CmoCh01G013870 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh01G013870
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Unknown protein
Location	Cmo_Chr01 : 10948589 .. 10949787 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCAAACAAACTTAAAACGTAAATTATTTTCTAATATAATTTTTATTTTCTGAAGATGAATTCCGCTCAGCCTGCAGGTGATCGATCCCTTTCATATTATATATTTTTTTATTTTAATGTATAATTTTATTTTTTATTTTTTTTGGTTTGTGTAGAAGTTTATCCTCCACCCTCCACCGCGCCACCCAGTTATGCAGCTCCGCCGCCGGCGGGGTATCCGGTAAGATACGGCGGAGACGTCTCTCCACCTGCTCCTGTTCCTGCTCCGGCTGTGACCAAGTCTAGAGGCATGGCCGAGGGCTGTTTGGAAGGCTGGTAATAAATAAATACTATTTTTATTGCATATTTTAATTAAATTAATATAAATAACAAATTTATGAATTGAAAATAATATAAATTTATTGATTTATTTATCCCACTTTTAAAAATATATATTAAAATTGAGTTATAAATATTAATTTAATGTTTGAAAATAGATTATTAACCTGACTAAATTAATAAAAATATTTTGAAATGACAAAAACATTTATAAACTTTTAAACGTTTAAATAATATTTTTAAATTATAAAAAAAAACTAAAAAATATTCTTAAATTTAGGAAGAAATTCAAAAATATTCATTAGTTTTAAATATAATTAGTTAATATTTTATTTAAAAAATATTATTACTCAAAATATTTTTTTAAAACTTTCATTAATACTTTTAATATTTTTTAAAACTTTTATAATACATTTTTAAAAGAAAATTTTAATAAATATTTTAAAAATACTAATAAATTTTTAACTGTAACATTATCTTTAAAATTAGATAGATATTTTTTAAATATATTATTAAGGAAAAAAATATTTCTGAATTTTTTTAAGAACTTGAAGGGTATAAATGGAATATTTTTTAAACAACTATCAATAAAAAAAACTAACGATAACGGTATTTTTAGATGAAATGGGGTATTTTTTTTTTATTAATTTAACCTATAAATATTTTACTTTTATTAAAAATAAATTTAAATAAATGACTTAAACAACTGGAAAGAACTTAATTTAAAATTAATATTGAATAATATATATATAATTTTTTTTAAAAATAAAAAATGAAATATTTTGGAATGCAGTTGTGCGGGGTTGTGCTGTTGCTGTGCATTGGAAACATGCTTCTAGTCACGTGAAGGAATCAAAGATGCGATGGCTCTCAAGTCCCAAC

mRNA sequence

TCAAACAAACTTAAAACGTAAATTATTTTCTAATATAATTTTTATTTTCTGAAGATGAATTCCGCTCAGCCTGCAGAAGTTTATCCTCCACCCTCCACCGCGCCACCCAGTTATGCAGCTCCGCCGCCGGCGGGGTATCCGGTAAGATACGGCGGAGACGTCTCTCCACCTGCTCCTGTTCCTGCTCCGGCTGTGACCAAGTCTAGAGGCATGGCCGAGGGCTGTTTGGAAGGCTGTTGTGCGGGGTTGTGCTGTTGCTGTGCATTGGAAACATGCTTCTAGTCACGTGAAGGAATCAAAGATGCGATGGCTCTCAAGTCCCAAC

Coding sequence (CDS)

ATGAATTCCGCTCAGCCTGCAGAAGTTTATCCTCCACCCTCCACCGCGCCACCCAGTTATGCAGCTCCGCCGCCGGCGGGGTATCCGGTAAGATACGGCGGAGACGTCTCTCCACCTGCTCCTGTTCCTGCTCCGGCTGTGACCAAGTCTAGAGGCATGGCCGAGGGCTGTTTGGAAGGCTGTTGTGCGGGGTTGTGCTGTTGCTGTGCATTGGAAACATGCTTCTAG

Homology

[Close]

BLAST of CmoCh01G013870 vs. TrEMBL
Match: A0A0A0L4C6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G618410 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 2.5e-13
Identity = 50/77 (64.94%), Postives = 55/77 (71.43%), Query Frame = 1


Query: 1  MNSAQPAEV-YPPPS-TAPPSYAAPPPAGYPVRYGGDVSPPAPVPAPAVTKSRGMAEGCL 60
          M+SAQPA V YPPPS T P SY+APPPAGYP R GGD S     P PA TKSRG  +G  
Sbjct: 1  MSSAQPAGVNYPPPSSTVPTSYSAPPPAGYPTREGGDFS----TPVPAETKSRG--DGFW 60

Query: 61 EGCCAGLCCCCALETCF 76
          +GCCA LCCCC L+ CF
Sbjct: 61 KGCCAALCCCCVLDACF 71

[Close]

BLAST of CmoCh01G013870 vs. TrEMBL
Match: A0A022RV61_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a017484mg PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 5.5e-08
Identity = 38/73 (52.05%), Postives = 48/73 (65.75%), Query Frame = 1


Query: 8  EVYPPPSTAPPS-----YAAPPPAGYPVRYGGDVSPPAPVPAPAVTKSRGMAEGCLEGCC 67
          + YPPP+TA P+     Y APPPAGYP++ G D    AP   P  T+S+G  +G L+GCC
Sbjct: 4  QAYPPPATAYPAEPQGGYMAPPPAGYPMKDGHDQQGQAP---PVTTQSKG--DGFLKGCC 63

Query: 68 AGLCCCCALETCF 76
          A LCCCC L+ CF
Sbjct: 64 AALCCCCVLDACF 71

[Close]

BLAST of CmoCh01G013870 vs. TrEMBL
Match: A0A022RS01_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a017484mg PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 1.2e-07
Identity = 38/71 (53.52%), Postives = 47/71 (66.20%), Query Frame = 1


Query: 10 YPPPSTAPPS-----YAAPPPAGYPVRYGGDVSPPAPVPAPAVTKSRGMAEGCLEGCCAG 69
          YPPP+TA P+     Y APPPAGYP++ G D    AP   P  T+S+G  +G L+GCCA 
Sbjct: 7  YPPPATAYPAEPQGGYMAPPPAGYPMKDGHDQQGQAP---PVTTQSKG--DGFLKGCCAA 66

Query: 70 LCCCCALETCF 76
          LCCCC L+ CF
Sbjct: 67 LCCCCVLDACF 72

[Close]

BLAST of CmoCh01G013870 vs. TrEMBL
Match: D6CH20_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_03s0017g01410 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 1.2e-07
Identity = 44/78 (56.41%), Postives = 50/78 (64.10%), Query Frame = 1


Query: 2  NSAQPAEVYPPP-STAPPS---YAAPPPAGYPVRYGGDVSPPAPVPAPAVTKSRGMAEGC 61
          +S Q  EVYPPP STA PS   Y APPPAGYP++     +P    P P  TKSRG  EG 
Sbjct: 3  HSHQAPEVYPPPPSTAYPSSGPYVAPPPAGYPMKD----APNPQNPPPVETKSRG--EGF 62

Query: 62 LEGCCAGLCCCCALETCF 76
           +GCCA LCCCC L+ CF
Sbjct: 63 WKGCCAALCCCCVLDACF 74

[Close]

BLAST of CmoCh01G013870 vs. TrEMBL
Match: B9RG84_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1452060 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 1.2e-07
Identity = 34/70 (48.57%), Postives = 42/70 (60.00%), Query Frame = 1


Query: 6  PAEVYPPPSTAPPSYAAPPPAGYPVRYGGDVSPPAPVPAPAVTKSRGMAEGCLEGCCAGL 65
          P+++YPPP      Y APPP GYP++ G    P    P P+ TK RG   GC  G CAG+
Sbjct: 23 PSQLYPPPQAQQGPYVAPPPVGYPMKSGVGYIPQNQQPPPSETKQRG---GCCRGFCAGM 82

Query: 66 CCCCALETCF 76
          CCCC L+ CF
Sbjct: 83 CCCCLLDACF 89

[Close]

BLAST of CmoCh01G013870 vs. TAIR10
Match: AT3G22240.1 (AT3G22240.1 unknown protein)

HSP 1 Score: 48.9 bits (115), Expect = 1.6e-06
Identity = 31/67 (46.27%), Postives = 38/67 (56.72%), Query Frame = 1


Query: 9  VYPPPSTAPPSYAAPPPAGYPVRYGGDVSPPAPVPAPAVTKSRGMAEGCLEGCCAGLCCC 68
          V  P  T+   Y +PPP GYP R      PPA   A   TKS+G  +G  +GCCA +CCC
Sbjct: 11 VEKPSQTSSGPYTSPPPIGYPTRDAMVGDPPA---AAVETKSKG--DGFWKGCCAAICCC 70

Query: 69 CALETCF 76
          C L+ CF
Sbjct: 71 CVLDACF 72

[Close]

BLAST of CmoCh01G013870 vs. TAIR10
Match: AT3G22235.1 (AT3G22235.1 BEST Arabidopsis thaliana protein match is: pathogen and circadian controlled 1 (TAIR:AT3G22231.1))

HSP 1 Score: 46.6 bits (109), Expect = 7.8e-06
Identity = 30/67 (44.78%), Postives = 36/67 (53.73%), Query Frame = 1


Query: 9  VYPPPSTAPPSYAAPPPAGYPVRYGGDVSPPAPVPAPAVTKSRGMAEGCLEGCCAGLCCC 68
          V  P  T+   Y +PPP GYP R      PPA   A   T S+G+     EGCCA +CCC
Sbjct: 11 VQKPSETSSGPYTSPPPIGYPTRDAVVGDPPA---AAVETNSKGVNP---EGCCAAICCC 70

Query: 69 CALETCF 76
          C L+ CF
Sbjct: 71 CVLDACF 71

[Close]

BLAST of CmoCh01G013870 vs. NCBI nr
Match: gi|659129418|ref|XP_008464677.1| (PREDICTED: CYSTM1 family protein B [Cucumis melo])

HSP 1 Score: 84.3 bits (207), Expect = 9.6e-14
Identity = 52/77 (67.53%), Postives = 57/77 (74.03%), Query Frame = 1


Query: 1  MNSAQPAEV-YPPPS-TAPPSYAAPPPAGYPVRYGGDVSPPAPVPAPAVTKSRGMAEGCL 60
          M+SAQPA V YPPPS T P SY+APPPAGYP R GGD S P PVPA   TKSRG  +G  
Sbjct: 1  MSSAQPAGVNYPPPSSTVPTSYSAPPPAGYPTRDGGDFSQPNPVPAE--TKSRG--DGFW 60

Query: 61 EGCCAGLCCCCALETCF 76
          +GCCA LCCCC L+ CF
Sbjct: 61 KGCCAALCCCCVLDACF 73

[Close]

BLAST of CmoCh01G013870 vs. NCBI nr
Match: gi|700199818|gb|KGN54976.1| (hypothetical protein Csa_4G618410 [Cucumis sativus])

HSP 1 Score: 82.4 bits (202), Expect = 3.7e-13
Identity = 50/77 (64.94%), Postives = 55/77 (71.43%), Query Frame = 1


Query: 1  MNSAQPAEV-YPPPS-TAPPSYAAPPPAGYPVRYGGDVSPPAPVPAPAVTKSRGMAEGCL 60
          M+SAQPA V YPPPS T P SY+APPPAGYP R GGD S     P PA TKSRG  +G  
Sbjct: 1  MSSAQPAGVNYPPPSSTVPTSYSAPPPAGYPTREGGDFS----TPVPAETKSRG--DGFW 60

Query: 61 EGCCAGLCCCCALETCF 76
          +GCCA LCCCC L+ CF
Sbjct: 61 KGCCAALCCCCVLDACF 71

[Close]

BLAST of CmoCh01G013870 vs. NCBI nr
Match: gi|672139593|ref|XP_008793583.1| (PREDICTED: CYSTM1 family protein A [Phoenix dactylifera])

HSP 1 Score: 72.4 bits (176), Expect = 3.8e-10
Identity = 41/71 (57.75%), Postives = 50/71 (70.42%), Query Frame = 1


Query: 6  PAEVYPPPSTA-PPSYAAPPPAGYPVRYGGDVSPPAPVPAPAVTKSRGMAEGCLEGCCAG 65
          PA  YPPP  A PP+YAAPPPA YP++ GG+     P PAPA T++RG  +G  +GCCA 
Sbjct: 17 PANAYPPPGQAYPPAYAAPPPASYPMKEGGE----NPQPAPAQTQNRG--DGFWKGCCAA 76

Query: 66 LCCCCALETCF 76
          LCCCC L+ CF
Sbjct: 77 LCCCCVLDMCF 81

[Close]

BLAST of CmoCh01G013870 vs. NCBI nr
Match: gi|743855841|ref|XP_010941635.1| (PREDICTED: cysteine-rich and transmembrane domain-containing protein A [Elaeis guineensis])

HSP 1 Score: 68.9 bits (167), Expect = 4.2e-09
Identity = 41/71 (57.75%), Postives = 48/71 (67.61%), Query Frame = 1


Query: 6  PAEVYPPPSTA-PPSYAAPPPAGYPVRYGGDVSPPAPVPAPAVTKSRGMAEGCLEGCCAG 65
          PA  YPPP  A PP+YAAPPPAGYP++ G       P PAPA T+ RG  +G  +GCCA 
Sbjct: 17 PANAYPPPGQAYPPAYAAPPPAGYPMKEG----VANPQPAPAQTQDRG--DGFWKGCCAA 76

Query: 66 LCCCCALETCF 76
          LCCCC L+ CF
Sbjct: 77 LCCCCVLDMCF 81

[Close]

BLAST of CmoCh01G013870 vs. NCBI nr
Match: gi|743760423|ref|XP_010936784.1| (PREDICTED: cysteine-rich and transmembrane domain-containing protein B-like [Elaeis guineensis])

HSP 1 Score: 68.6 bits (166), Expect = 5.5e-09
Identity = 41/71 (57.75%), Postives = 47/71 (66.20%), Query Frame = 1


Query: 6  PAEVYPPPSTA-PPSYAAPPPAGYPVRYGGDVSPPAPVPAPAVTKSRGMAEGCLEGCCAG 65
          P + YPPP+   P +YAAPPP GYPV+   D +   P  AP  TKSRG  EG  EGCCA 
Sbjct: 17 PGQAYPPPAEGYPANYAAPPPVGYPVK---DEAAAYPSQAPVETKSRG--EGFWEGCCAA 76

Query: 66 LCCCCALETCF 76
          LCCCC L+TCF
Sbjct: 77 LCCCCVLDTCF 82

The following BLAST results are available for this feature:

BLAST of CmoCh01G013870 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh01G013870 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L4C6_CUCSA	2.5e-13	64.94	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G618410 PE=4 SV=1	[more]
A0A022RV61_ERYGU	5.5e-08	52.05	Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a017484mg PE=4 SV=1	[more]
A0A022RS01_ERYGU	1.2e-07	53.52	Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a017484mg PE=4 SV=1	[more]
D6CH20_VITVI	1.2e-07	56.41	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_03s0017g01410 PE=4 SV=...	[more]
B9RG84_RICCO	1.2e-07	48.57	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1452060 PE=4 SV=1	[more]

BLAST of CmoCh01G013870 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G22240.1	1.6e-06	46.27	unknown protein	[more]
AT3G22235.1	7.8e-06	44.78	BEST Arabidopsis thaliana protein match is: pathogen and circadian c...	[more]

BLAST of CmoCh01G013870 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659129418\|ref\|XP_008464677.1\|	9.6e-14	67.53	PREDICTED: CYSTM1 family protein B [Cucumis melo]	[more]
gi\|700199818\|gb\|KGN54976.1\|	3.7e-13	64.94	hypothetical protein Csa_4G618410 [Cucumis sativus]	[more]
gi\|672139593\|ref\|XP_008793583.1\|	3.8e-10	57.75	PREDICTED: CYSTM1 family protein A [Phoenix dactylifera]	[more]
gi\|743855841\|ref\|XP_010941635.1\|	4.2e-09	57.75	PREDICTED: cysteine-rich and transmembrane domain-containing protein A [Elaeis g...	[more]
gi\|743760423\|ref\|XP_010936784.1\|	5.5e-09	57.75	PREDICTED: cysteine-rich and transmembrane domain-containing protein B-like [Ela...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR028144	CYSTM_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh01G013870.1	CmoCh01G013870.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR028144	Cysteine-rich transmembrane CYSTM domain	PFAM	PF12734	CYSTM	coord: 23..75 score: 8.
None	No IPR available	PANTHER	PTHR31568	FAMILY NOT NAMED	coord: 2..75 score: 7.8
None	No IPR available	PANTHER	PTHR31568:SF17	EXPRESSED PROTEIN	coord: 2..75 score: 7.8

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh01G013870	CsaV3_4G032300	Cucumber (Chinese Long) v3	cmocucB0543

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh01G013870	Watermelon (97103) v2	cmowmbB430
CmoCh01G013870	Wax gourd	cmowgoB0620
CmoCh01G013870	Cucurbita moschata (Rifu)	cmocmoB013
CmoCh01G013870	Cucurbita moschata (Rifu)	cmocmoB022
CmoCh01G013870	Cucumber (Gy14) v1	cgycmoB0074
CmoCh01G013870	Cucurbita maxima (Rimu)	cmacmoB051
CmoCh01G013870	Cucurbita maxima (Rimu)	cmacmoB041
CmoCh01G013870	Cucurbita maxima (Rimu)	cmacmoB468
CmoCh01G013870	Wild cucumber (PI 183967)	cmocpiB459
CmoCh01G013870	Wild cucumber (PI 183967)	cmocpiB473
CmoCh01G013870	Cucumber (Chinese Long) v2	cmocuB455
CmoCh01G013870	Melon (DHL92) v3.5.1	cmomeB423
CmoCh01G013870	Melon (DHL92) v3.5.1	cmomeB439
CmoCh01G013870	Melon (DHL92) v3.5.1	cmomeB430
CmoCh01G013870	Watermelon (Charleston Gray)	cmowcgB387
CmoCh01G013870	Watermelon (97103) v1	cmowmB453
CmoCh01G013870	Cucurbita pepo (Zucchini)	cmocpeB448
CmoCh01G013870	Cucurbita pepo (Zucchini)	cmocpeB461
CmoCh01G013870	Cucurbita pepo (Zucchini)	cmocpeB469
CmoCh01G013870	Bottle gourd (USVL1VR-Ls)	cmolsiB415
CmoCh01G013870	Cucumber (Gy14) v2	cgybcmoB477
CmoCh01G013870	Melon (DHL92) v3.6.1	cmomedB487
CmoCh01G013870	Melon (DHL92) v3.6.1	cmomedB494
CmoCh01G013870	Melon (DHL92) v3.6.1	cmomedB503
CmoCh01G013870	Silver-seed gourd	carcmoB0881
CmoCh01G013870	Silver-seed gourd	carcmoB1400
CmoCh01G013870	Cucumber (Chinese Long) v3	cmocucB0560