CmoCh01G017080 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh01G017080
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	WD40-repeat containing protein
Location	Cmo_Chr01 : 12821154 .. 12827308 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTGAAGCTAATTCGGCGTCTATGGCACCACAAGTGAAGCCAGAGCTTGCTTTACTCGTAATGTATTTTCTTGAATCTTGTATTATGTTATTTTGCTGCTCTCAGTCATAATATGTAGCTCTTAGCCAAGTGATTGCGGTGCTACTACAGCCACACTGCTCTGACTTAGTATGGGTCAGTGGATACAATCGGCCATGTGCTGAGTATTATCTTTTTCTATGATGCTAGCTTTTGTTAGATGTTATGGGGTTAGCTCATGATCTAATTATGGTTACCTCCTCATATTAAGGCCGAGTCTAACAAAGTTTTTGTGTAGAATTTGAAGCATCATAGATGTCAGAGGGAATGATGTGGGACCAGTTCTTTGCTGAAGACGTGTAAACAGTAACGGTATTAGTTTTTCTTGCTATTGATTTGTCCTGTTGATTTCTTTCAGTTCAACAGAGGTGGAACAATCTATTCTTGAAGACTTGAGAAGCCGTGTGCAGTTGAGTTCTGTTGCTCTGCCATCAGTCAGCCTTTATAATGAGTATTTATCTACCTTCCTTTCTGTTCCCATTGACAGTTTATTCAGTCTCAATGTTCATGCAGTTGATATCATTGATCCTGATGTAGTTTAAACTGTTCATCAATATGCCTGGTGGAGCTTTGAAGGTCTTCTTTGTAAGTTGCTTAGTACGGCCTAATTGTTGGGTGCTCACCTCTAAAATCTTGGTGGGTTTCTGTGCAGGTATGGGACATGGCAAAGCTGGGACAACAAGCTGGCAATAGTAAGTCTGTTAAGTAAGTTTAACTATCATGGGATGCCTTTTCTGTTTCTGGCTTTTTTGTTTGTAATATTATACTGTTAATATATTATGCTTTAAGAAAGATTAAAAAAAAATCATAAAAAGAATTATGGATAAAAACCTTTTATTGTATACCACTGCTTATTTTAATTTTCATATGATATAACAATAGCCAGGGGCTCTGGAACATAGAGCAGTTTTGTTATTTCAAGGCCTCCGTGTTTATCGTAGTAAATTGGTGTGGATTTATGAGTCTAAACTCATGCTCAAATGTCAAGTTTATAGACATCAACTACTGATTTCTTACAGTTTAACATATTGTTATTGATAACTCGTGTTTACTCTTTAGAGATTTTCTGGTTTTTGATAATACGAACTGAAGTTGTTTAAATTCTATAGTGCTTTTCATTCCCTTCCATCCTCCTAATTCTCGAACAATTTCCTATCTCCTACTTCAGGAGACCTATTCATCTTCTCCATGCACCAATTTTGAGTTAAGTCTCCAACTATTTACCATTTCCCTCTTCCAGATTTCATTATCAGTTAGAAAAGCTTGTTTTCTCTTGGTGTCACACTAGGCATCATCATGAGTTTTTCTTTAGAATTTTTTTTGCTCAGATATTTTCAGAATGGATTTTGACCTTCGCTATCACCTCTACCAGCTGTTTTGCAGGGTGAAAACGGCTTGTATACTAGTGATCAAATGAGAGGGCATACAAGTGGCAAGTGGTCTTATACATTGTTTCAAGGTCGTTCTGGGCCTGTTCACTCTGCCACTTTCAGTCCCATTGGGGATTTTGTTCTTTTCTCCTCTGCAGACACAACTGGTATGATCTTAATTGCACTTTTGTTTTCTTTCTTGAGATTATGAATATTTCTGTTGTACTGTTGCAGTTCGTTTGTGGAGAATAAAACTAAACGCCAGTCTTGTTTGCTACAAAGGTCACAATTACCCAGTATGGGATGTTCAGGTAATGATTTTATTAGATATATGTGGTTGCTGCGTAGTTTAACTGGTGTATAGGCTATCAGTATCCGTTAGAGTTTGTTAAAGTGAAATATGGAGTGAGGAGGTTGTTAGCCGTGAGTTAGAGTGTCAGAAATAGAGTCCAGCAATGATGAGGAAGGGCGACAATTTTCTAGTTCTCTTTCACTATTTGGTCCCATCACTAAAGGTCTTCACTCTTGACTTCATTATTCAACATTTGTAGTTGTATCACACGGGAGACGCAGTGAGAGATGCTGTTCATTAATCTACTCAAATTTGTAATTATTTAATCCTCAACGTCTTTTGATGTAGAATATCTCAAGTATTTGAGTTGCGATCTGAAACAAAGTAACTTAGCCTATACGGAGGGGGAAAAAAGAGGGAGAAAAAAAAAAAAAATTCAAGCCGTTCATAAAAGAGGTGATATCATGAGGATTGGAACTTTTAAGGAAAGGGGTTGGTTTTTCTTGAATCATCGTCGTTCTAGGATGTAAGGCTTTCATTGATTCTTCTCATCATTTAGTTAGTAGGTAGCTGAAGAAGGAGGGTAAGAAATCTGACTATTTAGAAGCCCCTTGCAAACACACTGCGAGGATGTCTCACTCTTACTACTCCCACCTCCCAACCAAAAACATAAAATAAAAATAATAGTAATAATAATAAAAGAAAAACAAAAGAAGAAGAAGGTATGTGATAGATTCTTGAGTGTCCTAAAACCATGCCTCTTTCTCTTTTAATACATGCTCGCAACTTTTCTAGGATATTTGGAATTCAGCTTCTTTTTCTGTGAACATATACACAACTCCCTACAGCTCTTCTAGAAAAAAAGGGGAGAAGTGATTTTCGAGCAGAAAAAATGGAGTTGTTAAATAATAGTATTCCCATACTTCCTAATATAAGACCTGATAGGCAAGCTATCGTCCCACTAAAAAAAGTATTCTTCTGATAGGGCTTGTTCTTGGTCAGAAATAGTGAAATCACCTTTTCTATTCTTTCGCCGGACCTTGCGACTAAGAAAGATGTTCACTTAAAATATCTCATATACGTAGGAAAGGACGTTTGCTAAAGTATAGAATAAGGATATAAAAACAAGAAGCAGTCCTGATCCTAGTATTTAAAGAGGGAAACAAAAACAAAGCACTGGGTGAAAAGACACAATCAAAGAAACAGACTTTTTTCAAATTACTAAGACGTGGACAGAGCAAGGGTTTGTTCATTAATTATACGTACTTTTAATAAAGAATTGAAGGGAGGTTAGGAGGCCGATTAATGGTTTGATACTGTGATCTTGAATGGTAACTCCTTTGCTTGGGTTAGTACGTAGTTTATGGGTGAACACCATATCTAAAAGAATTGATCTTGTTCCTTATTCCTTCTGTTGTTGTTCCTGTCTTCGCAAGGTGTTGTTCCTGTGTTTGCTTTGTTATTTTTTGAATTCTAGTTTCTTAATTCTTTATCGATAGAAAGGTTGCTCACTCTCTCTTTCTCAAGTTTCAATAGTCTTTTCTGTTTATACTTCATTTTAATCGCAGGACATTTGTCCGATGTGGATGTGAGCAGTTCATTCTTTATTCCTTCTATGATATTTTATTGCTAAGATATTAAGTTGGAACCATATGCAGCCATCCAAATATCTCTAAAAGCAGATCCATTTTTATATTTAGAATATTCAAGCAGATAGTGGGGTCATTTTTCTTCCTACCTGGGTTTGTCCTTTTCCCCTCAAATTTGAAGCATCATTCTCTCTCTGCATGCAGTCGTTTTCTTATTTGTAACTAGTCTTCTGCAGTACAATTCCCTCTCCCTTTAATAATGGAAGTCGTAATCGTAACACTGATTTTTTTTGTAGTTTAAAACCTTATCTTCGAGAACAAATATCTAAACTTTTTATTGATGATTTTTTTGTTGCTTGATCCTAATGTTTCTGGTAAATATGAACCATAACAAATCTCACGATCTCTAAAGTGTGTTCAATGGCATGCCAACTGCAATTACATCACAACTGGTTCAAGTGATAGAGCTGTTAGATTGTGGGATGTCGAAAGTGGGGAATGTGTTCGAATTTTCATGGGTCATAGGAGCATGATTCTATCGCTGGCAATGTCACCTGATGGTCAGTTCATGGCATCTGGTGACGAAGACGGTATGATTATGATGTGGGACCTATCACTTGGTCGCTGTGTTACACCTTTGATTGGACACACATCATGCGTTTGGACCCTTTCTTTCAGGTGGATAAAAGAAAAATTTTCACCCACCCCACATCCCTGCCTACATTCAGAGTTCAGATGTTGACATAAACAATCCTCCAATACTTGTTGTTTTCCACTTCAGTTGTGAGGGCTCTCTCCTTGCCCCTGGCTCTGATGATTGCTCAGTGAAATTATGGGACGTAAATTCAAGCTCAAAGGCACCAGGAATAGATGAAAAGTGAGTTCTCCCTAAAATAGTTTTAGATGTTTCAGTTAAAATTTGACATTAACAAAGTTAACGACTGTATGCATTGTACTGCAGAAGACTGAAAAGTGAGCCCCATAACTGTTATCTAAACTTGATTTCATTTTCTTTCTGATTAGGAATCTCTTATTTGCAGCTGGGGCTCTTTCCAAAAGTGCATTAACTGCTTGACACTCTTCCACAAACTTTGTAATCTTGTTCAATTAAATTTTCCTGATAAAATCTCTTTGAAATGTTCATTTATTGGCTATTTAAGAGTATATCATTTCCAGCCAAGCTTTTTGTGCAGAAGTAAGTCTTGACATTATCTTATCGTTAGAAATTCTGGAGTGATATGACACAATACTTGCAGGCCCTCACCTCACCTCACCTCAAATGATTGTATTGTAAAAGAGAATAAAGACGAGAAATTTTGCAGCAAAAAAAACAGATTGAGATAAGCAAAAAGTGAAAGGATATGAACTGTTTGTTCAATTGGGTATGTGGAAGTAAGGGAAAAAAAAAAAAAACAAGTGCATAAAAAAAAGGACAAGAACAAGAGTACCGATAAAAAGTGACAAACTTTCACTGTTTCTGAGGGCAGCGGATAGGCTGATAAAGTACTGCAATTACACCTGAAGTAAAGGTATCTTTTTTCACTTCTGTCATTTCAGTTTCAAATTGTACTGTTTTTTTCAGTCTTATTCTTCATTTACAATTTTATGAAAAGAAAGAAAAATGTACATGGAAGCTCATCAAGAACAGTAGATTCTGACTTGGTTCAGGCAATCTTAGAAATGATTCTCATGTTAACTGTTTATGAGCGCATTTAGTGCTAAAGCTCTGAAGTAAAATGTATACAGCTGCTGTACTTTTCCCTCCAACTTCTAAGCATTCAACAACAATCTAACCCTTGTTTTGCTTTGCCAAATCATTATATCATATGTTTAGAGCTTCAAAATTTGCTCCCATTGGTTGTTTATACTAAAATTTCATTCGTGCTTCTGACGACTGTGATTAGTTTAATGCGAACCGATAAGGTTACGTGTTCTTTCGTGTTTTTGGTGCTAGGTTCTCTCCTTGGGTGGCTCCAGCGTGTCGTACTAACTGGTTAGTGATTCAACCAATAGTCTCTCAGTTACACATTCTTGAACTGATGCACTGTTTAGAAGTGGGTCTACTTTGGGATGCTGCTAGTATTTTGACATTATCTAAGTCAGATACCAATAGATTTTCATCTCTTATGATTATTACAGTATGAACACCATGAAACTGGCTAAGGAAATTTAAATTTGTGTACTTGCTTTCTATATATGGTCTATTTTCTGCTCCCTACATCTCAAAACAAGAGAACTTATACAGCAATGTATATTCAAATTGTATTACCAAACCTACTAACTACTATCCATCTGGGTGCGGAAGTCCAAAAACCAATACGATTGAACTTTAGAGTATATGTTCAATCTAAAGTCATTGGCAGCATCAGCCAAACAATCATTTCCTACTTGAAACCAAGCTTTATAAATGAATGCCCAACAAAACATCCTGAATCAGAAGTCTAGATTTTGTTTCATGTCTAACCCTTTCGAAGTTTTCATTTGTAGAATGTGTCGTCGTATGATTCTTTTGACCTCGATGACATGGGGACGGCTTCGAGTCAAGCTCTGTCCAAGAATCGGCAATGGTAACTTTATTGTTCTCATTTATCTAGCATATATACAGTCAAAATCAATGCTATATTGTATATTTGTAAATTTGTGCGAGATTTTGACTAACTTTGTTGCAGTAAGCAACTCGACCTTGCTACAAGGAGTCAAACAATTGAAGTAATTCACTAGATTTTATGATTCATTACCATGTGAAGATCTTCATGTACTGATATGATATGAAATTATTCCCCAAGAACACAAGGAACTTCTATCTCTTCATTTACTTCCTTT

mRNA sequence

ATGGTTGAAGCTAATTCGGCGTCTATGGCACCACAAGTGAAGCCAGAGCTTGCTTTACTCGTAATTTCAACAGAGGTGGAACAATCTATTCTTGAAGACTTGAGAAGCCGTGTGCAGTTGAGTTCTGTTGCTCTGCCATCATTTAAACTGTTCATCAATATGCCTGGTGGAGCTTTGAAGGTATGGGACATGGCAAAGCTGGGACAACAAGCTGGCAATACTGTTTTGCAGGGTGAAAACGGCTTGTATACTAGTGATCAAATGAGAGGGCATACAAGTGGCAAGTGGTCTTATACATTGTTTCAAGGTCGTTCTGGGCCTGTTCACTCTGCCACTTTCAGTCCCATTGGGGATTTTGTTCTTTTCTCCTCTGCAGACACAACTGTTCGTTTGTGGAGAATAAAACTAAACGCCAGTCTTGTTTGCTACAAAGGTCACAATTACCCAGTATGGGATGTTCAGTGTGTTCAATGGCATGCCAACTGCAATTACATCACAACTGGTTCAAGTGATAGAGCTGTTAGATTGTGGGATGTCGAAAGTGGGGAATGTGTTCGAATTTTCATGGGTCATAGGAGCATGATTCTATCGCTGGCAATGTCACCTGATGGTCAGTTCATGGCATCTGGTGACGAAGACGGTATGATTATGATGTGGGACCTATCACTTGGTCGCTGTGTTACACCTTTGATTGGACACACATCATGCGTTTGGACCCTTTCTTTCAGTTGTGAGGGCTCTCTCCTTGCCCCTGGCTCTGATGATTGCTCAGTGAAATTATGGGACGTAAATTCAAGCTCAAAGGCACCAGGAATAGATGAAAAGAATCTCTTATTTGCAGCTGGGGCTCTTTCCAAAAGTGCATTAACTGCTTGACACTCTTCCACAAACTTTGCCCTCACCTCACCTCACCTCAAATGATTGTATTGTAAAAGAGAATAAAGACGAGAAATTTTGCAGCAAAAAAAACAGATTGAGATAAGCAAAAAGTGAAAGGATATGAACTGTTTGTTCAATTGGGTATGTGGAAGTAAGGGAAAAAAAAAAAAAACAAGTGCATAAAAAAAAGGACAAGAACAAGAGTACCGATAAAAAGTGACAAACTTTCACTGTTTCTGAGGGCAGCGGATAGGCTGATAAAGTACTGCAATTACACCTGAAGTAAAGGTTCTCTCCTTGGGTGGCTCCAGCGTGTCGTACTAACTGAATGTGTCGTCGTATGATTCTTTTGACCTCGATGACATGGGGACGGCTTCGAGTCAAGCTCTGTCCAAGAATCGGCAATGGTAACTTTATTGTTCTCATTTATCTAGCATATATACAGTCAAAATCAATGCTATATTGTATATTTGTAAATTTGTGCGAGATTTTGACTAACTTTGTTGCAGTAAGCAACTCGACCTTGCTACAAGGAGTCAAACAATTGAAGTAATTCACTAGATTTTATGATTCATTACCATGTGAAGATCTTCATGTACTGATATGATATGAAATTATTCCCCAAGAACACAAGGAACTTCTATCTCTTCATTTACTTCCTTT

Coding sequence (CDS)

ATGGTTGAAGCTAATTCGGCGTCTATGGCACCACAAGTGAAGCCAGAGCTTGCTTTACTCGTAATTTCAACAGAGGTGGAACAATCTATTCTTGAAGACTTGAGAAGCCGTGTGCAGTTGAGTTCTGTTGCTCTGCCATCATTTAAACTGTTCATCAATATGCCTGGTGGAGCTTTGAAGGTATGGGACATGGCAAAGCTGGGACAACAAGCTGGCAATACTGTTTTGCAGGGTGAAAACGGCTTGTATACTAGTGATCAAATGAGAGGGCATACAAGTGGCAAGTGGTCTTATACATTGTTTCAAGGTCGTTCTGGGCCTGTTCACTCTGCCACTTTCAGTCCCATTGGGGATTTTGTTCTTTTCTCCTCTGCAGACACAACTGTTCGTTTGTGGAGAATAAAACTAAACGCCAGTCTTGTTTGCTACAAAGGTCACAATTACCCAGTATGGGATGTTCAGTGTGTTCAATGGCATGCCAACTGCAATTACATCACAACTGGTTCAAGTGATAGAGCTGTTAGATTGTGGGATGTCGAAAGTGGGGAATGTGTTCGAATTTTCATGGGTCATAGGAGCATGATTCTATCGCTGGCAATGTCACCTGATGGTCAGTTCATGGCATCTGGTGACGAAGACGGTATGATTATGATGTGGGACCTATCACTTGGTCGCTGTGTTACACCTTTGATTGGACACACATCATGCGTTTGGACCCTTTCTTTCAGTTGTGAGGGCTCTCTCCTTGCCCCTGGCTCTGATGATTGCTCAGTGAAATTATGGGACGTAAATTCAAGCTCAAAGGCACCAGGAATAGATGAAAAGAATCTCTTATTTGCAGCTGGGGCTCTTTCCAAAAGTGCATTAACTGCTTGA

Homology

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BLAST of CmoCh01G017080 vs. Swiss-Prot
Match: TAF5_ARATH (Transcription initiation factor TFIID subunit 5 OS=Arabidopsis thaliana GN=TAF5 PE=1 SV=1)

HSP 1 Score: 301.2 bits (770), Expect = 1.2e-80
Identity = 181/378 (47.88%), Postives = 219/378 (57.94%), Query Frame = 1


Query: 2   VEANSASMAPQVKPELALLVISTEVEQSILEDLRSRVQLSSVALPS--FKLFINMPGG-- 61
           +E  + S AP+VKPELAL V+ST+VEQSILEDLR+RVQLSSVA+PS  F  F+N   G  
Sbjct: 297 LETITVSPAPRVKPELALPVMSTDVEQSILEDLRNRVQLSSVAMPSVSFYTFVNTHNGLN 356

Query: 62  ------------------ALKVWDMAKLGQQAGNTVLQGENGLYTSDQ------------ 121
                             ++KVWDMAK+GQ AG+  LQ EN   +SDQ            
Sbjct: 357 CSSISHDGSLVAGGFSDSSIKVWDMAKIGQ-AGSGALQAEND--SSDQSIGPNGRRSYTL 416

Query: 122 MRGHTSGKWSYTL-----------------------------FQGRSGPVHSATFSPIGD 181
           + GH+   +S T                              ++G + PV  A FSP G 
Sbjct: 417 LLGHSGPVYSATFSPPGDFVLSSSADTTIRLWSTKLNANLVCYKGHNYPVWDAQFSPFGH 476

Query: 182 FVLFSSADTTVRLWRIKLNASLVCYKGHNYPVWDVQCVQWHANCNYITTGSSDRAVRLWD 241
           +    S D T R+W +     L    GH   + DV CVQWH NCNYI TGSSD+ VRLWD
Sbjct: 477 YFASCSHDRTARIWSMDRIQPLRIMAGH---LSDVDCVQWHPNCNYIATGSSDKTVRLWD 536

Query: 242 VESGECVRIFMGHRSMILSLAMSPDGQFMASGDEDGMIMMWDLSLGRCVTPLIGHTSCVW 289
           V++GECVRIF+GHRSM+LSLAMSPDG++MASGDEDG IMMWDLS  RC+TPL+GH SCVW
Sbjct: 537 VQTGECVRIFIGHRSMVLSLAMSPDGRYMASGDEDGTIMMWDLSTARCITPLMGHNSCVW 596

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BLAST of CmoCh01G017080 vs. Swiss-Prot
Match: TAF5_MOUSE (Transcription initiation factor TFIID subunit 5 OS=Mus musculus GN=Taf5 PE=1 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 9.1e-36
Identity = 73/162 (45.06%), Postives = 99/162 (61.11%), Query Frame = 1


Query: 101 FQGRSGPVHSATFSPIGDFVLFSSADTTVRLWRIKLNASLVCYKGHNYPVWDVQCVQWHA 160
           ++G + PV    FSP G + +    D   RLW       L  + GH   + DV C ++H 
Sbjct: 582 YKGHNYPVWDTQFSPYGYYFVSGGHDRVARLWATDHYQPLRIFAGH---LADVNCTRYHP 641

Query: 161 NCNYITTGSSDRAVRLWDVESGECVRIFMGHRSMILSLAMSPDGQFMASGDEDGMIMMWD 220
           N NY+ TGS+DR VRLWDV +G CVRIF GH+  I SL  SP+G+F+A+G  DG +++WD
Sbjct: 642 NSNYVATGSADRTVRLWDVLNGNCVRIFTGHKGPIHSLTFSPNGRFLATGATDGRVLLWD 701

Query: 221 LSLGRCVTPLIGHTSCVWTLSFSCEGSLLAPGSDDCSVKLWD 263
           +  G  V  L GHT  V +L FS +G +LA GS D +V+LWD
Sbjct: 702 IGHGLMVGELKGHTDTVCSLRFSRDGEILASGSMDNTVRLWD 740

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BLAST of CmoCh01G017080 vs. Swiss-Prot
Match: TAF5_HUMAN (Transcription initiation factor TFIID subunit 5 OS=Homo sapiens GN=TAF5 PE=1 SV=3)

HSP 1 Score: 151.8 bits (382), Expect = 1.2e-35
Identity = 73/162 (45.06%), Postives = 99/162 (61.11%), Query Frame = 1


Query: 101 FQGRSGPVHSATFSPIGDFVLFSSADTTVRLWRIKLNASLVCYKGHNYPVWDVQCVQWHA 160
           ++G + PV    FSP G + +    D   RLW       L  + GH   + DV C ++H 
Sbjct: 581 YKGHNYPVWDTQFSPYGYYFVSGGHDRVARLWATDHYQPLRIFAGH---LADVNCTRFHP 640

Query: 161 NCNYITTGSSDRAVRLWDVESGECVRIFMGHRSMILSLAMSPDGQFMASGDEDGMIMMWD 220
           N NY+ TGS+DR VRLWDV +G CVRIF GH+  I SL  SP+G+F+A+G  DG +++WD
Sbjct: 641 NSNYVATGSADRTVRLWDVLNGNCVRIFTGHKGPIHSLTFSPNGRFLATGATDGRVLLWD 700

Query: 221 LSLGRCVTPLIGHTSCVWTLSFSCEGSLLAPGSDDCSVKLWD 263
           +  G  V  L GHT  V +L FS +G +LA GS D +V+LWD
Sbjct: 701 IGHGLMVGELKGHTDTVCSLRFSRDGEILASGSMDNTVRLWD 739

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BLAST of CmoCh01G017080 vs. Swiss-Prot
Match: TAF5_SCHPO (Transcription initiation factor TFIID subunit 5 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=taf5 PE=1 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 5.9e-35
Identity = 68/169 (40.24%), Postives = 99/169 (58.58%), Query Frame = 1


Query: 95  KWSYTLFQGRSGPVHSATFSPIGDFVLFSSADTTVRLWRIKLNASLVCYKGHNYPVWDVQ 154
           K +   ++G +GPV    F P G +   +S D T +LW       L  + GH   + DV 
Sbjct: 411 KTALVAYKGHTGPVWDVAFGPFGHYFATASHDQTAQLWSCDHIYPLRVFAGH---LSDVD 470

Query: 155 CVQWHANCNYITTGSSDRAVRLWDVESGECVRIFMGHRSMILSLAMSPDGQFMASGDEDG 214
           CV +H N  Y+ TGSSD+  RLWDV  G  VR+F GH   + ++A++PDG  MAS D +G
Sbjct: 471 CVTFHPNSAYVLTGSSDKTCRLWDVHRGHSVRVFNGHTQPVTAVAIAPDGHTMASADSEG 530

Query: 215 MIMMWDLSLGRCVTPLIGHTSCVWTLSFSCEGSLLAPGSDDCSVKLWDV 264
           +I +WD+  GR +  + GH   +++LSFS E ++L  G  DC+V+ WDV
Sbjct: 531 LIHLWDIGTGRRIKTMRGHRGNIYSLSFSRESTVLVSGGSDCTVRAWDV 576

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BLAST of CmoCh01G017080 vs. Swiss-Prot
Match: TAF5L_MOUSE (TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L OS=Mus musculus GN=Taf5l PE=2 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 2.2e-34
Identity = 70/167 (41.92%), Postives = 99/167 (59.28%), Query Frame = 1


Query: 100 LFQGRSGPVHSATFSPIGDFVLFSSADTTVRLWRIKLNASLVCYKGHNYPVWDVQCVQWH 159
           L+QG + PV     SP   +    S D T RLW       L  Y GH   + DV CV++H
Sbjct: 379 LYQGHAYPVWDVDISPFSLYFASGSHDRTARLWSFDRTYPLRIYAGH---LADVDCVKFH 438

Query: 160 ANCNYITTGSSDRAVRLWDVESGECVRIFMGHRSMILSLAMSPDGQFMASGDEDGMIMMW 219
            N NY+ TGS+D+ VRLW  + G  VR+F GHR  +LSL+ SP+G+++AS  ED  + +W
Sbjct: 439 PNSNYLATGSTDKTVRLWSAQQGNSVRLFTGHRGPVLSLSFSPNGKYLASAGEDQRLKLW 498

Query: 220 DLSLGRCVTPLIGHTSCVWTLSFSCEGSLLAPGSDDCSVKLWDVNSS 267
           DL+ G     L GHT  + +L+FS +  L+A  S D SV++WD+ S+
Sbjct: 499 DLASGTLFKELRGHTDSITSLAFSPDSGLIASASMDNSVRVWDIRST 542

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BLAST of CmoCh01G017080 vs. TrEMBL
Match: A0A0A0L139_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G652030 PE=4 SV=1)

HSP 1 Score: 366.7 bits (940), Expect = 2.6e-98
Identity = 211/382 (55.24%), Postives = 235/382 (61.52%), Query Frame = 1


Query: 3   EANSASMAPQVKPELALLVISTEVEQSILEDLRSRVQLSSVALPS--FKLFINMPGG--- 62
           EANSASMAP+VKPELAL +ISTEVE+SILEDLR+RVQLSSVALPS  F  FIN   G   
Sbjct: 296 EANSASMAPRVKPELALPIISTEVEESILEDLRNRVQLSSVALPSVSFYTFINTHNGLNC 355

Query: 63  -----------------ALKVWDMAKLGQQAGNTVLQGENGLYTSDQMRGHTSGKWSYT- 122
                            +LKVWDMAKLGQQAGNTVLQ EN + TSD + GHTSGK  YT 
Sbjct: 356 SSISYDGALVAGGFSDSSLKVWDMAKLGQQAGNTVLQDENDMSTSDPVTGHTSGKRPYTL 415

Query: 123 -----------------------------------------LFQGRSGPVHSATFSPIGD 182
                                                     ++G + PV    FSP+G 
Sbjct: 416 FQGHSGPVHSATFSPIGDFVLSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFSPVGH 475

Query: 183 FVLFSSADTTVRLWRIKLNASLVCYKGHNYPVWDVQCVQWHANCNYITTGSSDRAVRLWD 242
           +    S D T R+W +     L    GH   + DV CVQWHANCNYI TGSSD+ VRLWD
Sbjct: 476 YFASCSHDRTARIWSMDRIQPLRIMAGH---LSDVDCVQWHANCNYIATGSSDKTVRLWD 535

Query: 243 VESGECVRIFMGHRSMILSLAMSPDGQFMASGDEDGMIMMWDLSLGRCVTPLIGHTSCVW 292
           V+SGECVRIF+GHRSMILSLAMSPDG+FMASGDEDG IMMWDLS GRCVTPLIGHTSCVW
Sbjct: 536 VQSGECVRIFIGHRSMILSLAMSPDGRFMASGDEDGTIMMWDLSTGRCVTPLIGHTSCVW 595

[Close]

BLAST of CmoCh01G017080 vs. TrEMBL
Match: A0A061GQE0_THECC (TBP-associated factor 5 isoform 1 OS=Theobroma cacao GN=TCM_036918 PE=4 SV=1)

HSP 1 Score: 333.6 bits (854), Expect = 2.5e-88
Identity = 191/377 (50.66%), Postives = 226/377 (59.95%), Query Frame = 1


Query: 3   EANSASMAPQVKPELALLVISTEVEQSILEDLRSRVQLSSVALPS--FKLFINMPGG--- 62
           EAN+ S AP+VKPEL L V+ TEVEQSILEDLR+RVQLSSVALPS  F  F+N   G   
Sbjct: 327 EANTTSTAPRVKPELPLPVMPTEVEQSILEDLRNRVQLSSVALPSVSFYTFLNTHNGLNC 386

Query: 63  -----------------ALKVWDMAKLGQQAGNTVLQGENGLYTSDQMRGHTSGKWSYTL 122
                            +LK+WDMAKLGQQAG+++LQGEN   +S  + G    K SYTL
Sbjct: 387 SSISHDGSLVAGGFSDSSLKIWDMAKLGQQAGSSILQGENDSTSSKHVVGPNGVKRSYTL 446

Query: 123 ------------------------------------------FQGRSGPVHSATFSPIGD 182
                                                     ++G + PV    FSP+G 
Sbjct: 447 LQGHSGPVYSANFSPLGDFILSSSADTTIRLWSTELNANLVCYKGHNYPVWDVQFSPVGH 506

Query: 183 FVLFSSADTTVRLWRIKLNASLVCYKGHNYPVWDVQCVQWHANCNYITTGSSDRAVRLWD 242
           +   +S D T R+W +     +    GH   + DV CVQWHANCNYI TGSSD+ VRLWD
Sbjct: 507 YFASASHDRTARIWSMDKIQPMRIMAGH---LSDVDCVQWHANCNYIATGSSDKTVRLWD 566

Query: 243 VESGECVRIFMGHRSMILSLAMSPDGQFMASGDEDGMIMMWDLSLGRCVTPLIGHTSCVW 288
           V+SGECVRIF+GHRSMILSLAMSPDG++MASGDEDG IMMWDLS GRCVTPL+GH+SCVW
Sbjct: 567 VQSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLSSGRCVTPLMGHSSCVW 626

[Close]

BLAST of CmoCh01G017080 vs. TrEMBL
Match: A0A061GHL7_THECC (TBP-associated factor 5 isoform 2 OS=Theobroma cacao GN=TCM_036918 PE=4 SV=1)

HSP 1 Score: 333.6 bits (854), Expect = 2.5e-88
Identity = 191/377 (50.66%), Postives = 226/377 (59.95%), Query Frame = 1


Query: 3   EANSASMAPQVKPELALLVISTEVEQSILEDLRSRVQLSSVALPS--FKLFINMPGG--- 62
           EAN+ S AP+VKPEL L V+ TEVEQSILEDLR+RVQLSSVALPS  F  F+N   G   
Sbjct: 197 EANTTSTAPRVKPELPLPVMPTEVEQSILEDLRNRVQLSSVALPSVSFYTFLNTHNGLNC 256

Query: 63  -----------------ALKVWDMAKLGQQAGNTVLQGENGLYTSDQMRGHTSGKWSYTL 122
                            +LK+WDMAKLGQQAG+++LQGEN   +S  + G    K SYTL
Sbjct: 257 SSISHDGSLVAGGFSDSSLKIWDMAKLGQQAGSSILQGENDSTSSKHVVGPNGVKRSYTL 316

Query: 123 ------------------------------------------FQGRSGPVHSATFSPIGD 182
                                                     ++G + PV    FSP+G 
Sbjct: 317 LQGHSGPVYSANFSPLGDFILSSSADTTIRLWSTELNANLVCYKGHNYPVWDVQFSPVGH 376

Query: 183 FVLFSSADTTVRLWRIKLNASLVCYKGHNYPVWDVQCVQWHANCNYITTGSSDRAVRLWD 242
           +   +S D T R+W +     +    GH   + DV CVQWHANCNYI TGSSD+ VRLWD
Sbjct: 377 YFASASHDRTARIWSMDKIQPMRIMAGH---LSDVDCVQWHANCNYIATGSSDKTVRLWD 436

Query: 243 VESGECVRIFMGHRSMILSLAMSPDGQFMASGDEDGMIMMWDLSLGRCVTPLIGHTSCVW 288
           V+SGECVRIF+GHRSMILSLAMSPDG++MASGDEDG IMMWDLS GRCVTPL+GH+SCVW
Sbjct: 437 VQSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLSSGRCVTPLMGHSSCVW 496

[Close]

BLAST of CmoCh01G017080 vs. TrEMBL
Match: B9IL46_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0018s02430g PE=4 SV=2)

HSP 1 Score: 332.4 bits (851), Expect = 5.5e-88
Identity = 190/378 (50.26%), Postives = 224/378 (59.26%), Query Frame = 1


Query: 3   EANSASMAPQVKPELALLVISTEVEQSILEDLRSRVQLSSVALPS--FKLFINMPGG--- 62
           EAN+ S AP+VKPEL L V+ TEVEQSILEDLR+RVQLSSV LPS  F  FIN   G   
Sbjct: 300 EANTVSAAPRVKPELPLPVMPTEVEQSILEDLRNRVQLSSVTLPSVSFYTFINTHNGLNC 359

Query: 63  -----------------ALKVWDMAKLGQQAGNTVLQGENGLYTSDQMRGHTSGKWSYT- 122
                            +LKVWDMAKLG QAGN++LQGEN    S+Q +   SGK SYT 
Sbjct: 360 SSISHDGSLIAGGFSDSSLKVWDMAKLGHQAGNSILQGENDTAPSEQGQSPNSGKRSYTL 419

Query: 123 -----------------------------------------LFQGRSGPVHSATFSPIGD 182
                                                     ++G + PV    FSP+G 
Sbjct: 420 FQGHSGPVHSATFSPLGDFILSSSADTTVRLWSTKLNANLVCYKGHNYPVWDVQFSPVGQ 479

Query: 183 FVLFSSADTTVRLWRIKLNASLVCYKGHNYPVWDVQCVQWHANCNYITTGSSDRAVRLWD 242
           +   +S D T R+W +     L    GH   + DV C+QWHANCNYI TGSSD+ VRLWD
Sbjct: 480 YFASASHDRTARIWSMDRIQPLRIMAGH---LSDVDCLQWHANCNYIATGSSDKTVRLWD 539

Query: 243 VESGECVRIFMGHRSMILSLAMSPDGQFMASGDEDGMIMMWDLSLGRCVTPLIGHTSCVW 288
           V+SGECVRIF+GHRSMILSLAMSPDG++MAS DEDG IMMWDLS GRC++PLIGH SCVW
Sbjct: 540 VQSGECVRIFIGHRSMILSLAMSPDGRYMASADEDGTIMMWDLSSGRCISPLIGHNSCVW 599

[Close]

BLAST of CmoCh01G017080 vs. TrEMBL
Match: A0A061GIH8_THECC (TBP-associated factor 5 isoform 3 OS=Theobroma cacao GN=TCM_036918 PE=4 SV=1)

HSP 1 Score: 328.9 bits (842), Expect = 6.1e-87
Identity = 180/337 (53.41%), Postives = 214/337 (63.50%), Query Frame = 1


Query: 3   EANSASMAPQVKPELALLVISTEVEQSILEDLRSRVQLSSVALPS--FKLFINMPGG--- 62
           EAN+ S AP+VKPEL L V+ TEVEQSILEDLR+RVQLSSVALPS  F  F+N   G   
Sbjct: 197 EANTTSTAPRVKPELPLPVMPTEVEQSILEDLRNRVQLSSVALPSVSFYTFLNTHNGLNC 256

Query: 63  -----------------ALKVWDMAKLGQQAGNTVLQGENGLYTSDQMRGHTSGKWSYTL 122
                            +LK+WDMAKLGQQAG+++LQGEN   +S  + G    K SYTL
Sbjct: 257 SSISHDGSLVAGGFSDSSLKIWDMAKLGQQAGSSILQGENDSTSSKHVVGPNGVKRSYTL 316

Query: 123 ------------------------------------------FQGRSGPVHSATFSPIGD 182
                                                     ++G + PV    FSP+G 
Sbjct: 317 LQGHSGPVYSANFSPLGDFILSSSADTTIRLWSTELNANLVCYKGHNYPVWDVQFSPVGH 376

Query: 183 FVLFSSADTTVRLWRIKLNASLVCYKGHNYPVWDVQCVQWHANCNYITTGSSDRAVRLWD 242
           +   +S D T R+W +     +    GH   + DV CVQWHANCNYI TGSSD+ VRLWD
Sbjct: 377 YFASASHDRTARIWSMDKIQPMRIMAGH---LSDVDCVQWHANCNYIATGSSDKTVRLWD 436

Query: 243 VESGECVRIFMGHRSMILSLAMSPDGQFMASGDEDGMIMMWDLSLGRCVTPLIGHTSCVW 276
           V+SGECVRIF+GHRSMILSLAMSPDG++MASGDEDG IMMWDLS GRCVTPL+GH+SCVW
Sbjct: 437 VQSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLSSGRCVTPLMGHSSCVW 496

[Close]

BLAST of CmoCh01G017080 vs. TAIR10
Match: AT5G25150.1 (AT5G25150.1 TBP-associated factor 5)

HSP 1 Score: 301.2 bits (770), Expect = 6.8e-82
Identity = 181/378 (47.88%), Postives = 219/378 (57.94%), Query Frame = 1


Query: 2   VEANSASMAPQVKPELALLVISTEVEQSILEDLRSRVQLSSVALPS--FKLFINMPGG-- 61
           +E  + S AP+VKPELAL V+ST+VEQSILEDLR+RVQLSSVA+PS  F  F+N   G  
Sbjct: 297 LETITVSPAPRVKPELALPVMSTDVEQSILEDLRNRVQLSSVAMPSVSFYTFVNTHNGLN 356

Query: 62  ------------------ALKVWDMAKLGQQAGNTVLQGENGLYTSDQ------------ 121
                             ++KVWDMAK+GQ AG+  LQ EN   +SDQ            
Sbjct: 357 CSSISHDGSLVAGGFSDSSIKVWDMAKIGQ-AGSGALQAEND--SSDQSIGPNGRRSYTL 416

Query: 122 MRGHTSGKWSYTL-----------------------------FQGRSGPVHSATFSPIGD 181
           + GH+   +S T                              ++G + PV  A FSP G 
Sbjct: 417 LLGHSGPVYSATFSPPGDFVLSSSADTTIRLWSTKLNANLVCYKGHNYPVWDAQFSPFGH 476

Query: 182 FVLFSSADTTVRLWRIKLNASLVCYKGHNYPVWDVQCVQWHANCNYITTGSSDRAVRLWD 241
           +    S D T R+W +     L    GH   + DV CVQWH NCNYI TGSSD+ VRLWD
Sbjct: 477 YFASCSHDRTARIWSMDRIQPLRIMAGH---LSDVDCVQWHPNCNYIATGSSDKTVRLWD 536

Query: 242 VESGECVRIFMGHRSMILSLAMSPDGQFMASGDEDGMIMMWDLSLGRCVTPLIGHTSCVW 289
           V++GECVRIF+GHRSM+LSLAMSPDG++MASGDEDG IMMWDLS  RC+TPL+GH SCVW
Sbjct: 537 VQTGECVRIFIGHRSMVLSLAMSPDGRYMASGDEDGTIMMWDLSTARCITPLMGHNSCVW 596

[Close]

BLAST of CmoCh01G017080 vs. TAIR10
Match: AT3G49660.1 (AT3G49660.1 Transducin/WD40 repeat-like superfamily protein)

HSP 1 Score: 99.8 bits (247), Expect = 3.0e-21
Identity = 50/168 (29.76%), Postives = 86/168 (51.19%), Query Frame = 1


Query: 101 FQGRSGPVHSATFSPIGDFVLFSSADTTVRLWRIKLNASLVCYKGH-NYPVWDVQCVQWH 160
           F G    +    FS    F++ +S D T++LW ++  + +    GH NY      CV ++
Sbjct: 67  FTGHENGISDVAFSSDARFIVSASDDKTLKLWDVETGSLIKTLIGHTNYAF----CVNFN 126

Query: 161 ANCNYITTGSSDRAVRLWDVESGECVRIFMGHRSMILSLAMSPDGQFMASGDEDGMIMMW 220
              N I +GS D  VR+WDV +G+C+++   H   + ++  + DG  + S   DG+  +W
Sbjct: 127 PQSNMIVSGSFDETVRIWDVTTGKCLKVLPAHSDPVTAVDFNRDGSLIVSSSYDGLCRIW 186

Query: 221 DLSLGRCVTPLI-GHTSCVWTLSFSCEGSLLAPGSDDCSVKLWDVNSS 267
           D   G CV  LI      V  + FS  G  +  G+ D +++LW+++S+
Sbjct: 187 DSGTGHCVKTLIDDENPPVSFVRFSPNGKFILVGTLDNTLRLWNISSA 230

[Close]

BLAST of CmoCh01G017080 vs. TAIR10
Match: AT1G11160.1 (AT1G11160.1 Transducin/WD40 repeat-like superfamily protein)

HSP 1 Score: 98.6 bits (244), Expect = 6.7e-21
Identity = 54/199 (27.14%), Postives = 99/199 (49.75%), Query Frame = 1


Query: 67  LGQQAGNTVLQGENGLYTSDQMRGHTSGKWSYTLFQGRSGPVHSATFSPIGDFVLFSSAD 126
           +G++    +L G +    +    G T+   S     G + PV S  F+     VL  ++ 
Sbjct: 23  IGKKTSRLLLTGGDDYKVNLWSIGKTTSPMSLC---GHTSPVDSVAFNSEEVLVLAGASS 82

Query: 127 TTVRLWRIKLNASLVCYKGHNYPVWDVQCVQWHANCNYITTGSSDRAVRLWDVESGECVR 186
             ++LW ++ +  +  + GH     +   V++H    ++ +GSSD  +R+WD     C++
Sbjct: 83  GVIKLWDLEESKMVRAFTGHRS---NCSAVEFHPFGEFLASGSSDTNLRVWDTRKKGCIQ 142

Query: 187 IFMGHRSMILSLAMSPDGQFMASGDEDGMIMMWDLSLGRCVTPLIGHTSCVWTLSFSCEG 246
            + GH   I ++  SPDG+++ SG  D ++ +WDL+ G+ +     H   + +L F    
Sbjct: 143 TYKGHTRGISTIEFSPDGRWVVSGGLDNVVKVWDLTAGKLLHEFKCHEGPIRSLDFHPLE 202

Query: 247 SLLAPGSDDCSVKLWDVNS 266
            LLA GS D +VK WD+ +
Sbjct: 203 FLLATGSADRTVKFWDLET 215

[Close]

BLAST of CmoCh01G017080 vs. TAIR10
Match: AT5G23430.1 (AT5G23430.1 Transducin/WD40 repeat-like superfamily protein)

HSP 1 Score: 96.3 bits (238), Expect = 3.3e-20
Identity = 48/163 (29.45%), Postives = 81/163 (49.69%), Query Frame = 1


Query: 103 GRSGPVHSATFSPIGDFVLFSSADTTVRLWRIKLNASLVCYKGHNYPVWDVQCVQWHANC 162
           G S  + S TF      V   +A  T++LW ++    +    GH     +   V +H   
Sbjct: 57  GHSSGIDSVTFDASEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRS---NCISVDFHPFG 116

Query: 163 NYITTGSSDRAVRLWDVESGECVRIFMGHRSMILSLAMSPDGQFMASGDEDGMIMMWDLS 222
            +  +GS D  +++WD+    C+  + GH   +  L  +PDG+++ SG ED ++ +WDL+
Sbjct: 117 EFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNVLRFTPDGRWVVSGGEDNIVKVWDLT 176

Query: 223 LGRCVTPLIGHTSCVWTLSFSCEGSLLAPGSDDCSVKLWDVNS 266
            G+ +T    H   + +L F     LLA GS D +VK WD+ +
Sbjct: 177 AGKLLTEFKSHEGQIQSLDFHPHEFLLATGSADRTVKFWDLET 216

[Close]

BLAST of CmoCh01G017080 vs. TAIR10
Match: AT5G08390.1 (AT5G08390.1 Transducin/WD40 repeat-like superfamily protein)

HSP 1 Score: 94.7 bits (234), Expect = 9.7e-20
Identity = 47/163 (28.83%), Postives = 80/163 (49.08%), Query Frame = 1


Query: 103 GRSGPVHSATFSPIGDFVLFSSADTTVRLWRIKLNASLVCYKGHNYPVWDVQCVQWHANC 162
           G S  + S TF      V   +A  T++LW ++    +    GH     +   V +H   
Sbjct: 57  GHSSGIDSVTFDASEGLVAAGAASGTIKLWDLEEAKVVRTLTGHRS---NCVSVNFHPFG 116

Query: 163 NYITTGSSDRAVRLWDVESGECVRIFMGHRSMILSLAMSPDGQFMASGDEDGMIMMWDLS 222
            +  +GS D  +++WD+    C+  + GH   +  L  +PDG+++ SG ED ++ +WDL+
Sbjct: 117 EFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNVLRFTPDGRWIVSGGEDNVVKVWDLT 176

Query: 223 LGRCVTPLIGHTSCVWTLSFSCEGSLLAPGSDDCSVKLWDVNS 266
            G+ +     H   + +L F     LLA GS D +VK WD+ +
Sbjct: 177 AGKLLHEFKSHEGKIQSLDFHPHEFLLATGSADKTVKFWDLET 216

[Close]

BLAST of CmoCh01G017080 vs. NCBI nr
Match: gi|657945260|ref|XP_008378948.1| (PREDICTED: transcription initiation factor TFIID subunit 5-like isoform X3 [Malus domestica])

HSP 1 Score: 375.6 bits (963), Expect = 8.1e-101
Identity = 201/337 (59.64%), Postives = 227/337 (67.36%), Query Frame = 1


Query: 3   EANSASMAPQVKPELALLVISTEVEQSILEDLRSRVQLSSVALPS--FKLFINMPGG--- 62
           EA   +  P+VKPEL L VIS EVEQSILEDLR+RVQLS+ ALPS  F  FIN   G   
Sbjct: 300 EATPVTAVPRVKPELTLPVISAEVEQSILEDLRNRVQLSNAALPSVSFYTFINTHNGLNC 359

Query: 63  -----------------ALKVWDMAKLGQQAGNTVLQGENGLYTSDQMRGHTSGKWSYTL 122
                            +LKVWDMAK+GQQ G   LQ ENG  TS +      GK  YTL
Sbjct: 360 SSISHDGSMVAGGFSDSSLKVWDMAKIGQQ-GLDSLQVENGTTTSSEQVLSNGGKKPYTL 419

Query: 123 FQGRSGPVHSATFSPIGDFVLFSSADTTVRLWRIKLNASLVCYKGHNYPVWDVQ------ 182
           FQG SGPV+SATF+P+GDF+L SSAD+TVRLW  KLNA+LVCYKGHNYPVWDVQ      
Sbjct: 420 FQGHSGPVYSATFNPLGDFILSSSADSTVRLWSTKLNANLVCYKGHNYPVWDVQFSPVGP 479

Query: 183 ----------------------CVQWHANCNYITTGSSDRAVRLWDVESGECVRIFMGHR 242
                                 CVQWH NCNYI TGSSD+ VRLWDV++GECVRIF+GHR
Sbjct: 480 YFASASHDRTARIWSMDRIQPLCVQWHVNCNYIATGSSDKTVRLWDVQTGECVRIFIGHR 539

Query: 243 SMILSLAMSPDGQFMASGDEDGMIMMWDLSLGRCVTPLIGHTSCVWTLSFSCEGSLLAPG 290
           SM+LSLAMSPDG++ ASGDEDG +MMWDLS GRCVTPL GHTSCVWTL FS EGSLLA G
Sbjct: 540 SMVLSLAMSPDGRYTASGDEDGAMMMWDLSSGRCVTPLTGHTSCVWTLDFSGEGSLLASG 599

[Close]

BLAST of CmoCh01G017080 vs. NCBI nr
Match: gi|659104236|ref|XP_008452860.1| (PREDICTED: transcription initiation factor TFIID subunit 5 [Cucumis melo])

HSP 1 Score: 369.0 bits (946), Expect = 7.6e-99
Identity = 213/382 (55.76%), Postives = 235/382 (61.52%), Query Frame = 1


Query: 3   EANSASMAPQVKPELALLVISTEVEQSILEDLRSRVQLSSVALPS--FKLFINMPGG--- 62
           EANSASMAP+VKPELAL +ISTEVEQSILEDLR+RVQLSSVALPS  F  FIN   G   
Sbjct: 296 EANSASMAPRVKPELALPIISTEVEQSILEDLRNRVQLSSVALPSVSFYTFINTHNGLNC 355

Query: 63  -----------------ALKVWDMAKLGQQAGNTVLQGENGLYTSDQMRGHTSGKWSYT- 122
                            +LKVWDMAKLGQQAGNTVLQ EN + TSD + GHTSGK  YT 
Sbjct: 356 SSISYDGALVAGGFSDSSLKVWDMAKLGQQAGNTVLQDENDMSTSDPVTGHTSGKRPYTL 415

Query: 123 -----------------------------------------LFQGRSGPVHSATFSPIGD 182
                                                     ++G + PV    FSP+G 
Sbjct: 416 FQGHSGPVHSATFSPIGDFVLSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFSPVGH 475

Query: 183 FVLFSSADTTVRLWRIKLNASLVCYKGHNYPVWDVQCVQWHANCNYITTGSSDRAVRLWD 242
           +    S D T R+W +     L    GH   + DV CVQWHANCNYI TGSSD+ VRLWD
Sbjct: 476 YFASCSHDRTARIWSMDRIQPLRIMAGH---LSDVDCVQWHANCNYIATGSSDKTVRLWD 535

Query: 243 VESGECVRIFMGHRSMILSLAMSPDGQFMASGDEDGMIMMWDLSLGRCVTPLIGHTSCVW 292
           V+SGECVRIF+GHRSMILSLAMSPDG+FMASGDEDG IMMWDLS GRCVTPLIGHTSCVW
Sbjct: 536 VQSGECVRIFIGHRSMILSLAMSPDGRFMASGDEDGTIMMWDLSTGRCVTPLIGHTSCVW 595

[Close]

BLAST of CmoCh01G017080 vs. NCBI nr
Match: gi|449455529|ref|XP_004145505.1| (PREDICTED: transcription initiation factor TFIID subunit 5 [Cucumis sativus])

HSP 1 Score: 366.7 bits (940), Expect = 3.8e-98
Identity = 211/382 (55.24%), Postives = 235/382 (61.52%), Query Frame = 1


Query: 3   EANSASMAPQVKPELALLVISTEVEQSILEDLRSRVQLSSVALPS--FKLFINMPGG--- 62
           EANSASMAP+VKPELAL +ISTEVE+SILEDLR+RVQLSSVALPS  F  FIN   G   
Sbjct: 296 EANSASMAPRVKPELALPIISTEVEESILEDLRNRVQLSSVALPSVSFYTFINTHNGLNC 355

Query: 63  -----------------ALKVWDMAKLGQQAGNTVLQGENGLYTSDQMRGHTSGKWSYT- 122
                            +LKVWDMAKLGQQAGNTVLQ EN + TSD + GHTSGK  YT 
Sbjct: 356 SSISYDGALVAGGFSDSSLKVWDMAKLGQQAGNTVLQDENDMSTSDPVTGHTSGKRPYTL 415

Query: 123 -----------------------------------------LFQGRSGPVHSATFSPIGD 182
                                                     ++G + PV    FSP+G 
Sbjct: 416 FQGHSGPVHSATFSPIGDFVLSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFSPVGH 475

Query: 183 FVLFSSADTTVRLWRIKLNASLVCYKGHNYPVWDVQCVQWHANCNYITTGSSDRAVRLWD 242
           +    S D T R+W +     L    GH   + DV CVQWHANCNYI TGSSD+ VRLWD
Sbjct: 476 YFASCSHDRTARIWSMDRIQPLRIMAGH---LSDVDCVQWHANCNYIATGSSDKTVRLWD 535

Query: 243 VESGECVRIFMGHRSMILSLAMSPDGQFMASGDEDGMIMMWDLSLGRCVTPLIGHTSCVW 292
           V+SGECVRIF+GHRSMILSLAMSPDG+FMASGDEDG IMMWDLS GRCVTPLIGHTSCVW
Sbjct: 536 VQSGECVRIFIGHRSMILSLAMSPDGRFMASGDEDGTIMMWDLSTGRCVTPLIGHTSCVW 595

[Close]

BLAST of CmoCh01G017080 vs. NCBI nr
Match: gi|590571939|ref|XP_007011731.1| (TBP-associated factor 5 isoform 2 [Theobroma cacao])

HSP 1 Score: 333.6 bits (854), Expect = 3.5e-88
Identity = 191/377 (50.66%), Postives = 226/377 (59.95%), Query Frame = 1


Query: 3   EANSASMAPQVKPELALLVISTEVEQSILEDLRSRVQLSSVALPS--FKLFINMPGG--- 62
           EAN+ S AP+VKPEL L V+ TEVEQSILEDLR+RVQLSSVALPS  F  F+N   G   
Sbjct: 197 EANTTSTAPRVKPELPLPVMPTEVEQSILEDLRNRVQLSSVALPSVSFYTFLNTHNGLNC 256

Query: 63  -----------------ALKVWDMAKLGQQAGNTVLQGENGLYTSDQMRGHTSGKWSYTL 122
                            +LK+WDMAKLGQQAG+++LQGEN   +S  + G    K SYTL
Sbjct: 257 SSISHDGSLVAGGFSDSSLKIWDMAKLGQQAGSSILQGENDSTSSKHVVGPNGVKRSYTL 316

Query: 123 ------------------------------------------FQGRSGPVHSATFSPIGD 182
                                                     ++G + PV    FSP+G 
Sbjct: 317 LQGHSGPVYSANFSPLGDFILSSSADTTIRLWSTELNANLVCYKGHNYPVWDVQFSPVGH 376

Query: 183 FVLFSSADTTVRLWRIKLNASLVCYKGHNYPVWDVQCVQWHANCNYITTGSSDRAVRLWD 242
           +   +S D T R+W +     +    GH   + DV CVQWHANCNYI TGSSD+ VRLWD
Sbjct: 377 YFASASHDRTARIWSMDKIQPMRIMAGH---LSDVDCVQWHANCNYIATGSSDKTVRLWD 436

Query: 243 VESGECVRIFMGHRSMILSLAMSPDGQFMASGDEDGMIMMWDLSLGRCVTPLIGHTSCVW 288
           V+SGECVRIF+GHRSMILSLAMSPDG++MASGDEDG IMMWDLS GRCVTPL+GH+SCVW
Sbjct: 437 VQSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLSSGRCVTPLMGHSSCVW 496

[Close]

BLAST of CmoCh01G017080 vs. NCBI nr
Match: gi|590571936|ref|XP_007011730.1| (TBP-associated factor 5 isoform 1 [Theobroma cacao])

HSP 1 Score: 333.6 bits (854), Expect = 3.5e-88
Identity = 191/377 (50.66%), Postives = 226/377 (59.95%), Query Frame = 1


Query: 3   EANSASMAPQVKPELALLVISTEVEQSILEDLRSRVQLSSVALPS--FKLFINMPGG--- 62
           EAN+ S AP+VKPEL L V+ TEVEQSILEDLR+RVQLSSVALPS  F  F+N   G   
Sbjct: 327 EANTTSTAPRVKPELPLPVMPTEVEQSILEDLRNRVQLSSVALPSVSFYTFLNTHNGLNC 386

Query: 63  -----------------ALKVWDMAKLGQQAGNTVLQGENGLYTSDQMRGHTSGKWSYTL 122
                            +LK+WDMAKLGQQAG+++LQGEN   +S  + G    K SYTL
Sbjct: 387 SSISHDGSLVAGGFSDSSLKIWDMAKLGQQAGSSILQGENDSTSSKHVVGPNGVKRSYTL 446

Query: 123 ------------------------------------------FQGRSGPVHSATFSPIGD 182
                                                     ++G + PV    FSP+G 
Sbjct: 447 LQGHSGPVYSANFSPLGDFILSSSADTTIRLWSTELNANLVCYKGHNYPVWDVQFSPVGH 506

Query: 183 FVLFSSADTTVRLWRIKLNASLVCYKGHNYPVWDVQCVQWHANCNYITTGSSDRAVRLWD 242
           +   +S D T R+W +     +    GH   + DV CVQWHANCNYI TGSSD+ VRLWD
Sbjct: 507 YFASASHDRTARIWSMDKIQPMRIMAGH---LSDVDCVQWHANCNYIATGSSDKTVRLWD 566

Query: 243 VESGECVRIFMGHRSMILSLAMSPDGQFMASGDEDGMIMMWDLSLGRCVTPLIGHTSCVW 288
           V+SGECVRIF+GHRSMILSLAMSPDG++MASGDEDG IMMWDLS GRCVTPL+GH+SCVW
Sbjct: 567 VQSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLSSGRCVTPLMGHSSCVW 626

The following BLAST results are available for this feature:

BLAST of CmoCh01G017080 vs. Swiss-Prot


Match Name	E-value	Identity	Description
TAF5_ARATH	1.2e-80	47.88	Transcription initiation factor TFIID subunit 5 OS=Arabidopsis thaliana GN=TAF5 ...	[more]
TAF5_MOUSE	9.1e-36	45.06	Transcription initiation factor TFIID subunit 5 OS=Mus musculus GN=Taf5 PE=1 SV=...	[more]
TAF5_HUMAN	1.2e-35	45.06	Transcription initiation factor TFIID subunit 5 OS=Homo sapiens GN=TAF5 PE=1 SV=...	[more]
TAF5_SCHPO	5.9e-35	40.24	Transcription initiation factor TFIID subunit 5 OS=Schizosaccharomyces pombe (st...	[more]
TAF5L_MOUSE	2.2e-34	41.92	TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa ...	[more]

BLAST of CmoCh01G017080 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L139_CUCSA	2.6e-98	55.24	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G652030 PE=4 SV=1	[more]
A0A061GQE0_THECC	2.5e-88	50.66	TBP-associated factor 5 isoform 1 OS=Theobroma cacao GN=TCM_036918 PE=4 SV=1	[more]
A0A061GHL7_THECC	2.5e-88	50.66	TBP-associated factor 5 isoform 2 OS=Theobroma cacao GN=TCM_036918 PE=4 SV=1	[more]
B9IL46_POPTR	5.5e-88	50.26	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0018s02430g PE=4 SV=2	[more]
A0A061GIH8_THECC	6.1e-87	53.41	TBP-associated factor 5 isoform 3 OS=Theobroma cacao GN=TCM_036918 PE=4 SV=1	[more]

BLAST of CmoCh01G017080 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G25150.1	6.8e-82	47.88	TBP-associated factor 5	[more]
AT3G49660.1	3.0e-21	29.76	Transducin/WD40 repeat-like superfamily protein	[more]
AT1G11160.1	6.7e-21	27.14	Transducin/WD40 repeat-like superfamily protein	[more]
AT5G23430.1	3.3e-20	29.45	Transducin/WD40 repeat-like superfamily protein	[more]
AT5G08390.1	9.7e-20	28.83	Transducin/WD40 repeat-like superfamily protein	[more]

BLAST of CmoCh01G017080 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|657945260\|ref\|XP_008378948.1\|	8.1e-101	59.64	PREDICTED: transcription initiation factor TFIID subunit 5-like isoform X3 [Malu...	[more]
gi\|659104236\|ref\|XP_008452860.1\|	7.6e-99	55.76	PREDICTED: transcription initiation factor TFIID subunit 5 [Cucumis melo]	[more]
gi\|449455529\|ref\|XP_004145505.1\|	3.8e-98	55.24	PREDICTED: transcription initiation factor TFIID subunit 5 [Cucumis sativus]	[more]
gi\|590571939\|ref\|XP_007011731.1\|	3.5e-88	50.66	TBP-associated factor 5 isoform 2 [Theobroma cacao]	[more]
gi\|590571936\|ref\|XP_007011730.1\|	3.5e-88	50.66	TBP-associated factor 5 isoform 1 [Theobroma cacao]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001680	WD40_repeat
IPR015943	WD40/YVTN_repeat-like_dom_sf
IPR017986	WD40_repeat_dom
IPR019775	WD40_repeat_CS
IPR020472	G-protein_beta_WD-40_rep

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0034645	cellular macromolecule biosynthetic process
biological_process	GO:0033044	regulation of chromosome organization
biological_process	GO:0008150	biological_process
biological_process	GO:0006413	translational initiation
biological_process	GO:0006366	transcription from RNA polymerase II promoter
biological_process	GO:0007062	sister chromatid cohesion
biological_process	GO:0000394	RNA splicing, via endonucleolytic cleavage and ligation
biological_process	GO:0006446	regulation of translational initiation
biological_process	GO:0044271	cellular nitrogen compound biosynthetic process
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0007131	reciprocal meiotic recombination
biological_process	GO:0042138	meiotic DNA double-strand break formation
biological_process	GO:0045132	meiotic chromosome segregation
biological_process	GO:0016070	RNA metabolic process
biological_process	GO:0007126	meiotic nuclear division
biological_process	GO:0010467	gene expression
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005669	transcription factor TFIID complex
molecular_function	GO:0005515	protein binding
molecular_function	GO:0016740	transferase activity
molecular_function	GO:0003743	translation initiation factor activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh01G017080.1	CmoCh01G017080.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001680	WD40 repeat	PFAM	PF00400	WD40	coord: 182..220 score: 3.8E-8coord: 224..262 score: 2.9E-6coord: 142..178 score: 1.4E-6coord: 100..132 score: 0
IPR001680	WD40 repeat	SMART	SM00320	WD40_4	coord: 181..220 score: 2.8E-10coord: 93..133 score: 0.015coord: 223..262 score: 6.5E-6coord: 136..178 score: 1.
IPR001680	WD40 repeat	PROFILE	PS50082	WD_REPEATS_2	coord: 101..135 score: 11.377coord: 230..271 score: 13.717coord: 188..229 score: 15.521coord: 153..187 score: 12
IPR015943	WD40/YVTN repeat-like-containing domain	GENE3D	G3DSA:2.130.10.10		coord: 57..266 score: 2.5
IPR017986	WD40-repeat-containing domain	PROFILE	PS50294	WD_REPEATS_REGION	coord: 101..271 score: 39
IPR017986	WD40-repeat-containing domain	unknown	SSF50978	WD40 repeat-like	coord: 94..266 score: 9.77E-49coord: 58..66 score: 9.77
IPR019775	WD40 repeat, conserved site	PROSITE	PS00678	WD_REPEATS_1	coord: 207..221 score: -coord: 165..179 scor
IPR020472	G-protein beta WD-40 repeat	PRINTS	PR00320	GPROTEINBRPT	coord: 207..221 score: 4.1E-7coord: 165..179 score: 4.1E-7coord: 249..263 score: 4.
None	No IPR available	PANTHER	PTHR19879	TRANSCRIPTION INITIATION FACTOR TFIID	coord: 1..270 score: 3.3
None	No IPR available	PANTHER	PTHR19879:SF1	CANNONBALL-RELATED	coord: 1..270 score: 3.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh01G017080	Cucsa.271590	Cucumber (Gy14) v1	cgycmoB0748
CmoCh01G017080	CmaCh09G004150	Cucurbita maxima (Rimu)	cmacmoB050
CmoCh01G017080	CmaCh01G016590	Cucurbita maxima (Rimu)	cmacmoB468
CmoCh01G017080	Cla021019	Watermelon (97103) v1	cmowmB435
CmoCh01G017080	Csa4G652030	Cucumber (Chinese Long) v2	cmocuB463
CmoCh01G017080	MELO3C016968	Melon (DHL92) v3.5.1	cmomeB424
CmoCh01G017080	ClCG05G016370	Watermelon (Charleston Gray)	cmowcgB413
CmoCh01G017080	CSPI04G26300	Wild cucumber (PI 183967)	cmocpiB467
CmoCh01G017080	Lsi04G020770	Bottle gourd (USVL1VR-Ls)	cmolsiB425
CmoCh01G017080	Cp4.1LG06g02920	Cucurbita pepo (Zucchini)	cmocpeB467
CmoCh01G017080	MELO3C016968.2	Melon (DHL92) v3.6.1	cmomedB488
CmoCh01G017080	CsaV3_4G036640	Cucumber (Chinese Long) v3	cmocucB0553
CmoCh01G017080	Cla97C05G097350	Watermelon (97103) v2	cmowmbB462
CmoCh01G017080	Bhi09G002472	Wax gourd	cmowgoB0601
CmoCh01G017080	CsGy4G024650	Cucumber (Gy14) v2	cgybcmoB486
CmoCh01G017080	Carg10764	Silver-seed gourd	carcmoB1045
CmoCh01G017080	Carg02845	Silver-seed gourd	carcmoB0874

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh01G017080	CmoCh09G004200	Cucurbita moschata (Rifu)	cmocmoB020

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh01G017080	Watermelon (Charleston Gray)	cmowcgB421
CmoCh01G017080	Watermelon (Charleston Gray)	cmowcgB433
CmoCh01G017080	Watermelon (97103) v1	cmowmB460
CmoCh01G017080	Cucurbita pepo (Zucchini)	cmocpeB448
CmoCh01G017080	Watermelon (97103) v2	cmowmbB471
CmoCh01G017080	Wax gourd	cmowgoB0634