CmoCh01G014890 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh01G014890
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Unknown protein
Location	Cmo_Chr01 : 11530791 .. 11532673 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CGCCAAAACCTTTCTTCTTATTGGACTTGTTAGGCAGCTCCTGAAAAACCCTAATTCTCACCTTCTTCTCTCCGTTCATTTCCAATGGCTTCCCGCTGTCGATCTCTTGCAACCCCAACTATTTCCCTCATCAAATCCACCTTAACCAAACCCTCCATTAAAGCAACACCAGCTTCTTTCTTCACCGTTCGTTCTTCGCCCACAATTTCCAGGCAAGCGAGTTTATTGATCACTTTTTTTGCCCCATTAGTGAATTTTCTTTTCTTTGTGATTTTACCATTTACTTAGGGTTTAAGAGTGATTTGATTCTTCAGGTTGGTTCCGCGGTTGGGTTCCCTTGAATCTCTGCTTCCCCTTCATTCAGCAGTCTCTTCGGCGCGGCTAACTTCGTGTCTTGGAATCGATTCGGTGTCTTCGAGGTCATTGTCTCAGGGTATGCTCTGCAGTGCCAATCCAGGAGTTTGATATCTCCATTCTTTGTAATTTTTTATCTGTAAGCAACTTTTTAACTCTTGTATATGAATGGATTTTCTATTGTTTGTTATGATTCTCCCTAAATATAGTCCAATTTGAAGTTTTTTCCATTAGTTTATGTGTTAAGTTTTTCAGTACCACCTTTTTCCCCTCCAAATATTTGCTCTGATTCGTATCTGCATCTCATTTGAAGGCCTGCTCGGATGACTGTTTCTCATTTGCTTGGGTTTACATATGGGTTTCAATACCTATTTCCTGGGCTTACGAAAGCAACTAAAATTGTAATTAAATTGACATTTGAAAGATGATAATTGATACTCCATGGCCGAACTAGGGAATGTTGTCATATTATAAGAACTATCATTTACATTTGCTGTGCCAGTGTTGAATTTTTATAGGATTTTTATAGTTTTCACTGAATGCATCGTTCATAGAACTCTTGGTTATGCACGTAGTATAAACTTGTATAGTGTTACATCCAATTGTCAATCTGCCCCTAAATGTGCTAATTTATACAGAGGCCTGATCGCATGTACTCTGCTTCAAGTTAGATATTGATATTTTGCAAACAGTATCAGGAGGAGTTATGCTCCTTCAAAGTTCTTCTAATGTTGAAAATACGTACAAGAAGTCACATAAAGACTGTAGCAAGTGCTTTTCAAACTGGTCCTGGTCCTGTTATTTTAATATATGGGATTAATTTGTTGTGGGGATTTCATCTATGGTGTTTAAAAATCATTCTGTGGATTTTGCAACCTAAGCTTACATTCTTCATAATTCAATATTTTTCGAGATACTAAAATGTTATTACATAGACATACAGAAAGTCTATTTATGGCAATTCAATATGCTCCAGTATGATCGGTTATTATTGAAACCAACAAATTTTCTTAAAGGATTCAAGTAGTTGTCAAGAATTTTGTTTTCATTGCTGTTGTAAGTGTTACTCTGGAACTTAGCATCAATCTAATCTTAGCTCCTGAAGGAAATATATTGAATTGGATCTTGAGAAAATGTAGCAGTTGATATGGATTATAGACTAGCTTTCATAGAAAGTAGATAACAACAATACCCATGTAGTGCATTTAGTTGTAGTTAGATAGATGATTGATCACTATAAGACGGAGCAACCCTAGGAATGACTAGTGGTTATTTGGTGATATCATCTCTTCAATTAAAAGATCGAAGTATTTGCTTTCATATGTATGGCCTTCCATATTAGATACTTTTACTTTATCTGACTTCCATTGGTCGTGAAGTACTCGGTTTAGTTGATTCGTAATCAGCATTATAGAGGATGATAGCATTTATTTGAACTCTGAAGTATCTCCTCCACTTGAAGTAAAATGCTGAAGTAATTCTGGTTTTTTCAATGTGTTTCAGAATTAGGTCTCTGTGTGCCGCGATAA

mRNA sequence

CGCCAAAACCTTTCTTCTTATTGGACTTGTTAGGCAGCTCCTGAAAAACCCTAATTCTCACCTTCTTCTCTCCGTTCATTTCCAATGGCTTCCCGCTGTCGATCTCTTGCAACCCCAACTATTTCCCTCATCAAATCCACCTTAACCAAACCCTCCATTAAAGCAACACCAGCTTCTTTCTTCACCGTTCGTTCTTCGCCCACAATTTCCAGGTTGGTTCCGCGGTTGGGTTCCCTTGAATCTCTGCTTCCCCTTCATTCAGCAGTCTCTTCGGCGCGGCTAACTTCGTGTCTTGGAATCGATTCGGTGTCTTCGAGGTCATTGTCTCAGGAATTAGGTCTCTGTGTGCCGCGATAA

Coding sequence (CDS)

ATGGCTTCCCGCTGTCGATCTCTTGCAACCCCAACTATTTCCCTCATCAAATCCACCTTAACCAAACCCTCCATTAAAGCAACACCAGCTTCTTTCTTCACCGTTCGTTCTTCGCCCACAATTTCCAGGTTGGTTCCGCGGTTGGGTTCCCTTGAATCTCTGCTTCCCCTTCATTCAGCAGTCTCTTCGGCGCGGCTAACTTCGTGTCTTGGAATCGATTCGGTGTCTTCGAGGTCATTGTCTCAGGAATTAGGTCTCTGTGTGCCGCGATAA

Homology

[Close]

BLAST of CmoCh01G014890 vs. TrEMBL
Match: A0A0A0LE59_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G895660 PE=4 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 8.6e-24
Identity = 68/87 (78.16%), Postives = 77/87 (88.51%), Query Frame = 1


Query: 1  MASRCRSLATPTISLIKSTLTKPSIKATPASFFTVRSSPTISRLVPRLGSLESLLPLHSA 60
          MASR RSLATP+ISLIKST+TKPSIK  PA+ FT+ SSP +SR  P+LGSL+SLLPLHSA
Sbjct: 1  MASRFRSLATPSISLIKSTITKPSIKPRPAASFTLCSSPALSRSFPQLGSLQSLLPLHSA 60

Query: 61 VSSARLTSCLGIDSVSSRSLSQELGLC 88
          VSSARLTSCLGIDS+SSRSLSQ + LC
Sbjct: 61 VSSARLTSCLGIDSLSSRSLSQGM-LC 86

[Close]

BLAST of CmoCh01G014890 vs. TrEMBL
Match: V4TTR6_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10010039mg PE=4 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 1.8e-21
Identity = 65/91 (71.43%), Postives = 73/91 (80.22%), Query Frame = 1


Query: 1  MASRCRSLATPTISLIKSTLTKPSIKATPA-SFFTVRSSPTISRLVPRLGSLESLLPLHS 60
          MASR R+L+  T  L+KSTLTKP++K  P  S  + RSSPT SR V +LG L+SLLPLHS
Sbjct: 1  MASRYRALSKSTHFLLKSTLTKPTLKPNPLPSLLSTRSSPTFSRSVHQLGCLQSLLPLHS 60

Query: 61 AVSSARLTSCLGIDSVSSRSLSQELGLCVPR 91
          AVSSARLTSCLGIDS SSRSLSQELGL VPR
Sbjct: 61 AVSSARLTSCLGIDSTSSRSLSQELGLSVPR 91

[Close]

BLAST of CmoCh01G014890 vs. TrEMBL
Match: A0A087G6C1_ARAAL (Uncharacterized protein OS=Arabis alpina GN=AALP_AA8G113100 PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 3.4e-20
Identity = 59/91 (64.84%), Postives = 73/91 (80.22%), Query Frame = 1


Query: 1  MASRCRSLATPTISLIKSTLTKPSIKATPAS-FFTVRSSPTISRLVPRLGSLESLLPLHS 60
          MASRCRSL+ P  S+ +S + KPS++  PAS FF    SP ++R + +LGSL+SLLPL+S
Sbjct: 1  MASRCRSLSKPAFSMFRSAMNKPSLRPKPASSFFGAPPSPGLTRPIAQLGSLQSLLPLYS 60

Query: 61 AVSSARLTSCLGIDSVSSRSLSQELGLCVPR 91
          AV+SARLTSCLGIDS +SRSLSQELGL VPR
Sbjct: 61 AVASARLTSCLGIDSRNSRSLSQELGLSVPR 91

[Close]

BLAST of CmoCh01G014890 vs. TrEMBL
Match: M5Y5T4_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa014000mg PE=4 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 7.5e-20
Identity = 61/91 (67.03%), Postives = 71/91 (78.02%), Query Frame = 1


Query: 1  MASRCRSLATPTISLIKSTLTKPSIKA-TPASFFTVRSSPTISRLVPRLGSLESLLPLHS 60
          MASRCRS +    S +KST+ KP++K  + +S  T R S T+SR  P+LGSL+SLLP HS
Sbjct: 1  MASRCRSFSKSAFSFLKSTVNKPTVKPRSMSSLPTTRPSLTLSRPTPQLGSLQSLLPFHS 60

Query: 61 AVSSARLTSCLGIDSVSSRSLSQELGLCVPR 91
          AVSSARLTSCLGIDS SSRSLSQELGL VPR
Sbjct: 61 AVSSARLTSCLGIDSRSSRSLSQELGLSVPR 91

[Close]

BLAST of CmoCh01G014890 vs. TrEMBL
Match: A9PDD8_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s25420g PE=2 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 1.7e-19
Identity = 63/92 (68.48%), Postives = 72/92 (78.26%), Query Frame = 1


Query: 1  MASRCRSLATPTISLIKSTLTKPSI--KATPASFFTVRSSPTISRLVPRLGSLESLLPLH 60
          MASR RSL+ PT SL+KST  KP++  K+TP S    R S T SR VP+LG+++SLLP H
Sbjct: 1  MASRYRSLSKPTFSLLKSTTNKPTLQPKSTP-SLLPARPSLTFSRPVPQLGAIQSLLPFH 60

Query: 61 SAVSSARLTSCLGIDSVSSRSLSQELGLCVPR 91
          SAVSSARLTSCL IDS SSRSLSQELGL VPR
Sbjct: 61 SAVSSARLTSCLSIDSRSSRSLSQELGLSVPR 91

[Close]

BLAST of CmoCh01G014890 vs. TAIR10
Match: AT5G11630.1 (AT5G11630.1 unknown protein)

HSP 1 Score: 87.0 bits (214), Expect = 6.3e-18
Identity = 54/88 (61.36%), Postives = 66/88 (75.00%), Query Frame = 1


Query: 1  MASRCRSLATPTISLIKSTLTKPSIKATPAS-FFTVRSSPTISRLVPRLGSLESLLPLHS 60
          MASRCRSL+ P  S  +S + KPSI+   AS F  V  SP  SR + +LGSL+SLLPL+S
Sbjct: 1  MASRCRSLSKPAFSAFRSAMNKPSIRPKSASSFIGVPPSPGFSRPIGQLGSLQSLLPLYS 60

Query: 61 AVSSARLTSCLGIDSVSSRSLSQELGLC 88
          AV+SARLTSCLGIDS +SRSL+Q + LC
Sbjct: 61 AVASARLTSCLGIDSQNSRSLAQGM-LC 87

[Close]

BLAST of CmoCh01G014890 vs. TAIR10
Match: AT4G17310.1 (AT4G17310.1 unknown protein)

HSP 1 Score: 58.5 bits (140), Expect = 2.4e-09
Identity = 45/94 (47.87%), Postives = 56/94 (59.57%), Query Frame = 1


Query: 1  MASRCRSLAT-PTISLIKSTL--TKPSIKATPASFFTVRSSPT----ISRLVPRLGSLES 60
          MAS CR L    ++S +KSTL  T  S  A  ++ F + S PT     SR    LG ++S
Sbjct: 1  MASACRKLFNRASVSSLKSTLRSTTGSTSAASSAGFRLPSQPTRHFSFSRCPSELGCVQS 60

Query: 61 LLPLHSAVSSARLTSCLGIDSVSSRSLSQELGLC 88
          LLPLHS V++ARLTSCL   S SSR+LSQ    C
Sbjct: 61 LLPLHSTVAAARLTSCLSTTSRSSRALSQGTLCC 94

[Close]

BLAST of CmoCh01G014890 vs. NCBI nr
Match: gi|659132190|ref|XP_008466067.1| (PREDICTED: uncharacterized protein LOC103503603 isoform X2 [Cucumis melo])

HSP 1 Score: 139.8 bits (351), Expect = 2.3e-30
Identity = 76/90 (84.44%), Postives = 84/90 (93.33%), Query Frame = 1


Query: 1   MASRCRSLATPTISLIKSTLTKPSIKATPASFFTVRSSPTISRLVPRLGSLESLLPLHSA 60
           MASR RSLATPTISLIKST+TKPSIK  PA+ FT+ SSPT+SR +P+LGSL+SLLPLHSA
Sbjct: 35  MASRFRSLATPTISLIKSTITKPSIKPRPAASFTLCSSPTLSRSIPQLGSLQSLLPLHSA 94

Query: 61  VSSARLTSCLGIDSVSSRSLSQELGLCVPR 91
           VSSARLTSCLGIDS+SSRSLSQELGLCVPR
Sbjct: 95  VSSARLTSCLGIDSLSSRSLSQELGLCVPR 124

[Close]

BLAST of CmoCh01G014890 vs. NCBI nr
Match: gi|449436884|ref|XP_004136222.1| (PREDICTED: uncharacterized protein LOC101217801 isoform X2 [Cucumis sativus])

HSP 1 Score: 134.8 bits (338), Expect = 7.4e-29
Identity = 74/90 (82.22%), Postives = 82/90 (91.11%), Query Frame = 1


Query: 1  MASRCRSLATPTISLIKSTLTKPSIKATPASFFTVRSSPTISRLVPRLGSLESLLPLHSA 60
          MASR RSLATP+ISLIKST+TKPSIK  PA+ FT+ SSP +SR  P+LGSL+SLLPLHSA
Sbjct: 1  MASRFRSLATPSISLIKSTITKPSIKPRPAASFTLCSSPALSRSFPQLGSLQSLLPLHSA 60

Query: 61 VSSARLTSCLGIDSVSSRSLSQELGLCVPR 91
          VSSARLTSCLGIDS+SSRSLSQELGLCVPR
Sbjct: 61 VSSARLTSCLGIDSLSSRSLSQELGLCVPR 90

[Close]

BLAST of CmoCh01G014890 vs. NCBI nr
Match: gi|659132188|ref|XP_008466066.1| (PREDICTED: uncharacterized protein LOC103503603 isoform X1 [Cucumis melo])

HSP 1 Score: 122.5 bits (306), Expect = 3.8e-25
Identity = 70/87 (80.46%), Postives = 79/87 (90.80%), Query Frame = 1


Query: 1   MASRCRSLATPTISLIKSTLTKPSIKATPASFFTVRSSPTISRLVPRLGSLESLLPLHSA 60
           MASR RSLATPTISLIKST+TKPSIK  PA+ FT+ SSPT+SR +P+LGSL+SLLPLHSA
Sbjct: 35  MASRFRSLATPTISLIKSTITKPSIKPRPAASFTLCSSPTLSRSIPQLGSLQSLLPLHSA 94

Query: 61  VSSARLTSCLGIDSVSSRSLSQELGLC 88
           VSSARLTSCLGIDS+SSRSLSQ + LC
Sbjct: 95  VSSARLTSCLGIDSLSSRSLSQGM-LC 120

[Close]

BLAST of CmoCh01G014890 vs. NCBI nr
Match: gi|449436882|ref|XP_004136221.1| (PREDICTED: uncharacterized protein LOC101217801 isoform X1 [Cucumis sativus])

HSP 1 Score: 117.5 bits (293), Expect = 1.2e-23
Identity = 68/87 (78.16%), Postives = 77/87 (88.51%), Query Frame = 1


Query: 1  MASRCRSLATPTISLIKSTLTKPSIKATPASFFTVRSSPTISRLVPRLGSLESLLPLHSA 60
          MASR RSLATP+ISLIKST+TKPSIK  PA+ FT+ SSP +SR  P+LGSL+SLLPLHSA
Sbjct: 1  MASRFRSLATPSISLIKSTITKPSIKPRPAASFTLCSSPALSRSFPQLGSLQSLLPLHSA 60

Query: 61 VSSARLTSCLGIDSVSSRSLSQELGLC 88
          VSSARLTSCLGIDS+SSRSLSQ + LC
Sbjct: 61 VSSARLTSCLGIDSLSSRSLSQGM-LC 86

[Close]

BLAST of CmoCh01G014890 vs. NCBI nr
Match: gi|567917394|ref|XP_006450703.1| (hypothetical protein CICLE_v10010039mg [Citrus clementina])

HSP 1 Score: 109.8 bits (273), Expect = 2.6e-21
Identity = 65/91 (71.43%), Postives = 73/91 (80.22%), Query Frame = 1


Query: 1  MASRCRSLATPTISLIKSTLTKPSIKATPA-SFFTVRSSPTISRLVPRLGSLESLLPLHS 60
          MASR R+L+  T  L+KSTLTKP++K  P  S  + RSSPT SR V +LG L+SLLPLHS
Sbjct: 1  MASRYRALSKSTHFLLKSTLTKPTLKPNPLPSLLSTRSSPTFSRSVHQLGCLQSLLPLHS 60

Query: 61 AVSSARLTSCLGIDSVSSRSLSQELGLCVPR 91
          AVSSARLTSCLGIDS SSRSLSQELGL VPR
Sbjct: 61 AVSSARLTSCLGIDSTSSRSLSQELGLSVPR 91

The following BLAST results are available for this feature:

BLAST of CmoCh01G014890 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh01G014890 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LE59_CUCSA	8.6e-24	78.16	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G895660 PE=4 SV=1	[more]
V4TTR6_9ROSI	1.8e-21	71.43	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10010039mg PE=4 SV=1	[more]
A0A087G6C1_ARAAL	3.4e-20	64.84	Uncharacterized protein OS=Arabis alpina GN=AALP_AA8G113100 PE=4 SV=1	[more]
M5Y5T4_PRUPE	7.5e-20	67.03	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa014000mg PE=4 SV=1	[more]
A9PDD8_POPTR	1.7e-19	68.48	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s25420g PE=2 SV=1	[more]

BLAST of CmoCh01G014890 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G11630.1	6.3e-18	61.36	unknown protein	[more]
AT4G17310.1	2.4e-09	47.87	unknown protein	[more]

BLAST of CmoCh01G014890 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659132190\|ref\|XP_008466067.1\|	2.3e-30	84.44	PREDICTED: uncharacterized protein LOC103503603 isoform X2 [Cucumis melo]	[more]
gi\|449436884\|ref\|XP_004136222.1\|	7.4e-29	82.22	PREDICTED: uncharacterized protein LOC101217801 isoform X2 [Cucumis sativus]	[more]
gi\|659132188\|ref\|XP_008466066.1\|	3.8e-25	80.46	PREDICTED: uncharacterized protein LOC103503603 isoform X1 [Cucumis melo]	[more]
gi\|449436882\|ref\|XP_004136221.1\|	1.2e-23	78.16	PREDICTED: uncharacterized protein LOC101217801 isoform X1 [Cucumis sativus]	[more]
gi\|567917394\|ref\|XP_006450703.1\|	2.6e-21	71.43	hypothetical protein CICLE_v10010039mg [Citrus clementina]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

Vocabulary: **Biological Process**
Term	Definition
GO:0006952	defense response

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006952	defense response
biological_process	GO:0071433	cell wall repair
biological_process	GO:0042742	defense response to bacterium
biological_process	GO:0050832	defense response to fungus
biological_process	GO:0048364	root development
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh01G014890.1	CmoCh01G014890.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33156	FAMILY NOT NAMED	coord: 1..85 score: 4.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh01G014890	Cucsa.312550	Cucumber (Gy14) v1	cgycmoB0863
CmoCh01G014890	Cla023110	Watermelon (97103) v1	cmowmB456
CmoCh01G014890	Csa3G895660	Cucumber (Chinese Long) v2	cmocuB441
CmoCh01G014890	MELO3C003465	Melon (DHL92) v3.5.1	cmomeB407
CmoCh01G014890	ClCG11G015140	Watermelon (Charleston Gray)	cmowcgB391
CmoCh01G014890	CSPI03G46090	Wild cucumber (PI 183967)	cmocpiB445
CmoCh01G014890	Lsi04G023290	Bottle gourd (USVL1VR-Ls)	cmolsiB420
CmoCh01G014890	MELO3C003465.2	Melon (DHL92) v3.6.1	cmomedB466
CmoCh01G014890	CsaV3_3G048540	Cucumber (Chinese Long) v3	cmocucB0531
CmoCh01G014890	Cla97C11G221140	Watermelon (97103) v2	cmowmbB437
CmoCh01G014890	Bhi09G002174	Wax gourd	cmowgoB0615
CmoCh01G014890	CsGy3G043590	Cucumber (Gy14) v2	cgybcmoB338
CmoCh01G014890	Carg00384	Silver-seed gourd	carcmoB0922

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh01G014890	Silver-seed gourd	carcmoB0873
CmoCh01G014890	Cucurbita moschata (Rifu)	cmocmoB019
CmoCh01G014890	Cucurbita maxima (Rimu)	cmacmoB049
CmoCh01G014890	Cucurbita maxima (Rimu)	cmacmoB468
CmoCh01G014890	Cucurbita pepo (Zucchini)	cmocpeB448
CmoCh01G014890	Cucurbita pepo (Zucchini)	cmocpeB466