CmoCh01G014010 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh01G014010
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	BnaC01g11770D protein
Location	Cmo_Chr01 : 11025502 .. 11025912 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTGTTTCCATCCAAGTTCTAGGCTTAAAAAGCCTTCAGAAGAAAGAAAAAAAGTGCCATAGGAGAGAGCTTTTAGAGAGAGAAAGAACTGGTCATTTCAGCACTTCCCAACATGGGCATCATGAGAGTGAGCAGCCTGGAGATGGCAAGGGAAGAAGAAGGGTGAAGAAGCAGGGACGAAGAAGAAAGACGACTCAGTTTGGAGCTGCTAGACAAGTTCTTCAATGGAACATGTGGTACTTTACCTCAACAATCAGCTATATTTTAAGGAAGGCCAAAGCCTTTTACAATGAGTGTTGCTGTGATGCTTATGAAGATGAGAGGATGAAGAGAGTTGAAGTGGCTATGGTTGATCCTTATTTCTCAATGCCTGTTTTTCCTTATACTACTATGGCTAATTGTATGTAA

mRNA sequence

ATGTCTGTTTCCATCCAAGTTCTAGGCTTAAAAAGCCTTCAGAAGAAAGAAAAAAAGTGCCATAGGAGAGAGCTTTTAGAGAGAGAAAGAACTGGTCATTTCAGCACTTCCCAACATGGGCATCATGAGAGTGAGCAGCCTGGAGATGGCAAGGGAAGAAGAAGGGTGAAGAAGCAGGGACGAAGAAGAAAGACGACTCAGTTTGGAGCTGCTAGACAAGTTCTTCAATGGAACATGTGGTACTTTACCTCAACAATCAGCTATATTTTAAGGAAGGCCAAAGCCTTTTACAATGAGTGTTGCTGTGATGCTTATGAAGATGAGAGGATGAAGAGAGTTGAAGTGGCTATGGTTGATCCTTATTTCTCAATGCCTGTTTTTCCTTATACTACTATGGCTAATTGTATGTAA

Coding sequence (CDS)

ATGTCTGTTTCCATCCAAGTTCTAGGCTTAAAAAGCCTTCAGAAGAAAGAAAAAAAGTGCCATAGGAGAGAGCTTTTAGAGAGAGAAAGAACTGGTCATTTCAGCACTTCCCAACATGGGCATCATGAGAGTGAGCAGCCTGGAGATGGCAAGGGAAGAAGAAGGGTGAAGAAGCAGGGACGAAGAAGAAAGACGACTCAGTTTGGAGCTGCTAGACAAGTTCTTCAATGGAACATGTGGTACTTTACCTCAACAATCAGCTATATTTTAAGGAAGGCCAAAGCCTTTTACAATGAGTGTTGCTGTGATGCTTATGAAGATGAGAGGATGAAGAGAGTTGAAGTGGCTATGGTTGATCCTTATTTCTCAATGCCTGTTTTTCCTTATACTACTATGGCTAATTGTATGTAA

Homology

[Close]

BLAST of CmoCh01G014010 vs. TrEMBL
Match: A0A0A0L609_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G669230 PE=4 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 6.6e-36
Identity = 86/136 (63.24%), Postives = 100/136 (73.53%), Query Frame = 1


Query: 1   MSVSIQVLGLKSLQKKEKKCHRRELLERERTGHFSTSQHGHHESEQPGDGKGRRRVKKQG 60
           MSVS Q+L L  L+KK KK  +RE L+RE  G++S       ++E+ G+ KGRRR K   
Sbjct: 1   MSVSTQLLELGRLEKKGKKRIKRESLKRENNGYYSYKDVS--DNEEHGESKGRRRRK--- 60

Query: 61  RRRKTTQFGAARQVLQWNMWYFTSTISYILRKAKAFYNECCCDAYEDERMKRVEVAMVDP 120
            RRK  QFG  R VL  N WYFTSTIS+ILRKAKAFYNECCCDA+EDERMK+ EV  +DP
Sbjct: 61  -RRKKGQFGTTRDVLHMNFWYFTSTISHILRKAKAFYNECCCDAFEDERMKKNEVISIDP 120

Query: 121 YFSMPVFPYTTMANCM 137
           YFSMPV PYTTMANCM
Sbjct: 121 YFSMPVLPYTTMANCM 130

[Close]

BLAST of CmoCh01G014010 vs. TrEMBL
Match: B9H054_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s10510g PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 2.4e-09
Identity = 40/88 (45.45%), Postives = 58/88 (65.91%), Query Frame = 1


Query: 48  GDGKGRRRVKKQGRRRKTTQFGAARQVLQW-NMWYFTSTISYILRKAKAFYNECCCDAY- 107
           GDGK   R  K  +R++    G AR++ ++ ++WY +S+ISYILRKA++FYNE CCD Y 
Sbjct: 61  GDGKEMTRRNKLQKRKRDR--GWARELPRYLDLWYMSSSISYILRKARSFYNEFCCDNYF 120

Query: 108 EDERMKRVEVAMVDPYFSMPVFPYTTMA 134
           +D  +   E+ +  PYFS PV P  T+A
Sbjct: 121 DDSSIMGHELVLAGPYFSFPVIPPPTIA 146

[Close]

BLAST of CmoCh01G014010 vs. TrEMBL
Match: V4T963_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10002850mg PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 7.6e-08
Identity = 39/98 (39.80%), Postives = 53/98 (54.08%), Query Frame = 1


Query: 31  TGHFSTSQHGHHESEQPGDGKGRRRVKKQGRRRKTTQFGAARQVLQWNMWYFTSTISYIL 90
           T H  + +  HH S+Q  D   +   KK   +RK   +   R  L    WY T++I Y L
Sbjct: 28  TSHQHSERWTHHNSDQINDDHVKG--KKMKMKRKPKHWAQERSRL--GFWYVTTSIRYTL 87

Query: 91  RKAKAFYNECCCDAYEDERMKRVEVAMVDPYFSMPVFP 129
           RKA+AFYNE C + Y+D      +V + DPYFS+PV P
Sbjct: 88  RKARAFYNEFCSEKYDDNPKVFKQVMIADPYFSIPVIP 121

[Close]

BLAST of CmoCh01G014010 vs. TrEMBL
Match: A0A059CJL2_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_D02579 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 8.4e-07
Identity = 47/136 (34.56%), Postives = 70/136 (51.47%), Query Frame = 1


Query: 1   MSVSIQVLGLKSLQKKEKKCHRRELLERERTGHFSTSQHGHHE-----SEQPGDGK-GRR 60
           M+  +  L      K    C + + ++R +  H S    GH       +E  GD   G +
Sbjct: 1   MATQLSTLAKLHGPKSLSSCGQNKPIKRSKVRHCSEKDAGHDHYRIECTELHGDTAFGEK 60

Query: 61  RVKKQGRRRKTTQFGAARQVLQWNMWYFTSTISYILRKAKAFYNECCCDAYEDERMKRVE 120
           + +   RR +        ++L   +WY  S+I YIL KAKAFYNE CCDA+ED  + + +
Sbjct: 61  KCQSWRRRGRDPP-----RLL--GLWYLGSSIRYILMKAKAFYNEFCCDAFEDSLVVKND 120

Query: 121 --VAMVDPYFSMPVFP 129
             V++VDPYFS+PV P
Sbjct: 121 GAVSLVDPYFSIPVTP 129

[Close]

BLAST of CmoCh01G014010 vs. TrEMBL
Match: A0A087GFE8_ARAAL (Uncharacterized protein OS=Arabis alpina GN=AALP_AA7G018600 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.9e-06
Identity = 37/89 (41.57%), Postives = 52/89 (58.43%), Query Frame = 1


Query: 43  ESEQPGDGKGRRRVKKQGRRRKTTQFGAAR-QVLQWNM-WYFTSTISYILRKAKAFYNEC 102
           E+ +   GK      K G+   TT++G  R +V + ++ WY   +ISYILRKA+AFYNE 
Sbjct: 40  ETSREEQGKVLNCNHKDGKSMSTTKYGDLRCEVARLSLLWYMKCSISYILRKARAFYNEF 99

Query: 103 CCDAYEDERMKRVEVAMVDPYFSMPVFPY 130
            CD Y +       +  VDPYFS+PV P+
Sbjct: 100 SCDTYAESS----TMVEVDPYFSVPVLPF 124

[Close]

BLAST of CmoCh01G014010 vs. TAIR10
Match: AT4G19430.1 (AT4G19430.1 unknown protein)

HSP 1 Score: 58.5 bits (140), Expect = 3.6e-09
Identity = 32/71 (45.07%), Postives = 47/71 (66.20%), Query Frame = 1


Query: 58  KQGRRRKTTQFGAARQ-VLQWNM-WYFTSTISYILRKAKAFYNECCCDAYEDERMKRVEV 117
           K G+    T++G  R+ V + ++ WY   +IS+ILRKA+AFYNE CCD Y +       +
Sbjct: 92  KDGKSITATKYGDLRRDVARLSLLWYMKCSISHILRKARAFYNEFCCDTYAESN----TM 151

Query: 118 AMVDPYFSMPV 127
           A+V+PYFS+PV
Sbjct: 152 AVVEPYFSIPV 158

[Close]

BLAST of CmoCh01G014010 vs. NCBI nr
Match: gi|700200413|gb|KGN55571.1| (hypothetical protein Csa_4G669230 [Cucumis sativus])

HSP 1 Score: 158.3 bits (399), Expect = 9.5e-36
Identity = 86/136 (63.24%), Postives = 100/136 (73.53%), Query Frame = 1


Query: 1   MSVSIQVLGLKSLQKKEKKCHRRELLERERTGHFSTSQHGHHESEQPGDGKGRRRVKKQG 60
           MSVS Q+L L  L+KK KK  +RE L+RE  G++S       ++E+ G+ KGRRR K   
Sbjct: 1   MSVSTQLLELGRLEKKGKKRIKRESLKRENNGYYSYKDVS--DNEEHGESKGRRRRK--- 60

Query: 61  RRRKTTQFGAARQVLQWNMWYFTSTISYILRKAKAFYNECCCDAYEDERMKRVEVAMVDP 120
            RRK  QFG  R VL  N WYFTSTIS+ILRKAKAFYNECCCDA+EDERMK+ EV  +DP
Sbjct: 61  -RRKKGQFGTTRDVLHMNFWYFTSTISHILRKAKAFYNECCCDAFEDERMKKNEVISIDP 120

Query: 121 YFSMPVFPYTTMANCM 137
           YFSMPV PYTTMANCM
Sbjct: 121 YFSMPVLPYTTMANCM 130

[Close]

BLAST of CmoCh01G014010 vs. NCBI nr
Match: gi|224071483|ref|XP_002303482.1| (hypothetical protein POPTR_0003s10510g [Populus trichocarpa])

HSP 1 Score: 70.1 bits (170), Expect = 3.4e-09
Identity = 40/88 (45.45%), Postives = 58/88 (65.91%), Query Frame = 1


Query: 48  GDGKGRRRVKKQGRRRKTTQFGAARQVLQW-NMWYFTSTISYILRKAKAFYNECCCDAY- 107
           GDGK   R  K  +R++    G AR++ ++ ++WY +S+ISYILRKA++FYNE CCD Y 
Sbjct: 61  GDGKEMTRRNKLQKRKRDR--GWARELPRYLDLWYMSSSISYILRKARSFYNEFCCDNYF 120

Query: 108 EDERMKRVEVAMVDPYFSMPVFPYTTMA 134
           +D  +   E+ +  PYFS PV P  T+A
Sbjct: 121 DDSSIMGHELVLAGPYFSFPVIPPPTIA 146

[Close]

BLAST of CmoCh01G014010 vs. NCBI nr
Match: gi|567880625|ref|XP_006432871.1| (hypothetical protein CICLE_v10002850mg [Citrus clementina])

HSP 1 Score: 65.1 bits (157), Expect = 1.1e-07
Identity = 39/98 (39.80%), Postives = 53/98 (54.08%), Query Frame = 1


Query: 31  TGHFSTSQHGHHESEQPGDGKGRRRVKKQGRRRKTTQFGAARQVLQWNMWYFTSTISYIL 90
           T H  + +  HH S+Q  D   +   KK   +RK   +   R  L    WY T++I Y L
Sbjct: 28  TSHQHSERWTHHNSDQINDDHVKG--KKMKMKRKPKHWAQERSRL--GFWYVTTSIRYTL 87

Query: 91  RKAKAFYNECCCDAYEDERMKRVEVAMVDPYFSMPVFP 129
           RKA+AFYNE C + Y+D      +V + DPYFS+PV P
Sbjct: 88  RKARAFYNEFCSEKYDDNPKVFKQVMIADPYFSIPVIP 121

[Close]

BLAST of CmoCh01G014010 vs. NCBI nr
Match: gi|702333160|ref|XP_010054918.1| (PREDICTED: uncharacterized protein LOC104443287 [Eucalyptus grandis])

HSP 1 Score: 61.6 bits (148), Expect = 1.2e-06
Identity = 47/136 (34.56%), Postives = 70/136 (51.47%), Query Frame = 1


Query: 1   MSVSIQVLGLKSLQKKEKKCHRRELLERERTGHFSTSQHGHHE-----SEQPGDGK-GRR 60
           M+  +  L      K    C + + ++R +  H S    GH       +E  GD   G +
Sbjct: 1   MATQLSTLAKLHGPKSLSSCGQNKPIKRSKVRHCSEKDAGHDHYRIECTELHGDTAFGEK 60

Query: 61  RVKKQGRRRKTTQFGAARQVLQWNMWYFTSTISYILRKAKAFYNECCCDAYEDERMKRVE 120
           + +   RR +        ++L   +WY  S+I YIL KAKAFYNE CCDA+ED  + + +
Sbjct: 61  KCQSWRRRGRDPP-----RLL--GLWYLGSSIRYILMKAKAFYNEFCCDAFEDSLVVKND 120

Query: 121 --VAMVDPYFSMPVFP 129
             V++VDPYFS+PV P
Sbjct: 121 GAVSLVDPYFSIPVTP 129

[Close]

BLAST of CmoCh01G014010 vs. NCBI nr
Match: gi|727554227|ref|XP_010449356.1| (PREDICTED: uncharacterized protein LOC104731625 [Camelina sativa])

HSP 1 Score: 60.5 bits (145), Expect = 2.7e-06
Identity = 39/89 (43.82%), Postives = 53/89 (59.55%), Query Frame = 1


Query: 43  ESEQPGDGKGRRRVKKQGRR---RKTTQFG-AARQVLQWNM-WYFTSTISYILRKAKAFY 102
           E+ Q   GK      K G+    R  T++G  +R V + ++ WY   +ISYILRKA+AFY
Sbjct: 81  ETNQQEHGKVSNSNCKDGKSITARSATKYGDLSRDVARLSLLWYMKCSISYILRKARAFY 140

Query: 103 NECCCDAYEDERMKRVEVAMVDPYFSMPV 127
           NE CCD Y +      +V +VDPYFS+PV
Sbjct: 141 NEFCCDTYVESSS---DVVVVDPYFSIPV 166

The following BLAST results are available for this feature:

BLAST of CmoCh01G014010 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh01G014010 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L609_CUCSA	6.6e-36	63.24	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G669230 PE=4 SV=1	[more]
B9H054_POPTR	2.4e-09	45.45	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s10510g PE=4 SV=1	[more]
V4T963_9ROSI	7.6e-08	39.80	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10002850mg PE=4 SV=1	[more]
A0A059CJL2_EUCGR	8.4e-07	34.56	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_D02579 PE=4 SV=1	[more]
A0A087GFE8_ARAAL	1.9e-06	41.57	Uncharacterized protein OS=Arabis alpina GN=AALP_AA7G018600 PE=4 SV=1	[more]

BLAST of CmoCh01G014010 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G19430.1	3.6e-09	45.07	unknown protein	[more]

BLAST of CmoCh01G014010 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700200413\|gb\|KGN55571.1\|	9.5e-36	63.24	hypothetical protein Csa_4G669230 [Cucumis sativus]	[more]
gi\|224071483\|ref\|XP_002303482.1\|	3.4e-09	45.45	hypothetical protein POPTR_0003s10510g [Populus trichocarpa]	[more]
gi\|567880625\|ref\|XP_006432871.1\|	1.1e-07	39.80	hypothetical protein CICLE_v10002850mg [Citrus clementina]	[more]
gi\|702333160\|ref\|XP_010054918.1\|	1.2e-06	34.56	PREDICTED: uncharacterized protein LOC104443287 [Eucalyptus grandis]	[more]
gi\|727554227\|ref\|XP_010449356.1\|	2.7e-06	43.82	PREDICTED: uncharacterized protein LOC104731625 [Camelina sativa]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh01G014010.1	CmoCh01G014010.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh01G014010	CmaCh01G013450	Cucurbita maxima (Rimu)	cmacmoB468
CmoCh01G014010	Cla023211	Watermelon (97103) v1	cmowmB456
CmoCh01G014010	Csa4G669230	Cucumber (Chinese Long) v2	cmocuB469
CmoCh01G014010	MELO3C010540	Melon (DHL92) v3.5.1	cmomeB423
CmoCh01G014010	ClCG11G016220	Watermelon (Charleston Gray)	cmowcgB391
CmoCh01G014010	Lsi04G018590	Bottle gourd (USVL1VR-Ls)	cmolsiB424
CmoCh01G014010	Cp4.1LG02g02830	Cucurbita pepo (Zucchini)	cmocpeB448
CmoCh01G014010	MELO3C010540.2	Melon (DHL92) v3.6.1	cmomedB487
CmoCh01G014010	CsaV3_4G037920	Cucumber (Chinese Long) v3	cmocucB0558
CmoCh01G014010	Cla97C11G222170	Watermelon (97103) v2	cmowmbB437
CmoCh01G014010	Bhi09G002350	Wax gourd	cmowgoB0612

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh01G014010	Cucumber (Gy14) v1	cgycmoB0726
CmoCh01G014010	Cucurbita maxima (Rimu)	cmacmoB041
CmoCh01G014010	Wild cucumber (PI 183967)	cmocpiB473
CmoCh01G014010	Cucurbita pepo (Zucchini)	cmocpeB461
CmoCh01G014010	Silver-seed gourd	carcmoB0922
CmoCh01G014010	Silver-seed gourd	carcmoB1400
CmoCh01G014010	Cucumber (Chinese Long) v3	cmocucB0560
CmoCh01G014010	Cucurbita moschata (Rifu)	cmocmoB013