359475836\|ref\|XP_003631761.1\|	3.3e-08	54.29	PREDICTED: transcription initiation factor TFIID subunit 5 [Vitis vinifera]	[more]
gi\|950978514\|ref\|XP_014501696.1\|	3.6e-07	49.23	PREDICTED: transcription initiation factor TFIID subunit 5-like [Vigna radiata v...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0051276	chromosome organization
biological_process	GO:0007059	chromosome segregation
biological_process	GO:0007127	meiosis I
biological_process	GO:0050794	regulation of cellular process
biological_process	GO:0044710	single-organism metabolic process
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh01G017090.1	CmoCh01G017090.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	SSF160897	Taf5 N-terminal domain-like	coord: 35..68 score: 7.8

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh01G017090	Cp4.1LG02g05430	Cucurbita pepo (Zucchini)	cmocpeB448

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh01G017090	Cucumber (Gy14) v2	cgybcmoB486
CmoCh01G017090	Melon (DHL92) v3.6.1	cmomedB488
CmoCh01G017090	Silver-seed gourd	carcmoB0874
CmoCh01G017090	Silver-seed gourd	carcmoB1045
CmoCh01G017090	Cucumber (Chinese Long) v3	cmocucB0553
CmoCh01G017090	Watermelon (97103) v2	cmowmbB462
CmoCh01G017090	Watermelon (97103) v2	cmowmbB471
CmoCh01G017090	Wax gourd	cmowgoB0601
CmoCh01G017090	Wax gourd	cmowgoB0634
CmoCh01G017090	Cucurbita moschata (Rifu)	cmocmoB020
CmoCh01G017090	Cucumber (Gy14) v1	cgycmoB0748
CmoCh01G017090	Cucurbita maxima (Rimu)	cmacmoB050
CmoCh01G017090	Cucurbita maxima (Rimu)	cmacmoB468
CmoCh01G017090	Wild cucumber (PI 183967)	cmocpiB467
CmoCh01G017090	Cucumber (Chinese Long) v2	cmocuB463
CmoCh01G017090	Melon (DHL92) v3.5.1	cmomeB424
CmoCh01G017090	Watermelon (Charleston Gray)	cmowcgB413
CmoCh01G017090	Watermelon (Charleston Gray)	cmowcgB421
CmoCh01G017090	Watermelon (Charleston Gray)	cmowcgB433
CmoCh01G017090	Watermelon (97103) v1	cmowmB435
CmoCh01G017090	Watermelon (97103) v1	cmowmB460
CmoCh01G017090	Cucurbita pepo (Zucchini)	cmocpeB467
CmoCh01G017090	Bottle gourd (USVL1VR-Ls)	cmolsiB425