CmoCh01G014080 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh01G014080
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Protein LSM14 like B
Location	Cmo_Chr01 : 11073025 .. 11084810 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTCTCAAAAGACTTCGATACGAAGAATCGCGAAGAAGCATAGTAACGTTGCTCCAAATTAAGCTCAGCGGAAAAACCCTAATCGTCAGGATCGCTGCGAGTTACAGAGTTTGATTCTTCCAATTTCAGTTTCACTTCACGTTTCTCTGTTATTTAACATCCATCTCGAGGTTTTGAGGTTTTATTGATCGATGGCGACTGAATCTGCCTCCGAAGTTTCTGCTAGTCCCGTGGGATCATACATCGGGAGCACGATAAGTTTGATTACGAAATGTGAGATTCGTTACGAAGGCATTCTCTACCACCTCAACATTCAAGAGTGTACCATCGGCTTGGCGAATGGTATGTAGGAAATCGTGATTTTCTTAGCGCTCTTCGCTTCCAGTTCTATAGCTATCTCCATGGCTCTGTTTATTCTGATTGTAATTTGAATTCCGGCGTTTGCATGTTTGAATTTATGTAATAAATATTTTCTCTATAATGTTCGGAAATTTGTCTATACCAGTCGCTATTGGCACATGTATGGTCATTACTTGTTAGTAGAATAGTTGGTATTGTAGACGGAGATAATATTACTTAGACACAGACGATTCTATTCCGGTCACTGCCAGTAAACGCCGATTGCTTATTATTATTTTTTAATTTTTTATTCCAAAAATTCATTACTTCTTGGTTTTCCATATATATATATATATATATATATATATATATATATTTGGTGTAGTCATTGACAAGTATGATCAGTTTTATGTACTTCATTTCGGGTTTTGTTAGCAACGCCTGCTTCCCATTGAATAAGGATTTATTTTGACAAATTTCTTAAGATTATTTGTTAAGGTCAATCACTATATGTGTTAGAACGATATTCAATACTTAAATATTAAGAGTCGCATCATTTGTTGTTACAGTTAGATCTTATGGGACAGAAGGACGAAAGATCGATGGTCCACAGATCCTTCCGAGCGATGAGGTGTATGAGTATATTCTGTTTCGAGGCAGTGACATCAAGGTAACACAGATGTGTTTAATTACATTCCCATCTCATCGCTCCCCAATAGACCAATGCACTATGATTGTATTTGGTTTAGAGCTTTAAAATTTAAAATATAACGTTGCCTTGTTCTAGTATTGATCACTTTTCCCCTCCTCACCACATTTAAGTTTTCAGAAAGGTGTGTATAGAACAGAGACAAGAAACATGGGATTAGATGCATATCTTCAAAGATTAACCTTTGAAAGCAATGTAACTTGTGGCATCTTTCTCTTCTAATTTTAGTAAATGAGTCCTGATATAACATTGAAAAAAGGTTTCTGCATCCCCCAAGTTTTTCCTCCTACCTTCTTGAGTTTGTATCTTAAGGTAGAGCTCTAGGAACCGCTCAGGGGTGCCAAACTGTTCTTAGGTCATGAAATCACGCTTCCGTTTATTTCTCACTTAAAACTTTCAATGTCAGCTAGGATAATGATGTTTCTGTTGTAAAAAAAAATCAAAACTAACCCTGCATGCAGTAAGGGGTATGTGCACACTATTTGCTATACATTTTCATAAATAAAACTACTCGATATAGTTTGAGTCCATTTTAGAAAGGGTTTTTATTATAACAGGATCTGCAACTCAAGTCCCCCTCATTTGCTGAAATGGACAAGCAGATTCATGATGGCTCTGTGATCCAGGTACTCTTGTTTGACTATTATTATAGAAAGAATTAGCCCAATTTTACATGAAAAAGATAATCTCATGTACCTTTCCCTATGCAGTCGAAGCATGCTGGGTTCTCAACCTCACCACTCTATCCTTCAGTTGGATGTGAAACATCGACGGTCTCAAATCAGAGCCAGGATTCTCTGGCTTTTAATAATGGACAGTATCCAAGCAAGTTGTCTTCACATCAATCTGTTGCTGCAGGTAACATTTTACATAGTTATTCGTTGCCCATACAGAACTGTCATTTTCTGTACCCAAGCAGCAGTCAGAGAAGAAAAAGGAAAACAATGGGGAATCCCTTTGTACCAGTTTCTGAAGTACATTGACATTTCAATTGGCAACAGAGAACCAACGGACTCTTCAAAATCATTTAAATATTGACTTATGATTTACTGAAAACTTAGAATTGTGCATGTGCTGATCCTGTATCATTTCTACTTTTTGCACGTCCTAGTTTTTATCAGCTAATAGATAGTTCACAACCATGTTGTGTTTGTTCACCATCTCATTCAACAGTGATGACATCTACTTCTTCCTTTCCTTCAGTCTGGCAAGAAATTGGAAATAACAAAGCTCAGATTACGGGTAAACCTATATTCCACCCAACATCAATTCTTTCCAGGCAGTCTGTTCTGAATACTGCACCTTCTATTTCGGGTTCGGGTCCATTGCTCACATTGCCTGCACCTTCATTAACTCCTTATCAATTATCACAGTCTGGGGCAGAGGTACTTTCCTCCACAAAGAAACTGTGTGTTGATGCAAGGAACTTGGGTGCTTCTAATTCTTCGATATCAATTGCTGCGGTTGAACATCAAACACCCTCGTTTCCATCTCTGAGAGAGATGCCTCCTCAACAGGTTTTTACCTTTATAAAGTTTTCTAAATTATTTTTCATATAATTACTTCCTTGTAGTTCACATCATTTGGTCTATTTATTTTGTATAACTTGTTGATTTATGCTGAACAGTAAGTGGTTTTGAGCTCAATATTGAATAGTGTTTTCTTCTTCTCGAATAATCAGTATTCAGTAGTTGGTGATATTCTTGGTAATAACCTGAAAGTTACAATGTGGTTCCATGGATCTCACTGAAAATGTCTCATGTTTCTTATGGCTTTTTTGATGACCCTAAAATCAGCCCTCTACTAGCCAAAATCTTGCCTCTAGACCTATCGTTATCAAAAAAATTAGTTATGGAGACAACCTTTAATCCAACGTCTACATCAAAACCTTTCAACTCCATAATCAAGTCTAGGAAATGCCACTCAACTTTAACATAAGCTTTTTCGAGGTCTAACTTGAGAATAAAGCCTCTCGTCCAAGGTCTCCGATACAACTAAGATAGCATCCAAAATCTGTCACCACATCCACAAAGTCAGCATGGCAATTGCTAATTGTAATAGCCATCGCTTTCTTCAACCTCTCCGCTGGGACTTCAGGAATAATTTTGTAGAGAGAAGTGACCAGGCTAATTGGGTGGAAGTCACTCACCCTAGAAGCTTTCTTCTTCTTGTGGATCAAACAAATACAAGTCTCATTGGTCTTATTAAAAAAAAAAAAAAAAGTCATTTTCAATAAACTCTTGGAACACTACTACTAAATCAGCCTTCAAGATGTTTCAAGAATTTTTTTTTTAGGTAAAAGTCGCCTGTCATACCACCTGGCCCTCTGGCCCTGGAGATTTAAGGCATTGAACTGCTTTAAGGATTTCTTCCTCAAGAAAGGGACTTTCCGGTGAAGTCTGACACTGAGCTTCTAACGGCGCCCAATCAATCCCAACAAGAGTGAATCTCAGGCTCTCTTTGCAATAAAGCCTCTGGAACAAACCAATACTTTCATCTTAAATTCCTTCTCTGAGGATAAAAAATCCCGTCTTCTCCTGATAAAGTAGAAATAACGCTTTGATAAAAGAATGTGTTCTCATCGCCTTCTTCAAGCCATTTAATCTTGCCTTCCTGATCAAATAAGCGCTGCTCCTTAATAGTAAAATCCATCAGCTTGGCTTTTATAGAGATTCTAGCGGCCCTTTGACATCTGATAATTTGATAATACATTGTACTTGAAGAACTTGAGCCAAAATGATAAAATTATAAAAGCACGACGCAATCATAGGATCTAAAGTAAATCTTTGAAAAGATGATACTTCAGATGTGCAAGGGTACCATTGAGTGGAAAGCCTTCTTTTTTGGTGTTGAGGATTATTGAAAGGACTAGTCCCACGTTGGCTAATTAAGAGGAAGATCATGGGTTTATAAGTAGGGAACACCATCTTCATTGGTACGAGGGCTTTTGGTGAAACCAAAAGCAAGATCACGAGAGCTTATGCTCAAAATGAACAATATCATACTACTAGAGGTCCGTGATTTCTAACATTTGCCTCTAGTAACATATAGGGGTTAAACTTGAACTGCATTCTCCTTCAAAATTTTATCACCAGGCATGAAAGACGTGCAAGCATTTCTTTCTATCATCATATAATACTTCTTCTGCGCTCCCGTTTTAATTCCTTGTATCTTGCTTCTTTGAATATAGACTACTGTTTGCCACCAAGAACTTTAAATCCCAGATTATAGATTGTTGTAATCCCATGAGTACATTATGGACATAGTTGTTCACTTAAGAATTTGATTATCAATACTCTTCTAATTGTAGTTCACTGAAGAATTTGATTTTCAAGCCATGAACGAGAAGTTCAAGAAGGACGAGGAAGAGAGACATTGGGCGATACCTAGAGCTAAGGTATGGATTGGATCAGTTAGTAATGTCATACATTTCGTTCTTTATATTGGTATTAACCAATTTCCTCTTCTCTTGGGTTTCTTTTTGCAGCCTGCATATAACAAGGATGAATTCTTCGATACAATTTCCTGCAATTCTCTTGAACGTGGATCAAGGAATGGACACAGCCGTTTCTCTAGGCCAATGAAATTTGACTCCGAGGTTTTCTCTCGTTCTGTTTTTCTTGTACATTTCTGTTCTGATATAGCTGATAAGTTGAACAGTTCCTTAGAAATAAAGCGGGATTTTGCAGACAAGCGGAGGCCTTCCACATATGGGCGGCAATGTTGGGTATGGCGTTAGACGCGGTGAGAATTTCTGGGGCTCAAATAACTTGGGACAGGGATACAATTAATGGTGGTAGAGGGCTTGAAGGGAGCATGCCATTCTGAATCTTAGCCTCTTGTTTGTGTGGCCCTACTGTTATTGAATTGACATATGCACACATCTCCTTGTAATTATTTCCTTCACCACCTTCACCTGGTGCACTTTGGGTTGGGTAGACTTTTGTAACTTATATATTTGATGCATGCATGATTTTTATGTATATTTATGAAAAAAAATAAAAAATTTGCTTCTTAAAAAAAAAATTAATCTTATAAATACTACTTTCAGGGGACTAAATATATGTCTTTACACGCAATAGATATGCTCGATCATAATTTTAGGAGTAAAAAACACTACAAATATTAGAAATGATATCGATTACCATTTCAATTTTGAGATGGAGATTATGAACAATTTGGGGGATTTTCTTTATTGATGATCGAATAAATACAGGAAAAAAAAGAAGGAAAAATATTTGGGTGATGTATATTAACTTCTCGTGGTTATCTAATTTGTGAATTTATTTGAGTGGGCCCTTTAGGGTGGCTCTTCCTTCCAATGGCGGCGGAGGATATGGTGGAGGCCCCATTAATGAGAACCAATAGGGCCGCGCCAACAAATATTCGGTCTTTCACCACATAGCATTCTCCTTCCACCCACCCCTTCCCATACTCTTGTCTGCTGCTCATGCTGATGGCTCCACTCATCATTACCACCGCAATTCCAAAGCTGGCCCTGGTATTTCATTTTATTTACTATTTTAGCCTTTTTTTATTATTTCTTGCCATTCAGTTTTTTATTATTATTATTATTATTATTATTATTATTTTTATTTATAGATTTCATCTGATCTTATATGTTTTTTTCTTGAGCTTGGTTTTCATTTCGTTCCTATCTTTCAAAATTTTACATACTTATCTTCAATTTTTATTACTGATCACTTTTGATAATTTATGTTAATTTTTTATTAATTAGTTTAATTATTATCACTATTTCAATTAATTAAAAAAAATTATACATCATAATATTTAATTAATTAAATCAATACAAAATACCAAAGTCCAAAAGTAAACGATAAGTTATTAACTGAAAAGGTAAAAAGGTAGGATCTCAGAAAAGGTAAAAAGGTAGGATCTCACAACTTAAGGATACAATTACAACTCAACTCCAAATAAAATAATATTTTAAAATTTAGGGACTAAATTGAAGCTATATAAAAAAATTTAAGGATCAAAATGATATTTTTTCTTTATTTCATTTTCCTGGTAAATAGAGGTTAAATTATAGTTTAGTCCTTTAATTTTTTTAACTTTAGAAAATGTATAATATAAATATTTGAACTTTCAATTTTGTGTTTACCAGGTTTATTAATTTTAAAATTTCTAGTAGATTCTAAACTTTCAATTTTATGTCTAGTAATTATGGGAGATGCTCAAAATTTTTAAAAGTTAATTGATCTATTGTATACCATATTAGTTTTTACAAACGATGTAAATCTAAATTTTTAATTTTGTGTTTAGTTGGTCTATGAATAGTTTTTTTTTTGTTATTTTATTTTATTTTAATTAGTTATTGAACACAATTTTAAAAATTTTAATTAGTTATGTATACTAAAAGTTAAAATTTTAAAAAGCTATTAAATACTTTAATTTAGGAGTGTTCTCTTATGTTTGAATTATTTTTTGGTCTTCTTGTTGATGATGAATGTTGAAATTGATTTAGCACCAAAATATTGGAGACTAAATGATACAATAAGTACTATATGTTTTTTCTTAACAATATATGCCCGGAACAAAGTAAATTACTTCATCCTTCAAATAATTCTCATATATTATTATCATTTTAGTATTAATAATAATGCTATTTTGTAGTTTACTTGATCTTGCAAAAAAAAAAAAAAAAAAAAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGGTTTTTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTTACTATTGTTAGTTTCATTTTCTTAATCCCCAGATAAACTGAAAAAAATACAGAAAAAAATGAAGATTTATATGAAGAAATAATTACTGACCAAGAGATGAGAAGGGTGGTTGAAAGGAGAGGCCTTTTGACACTGCAACTCTTTCTATTCTCCTTTGGCCAATAGCTATGGCAGATTATAGTGTTTCCAATGATTTGAGCCATTATTAAACAGATCAAACCTGCGACTCCCAATTTGAATGCTTCACTTTCAGGCAGAAAGCAGAATCTGCCGTTCAATTTCAGGTCCTTTTTCTACCACATATTTCGATTTCGATGATTCAGGAAATTTTTGTATGAAAAATCAATACTGTAAATGAGAAAGAAAGTGAAAGAAGAAACTTACACTTGTTCTGTTGAATTCAGCAGCCATACATGACGCGAAGGAGGCGAGGGTGAGGGTTGCAACAATGGAAAACCCTATCACGAAGAAGCTGGATGGTGGCTTTTCCATGGCGGCCAGAAGATCGAAGAAGTGGGACTGAGTTTAAATCAAGTCATGGTATTTGAAAGGGAAAGGCTCTTCGAGGTTAGTGGTGGAACAATTCATCATTTTCTCTCTTCACTTATGAATGCTGTGACTTTCCTTGAGTCAAATCCCGTGTTTTTCATCTTCATTTCATCACTGGTCAAATACAGACGAAGGGGAAAAGTTGAAGCAGATATTAGAATTTAAATTGATGGGTTTTCTTTTTTCTTAAATCTTTGGCCAATGGATTAAGGTTTAGTTGGTGGACTTGAACATTTGATAATGACACCCTTCCCCAGATACCCGTTTACCTGAAACTTATTAAACACAAGAAAAGGATTGAAATTCCACCACATGAAAAAGCCATTAGAAAAAGAAGGGGAGAGAGGGATTAGATAGAGCTGAGCTGACCTATTGTAGGAGGGAGTCAAGTTTTGTAGGGGACCCAGCTGACTGATGACTTTAAAGAACTGGTTTTCATGGGGGAATGGAATAATATGAAAGCCTTGGACATCTGATGCTCTTAGGAAGCTTCAACTTCAAATGTTTCTTTTTGGAAAGTTCCTCAAAGATGCCTCACCCTCCTCCTCTCCTTTTCCGCTCTCATTTATTTATCCTCTTTACAAATTTGTATTAGTAGTAGGTCAACACGCTAAGCTGGAGGAATTTGAAATATTGACCTTTTAGTCGAGAATTTATCTTATCCTATTGAACTATGTTCACGTTGACTATTTGAGATACTGAATAGGTAGCAAGAGCTACTTGGTGCTCTCACCCGCTTTCTTATATGTATTCAATGGAATGCATATCTTTTTTTTTTTATTTTTTTTTTTTATCTTTTGTCTCTTTCAAACCAATAAACCAAGATTATAATTTGAGAGTTAGAGTCCGATTTTCTGGTAAGAGAATTACTAATTTGGTATGAAACCAATAATCATCTATGAGTTATAGTAAATACCTATACCAATCATGAAAATGAAAATGAAAGAGATTGATTTATGATTTGGTTCTTTCATTTATGTTCTTAATAAACTAGTTAAACTAACCTATGTCTTGGACCTGAGGTTAACCTCCTGACTCAATTGAAGTAAAAAATAGAAAAAGTTTGACTCAAATTTTGATTTTGTTCTTATTCTAAAAAAAAAACAACCGGATATGAGTTTTCTTATGAAGAGACGCATCTTGATCAGGGTTAGAAGTTCCAAACCTTGTTTGTCTCTAGAATTTAAAATCTCTCTTCTTGTGACAAAGAAAGATTTTTCAATCCTCTTTAAAATAGATTCTGTTTATACAATCAAATGCCCTTTTGATTTCCGAGAAGATCTATCTGTTTAACCCATCTTAGTTTTGTCCAACCCATTATGAAGCACACCCTTCTTTATATTATTTTCAGAATGTTCATCCAAACCATAAAAATTCCCAAATAAATGAGCTCCAAACATGTCCTTTATCACAAACACCACCTGATATATTAACCCCAAATTACATCAATTTCTCTTCCTCTTAAGAGTTTCAAGGACGGATTGCGCAGTGCAATAAGCAATAGCCTGAACAGTAACCATTGGATTCACTCCCAAAGCAGTTGGAAAAACACTGGAATCAGCAATAAAGAGCCCTTCCACTTCCCATGTTTCCCCTCTCTGATCCACCACAGAATCCCTTGCTCCAATTCCCATTCTGCAACTTCCCATTTGGTGAGCCGAACAGATTGGCGTCTTCAAATCCTTCAATGCCCTTGAACTTTCCTCTTTCACAAACTTCTCATACTCACGGTAACTCACTTTCTTCACATTTATGCTTCTTCCCTTGTTATGGTGGGTCCCTATTTCCTCTGCCCCAGCTGCCGCCAAAATTTTCAAAGCCTTCTCTAGTCCTTTCTGTAGATTCTCTTCGTCCACTTCCTCCATATTGTAGCTGATACAGTTTGGAGATTTGACTGTTCCTGATCCTTTATCTCTTGCCAATACAAATACATGGGCTGTCCTGGAAAATTTGCGCATTCTTTGCTTTATATTTGTCCCAGAGAGCCATGGCATTAAGATTGAGAAGAGTCCTGGGTGCAATGCTGGTGTCTGAATTACTGCTCCTCCACTTCCAGGTTCTTGATCTGGTTCTGATCTAATGTTGCACATGGCTGTCATTATCCCACCTTCATAGCTTTTTTTGTGTTCCTCTGGCCATGGTTTATCTGTAATGGAAGAATGATTTAATGAATTTGTTTAACATTTTGGTAGGTCTCACTTATTAGACATTAGGGACCCATTAGACTCAAACATGAAAGTTTAAGGACAAAATTTGTAATTTCACTTAAGAAGTATGTTTTTCAGAAGACTTGCCAAAACACTGTTGGGAGAGGAGTCCCATACTGACTAATTAATGGGTTGATCGTGAGTTTATAAGTAATTGGTATGAGGCCTTTTGGGGAAGCCTAAAGTAAAGCTACGAGAGTTTATGCTTAGAGTGGACAATATCATACTATTGTGGAGAGTCGTTATTCCTAACCAACAAAGCTAATTTTTCTCGGTTTTTACAGTGTAATGTGATATTATAATGCTATTGCTTATGTTGTTTTTTTTTTTTTTGTTGGGTAGAAATATGATAATATCAGCTATCACATACCAGTTTCTGCAGGGAAATGGCCCCACGCCATTGTTACAGGATGAAGATGCAAGTTTTTGCCAATATTTGGATTCCTCAAGCCGCTTCTTAGCAACAATGGAGGAGTACTGAGAGCCCCACATGCTACTATAGTCACCTTGGACTCAACCAAGCACACCTGTTTCACTCCTGAACCACACCCAAACTCGAACGCAATGCCTTTCGCTCTGTTGCGTTCGCTCCCGTCTTTCTTCTCCTTCCTGATATCAATGGCTTCGCAGCCGGGAAGTATCACGCCATTTCCCGACCTCACCAAGTCCACAAGCCATGTCTCTGCAGTGCCCTTCTTTCTCCCATCTTTGCAGCCTAGACAGCACCAGCCACAATAATGATCAGAAGTTGAATTTCTAGGAATATTGATAGCATGGTAACCCAATTCTTCACACCCTTTTCTTAAAACTGCATTGTTAAACCCTTCATTATCAATTTCTGATTGAACTCCCATTTTCTTGCACACAACTTCCATTGCTTCCTTGTATAAATTGCTGCTGAACAGCTCCAATTCATACTTATCTGACCATTCTCTTGTTACATGGCTTGGTGTTTGAATTGAAGCTGACCAATTCACTGTTGAGCCTCCACCAACAGTAGAGCCTGCAAGTACAAGCACATTCATGTTATCAGTTGCTACTAACCCACTTGAAAGGTACATTTCTTCCATGGCTGGTCCTTCAAGGAGTGACAGATTTGTTCTTGCACAATAGCTTCCTTTCTCTAATACAACCACTTTGTACCCTGCATTGGCAAGCACTCCAGCCACCACTCCGCCACCCGACCCAGACCCGACAACCACCGCATCGCACTTGATGATCATTGAAGGGCTGGAAGCTTTGATCATTGGGGATAGAAGAGTGACTGGAAATCCAAACTTTCTAAGTGCTTCTGCTGCTGCTGCTGCTGCTACTTGTTGGTTGTCCAGATGGACAATGCCTTTGAATAGAGGTCCGTAAAGCTCTTCTTCATCTTCCTCAACTTCTCTTGATGCTTCTAACTGCTTGGTTTTGGCTTTGAATTGGGGGTCCGCTCCCGGGTAGTCTATCGCTTGCCATGATATGTTGTTCGTTTTATCATCAACCTGATCCAACCACAAAATAGAAAGACCCATTTTTCTCATCGAGTCGGGTAGAGATCAAAGGTCTCGAAATATAGTTCAATATATCATAAAAAATACCCGACTAATTGATTCTCTCATTAGACCAAATGTAGCTAAAGTTAAGAAGTTGCTACAACTCTAACCCGGTT

mRNA sequence

TTTCTCAAAAGACTTCGATACGAAGAATCGCGAAGAAGCATAGTAACGTTGCTCCAAATTAAGCTCAGCGGAAAAACCCTAATCGTCAGGATCGCTGCGAGTTACAGAGTTTGATTCTTCCAATTTCAGTTTCACTTCACGTTTCTCTGTTATTTAACATCCATCTCGAGGTTTTGAGGTTTTATTGATCGATGGCGACTGAATCTGCCTCCGAAGTTTCTGCTAGTCCCGTGGGATCATACATCGGGAGCACGATAAGTTTGATTACGAAATGTGAGATTCGTTACGAAGGCATTCTCTACCACCTCAACATTCAAGAGTGTACCATCGGCTTGGCGAATGTTAGATCTTATGGGACAGAAGGACGAAAGATCGATGGTCCACAGATCCTTCCGAGCGATGAGGTGTATGAGTATATTCTGTTTCGAGGCAGTGACATCAAGGATCTGCAACTCAAGTCCCCCTCATTTGCTGAAATGGACAAGCAGATTCATGATGGCTCTGTGATCCAGTCGAAGCATGCTGGGTTCTCAACCTCACCACTCTATCCTTCAGTTGGATGTGAAACATCGACGGTCTCAAATCAGAGCCAGGATTCTCTGGCTTTTAATAATGGACAGTATCCAAGCAAGTTGTCTTCACATCAATCTGTTGCTGCAGTCTGGCAAGAAATTGGAAATAACAAAGCTCAGATTACGGGTAAACCTATATTCCACCCAACATCAATTCTTTCCAGGCAGTCTGTTCTGAATACTGCACCTTCTATTTCGGGTTCGGGTCCATTGCTCACATTGCCTGCACCTTCATTAACTCCTTATCAATTATCACAGTCTGGGGCAGAGGTACTTTCCTCCACAAAGAAACTGTGTGTTGATGCAAGGAACTTGGGTGCTTCTAATTCTTCGATATCAATTGCTGCGGTTGAACATCAAACACCCTCGTTTCCATCTCTGAGAGAGATGCCTCCTCAACAGTTCACTGAAGAATTTGATTTTCAAGCCATGAACGAGAAGTTCAAGAAGGACGAGGAAGAGAGACATTGGGCGATACCTAGAGCTAAGCCTGCATATAACAAGGATGAATTCTTCGATACAATTTCCTGCAATTCTCTTGAACGTGGATCAAGGAATGGACACAGCCGTTTCTCTAGGCCAATGAAATTTGACTCCGAGACAAGCGGAGGCCTTCCACATATGGGCGGCAATGTTGGGTATGGCGTTAGACGCGGTGAGAATTTCTGGGGCTCAAATAACTTGGGACAGGGATACAATTAATGGTGGTAGAGGGCTTGAAGGGAGCATGCCATTCTGAATCTTAGCCTCTTGTTTGTGTGGCCCTACTGTTATTGAATTGACATATGCACACATCTCCTTGTAATTATTTCCTTCACCACCTTCACCTGGTGCACTTTGGGTTGGGTAGACTTTTGTAACTTATATATTTGATGCATGCATGATTTTTATGTATATTTATGAAAAAAAATAAAAAATTTGCTTCTTAAAAAAAAAATTAATCTTATAAATACTACTTTCAGGGGACTAAATATATGTCTTTACACGCAATAGATATGCTCGATCATAATTTTAGGAGTAAAAAACACTACAAATATTAGAAATGATATCGATTACCATTTCAATTTTGAGATGGAGATTATGAACAATTTGGGGGATTTTCTTTATTGATGATCGAATAAATACAGGAAAAAAAAGAAGGAAAAATATTTGGGTGATGTATATTAACTTCTCGTGGTTATCTAATTTGTGAATTTATTTGAGTGGGCCCTTTAGGGTGGCTCTTCCTTCCAATGGCGGCGGAGGATATGGTGGAGGCCCCATTAATGAGAACCAATAGGGCCGCGCCAACAAATATTCGGTCTTTCACCACATAGCATTCTCCTTCCACCCACCCCTTCCCATACTCTTGTCTGCTGCTCATGCTGATGGCTCCACTCATCATTACCACCGCAATTCCAAAGCTGGCCCTGATCAAACCTGCGACTCCCAATTTGAATGCTTCACTTTCAGGCAGAAAGCAGAATCTGCCGTTCAATTTCAGCCATACATGACGCGAAGGAGGCGAGGGTGAGGGTTGCAACAATGGAAAACCCTATCACGAAGAAGCTGGATGGTGGCTTTTCCATGGCGGCCAGAAGATCGAAGAAGTGGGACTGAGTTTAAATCAAGTCATGGTATTTGAAAGGGAAAGGCTCTTCGAGTTTCTGCAGGGAAATGGCCCCACGCCATTGTTACAGGATGAAGATGCAAGTTTTTGCCAATATTTGGATTCCTCAAGCCGCTTCTTAGCAACAATGGAGGAGTACTGAGAGCCCCACATGCTACTATAGTCACCTTGGACTCAACCAAGCACACCTGTTTCACTCCTGAACCACACCCAAACTCGAACGCAATGCCTTTCGCTCTGTTGCGTTCGCTCCCGTCTTTCTTCTCCTTCCTGATATCAATGGCTTCGCAGCCGGGAAGTATCACGCCATTTCCCGACCTCACCAAGTCCACAAGCCATGTCTCTGCAGTGCCCTTCTTTCTCCCATCTTTGCAGCCTAGACAGCACCAGCCACAATAATGATCAGAAGTTGAATTTCTAGGAATATTGATAGCATGCTGACCAATTCACTGTTGAGCCTCCACCAACAGTAGAGCCTGCAAGTACAAGCACATTCATGTTATCAGTTGCTACTAACCCACTTGAAAGCACTCCAGCCACCACTCCGCCACCCGACCCAGACCCGACAACCACCGCATCGCACTTGATGATCATTGAAGGGCTGGAAGCTTTGATCATTGGGGATAGAAGAGTGACTGGAAATCCAAACTTTCTAAGTGCTTCTGCTGCTGCTGCTGCTGCTACTTGTTGGTTGTCCAGATGGACAATGCCTTTGAATAGAGGTCCGTAAAGCTCTTCTTCATCTTCCTCAACTTCTCTTGATGCTTCTAACTGCTTGGTTTTGGCTTTGAATTGGGGGTCCGCTCCCGGGTAGTCTATCGCTTGCCATGATATGTTGTTCGTTTTATCATCAACCTGATCCAACCACAAAATAGAAAGACCCATTTTTCTCATCGAGTCGGGTAGAGATCAAAGGTCTCGAAATATAGTTCAATATATCATAAAAAATACCCGACTAATTGATTCTCTCATTAGACCAAATGTAGCTAAAGTTAAGAAGTTGCTACAACTCTAACCCGGTT

Coding sequence (CDS)

ATGGCGACTGAATCTGCCTCCGAAGTTTCTGCTAGTCCCGTGGGATCATACATCGGGAGCACGATAAGTTTGATTACGAAATGTGAGATTCGTTACGAAGGCATTCTCTACCACCTCAACATTCAAGAGTGTACCATCGGCTTGGCGAATGTTAGATCTTATGGGACAGAAGGACGAAAGATCGATGGTCCACAGATCCTTCCGAGCGATGAGGTGTATGAGTATATTCTGTTTCGAGGCAGTGACATCAAGGATCTGCAACTCAAGTCCCCCTCATTTGCTGAAATGGACAAGCAGATTCATGATGGCTCTGTGATCCAGTCGAAGCATGCTGGGTTCTCAACCTCACCACTCTATCCTTCAGTTGGATGTGAAACATCGACGGTCTCAAATCAGAGCCAGGATTCTCTGGCTTTTAATAATGGACAGTATCCAAGCAAGTTGTCTTCACATCAATCTGTTGCTGCAGTCTGGCAAGAAATTGGAAATAACAAAGCTCAGATTACGGGTAAACCTATATTCCACCCAACATCAATTCTTTCCAGGCAGTCTGTTCTGAATACTGCACCTTCTATTTCGGGTTCGGGTCCATTGCTCACATTGCCTGCACCTTCATTAACTCCTTATCAATTATCACAGTCTGGGGCAGAGGTACTTTCCTCCACAAAGAAACTGTGTGTTGATGCAAGGAACTTGGGTGCTTCTAATTCTTCGATATCAATTGCTGCGGTTGAACATCAAACACCCTCGTTTCCATCTCTGAGAGAGATGCCTCCTCAACAGTTCACTGAAGAATTTGATTTTCAAGCCATGAACGAGAAGTTCAAGAAGGACGAGGAAGAGAGACATTGGGCGATACCTAGAGCTAAGCCTGCATATAACAAGGATGAATTCTTCGATACAATTTCCTGCAATTCTCTTGAACGTGGATCAAGGAATGGACACAGCCGTTTCTCTAGGCCAATGAAATTTGACTCCGAGACAAGCGGAGGCCTTCCACATATGGGCGGCAATGTTGGGTATGGCGTTAGACGCGGTGAGAATTTCTGGGGCTCAAATAACTTGGGACAGGGATACAATTAA

Homology

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BLAST of CmoCh01G014080 vs. Swiss-Prot
Match: DCP5_ARATH (Protein decapping 5 OS=Arabidopsis thaliana GN=DCP5 PE=1 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 9.3e-30
Identity = 81/165 (49.09%), Postives = 106/165 (64.24%), Query Frame = 1


Query: 1   MATESASEVSASPVGSYIGSTISLITKCEIRYEGILYHLNIQECTIGLANVRSYGTEGRK 60
           MA ++    S+S   SY+GS ISL +K EIRYEGILY++N  E +IGL NVRS+GTEGRK
Sbjct: 1   MAADNTGSKSSSAADSYVGSLISLTSKSEIRYEGILYNINTDESSIGLQNVRSFGTEGRK 60

Query: 61  IDGPQILPSDEVYEYILFRGSDIKDLQLK-SPSFAEMDKQI-HDGSVIQSKHAGFSTSPL 120
            DGPQ+ PSD+VYEYILFRG+DIKDLQ+K SP        I +D ++IQS +     SP+
Sbjct: 61  KDGPQVPPSDKVYEYILFRGTDIKDLQVKASPPVQPPASTINNDPAIIQSHY----PSPM 120

Query: 121 YPSVGCETSTVSNQSQDSLAFNNGQYPSKLSSHQSVAAVWQEIGN 164
            P+ G   ST S    D ++ +NGQ        Q+   ++Q  GN
Sbjct: 121 -PTSGSLPSTASGSLPD-ISSHNGQPGQHGMGFQNAMPLYQPGGN 159

[Close]

BLAST of CmoCh01G014080 vs. Swiss-Prot
Match: DCP5L_ARATH (Decapping 5-like protein OS=Arabidopsis thaliana GN=DCP5-L PE=2 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 1.9e-27
Identity = 82/192 (42.71%), Postives = 111/192 (57.81%), Query Frame = 1


Query: 16  SYIGSTISLITKCEIRYEGILYHLNIQECTIGLANVRSYGTEGRKIDGPQILPSDEVYEY 75
           ++IGS ISLI+K EIRYEGILYHLN+Q+ T+GL NVRS GTEGRK DGPQI P D+VY+Y
Sbjct: 32  TFIGSFISLISKYEIRYEGILYHLNVQDSTLGLKNVRSCGTEGRKKDGPQIPPCDKVYDY 91

Query: 76  ILFRGSDIKDLQLK-SPSFAEMDKQIHDGSVIQSKHAGFSTSPLYPSVGCETS-TVSNQS 135
           ILFRGSDIKDLQ+  SPS     +   +  V QS H+  + +   P  G ++   +   S
Sbjct: 92  ILFRGSDIKDLQVNPSPSAQSRQEIQSEQDVNQSPHSRPAMTMSSPISGYDSGYGLGRGS 151

Query: 136 QDSLAFNNGQYPSKLSSHQSVAAVWQEIGNNKAQITGKPIFHPTSILSRQSVLNTAPSIS 195
           Q          P  ++ H SV   +Q    N   +T  P+          S++++  S +
Sbjct: 152 QWINTPALSSKPVPVTQHSSVPLSFQPPSANAGSLTESPV----------SLIDSTQSNA 209

Query: 196 GSGPLLTLPAPS 206
           GS    ++P PS
Sbjct: 212 GS----SMPIPS 209

[Close]

BLAST of CmoCh01G014080 vs. Swiss-Prot
Match: LS14A_MOUSE (Protein LSM14 homolog A OS=Mus musculus GN=Lsm14a PE=1 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 1.1e-19
Identity = 56/107 (52.34%), Postives = 71/107 (66.36%), Query Frame = 1


Query: 17  YIGSTISLITKCEIRYEGILYHLNIQECTIGLANVRSYGTEGRKIDGPQILPSDEVYEYI 76
           YIGS ISLI+K EIRYEGILY ++ +  T+ LA VRS+GTE R  D P I P DEV+EYI
Sbjct: 7   YIGSKISLISKAEIRYEGILYTIDTENSTVALAKVRSFGTEDRPTDRP-IPPRDEVFEYI 66

Query: 77  LFRGSDIKDLQLKSPSFAEMDKQIHDGSVIQSKHAGFSTSPLYPSVG 124
           +FRGSDIKDL +  P   +      D +++QS     S+S  + SVG
Sbjct: 67  IFRGSDIKDLTVCEPPKPQCSLP-QDPAIVQSSLGSSSSS--FQSVG 109

[Close]

BLAST of CmoCh01G014080 vs. Swiss-Prot
Match: LS14A_BOVIN (Protein LSM14 homolog A OS=Bos taurus GN=LSM14A PE=2 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 1.1e-19
Identity = 58/107 (54.21%), Postives = 72/107 (67.29%), Query Frame = 1


Query: 17  YIGSTISLITKCEIRYEGILYHLNIQECTIGLANVRSYGTEGRKIDGPQILPSDEVYEYI 76
           YIGS ISLI+K EIRYEGILY ++ +  T+ LA VRS+GTE R  D P I P DEV+EYI
Sbjct: 7   YIGSKISLISKAEIRYEGILYTIDTENSTVALAKVRSFGTEDRPTDRP-IPPRDEVFEYI 66

Query: 77  LFRGSDIKDLQLKSPSFAEMDKQIHDGSVIQSKHAGFSTSPLYPSVG 124
           +FRGSDIKDL +  P   +      D +++QS   G STS  + SVG
Sbjct: 67  IFRGSDIKDLTVCEPPKPQCSLP-QDPAIVQSS-LGSSTSS-FQSVG 109

[Close]

BLAST of CmoCh01G014080 vs. Swiss-Prot
Match: LS14B_HUMAN (Protein LSM14 homolog B OS=Homo sapiens GN=LSM14B PE=1 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 1.1e-19
Identity = 54/114 (47.37%), Postives = 71/114 (62.28%), Query Frame = 1


Query: 9   VSASPVGSYIGSTISLITKCEIRYEGILYHLNIQECTIGLANVRSYGTEGRKIDGPQILP 68
           +S S    Y+GS ISLI+K +IRYEGILY ++    T+ LA VRS+GTE R  D P   P
Sbjct: 1   MSGSSGTPYLGSKISLISKAQIRYEGILYTIDTDNSTVALAKVRSFGTEDRPTDRP-APP 60

Query: 69  SDEVYEYILFRGSDIKDLQLKSPSFAEMDKQIHDGSVIQSKHAGFSTSPLYPSV 123
            +E+YEYI+FRGSDIKD+ +  P  A+      D +++QS     S SP  P V
Sbjct: 61  REEIYEYIIFRGSDIKDITVCEPPKAQHTLP-QDPAIVQSSLGSASASPFQPHV 112

[Close]

BLAST of CmoCh01G014080 vs. TrEMBL
Match: G7K419_MEDTR (Protein decapping-like protein, putative OS=Medicago truncatula GN=MTR_5g025630 PE=4 SV=2)

HSP 1 Score: 191.8 bits (486), Expect = 1.4e-45
Identity = 160/403 (39.70%), Postives = 210/403 (52.11%), Query Frame = 1


Query: 1   MATESASEVSAS--PVGSYIGSTISLITKCEIRYEGILYHLNIQECTIGLANVRSYGTEG 60
           MA +S+++ S+S  PV SYIG  ISLI+  +IRYEG+LY LN+Q+ TIGL NVR YGTEG
Sbjct: 1   MANQSSTKGSSSSNPVESYIGCFISLISNYDIRYEGVLYFLNVQDSTIGLNNVRCYGTEG 60

Query: 61  RKIDGPQILPSDEVYEYILFRGSDIKDLQLKSPSFAE-MDKQIHDGS-------VIQSKH 120
           R+ DG Q+ PSD+VYE ILFRGSDIKDLQ+KSPS +   ++QI           +IQ+K 
Sbjct: 61  RRKDGQQVPPSDKVYECILFRGSDIKDLQIKSPSTSGWAEEQISSDQAIMQIVLLIQAKP 120

Query: 121 AGFSTSPLYPSVGCETSTVSNQSQDSLAFNNGQYPSKLSSHQSVAAVWQEIGNNKAQITG 180
                +P+  SV   T                      S+  S  +  Q+I + + +ITG
Sbjct: 121 YLLGGTPMPYSVSVTTDA--------------------SNTPSFCSPLQDINSVEGRITG 180

Query: 181 KPIFHPTSILSRQSVLNTAPSISGS--GPLLTLPAPSLTPYQLSQSGAEVLSSTKKLCVD 240
           K   +P+ I  + SV N   SI  S  GP LT P   LT  + +     +L+  + L  +
Sbjct: 181 KIRPYPSPISPQYSVHNRGSSIVDSTLGPFLT-PQSLLTSDRFAHPREWLLA--QNLNPN 240

Query: 241 ARNLGASNSSISI--------AAVEHQTPSFPSLREMPPQQFTEEFDFQAMNEKFKKDEE 300
            +++G+   + S+        + +EH  P+     + P  QFTEEFDF AMNEKFKKDE 
Sbjct: 241 WKDMGSLPLTSSVPMPSPAFQSPLEH-LPTSVHKAQYPSPQFTEEFDFVAMNEKFKKDEV 300

Query: 301 ERHWA---------------------IPRAKPAYNKDEFFDTISCNSLERGSRNGHSRFS 360
               A                       + K AY KD+FFDTIS NS+ RGSRN   R S
Sbjct: 301 WNSIAKATTKIEGLEDIEFLNLGERECHKLKSAYKKDDFFDTISSNSMTRGSRN---RLS 360

[Close]

BLAST of CmoCh01G014080 vs. TrEMBL
Match: A0A061G7I8_THECC (Decapping 5-like, putative isoform 4 OS=Theobroma cacao GN=TCM_016705 PE=4 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 4.5e-39
Identity = 99/177 (55.93%), Postives = 127/177 (71.75%), Query Frame = 1


Query: 1   MATESASEVSASPVGSYIGSTISLITKCEIRYEGILYHLNIQECTIGLANVRSYGTEGRK 60
           MA+ES+S  S +   SYIG+ +SLI+K EIRYEG+LY+LN+Q+  IGL NVRSYGTEGRK
Sbjct: 1   MASESSSN-SKNVGDSYIGNFLSLISKYEIRYEGVLYYLNVQDSAIGLQNVRSYGTEGRK 60

Query: 61  IDGPQILPSDEVYEYILFRGSDIKDLQLKSPSFAEMDKQI-HDGSVIQSKHAGFSTSPLY 120
            DGPQ+ PSD+VYEYILFRGSDIKDLQ+KSP   ++D+QI +D ++IQS+ AG   SP +
Sbjct: 61  KDGPQVPPSDKVYEYILFRGSDIKDLQVKSPPPVQIDEQINNDPAIIQSQFAGVPLSP-F 120

Query: 121 P--SVGCETSTVSNQSQDSLAFNNGQYPSKLSSHQSVAAVWQEIGNNKAQITGKPIF 175
           P  SVG  T T S Q QD+ A  +  YPS L +HQ  + V+    +  AQ  G P+F
Sbjct: 121 PSVSVGGRTLTESTQWQDNPALASRVYPSALPTHQFSSQVYPSNYSLAAQNAGTPLF 175

[Close]

BLAST of CmoCh01G014080 vs. TrEMBL
Match: A0A061GEA8_THECC (Decapping 5-like, putative isoform 5 OS=Theobroma cacao GN=TCM_016705 PE=4 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 4.5e-39
Identity = 99/177 (55.93%), Postives = 127/177 (71.75%), Query Frame = 1


Query: 1   MATESASEVSASPVGSYIGSTISLITKCEIRYEGILYHLNIQECTIGLANVRSYGTEGRK 60
           MA+ES+S  S +   SYIG+ +SLI+K EIRYEG+LY+LN+Q+  IGL NVRSYGTEGRK
Sbjct: 1   MASESSSN-SKNVGDSYIGNFLSLISKYEIRYEGVLYYLNVQDSAIGLQNVRSYGTEGRK 60

Query: 61  IDGPQILPSDEVYEYILFRGSDIKDLQLKSPSFAEMDKQI-HDGSVIQSKHAGFSTSPLY 120
            DGPQ+ PSD+VYEYILFRGSDIKDLQ+KSP   ++D+QI +D ++IQS+ AG   SP +
Sbjct: 61  KDGPQVPPSDKVYEYILFRGSDIKDLQVKSPPPVQIDEQINNDPAIIQSQFAGVPLSP-F 120

Query: 121 P--SVGCETSTVSNQSQDSLAFNNGQYPSKLSSHQSVAAVWQEIGNNKAQITGKPIF 175
           P  SVG  T T S Q QD+ A  +  YPS L +HQ  + V+    +  AQ  G P+F
Sbjct: 121 PSVSVGGRTLTESTQWQDNPALASRVYPSALPTHQFSSQVYPSNYSLAAQNAGTPLF 175

[Close]

BLAST of CmoCh01G014080 vs. TrEMBL
Match: A0A061G718_THECC (Decapping 5-like, putative isoform 2 OS=Theobroma cacao GN=TCM_016705 PE=4 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 4.5e-39
Identity = 99/177 (55.93%), Postives = 127/177 (71.75%), Query Frame = 1


Query: 1   MATESASEVSASPVGSYIGSTISLITKCEIRYEGILYHLNIQECTIGLANVRSYGTEGRK 60
           MA+ES+S  S +   SYIG+ +SLI+K EIRYEG+LY+LN+Q+  IGL NVRSYGTEGRK
Sbjct: 1   MASESSSN-SKNVGDSYIGNFLSLISKYEIRYEGVLYYLNVQDSAIGLQNVRSYGTEGRK 60

Query: 61  IDGPQILPSDEVYEYILFRGSDIKDLQLKSPSFAEMDKQI-HDGSVIQSKHAGFSTSPLY 120
            DGPQ+ PSD+VYEYILFRGSDIKDLQ+KSP   ++D+QI +D ++IQS+ AG   SP +
Sbjct: 61  KDGPQVPPSDKVYEYILFRGSDIKDLQVKSPPPVQIDEQINNDPAIIQSQFAGVPLSP-F 120

Query: 121 P--SVGCETSTVSNQSQDSLAFNNGQYPSKLSSHQSVAAVWQEIGNNKAQITGKPIF 175
           P  SVG  T T S Q QD+ A  +  YPS L +HQ  + V+    +  AQ  G P+F
Sbjct: 121 PSVSVGGRTLTESTQWQDNPALASRVYPSALPTHQFSSQVYPSNYSLAAQNAGTPLF 175

[Close]

BLAST of CmoCh01G014080 vs. TrEMBL
Match: A0A061G690_THECC (Decapping 5-like, putative isoform 1 OS=Theobroma cacao GN=TCM_016705 PE=4 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 4.5e-39
Identity = 99/177 (55.93%), Postives = 127/177 (71.75%), Query Frame = 1


Query: 1   MATESASEVSASPVGSYIGSTISLITKCEIRYEGILYHLNIQECTIGLANVRSYGTEGRK 60
           MA+ES+S  S +   SYIG+ +SLI+K EIRYEG+LY+LN+Q+  IGL NVRSYGTEGRK
Sbjct: 1   MASESSSN-SKNVGDSYIGNFLSLISKYEIRYEGVLYYLNVQDSAIGLQNVRSYGTEGRK 60

Query: 61  IDGPQILPSDEVYEYILFRGSDIKDLQLKSPSFAEMDKQI-HDGSVIQSKHAGFSTSPLY 120
            DGPQ+ PSD+VYEYILFRGSDIKDLQ+KSP   ++D+QI +D ++IQS+ AG   SP +
Sbjct: 61  KDGPQVPPSDKVYEYILFRGSDIKDLQVKSPPPVQIDEQINNDPAIIQSQFAGVPLSP-F 120

Query: 121 P--SVGCETSTVSNQSQDSLAFNNGQYPSKLSSHQSVAAVWQEIGNNKAQITGKPIF 175
           P  SVG  T T S Q QD+ A  +  YPS L +HQ  + V+    +  AQ  G P+F
Sbjct: 121 PSVSVGGRTLTESTQWQDNPALASRVYPSALPTHQFSSQVYPSNYSLAAQNAGTPLF 175

[Close]

BLAST of CmoCh01G014080 vs. TAIR10
Match: AT1G26110.1 (AT1G26110.1 decapping 5)

HSP 1 Score: 132.5 bits (332), Expect = 5.2e-31
Identity = 81/165 (49.09%), Postives = 106/165 (64.24%), Query Frame = 1


Query: 1   MATESASEVSASPVGSYIGSTISLITKCEIRYEGILYHLNIQECTIGLANVRSYGTEGRK 60
           MA ++    S+S   SY+GS ISL +K EIRYEGILY++N  E +IGL NVRS+GTEGRK
Sbjct: 1   MAADNTGSKSSSAADSYVGSLISLTSKSEIRYEGILYNINTDESSIGLQNVRSFGTEGRK 60

Query: 61  IDGPQILPSDEVYEYILFRGSDIKDLQLK-SPSFAEMDKQI-HDGSVIQSKHAGFSTSPL 120
            DGPQ+ PSD+VYEYILFRG+DIKDLQ+K SP        I +D ++IQS +     SP+
Sbjct: 61  KDGPQVPPSDKVYEYILFRGTDIKDLQVKASPPVQPPASTINNDPAIIQSHY----PSPM 120

Query: 121 YPSVGCETSTVSNQSQDSLAFNNGQYPSKLSSHQSVAAVWQEIGN 164
            P+ G   ST S    D ++ +NGQ        Q+   ++Q  GN
Sbjct: 121 -PTSGSLPSTASGSLPD-ISSHNGQPGQHGMGFQNAMPLYQPGGN 159

[Close]

BLAST of CmoCh01G014080 vs. TAIR10
Match: AT5G45330.1 (AT5G45330.1 decapping 5-like)

HSP 1 Score: 124.8 bits (312), Expect = 1.1e-28
Identity = 82/192 (42.71%), Postives = 111/192 (57.81%), Query Frame = 1


Query: 16  SYIGSTISLITKCEIRYEGILYHLNIQECTIGLANVRSYGTEGRKIDGPQILPSDEVYEY 75
           ++IGS ISLI+K EIRYEGILYHLN+Q+ T+GL NVRS GTEGRK DGPQI P D+VY+Y
Sbjct: 32  TFIGSFISLISKYEIRYEGILYHLNVQDSTLGLKNVRSCGTEGRKKDGPQIPPCDKVYDY 91

Query: 76  ILFRGSDIKDLQLK-SPSFAEMDKQIHDGSVIQSKHAGFSTSPLYPSVGCETS-TVSNQS 135
           ILFRGSDIKDLQ+  SPS     +   +  V QS H+  + +   P  G ++   +   S
Sbjct: 92  ILFRGSDIKDLQVNPSPSAQSRQEIQSEQDVNQSPHSRPAMTMSSPISGYDSGYGLGRGS 151

Query: 136 QDSLAFNNGQYPSKLSSHQSVAAVWQEIGNNKAQITGKPIFHPTSILSRQSVLNTAPSIS 195
           Q          P  ++ H SV   +Q    N   +T  P+          S++++  S +
Sbjct: 152 QWINTPALSSKPVPVTQHSSVPLSFQPPSANAGSLTESPV----------SLIDSTQSNA 209

Query: 196 GSGPLLTLPAPS 206
           GS    ++P PS
Sbjct: 212 GS----SMPIPS 209

[Close]

BLAST of CmoCh01G014080 vs. TAIR10
Match: AT4G19360.1 (AT4G19360.1 SCD6 protein-related)

HSP 1 Score: 90.5 bits (223), Expect = 2.3e-18
Identity = 42/81 (51.85%), Postives = 59/81 (72.84%), Query Frame = 1


Query: 13  PVGSYIGSTISLITKCEIRYEGILYHLNIQECTIGLANVRSYGTEGRKIDGPQILPSDEV 72
           PV +YIGS ++LI   +IRYEGIL  LN+QE T+GL NV  YGTEGR  +G QI P  ++
Sbjct: 23  PVEAYIGSFVTLIANFDIRYEGILCFLNLQESTLGLQNVVCYGTEGRNQNGVQIPPDTKI 82

Query: 73  YEYILFRGSDIKDLQLKSPSF 94
             YILF G++IK++ ++ P++
Sbjct: 83  QNYILFNGNNIKEIIVQPPTW 103

[Close]

BLAST of CmoCh01G014080 vs. TAIR10
Match: AT4G19340.1 (AT4G19340.1 SCD6 protein-related)

HSP 1 Score: 57.4 bits (137), Expect = 2.1e-08
Identity = 34/96 (35.42%), Postives = 56/96 (58.33%), Query Frame = 1


Query: 3   TESASEVSASPVGSYIGSTISLITKCEIRYEGILYHLNIQECTIGLAN-VRSYGTEGRKI 62
           T S+S      V S IG  +++++  +IRYEG++  LN+Q+  +GL N VR YG E    
Sbjct: 5   TSSSSTPPEDLVTSMIGKFVAVLSNNDIRYEGVISLLNLQDSKLGLQNVVRVYGREVEND 64

Query: 63  DGPQILP-SDEVYEYILFRGSDIKDLQLKSPSFAEM 97
           +  ++     EV+ +++FRGSDIK L  +   F ++
Sbjct: 65  NEQRVFQVLKEVHSHMVFRGSDIKLLAAQETLFLKL 100

[Close]

BLAST of CmoCh01G014080 vs. TAIR10
Match: AT4G19260.1 (AT4G19260.1 Galactose oxidase/kelch repeat superfamily protein)

HSP 1 Score: 57.0 bits (136), Expect = 2.8e-08
Identity = 34/96 (35.42%), Postives = 56/96 (58.33%), Query Frame = 1


Query: 3   TESASEVSASPVGSYIGSTISLITKCEIRYEGILYHLNIQECTIGLAN-VRSYGTEGRKI 62
           T S+S      V S IG  +++++  +IRYEG++  LN+Q+  +GL N VR YG E    
Sbjct: 5   TSSSSTPPEDLVTSMIGKFVAVMSNNDIRYEGVISLLNLQDSKLGLQNVVRVYGREVEND 64

Query: 63  DGPQILP-SDEVYEYILFRGSDIKDLQLKSPSFAEM 97
           +  ++     EV+ +++FRGSDIK L  +   F ++
Sbjct: 65  NEQRVFQVLKEVHSHMVFRGSDIKLLAAQETLFLKL 100

[Close]

BLAST of CmoCh01G014080 vs. NCBI nr
Match: gi|922355860|ref|XP_003612493.2| (protein decapping-like protein, putative [Medicago truncatula])

HSP 1 Score: 191.8 bits (486), Expect = 2.1e-45
Identity = 160/403 (39.70%), Postives = 210/403 (52.11%), Query Frame = 1


Query: 1   MATESASEVSAS--PVGSYIGSTISLITKCEIRYEGILYHLNIQECTIGLANVRSYGTEG 60
           MA +S+++ S+S  PV SYIG  ISLI+  +IRYEG+LY LN+Q+ TIGL NVR YGTEG
Sbjct: 1   MANQSSTKGSSSSNPVESYIGCFISLISNYDIRYEGVLYFLNVQDSTIGLNNVRCYGTEG 60

Query: 61  RKIDGPQILPSDEVYEYILFRGSDIKDLQLKSPSFAE-MDKQIHDGS-------VIQSKH 120
           R+ DG Q+ PSD+VYE ILFRGSDIKDLQ+KSPS +   ++QI           +IQ+K 
Sbjct: 61  RRKDGQQVPPSDKVYECILFRGSDIKDLQIKSPSTSGWAEEQISSDQAIMQIVLLIQAKP 120

Query: 121 AGFSTSPLYPSVGCETSTVSNQSQDSLAFNNGQYPSKLSSHQSVAAVWQEIGNNKAQITG 180
                +P+  SV   T                      S+  S  +  Q+I + + +ITG
Sbjct: 121 YLLGGTPMPYSVSVTTDA--------------------SNTPSFCSPLQDINSVEGRITG 180

Query: 181 KPIFHPTSILSRQSVLNTAPSISGS--GPLLTLPAPSLTPYQLSQSGAEVLSSTKKLCVD 240
           K   +P+ I  + SV N   SI  S  GP LT P   LT  + +     +L+  + L  +
Sbjct: 181 KIRPYPSPISPQYSVHNRGSSIVDSTLGPFLT-PQSLLTSDRFAHPREWLLA--QNLNPN 240

Query: 241 ARNLGASNSSISI--------AAVEHQTPSFPSLREMPPQQFTEEFDFQAMNEKFKKDEE 300
            +++G+   + S+        + +EH  P+     + P  QFTEEFDF AMNEKFKKDE 
Sbjct: 241 WKDMGSLPLTSSVPMPSPAFQSPLEH-LPTSVHKAQYPSPQFTEEFDFVAMNEKFKKDEV 300

Query: 301 ERHWA---------------------IPRAKPAYNKDEFFDTISCNSLERGSRNGHSRFS 360
               A                       + K AY KD+FFDTIS NS+ RGSRN   R S
Sbjct: 301 WNSIAKATTKIEGLEDIEFLNLGERECHKLKSAYKKDDFFDTISSNSMTRGSRN---RLS 360

[Close]

BLAST of CmoCh01G014080 vs. NCBI nr
Match: gi|590680494|ref|XP_007040877.1| (Decapping 5-like, putative isoform 4 [Theobroma cacao])

HSP 1 Score: 170.2 bits (430), Expect = 6.4e-39
Identity = 99/177 (55.93%), Postives = 127/177 (71.75%), Query Frame = 1


Query: 1   MATESASEVSASPVGSYIGSTISLITKCEIRYEGILYHLNIQECTIGLANVRSYGTEGRK 60
           MA+ES+S  S +   SYIG+ +SLI+K EIRYEG+LY+LN+Q+  IGL NVRSYGTEGRK
Sbjct: 1   MASESSSN-SKNVGDSYIGNFLSLISKYEIRYEGVLYYLNVQDSAIGLQNVRSYGTEGRK 60

Query: 61  IDGPQILPSDEVYEYILFRGSDIKDLQLKSPSFAEMDKQI-HDGSVIQSKHAGFSTSPLY 120
            DGPQ+ PSD+VYEYILFRGSDIKDLQ+KSP   ++D+QI +D ++IQS+ AG   SP +
Sbjct: 61  KDGPQVPPSDKVYEYILFRGSDIKDLQVKSPPPVQIDEQINNDPAIIQSQFAGVPLSP-F 120

Query: 121 P--SVGCETSTVSNQSQDSLAFNNGQYPSKLSSHQSVAAVWQEIGNNKAQITGKPIF 175
           P  SVG  T T S Q QD+ A  +  YPS L +HQ  + V+    +  AQ  G P+F
Sbjct: 121 PSVSVGGRTLTESTQWQDNPALASRVYPSALPTHQFSSQVYPSNYSLAAQNAGTPLF 175

[Close]

BLAST of CmoCh01G014080 vs. NCBI nr
Match: gi|590680486|ref|XP_007040875.1| (Decapping 5-like, putative isoform 2 [Theobroma cacao])

HSP 1 Score: 170.2 bits (430), Expect = 6.4e-39
Identity = 99/177 (55.93%), Postives = 127/177 (71.75%), Query Frame = 1


Query: 1   MATESASEVSASPVGSYIGSTISLITKCEIRYEGILYHLNIQECTIGLANVRSYGTEGRK 60
           MA+ES+S  S +   SYIG+ +SLI+K EIRYEG+LY+LN+Q+  IGL NVRSYGTEGRK
Sbjct: 1   MASESSSN-SKNVGDSYIGNFLSLISKYEIRYEGVLYYLNVQDSAIGLQNVRSYGTEGRK 60

Query: 61  IDGPQILPSDEVYEYILFRGSDIKDLQLKSPSFAEMDKQI-HDGSVIQSKHAGFSTSPLY 120
            DGPQ+ PSD+VYEYILFRGSDIKDLQ+KSP   ++D+QI +D ++IQS+ AG   SP +
Sbjct: 61  KDGPQVPPSDKVYEYILFRGSDIKDLQVKSPPPVQIDEQINNDPAIIQSQFAGVPLSP-F 120

Query: 121 P--SVGCETSTVSNQSQDSLAFNNGQYPSKLSSHQSVAAVWQEIGNNKAQITGKPIF 175
           P  SVG  T T S Q QD+ A  +  YPS L +HQ  + V+    +  AQ  G P+F
Sbjct: 121 PSVSVGGRTLTESTQWQDNPALASRVYPSALPTHQFSSQVYPSNYSLAAQNAGTPLF 175

[Close]

BLAST of CmoCh01G014080 vs. NCBI nr
Match: gi|590680482|ref|XP_007040874.1| (Decapping 5-like, putative isoform 1 [Theobroma cacao])

HSP 1 Score: 170.2 bits (430), Expect = 6.4e-39
Identity = 99/177 (55.93%), Postives = 127/177 (71.75%), Query Frame = 1


Query: 1   MATESASEVSASPVGSYIGSTISLITKCEIRYEGILYHLNIQECTIGLANVRSYGTEGRK 60
           MA+ES+S  S +   SYIG+ +SLI+K EIRYEG+LY+LN+Q+  IGL NVRSYGTEGRK
Sbjct: 1   MASESSSN-SKNVGDSYIGNFLSLISKYEIRYEGVLYYLNVQDSAIGLQNVRSYGTEGRK 60

Query: 61  IDGPQILPSDEVYEYILFRGSDIKDLQLKSPSFAEMDKQI-HDGSVIQSKHAGFSTSPLY 120
            DGPQ+ PSD+VYEYILFRGSDIKDLQ+KSP   ++D+QI +D ++IQS+ AG   SP +
Sbjct: 61  KDGPQVPPSDKVYEYILFRGSDIKDLQVKSPPPVQIDEQINNDPAIIQSQFAGVPLSP-F 120

Query: 121 P--SVGCETSTVSNQSQDSLAFNNGQYPSKLSSHQSVAAVWQEIGNNKAQITGKPIF 175
           P  SVG  T T S Q QD+ A  +  YPS L +HQ  + V+    +  AQ  G P+F
Sbjct: 121 PSVSVGGRTLTESTQWQDNPALASRVYPSALPTHQFSSQVYPSNYSLAAQNAGTPLF 175

[Close]

BLAST of CmoCh01G014080 vs. NCBI nr
Match: gi|590680498|ref|XP_007040878.1| (Decapping 5-like, putative isoform 5 [Theobroma cacao])

HSP 1 Score: 170.2 bits (430), Expect = 6.4e-39
Identity = 99/177 (55.93%), Postives = 127/177 (71.75%), Query Frame = 1


Query: 1   MATESASEVSASPVGSYIGSTISLITKCEIRYEGILYHLNIQECTIGLANVRSYGTEGRK 60
           MA+ES+S  S +   SYIG+ +SLI+K EIRYEG+LY+LN+Q+  IGL NVRSYGTEGRK
Sbjct: 1   MASESSSN-SKNVGDSYIGNFLSLISKYEIRYEGVLYYLNVQDSAIGLQNVRSYGTEGRK 60

Query: 61  IDGPQILPSDEVYEYILFRGSDIKDLQLKSPSFAEMDKQI-HDGSVIQSKHAGFSTSPLY 120
            DGPQ+ PSD+VYEYILFRGSDIKDLQ+KSP   ++D+QI +D ++IQS+ AG   SP +
Sbjct: 61  KDGPQVPPSDKVYEYILFRGSDIKDLQVKSPPPVQIDEQINNDPAIIQSQFAGVPLSP-F 120

Query: 121 P--SVGCETSTVSNQSQDSLAFNNGQYPSKLSSHQSVAAVWQEIGNNKAQITGKPIF 175
           P  SVG  T T S Q QD+ A  +  YPS L +HQ  + V+    +  AQ  G P+F
Sbjct: 121 PSVSVGGRTLTESTQWQDNPALASRVYPSALPTHQFSSQVYPSNYSLAAQNAGTPLF 175

The following BLAST results are available for this feature:

BLAST of CmoCh01G014080 vs. Swiss-Prot


Match Name	E-value	Identity	Description
DCP5_ARATH	9.3e-30	49.09	Protein decapping 5 OS=Arabidopsis thaliana GN=DCP5 PE=1 SV=1	[more]
DCP5L_ARATH	1.9e-27	42.71	Decapping 5-like protein OS=Arabidopsis thaliana GN=DCP5-L PE=2 SV=1	[more]
LS14A_MOUSE	1.1e-19	52.34	Protein LSM14 homolog A OS=Mus musculus GN=Lsm14a PE=1 SV=1	[more]
LS14A_BOVIN	1.1e-19	54.21	Protein LSM14 homolog A OS=Bos taurus GN=LSM14A PE=2 SV=1	[more]
LS14B_HUMAN	1.1e-19	47.37	Protein LSM14 homolog B OS=Homo sapiens GN=LSM14B PE=1 SV=1	[more]

BLAST of CmoCh01G014080 vs. TrEMBL


Match Name	E-value	Identity	Description
G7K419_MEDTR	1.4e-45	39.70	Protein decapping-like protein, putative OS=Medicago truncatula GN=MTR_5g025630 ...	[more]
A0A061G7I8_THECC	4.5e-39	55.93	Decapping 5-like, putative isoform 4 OS=Theobroma cacao GN=TCM_016705 PE=4 SV=1	[more]
A0A061GEA8_THECC	4.5e-39	55.93	Decapping 5-like, putative isoform 5 OS=Theobroma cacao GN=TCM_016705 PE=4 SV=1	[more]
A0A061G718_THECC	4.5e-39	55.93	Decapping 5-like, putative isoform 2 OS=Theobroma cacao GN=TCM_016705 PE=4 SV=1	[more]
A0A061G690_THECC	4.5e-39	55.93	Decapping 5-like, putative isoform 1 OS=Theobroma cacao GN=TCM_016705 PE=4 SV=1	[more]

BLAST of CmoCh01G014080 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G26110.1	5.2e-31	49.09	decapping 5	[more]
AT5G45330.1	1.1e-28	42.71	decapping 5-like	[more]
AT4G19360.1	2.3e-18	51.85	SCD6 protein-related	[more]
AT4G19340.1	2.1e-08	35.42	SCD6 protein-related	[more]
AT4G19260.1	2.8e-08	35.42	Galactose oxidase/kelch repeat superfamily protein	[more]

BLAST of CmoCh01G014080 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|922355860\|ref\|XP_003612493.2\|	2.1e-45	39.70	protein decapping-like protein, putative [Medicago truncatula]	[more]
gi\|590680494\|ref\|XP_007040877.1\|	6.4e-39	55.93	Decapping 5-like, putative isoform 4 [Theobroma cacao]	[more]
gi\|590680486\|ref\|XP_007040875.1\|	6.4e-39	55.93	Decapping 5-like, putative isoform 2 [Theobroma cacao]	[more]
gi\|590680482\|ref\|XP_007040874.1\|	6.4e-39	55.93	Decapping 5-like, putative isoform 1 [Theobroma cacao]	[more]
gi\|590680498\|ref\|XP_007040878.1\|	6.4e-39	55.93	Decapping 5-like, putative isoform 5 [Theobroma cacao]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR010920	LSM_dom_sf
IPR019050	FDF_dom
IPR025609	Lsm14-like_N
IPR025761	FFD_box
IPR025762	DFDF

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh01G014080.1	CmoCh01G014080.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010920	LSM domain	unknown	SSF50182	Sm-like ribonucleoproteins	coord: 16..92 score: 1.44
IPR019050	FDF domain	SMART	SM01199	FDF_2	coord: 260..333 score: 6.6
IPR025609	Lsm14 N-terminal	PFAM	PF12701	LSM14	coord: 17..90 score: 8.3
IPR025609	Lsm14 N-terminal	SMART	SM01271	LSM14_2	coord: 11..111 score: 8.0
IPR025761	FFD box	PROFILE	PS51513	FFD	coord: 291..306 score: 1
IPR025762	DFDF domain	PROFILE	PS51512	DFDF	coord: 254..290 score: 9
None	No IPR available	PANTHER	PTHR13586	SCD6 PROTEIN-RELATED	coord: 9..360 score: 6.7
None	No IPR available	PANTHER	PTHR13586:SF3	DECAPPING 5-LIKE PROTEIN-RELATED	coord: 9..360 score: 6.7

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh01G014080	CmaCh01G013570	Cucurbita maxima (Rimu)	cmacmoB468
CmoCh01G014080	Cp4.1LG02g02940	Cucurbita pepo (Zucchini)	cmocpeB448
CmoCh01G014080	Carg00301	Silver-seed gourd	carcmoB0922

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh01G014080	Cucumber (Chinese Long) v3	cmocucB0549
CmoCh01G014080	Cucumber (Chinese Long) v3	cmocucB0558
CmoCh01G014080	Cucumber (Chinese Long) v3	cmocucB0560
CmoCh01G014080	Watermelon (97103) v2	cmowmbB437
CmoCh01G014080	Wax gourd	cmowgoB0615
CmoCh01G014080	Cucurbita moschata (Rifu)	cmocmoB013
CmoCh01G014080	Cucumber (Gy14) v1	cgycmoB0726
CmoCh01G014080	Cucurbita maxima (Rimu)	cmacmoB041
CmoCh01G014080	Wild cucumber (PI 183967)	cmocpiB463
CmoCh01G014080	Cucumber (Chinese Long) v2	cmocuB459
CmoCh01G014080	Cucumber (Chinese Long) v2	cmocuB469
CmoCh01G014080	Melon (DHL92) v3.5.1	cmomeB423
CmoCh01G014080	Watermelon (Charleston Gray)	cmowcgB391
CmoCh01G014080	Watermelon (97103) v1	cmowmB456
CmoCh01G014080	Cucurbita pepo (Zucchini)	cmocpeB461
CmoCh01G014080	Bottle gourd (USVL1VR-Ls)	cmolsiB424
CmoCh01G014080	Cucumber (Gy14) v2	cgybcmoB481
CmoCh01G014080	Melon (DHL92) v3.6.1	cmomedB487
CmoCh01G014080	Silver-seed gourd	carcmoB1400