CmoCh01G013550 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh01G013550
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionUnknown protein
LocationCmo_Chr01 : 10702035 .. 10704216 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAAAAAAATTGTTTTCGAAAAGACTAAAATAACCTTCTGACTCGGTCGACCTCCACTAGTGAGGTTTAGGGTTCTGATCGCCACTATAAATGAGAAAGGTGCCTACAAGTTTATCGTTTCAGTTCATACAATTCATCGACGAAGAGAGGATAAAGATCGACCTGCCACTGTTTTTCTGAGACAAAGTTCGAGTCTGTTCTCCATCGACAATGAGAGCCAAGGTTCATCTTCCTAATTTTCTTCATCTTTCGTTATCACTGTTTCCTATTCTTTCATTTTTCTCATTTTTTTTTTGTGTATGCTTTGAGGATTTAGTTGTTTTTGCCTCGATTGGAGTCGGAAAGTGTGATCGAAGTTTTGTCAGGTTTGATAACTGGATGCATTTTCCTAGCTGTGTTCGTGATTCTCACTCTTTGCGAGTCGGCAACTAATGTTCTTAGGGTTTATAACTTTGGAAACGGGATTAGGGTTTTTTGCTATTATCCTTGGATGTACTTTCCTATTTGTGTTTGTTCCTTCCATGATCCTGAATCTTAAGTTACTTGTCATTGTTCGCATACCGGCTGGGATTTCTTACTGTTTTGTTTTTTTTTTCTGTTTTTTTTATTTGATCAAACGTTATCGTTAGTTCTATTAATTTTCAGTGTAAACCTCTCGGTAGAATCATAGGGGTATGTTATCCACTCGAGGCCGGAATAGTGTTGTAGGTTTAGTATTCCTGACCAAGATTAAGATGGTAACGACCCTGACCCAAGCTCACTGCTAGCAGACAGATATTGTGTTCTTTTGAGCTTTGGCTTCCCCTCAGCTTTAAAACTAGCATGTTAGGAGAAAGTTTCCACAACCTTATAAAATGTTTTGTTCTCCTCCCCAACCAACATGGGACATCACAATCAACCCCCCTTCAAGGCCCAACGTCCTCGCTGGAACTCGTTCCTTTCTCCAATCGATGTGGGACCCCGACTGTGGCACATCACCTCGTGTCTACCCCCTTTGGGAATAGTGAGAAGGCTGGCACATCGTCAGGTGTCTGGCTCTGATACCATTTGTAACGACTCTAGCCCAAGCCCACCGCTAGCAGATATTGTCTCTTTGGGCTTCCCCTTAAGGCTTTAAAACTTGTATGCTAGGGGAAGGTTTCCACAATCTTATAAGGTGTTTTGTTCTCCTCCCCCAACCAATGTGGGACATCACAAAGATTGTGAAGTAAAAAGGTATTAGATTATCTAAATAGTATTTAGAAGTCTTTGAAGCGACGAAGTTGTGTAGCATTTCAGTGTTGAGAGCTTACTTTTCAAGCACCGTTCGATAATCTTTTTCATAAGTTCATCAGTTTTTGATAATTACCTCACAATGATATTTATCTTTCTTGAATTCATAGTCAAATTCCAAAAACAAAAACAAGCTTTTAAAAACTATTTTTTCACTCGTGGGTGGGGTGGGAGTAGTGCATTCAAACGCCAAAAACTTTTGGGCCCCCTAGTTTTTTGCTTAACATTTTGTTTACTTTGTTGGGATTGATTTATATACATTTTTTTTCCTTTTGCTTTCAACTCGAGGCTTATATATTGGAATAACATTCATTGTTATCACCAACCATTGCGTGGAAATTGAGGTTTATAGTTTTTTGGTTCTGAATTCTTCTTTGATTCTTTGCATTCTTCTTTTTCTTGTCTCGAGTCTAAAAGAATTCTTACTTATGTCTTTTTGGGGGTGGTTCTGAATGCCAGTGGAAGAAGAAGCGTATGAGGAGGCTTAAGAGAAAGCGCCGAAAGATGAGACAGAGGTCGAAGTAGTTGGCAGATATCTGGAAAATGATCAAGCTTTCTCCTGAGACTGTTTATGGTCTCCATTGCTGTCGAGCATGAACTGCTTGAAGTCGTGGAGGTTGTAGTAGTGTTCTTACGAAGATAGTTTTGCACCATTTCCTGTGGTTTTTATTACTTTGGATAAACTTCTATAACTTGACTTGTTTTCCGTTTAAGATGTGTGTTATGACATATATTATGCATGCATTTAATGCTTTTCTTGAACTCGGTTTCAGAAATTTTCAATAGTTAAGCTTAATTTGGCTTGGTATCTGCTGAATATTTTACCTGCGGACATAGGAGGGATTCCTCAGTTAGAAAGATCCAGCTAGCTTACTCTTAAAATGTTATTTTGCTCAGTCTGATGGGTTGA

mRNA sequence

AAAAAAAAATTGTTTTCGAAAAGACTAAAATAACCTTCTGACTCGGTCGACCTCCACTAGTGAGGTTTAGGGTTCTGATCGCCACTATAAATGAGAAAGGTGCCTACAAGTTTATCGTTTCAGTTCATACAATTCATCGACGAAGAGAGGATAAAGATCGACCTGCCACTGTTTTTCTGAGACAAAGTTCGAGTCTGTTCTCCATCGACAATGAGAGCCAAGTTGTTTTTGCCTCGATTGGAGTCGGAAAGTGTGATCGAAGTTTTGTCAGGTTTGATAACTGGATGCATTTTCCTAGCTGTGTTCGTGATTCTCACTCTTTGCGAGTCGGCAACTAATGTTCTTAGGGTTTATAACTTTGGAAACGGGATTAGGTGTAAACCTCTCGGTAGAATCATAGGGTGGAAGAAGAAGCGTATGAGGAGGCTTAAGAGAAAGCGCCGAAAGATGAGACAGAGGTCGAATCTGATGGGTTGA

Coding sequence (CDS)

ATGAGAGCCAAGTTGTTTTTGCCTCGATTGGAGTCGGAAAGTGTGATCGAAGTTTTGTCAGGTTTGATAACTGGATGCATTTTCCTAGCTGTGTTCGTGATTCTCACTCTTTGCGAGTCGGCAACTAATGTTCTTAGGGTTTATAACTTTGGAAACGGGATTAGGTGTAAACCTCTCGGTAGAATCATAGGGTGGAAGAAGAAGCGTATGAGGAGGCTTAAGAGAAAGCGCCGAAAGATGAGACAGAGGTCGAATCTGATGGGTTGA
Homology
The following BLAST results are available for this feature:
BLAST of CmoCh01G013550 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh01G013550 vs. TrEMBL
Match NameE-valueIdentityDescription
BLAST of CmoCh01G013550 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmoCh01G013550 vs. NCBI nr
Match NameE-valueIdentityDescription
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR007836Ribosomal_L41
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh01G013550.1CmoCh01G013550.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007836Ribosomal protein L41PFAMPF05162Ribosomal_L41coord: 65..84
score: 3.

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh01G013550CmaCh01G013000Cucurbita maxima (Rimu)cmacmoB468
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh01G013550Cucurbita pepo (Zucchini)cmocpeB448
CmoCh01G013550Cucurbita pepo (Zucchini)cmocpeB461
CmoCh01G013550Cucurbita pepo (Zucchini)cmocpeB469
CmoCh01G013550Bottle gourd (USVL1VR-Ls)cmolsiB415
CmoCh01G013550Cucumber (Gy14) v2cgybcmoB477
CmoCh01G013550Melon (DHL92) v3.6.1cmomedB503
CmoCh01G013550Silver-seed gourdcarcmoB0430
CmoCh01G013550Silver-seed gourdcarcmoB1401
CmoCh01G013550Cucumber (Chinese Long) v3cmocucB0543
CmoCh01G013550Watermelon (97103) v2cmowmbB430
CmoCh01G013550Wax gourdcmowgoB0620
CmoCh01G013550Cucurbita moschata (Rifu)cmocmoB013
CmoCh01G013550Cucurbita moschata (Rifu)cmocmoB022
CmoCh01G013550Cucumber (Gy14) v1cgycmoB0074
CmoCh01G013550Cucurbita maxima (Rimu)cmacmoB051
CmoCh01G013550Cucurbita maxima (Rimu)cmacmoB041
CmoCh01G013550Wild cucumber (PI 183967)cmocpiB459
CmoCh01G013550Cucumber (Chinese Long) v2cmocuB455
CmoCh01G013550Melon (DHL92) v3.5.1cmomeB439
CmoCh01G013550Watermelon (Charleston Gray)cmowcgB387
CmoCh01G013550Watermelon (97103) v1cmowmB453