CmoCh01G010540 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh01G010540
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionSequence-specific DNA binding transcription factors
LocationCmo_Chr01 : 8375871 .. 8376908 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTCCTGGGGGGGTTTCTTATGGAGGTGGTGACTGGCAAGGATCTATGGGGGTTCCTTATCAACACCCACAATATCATGATAGTAGTCGATATCAATCTCCGGTTCGTGGCAGCTTTCCATTGACAATGGGAAGCTTGCAACAGAGGGATCATTGGATTGGACTTGGCGATTATGATAACAGGGAGAGGGGCAATGATATGACAAGCGATGAAGATGAGGAGGGGATCTATGTTCATAATGATGCTCGTAACGAGAAGAATGGATCGCAATGGCAGCGTGTGAAGTGGACGAACAAGATGGTGAAGCTCTTGATTACTGTTTTATCCTATATGGGAGAGGATTCTGGTTCTGGATGTGGAAGCTTAGGGACAAGGAGACTTGTAGTGTTACAAAAGAAGGGGAAGTGGAAATCGGTTTCGAAGGTAATGGGCGAGCGAGGTTATCATGTTTCGCCCCAGCAATGTGAGGATAAATTTAATGATCTCAACAAAAGGTATAAGAGACTGAATGATATGCTCGGTAGGGGGACGTCCTGCGAAGCTGTCGAGAACCCTGCGGTTTTGGACGAGATAGATTATTTGAAAGCAAAGGAAAAGGATGATGTTAGGAAGATTCTAAACTCCAAGCATTTGTTCTATGAGGAGATGTGTTCTTATCATAATGGCAATAGACTGCATTTGCCTCATGATCCAGAATTGCTTCATTCTTTACAGTTGGTTCTCGGAAATAGAATTGATAGTTCTCGAGTTGCTCGATTTGTAACGAATCAAGTTGTAGCTGAAACTGATAGAATTTGTCAGTTACAACAGCTACGGATCGAGTCGCATTGTATTGAGTTAGAAGAGAAACGTGTTCGAATCGAAATAGGGAGATTGGAATTGGAGAACGAACGTATGAAGTGGGAGCGATTTAAGAAGAAACGAGAGCGGGAATTAGAAAAATTGAAGTTGGAAAATGAGAGGATGAGGGTCGAGAATGAACTCATAGCATCACAACTGAAGAAAAGGAGATGCTCTCATCTTCACAGGATTTGA

mRNA sequence

ATGATTCCTGGGGGGGTTTCTTATGGAGGTGGTGACTGGCAAGGATCTATGGGGGTTCCTTATCAACACCCACAATATCATGATAGTAGTCGATATCAATCTCCGGTTCGTGGCAGCTTTCCATTGACAATGGGAAGCTTGCAACAGAGGGATCATTGGATTGGACTTGGCGATTATGATAACAGGGAGAGGGGCAATGATATGACAAGCGATGAAGATGAGGAGGGGATCTATGTTCATAATGATGCTCGTAACGAGAAGAATGGATCGCAATGGCAGCGTGTGAAGTGGACGAACAAGATGGTGAAGCTCTTGATTACTGTTTTATCCTATATGGGAGAGGATTCTGGTTCTGGATGTGGAAGCTTAGGGACAAGGAGACTTGTAGTGTTACAAAAGAAGGGGAAGTGGAAATCGGTTTCGAAGGTAATGGGCGAGCGAGGTTATCATGTTTCGCCCCAGCAATGTGAGGATAAATTTAATGATCTCAACAAAAGGTATAAGAGACTGAATGATATGCTCGGTAGGGGGACGTCCTGCGAAGCTGTCGAGAACCCTGCGGTTTTGGACGAGATAGATTATTTGAAAGCAAAGGAAAAGGATGATGTTAGGAAGATTCTAAACTCCAAGCATTTGTTCTATGAGGAGATGTGTTCTTATCATAATGGCAATAGACTGCATTTGCCTCATGATCCAGAATTGCTTCATTCTTTACAGTTGGTTCTCGGAAATAGAATTGATAGTTCTCGAGTTGCTCGATTTGTAACGAATCAAGTTGTAGCTGAAACTGATAGAATTTGTCAGTTACAACAGCTACGGATCGAGTCGCATTGTATTGAGTTAGAAGAGAAACGTGTTCGAATCGAAATAGGGAGATTGGAATTGGAGAACGAACGTATGAAGTGGGAGCGATTTAAGAAGAAACGAGAGCGGGAATTAGAAAAATTGAAGTTGGAAAATGAGAGGATGAGGGTCGAGAATGAACTCATAGCATCACAACTGAAGAAAAGGAGATGCTCTCATCTTCACAGGATTTGA

Coding sequence (CDS)

ATGATTCCTGGGGGGGTTTCTTATGGAGGTGGTGACTGGCAAGGATCTATGGGGGTTCCTTATCAACACCCACAATATCATGATAGTAGTCGATATCAATCTCCGGTTCGTGGCAGCTTTCCATTGACAATGGGAAGCTTGCAACAGAGGGATCATTGGATTGGACTTGGCGATTATGATAACAGGGAGAGGGGCAATGATATGACAAGCGATGAAGATGAGGAGGGGATCTATGTTCATAATGATGCTCGTAACGAGAAGAATGGATCGCAATGGCAGCGTGTGAAGTGGACGAACAAGATGGTGAAGCTCTTGATTACTGTTTTATCCTATATGGGAGAGGATTCTGGTTCTGGATGTGGAAGCTTAGGGACAAGGAGACTTGTAGTGTTACAAAAGAAGGGGAAGTGGAAATCGGTTTCGAAGGTAATGGGCGAGCGAGGTTATCATGTTTCGCCCCAGCAATGTGAGGATAAATTTAATGATCTCAACAAAAGGTATAAGAGACTGAATGATATGCTCGGTAGGGGGACGTCCTGCGAAGCTGTCGAGAACCCTGCGGTTTTGGACGAGATAGATTATTTGAAAGCAAAGGAAAAGGATGATGTTAGGAAGATTCTAAACTCCAAGCATTTGTTCTATGAGGAGATGTGTTCTTATCATAATGGCAATAGACTGCATTTGCCTCATGATCCAGAATTGCTTCATTCTTTACAGTTGGTTCTCGGAAATAGAATTGATAGTTCTCGAGTTGCTCGATTTGTAACGAATCAAGTTGTAGCTGAAACTGATAGAATTTGTCAGTTACAACAGCTACGGATCGAGTCGCATTGTATTGAGTTAGAAGAGAAACGTGTTCGAATCGAAATAGGGAGATTGGAATTGGAGAACGAACGTATGAAGTGGGAGCGATTTAAGAAGAAACGAGAGCGGGAATTAGAAAAATTGAAGTTGGAAAATGAGAGGATGAGGGTCGAGAATGAACTCATAGCATCACAACTGAAGAAAAGGAGATGCTCTCATCTTCACAGGATTTGA
Homology
[Close]
BLAST of CmoCh01G010540 vs. TrEMBL
Match: A0A061FHC2_THECC (Sequence-specific DNA binding transcription factors OS=Theobroma cacao GN=TCM_035562 PE=4 SV=1)

HSP 1 Score: 323.9 bits (829), Expect = 2.3e-85
Identity = 170/263 (64.64%), Postives = 192/263 (73.00%), Query Frame = 1 

Query: 1   MIPGGVSYGGGDWQGSMGVPY--QHP----QYHDSSRYQSP-----VRGSFPLTMGSLQQ 60
           MI GG S+GG D QGSM V +  QHP    Q+H S+  Q       +   FPLTMG++Q 
Sbjct: 10  MISGGGSFGGLDVQGSMRVHHHAQHPHNIHQHHHSNPRQGASIHPSIHEGFPLTMGTMQN 69

Query: 61  RDHWIGLGDYDNRERGNDMTSDEDE-----EGIYVHNDARNEKNGSQWQRVKWTNKMVKL 120
            D  I + DY+  ER     SDEDE     EG+  HND    K GS WQRVKWT+KMV+L
Sbjct: 70  CDQTIAMTDYNKGERRKSSVSDEDEPSFTEEGVDGHNDGTKGKKGSPWQRVKWTDKMVRL 129

Query: 121 LITVLSYMGEDSGSGCGSLGTRRLVVLQKKGKWKSVSKVMGERGYHVSPQQCEDKFNDLN 180
           LIT +SY+GED+   CG    R+  VLQKKGKWKSVSKVM ERGYHVSPQQCEDKFNDLN
Sbjct: 130 LITAVSYIGEDAAGDCGGGMRRKFAVLQKKGKWKSVSKVMAERGYHVSPQQCEDKFNDLN 189

Query: 181 KRYKRLNDMLGRGTSCEAVENPAVLDEIDYLKAKEKDDVRKILNSKHLFYEEMCSYHNGN 240
           KRYK+LNDMLGRGTSC+ VENPA+LD IDYL  KEKDDVRKIL+SKHLFYEEMCSYHNGN
Sbjct: 190 KRYKKLNDMLGRGTSCQVVENPALLDVIDYLTEKEKDDVRKILSSKHLFYEEMCSYHNGN 249

Query: 241 RLHLPHDPELLHSLQLVLGNRID 248
           RLHLPHDP+L  SLQL L +R D
Sbjct: 250 RLHLPHDPQLQRSLQLALRSRDD 272

[Close]
BLAST of CmoCh01G010540 vs. TrEMBL
Match: A0A0D2RHC7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G079200 PE=4 SV=1)

HSP 1 Score: 323.6 bits (828), Expect = 3.0e-85
Identity = 165/266 (62.03%), Postives = 187/266 (70.30%), Query Frame = 1 

Query: 1   MIPGGVSYGGGDWQGSMGV-----------PYQHPQYHDSSRYQSPVRGSFPLTMGSLQQ 60
           MIPGG S+GG D QGSM V            + HP     +   + +   FPL MG++Q 
Sbjct: 10  MIPGGGSFGGLDLQGSMRVHNHAQNPHSIHQHHHPNPRQGASLHASIHEDFPLKMGNIQN 69

Query: 61  RDHWIGLGDYDNRERGNDMTSDEDE-----EGIYVHNDARNEKNGSQWQRVKWTNKMVKL 120
            D  I L DY+  ERG    SDEDE     EGI  HND    K GS WQRVKWT+KMV+L
Sbjct: 70  SDQIISLMDYNKGERGKSSVSDEDEPSFTEEGIDGHNDGSKGKKGSPWQRVKWTDKMVRL 129

Query: 121 LITVLSYMGEDSGSGCGSLGTRRLVVLQKKGKWKSVSKVMGERGYHVSPQQCEDKFNDLN 180
           LIT +SY+GED+  GCG    R+  V+QKKGKWKSVSKVM ER YHVSPQQCEDKFNDLN
Sbjct: 130 LITAVSYIGEDAAGGCGGGMRRKFAVIQKKGKWKSVSKVMAERSYHVSPQQCEDKFNDLN 189

Query: 181 KRYKRLNDMLGRGTSCEAVENPAVLDEIDYLKAKEKDDVRKILNSKHLFYEEMCSYHNGN 240
           KRYK+LNDMLGRGTSC+ VENPA+LD IDYL  KEKDDVRKIL+SKHLFYEEMCSYHNGN
Sbjct: 190 KRYKKLNDMLGRGTSCQVVENPALLDVIDYLTEKEKDDVRKILSSKHLFYEEMCSYHNGN 249

Query: 241 RLHLPHDPELLHSLQLVLGNRIDSSR 251
           RLHLPHDP+L  SLQL    + D  +
Sbjct: 250 RLHLPHDPQLQRSLQLAFRIKDDQEK 275

[Close]
BLAST of CmoCh01G010540 vs. TrEMBL
Match: V4V6N5_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10001142mg PE=4 SV=1)

HSP 1 Score: 322.0 bits (824), Expect = 8.8e-85
Identity = 165/264 (62.50%), Postives = 192/264 (72.73%), Query Frame = 1 

Query: 1   MIPGGVSYGGGDWQGSMGVPYQ-------HPQYHDSSRYQSP-----VRGSFPLTMGSLQ 60
           MIPGG S+GG D QGSM V +Q       HP +H  +  Q P     +   FPLT+G++Q
Sbjct: 10  MIPGGASFGGIDLQGSMRVHHQAQHPHAMHPHHHTINPRQGPSVHPSIHEGFPLTIGTMQ 69

Query: 61  QRDHWIGLGDYDNRERGNDMTSDED-----EEGIYVHNDARNEKNGSQWQRVKWTNKMVK 120
             D  I + DY+  ERG +  SD+D     EEG   HNDA   K GS WQRVKW +KMVK
Sbjct: 70  SSDQTISMTDYNKGERGKNSFSDDDDPSLTEEGGEGHNDAGKGKKGSPWQRVKWADKMVK 129

Query: 121 LLITVLSYMGEDSGSGCGSLGTRRLVVLQKKGKWKSVSKVMGERGYHVSPQQCEDKFNDL 180
           LLIT +SY+GED+ S CG    R+  VLQKKGKWK++SKVM ERG+HVSPQQCEDKFNDL
Sbjct: 130 LLITAVSYVGEDTSSDCGGGARRKFAVLQKKGKWKAISKVMAERGFHVSPQQCEDKFNDL 189

Query: 181 NKRYKRLNDMLGRGTSCEAVENPAVLDEIDYLKAKEKDDVRKILNSKHLFYEEMCSYHNG 240
           NKRYK+LNDMLGRGTSC+ VENP++LD ID+L  KEKDDVRKIL+SKHLFYEEMCSYHNG
Sbjct: 190 NKRYKKLNDMLGRGTSCQVVENPSLLDVIDFLTEKEKDDVRKILSSKHLFYEEMCSYHNG 249

Query: 241 NRLHLPHDPELLHSLQLVLGNRID 248
           NRLHLPHD  L  SLQL L +R D
Sbjct: 250 NRLHLPHDLPLQRSLQLALRSRDD 273

[Close]
BLAST of CmoCh01G010540 vs. TrEMBL
Match: A0A067GYJ6_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g013261mg PE=4 SV=1)

HSP 1 Score: 322.0 bits (824), Expect = 8.8e-85
Identity = 165/264 (62.50%), Postives = 192/264 (72.73%), Query Frame = 1 

Query: 1   MIPGGVSYGGGDWQGSMGVPYQ-------HPQYHDSSRYQSP-----VRGSFPLTMGSLQ 60
           MIPGG S+GG D QGSM V +Q       HP +H  +  Q P     +   FPLT+G++Q
Sbjct: 10  MIPGGASFGGIDLQGSMRVHHQAQHPHAMHPHHHTINPRQGPSVHPSIHEGFPLTIGTMQ 69

Query: 61  QRDHWIGLGDYDNRERGNDMTSDED-----EEGIYVHNDARNEKNGSQWQRVKWTNKMVK 120
             D  I + DY+  ERG +  SD+D     EEG   HNDA   K GS WQRVKW +KMVK
Sbjct: 70  SSDQTISMTDYNKGERGKNSFSDDDDPSLTEEGGEGHNDAGKGKKGSPWQRVKWADKMVK 129

Query: 121 LLITVLSYMGEDSGSGCGSLGTRRLVVLQKKGKWKSVSKVMGERGYHVSPQQCEDKFNDL 180
           LLIT +SY+GED+ S CG    R+  VLQKKGKWK++SKVM ERG+HVSPQQCEDKFNDL
Sbjct: 130 LLITAVSYVGEDTSSDCGGGARRKFAVLQKKGKWKAISKVMAERGFHVSPQQCEDKFNDL 189

Query: 181 NKRYKRLNDMLGRGTSCEAVENPAVLDEIDYLKAKEKDDVRKILNSKHLFYEEMCSYHNG 240
           NKRYK+LNDMLGRGTSC+ VENP++LD ID+L  KEKDDVRKIL+SKHLFYEEMCSYHNG
Sbjct: 190 NKRYKKLNDMLGRGTSCQVVENPSLLDVIDFLTEKEKDDVRKILSSKHLFYEEMCSYHNG 249

Query: 241 NRLHLPHDPELLHSLQLVLGNRID 248
           NRLHLPHD  L  SLQL L +R D
Sbjct: 250 NRLHLPHDLPLQRSLQLALRSRDD 273

[Close]
BLAST of CmoCh01G010540 vs. TrEMBL
Match: B9GTJ4_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s06930g PE=4 SV=2)

HSP 1 Score: 318.2 bits (814), Expect = 1.3e-83
Identity = 199/410 (48.54%), Postives = 243/410 (59.27%), Query Frame = 1 

Query: 1   MIPGGVSYGGGDWQGSMGVPYQ-----------HPQYHDSSRYQSPVRGSFPLTMGSLQQ 60
           MIPGG  +GG D QGSM V +Q           HP +   S   + V   FPLTMG +  
Sbjct: 10  MIPGGAPFGGLDLQGSMRVHHQAQHPHTMHHHQHPLHRQGSSTLTSVEEGFPLTMGFMHN 69

Query: 61  RDHWIGLGDYDNRERGNDMTSDEDE-----EGIYVHNDARNEKNGSQWQRVKWTNKMVKL 120
            D  I + DY+  +RG +  SDEDE     EG   HNDA   K G+ WQRVKWT+KMV+L
Sbjct: 70  SDQNISMNDYNKGDRGKNSVSDEDEPSYTEEGADGHNDAITGKKGTPWQRVKWTDKMVRL 129

Query: 121 LITVLSYMGEDSGSGCGSLGTRRLVVLQKKGKWKSVSKVMGERGYHVSPQQCEDKFNDLN 180
           LIT +SY+GED  S CG    R+  VLQKKGKWKSVSKVM ERG+HVSPQQCEDKFNDLN
Sbjct: 130 LITAVSYIGEDGTSDCGGGMRRKFTVLQKKGKWKSVSKVMAERGFHVSPQQCEDKFNDLN 189

Query: 181 KRYKRLNDMLGRGTSCEAVENPAVLDEIDYLKAKEKDDVRKILNSKHLFYEEMCSYHNGN 240
           KRYKRLNDMLGRGTSC+ VENPA+LD IDYL  KEKDDVRKILNSKHLFYEEMCSYHNGN
Sbjct: 190 KRYKRLNDMLGRGTSCQVVENPALLDVIDYLTEKEKDDVRKILNSKHLFYEEMCSYHNGN 249

Query: 241 RLHLPHDPELLHSLQLVLGNRID-SSRVARFVTNQVVAETDRICQLQQLRIESHCIELEE 300
           RLHLPHDP L  SLQL L +R D  +  AR   +  + E D     Q++  + H  E EE
Sbjct: 250 RLHLPHDPALQRSLQLALRSRDDHDNDDARRHQHDDLDEDD-----QEIETDDH-DEFEE 309

Query: 301 -------------------KRVRIEIG------------------------------RLE 338
                              KR R   G                              +L+
Sbjct: 310 NHASHGDCRGIHGVLGGSAKRPRQGQGHEDAFSPESSKAVWLQKQWMESRTLQLEERKLQ 369

[Close]
BLAST of CmoCh01G010540 vs. TAIR10
Match: AT1G21200.1 (AT1G21200.1 sequence-specific DNA binding transcription factors)

HSP 1 Score: 286.6 bits (732), Expect = 2.1e-77
Identity = 155/256 (60.55%), Postives = 176/256 (68.75%), Query Frame = 1 

Query: 4   GGVSYGGGDWQGSMGVPYQHP--QYHDSSRYQSPVRGSFPLTMGSLQQRDHW----IGLG 63
           G  SYGG D QGSM V +Q    Q H  +    P+    P TM + Q  DH     + + 
Sbjct: 14  GASSYGGFDLQGSMRVHHQDSMNQQHRHNPNSRPLHEGLPFTMVTGQTCDHHQNQNMSMS 73

Query: 64  DYDNRERGNDMTSDEDEE------GIYVHNDARNEKNGSQWQRVKWTNKMVKLLITVLSY 123
           +    ER  +  SD+DE       G  VHN+A     GS WQRVKWT+KMVKLLIT +SY
Sbjct: 74  EQQKAEREKNSVSDDDEPSFTEEGGDGVHNEANRSTKGSPWQRVKWTDKMVKLLITAVSY 133

Query: 124 MGEDSGSGCGSLGTRRLVVLQKKGKWKSVSKVMGERGYHVSPQQCEDKFNDLNKRYKRLN 183
           +G+DS     S   R+  VLQKKGKWKSVSKVM ERGYHVSPQQCEDKFNDLNKRYK+LN
Sbjct: 134 IGDDSSIDSSS--RRKFAVLQKKGKWKSVSKVMAERGYHVSPQQCEDKFNDLNKRYKKLN 193

Query: 184 DMLGRGTSCEAVENPAVLDEIDYLKAKEKDDVRKILNSKHLFYEEMCSYHNGNRLHLPHD 243
           DMLGRGTSC+ VENPA+LD I YL  KEKDDVRKI++SKHLFYEEMCSYHNGNRLHLPHD
Sbjct: 194 DMLGRGTSCQVVENPALLDSIGYLNDKEKDDVRKIMSSKHLFYEEMCSYHNGNRLHLPHD 253

Query: 244 PELLHSLQLVLGNRID 248
             L  SLQL L +R D
Sbjct: 254 LALQRSLQLALRSRDD 267

[Close]
BLAST of CmoCh01G010540 vs. TAIR10
Match: AT1G76870.1 (AT1G76870.1 BEST Arabidopsis thaliana protein match is: sequence-specific DNA binding transcription factors (TAIR:AT1G21200.1))

HSP 1 Score: 258.8 bits (660), Expect = 4.6e-69
Identity = 126/190 (66.32%), Postives = 151/190 (79.47%), Query Frame = 1 

Query: 59  YDNRERGNDMTSDEDEEGIYVHNDARNEKNGSQWQRVKWTNKMVKLLITVLSYMGEDSGS 118
           ++N +RG    S++DE  +   +     K  S WQRVKW +KMVKL+IT LSY+GEDSGS
Sbjct: 50  HNNVDRGKKSMSEDDELCLLSSDGQNKSKENSPWQRVKWMDKMVKLMITALSYIGEDSGS 109

Query: 119 GCGSLGTRRLVVLQKKGKWKSVSKVMGERGYHVSPQQCEDKFNDLNKRYKRLNDMLGRGT 178
                  ++  VLQKKGKW+SVSKVM ERGYHVSPQQCEDKFNDLNKRYK+LN+MLGRGT
Sbjct: 110 D------KKFAVLQKKGKWRSVSKVMDERGYHVSPQQCEDKFNDLNKRYKKLNEMLGRGT 169

Query: 179 SCEAVENPAVLDEIDYLKAKEKDDVRKILNSKHLFYEEMCSYHNGNRLHLPHDPELLHSL 238
           SCE VENP++LD+IDYL  KEKD+VR+I++SKHLFYEEMCSYHNGNRLHLPHDP +  SL
Sbjct: 170 SCEVVENPSLLDKIDYLNEKEKDEVRRIMSSKHLFYEEMCSYHNGNRLHLPHDPAVQRSL 229

Query: 239 QLV-LGNRID 248
            L+ LG+R D
Sbjct: 230 HLITLGSRDD 233

[Close]
BLAST of CmoCh01G010540 vs. TAIR10
Match: AT3G10040.1 (AT3G10040.1 sequence-specific DNA binding transcription factors)

HSP 1 Score: 166.0 bits (419), Expect = 4.1e-41
Identity = 122/351 (34.76%), Postives = 184/351 (52.42%), Query Frame = 1 

Query: 19  VPYQHPQYHDSS---RYQSPVRGSFPLTMGSLQQRDHWIGLGDYDNRERGNDMTSD---E 78
           + +QHP  + +S   + Q P++  +P      Q     I  G  D+ +RG+   S    E
Sbjct: 30  IQFQHPHPYTTSGDQQTQPPIKSLYPYASKPKQMSP--ISGGGCDDEDRGSGSGSGCNPE 89

Query: 79  DEEGIYVHNDARNEKNGSQWQRVKWTNKMVKLLITVLSYMGEDSG----------SGCGS 138
           D  G         ++  SQW R+KWT+ MV+LLI  + Y+G+++G          +G G 
Sbjct: 90  DSAG------TDGKRKLSQWHRMKWTDTMVRLLIMAVFYIGDEAGLNDPVDAKKKTGGGG 149

Query: 139 LGTRRLVVLQKKGKWKSVSKVMGERGYHVSPQQCEDKFNDLNKRYKRLNDMLGRGTSCEA 198
            G     +LQKKGKWKSVS+ M E+G+ VSPQQCEDKFNDLNKRYKR+ND+LG+G +C  
Sbjct: 150 GGGGGGGMLQKKGKWKSVSRAMVEKGFSVSPQQCEDKFNDLNKRYKRVNDILGKGIACRV 209

Query: 199 VENPAVLDEIDYLKAKEKDDVRKILNSKHLFYEEMCSYHNGNRLHLPHDPE--------- 258
           VEN  +L+ +D+L  K KD+V+K+LNSKHLF+ EMC+YHN       HD +         
Sbjct: 210 VENQGLLESMDHLTPKLKDEVKKLLNSKHLFFREMCAYHNSCGHLGGHDQQPPQQNPISI 269

Query: 259 LLHSLQLVLGNRIDSSRVARFVTNQVVAETDRICQLQQLRIESHCIELEE----KRVRIE 318
            + S Q    +  ++ ++AR      V E       +    E    E EE    +R+   
Sbjct: 270 PIPSQQQNCFHAAEAGKMARIAERVEVEEEVESDMAEDSESEMEESEEEETRKKRRISTA 329

Query: 319 IGRLELENERMKWERFKKKRERE--LEKLKLENERMRVENELIASQLKKRR 339
           + RL  E   +  +  K   E++  + +  LE E  ++  E    +++K+R
Sbjct: 330 VKRLREEAASVVEDVGKSVWEKKEWIRRKMLEIEEKKIGYEWEGVEMEKQR 372

[Close]
BLAST of CmoCh01G010540 vs. NCBI nr
Match: gi|590600527|ref|XP_007019480.1| (Sequence-specific DNA binding transcription factors [Theobroma cacao])

HSP 1 Score: 323.9 bits (829), Expect = 3.3e-85
Identity = 170/263 (64.64%), Postives = 192/263 (73.00%), Query Frame = 1 

Query: 1   MIPGGVSYGGGDWQGSMGVPY--QHP----QYHDSSRYQSP-----VRGSFPLTMGSLQQ 60
           MI GG S+GG D QGSM V +  QHP    Q+H S+  Q       +   FPLTMG++Q 
Sbjct: 10  MISGGGSFGGLDVQGSMRVHHHAQHPHNIHQHHHSNPRQGASIHPSIHEGFPLTMGTMQN 69

Query: 61  RDHWIGLGDYDNRERGNDMTSDEDE-----EGIYVHNDARNEKNGSQWQRVKWTNKMVKL 120
            D  I + DY+  ER     SDEDE     EG+  HND    K GS WQRVKWT+KMV+L
Sbjct: 70  CDQTIAMTDYNKGERRKSSVSDEDEPSFTEEGVDGHNDGTKGKKGSPWQRVKWTDKMVRL 129

Query: 121 LITVLSYMGEDSGSGCGSLGTRRLVVLQKKGKWKSVSKVMGERGYHVSPQQCEDKFNDLN 180
           LIT +SY+GED+   CG    R+  VLQKKGKWKSVSKVM ERGYHVSPQQCEDKFNDLN
Sbjct: 130 LITAVSYIGEDAAGDCGGGMRRKFAVLQKKGKWKSVSKVMAERGYHVSPQQCEDKFNDLN 189

Query: 181 KRYKRLNDMLGRGTSCEAVENPAVLDEIDYLKAKEKDDVRKILNSKHLFYEEMCSYHNGN 240
           KRYK+LNDMLGRGTSC+ VENPA+LD IDYL  KEKDDVRKIL+SKHLFYEEMCSYHNGN
Sbjct: 190 KRYKKLNDMLGRGTSCQVVENPALLDVIDYLTEKEKDDVRKILSSKHLFYEEMCSYHNGN 249

Query: 241 RLHLPHDPELLHSLQLVLGNRID 248
           RLHLPHDP+L  SLQL L +R D
Sbjct: 250 RLHLPHDPQLQRSLQLALRSRDD 272

[Close]
BLAST of CmoCh01G010540 vs. NCBI nr
Match: gi|823164945|ref|XP_012482417.1| (PREDICTED: uncharacterized protein LOC105797036 [Gossypium raimondii])

HSP 1 Score: 323.6 bits (828), Expect = 4.3e-85
Identity = 165/266 (62.03%), Postives = 187/266 (70.30%), Query Frame = 1 

Query: 1   MIPGGVSYGGGDWQGSMGV-----------PYQHPQYHDSSRYQSPVRGSFPLTMGSLQQ 60
           MIPGG S+GG D QGSM V            + HP     +   + +   FPL MG++Q 
Sbjct: 10  MIPGGGSFGGLDLQGSMRVHNHAQNPHSIHQHHHPNPRQGASLHASIHEDFPLKMGNIQN 69

Query: 61  RDHWIGLGDYDNRERGNDMTSDEDE-----EGIYVHNDARNEKNGSQWQRVKWTNKMVKL 120
            D  I L DY+  ERG    SDEDE     EGI  HND    K GS WQRVKWT+KMV+L
Sbjct: 70  SDQIISLMDYNKGERGKSSVSDEDEPSFTEEGIDGHNDGSKGKKGSPWQRVKWTDKMVRL 129

Query: 121 LITVLSYMGEDSGSGCGSLGTRRLVVLQKKGKWKSVSKVMGERGYHVSPQQCEDKFNDLN 180
           LIT +SY+GED+  GCG    R+  V+QKKGKWKSVSKVM ER YHVSPQQCEDKFNDLN
Sbjct: 130 LITAVSYIGEDAAGGCGGGMRRKFAVIQKKGKWKSVSKVMAERSYHVSPQQCEDKFNDLN 189

Query: 181 KRYKRLNDMLGRGTSCEAVENPAVLDEIDYLKAKEKDDVRKILNSKHLFYEEMCSYHNGN 240
           KRYK+LNDMLGRGTSC+ VENPA+LD IDYL  KEKDDVRKIL+SKHLFYEEMCSYHNGN
Sbjct: 190 KRYKKLNDMLGRGTSCQVVENPALLDVIDYLTEKEKDDVRKILSSKHLFYEEMCSYHNGN 249

Query: 241 RLHLPHDPELLHSLQLVLGNRIDSSR 251
           RLHLPHDP+L  SLQL    + D  +
Sbjct: 250 RLHLPHDPQLQRSLQLAFRIKDDQEK 275

[Close]
BLAST of CmoCh01G010540 vs. NCBI nr
Match: gi|567883791|ref|XP_006434454.1| (hypothetical protein CICLE_v10001142mg [Citrus clementina])

HSP 1 Score: 322.0 bits (824), Expect = 1.3e-84
Identity = 165/264 (62.50%), Postives = 192/264 (72.73%), Query Frame = 1 

Query: 1   MIPGGVSYGGGDWQGSMGVPYQ-------HPQYHDSSRYQSP-----VRGSFPLTMGSLQ 60
           MIPGG S+GG D QGSM V +Q       HP +H  +  Q P     +   FPLT+G++Q
Sbjct: 10  MIPGGASFGGIDLQGSMRVHHQAQHPHAMHPHHHTINPRQGPSVHPSIHEGFPLTIGTMQ 69

Query: 61  QRDHWIGLGDYDNRERGNDMTSDED-----EEGIYVHNDARNEKNGSQWQRVKWTNKMVK 120
             D  I + DY+  ERG +  SD+D     EEG   HNDA   K GS WQRVKW +KMVK
Sbjct: 70  SSDQTISMTDYNKGERGKNSFSDDDDPSLTEEGGEGHNDAGKGKKGSPWQRVKWADKMVK 129

Query: 121 LLITVLSYMGEDSGSGCGSLGTRRLVVLQKKGKWKSVSKVMGERGYHVSPQQCEDKFNDL 180
           LLIT +SY+GED+ S CG    R+  VLQKKGKWK++SKVM ERG+HVSPQQCEDKFNDL
Sbjct: 130 LLITAVSYVGEDTSSDCGGGARRKFAVLQKKGKWKAISKVMAERGFHVSPQQCEDKFNDL 189

Query: 181 NKRYKRLNDMLGRGTSCEAVENPAVLDEIDYLKAKEKDDVRKILNSKHLFYEEMCSYHNG 240
           NKRYK+LNDMLGRGTSC+ VENP++LD ID+L  KEKDDVRKIL+SKHLFYEEMCSYHNG
Sbjct: 190 NKRYKKLNDMLGRGTSCQVVENPSLLDVIDFLTEKEKDDVRKILSSKHLFYEEMCSYHNG 249

Query: 241 NRLHLPHDPELLHSLQLVLGNRID 248
           NRLHLPHD  L  SLQL L +R D
Sbjct: 250 NRLHLPHDLPLQRSLQLALRSRDD 273

[Close]
BLAST of CmoCh01G010540 vs. NCBI nr
Match: gi|743899114|ref|XP_011042849.1| (PREDICTED: uncharacterized protein LOC105138468 [Populus euphratica])

HSP 1 Score: 322.0 bits (824), Expect = 1.3e-84
Identity = 168/263 (63.88%), Postives = 188/263 (71.48%), Query Frame = 1 

Query: 1   MIPGGVSYGGGDWQGSMGVPYQ-------HPQYHDSSRYQSP----VRGSFPLTMGSLQQ 60
           M+PGG  +GG D QGSM V +Q       H  +H   R  S     V   FPLTMG +  
Sbjct: 10  MVPGGAPFGGLDLQGSMRVHHQAQHPHTMHHHHHHLHRQGSSTLTSVEEGFPLTMGFMHN 69

Query: 61  RDHWIGLGDYDNRERGNDMTSDEDE-----EGIYVHNDARNEKNGSQWQRVKWTNKMVKL 120
            D  I + DY+  +RG +  SDEDE     EG   HNDA   K G+ WQRVKWT+KMV+L
Sbjct: 70  SDQNISMTDYNKGDRGKNSVSDEDEPSYTEEGADGHNDAITGKKGTPWQRVKWTDKMVRL 129

Query: 121 LITVLSYMGEDSGSGCGSLGTRRLVVLQKKGKWKSVSKVMGERGYHVSPQQCEDKFNDLN 180
           LIT +SY+GED  S CG    R+  VLQKKGKWKS+SKVM ERG+HVSPQQCEDKFNDLN
Sbjct: 130 LITAVSYIGEDGTSDCGGGMRRKFTVLQKKGKWKSISKVMAERGFHVSPQQCEDKFNDLN 189

Query: 181 KRYKRLNDMLGRGTSCEAVENPAVLDEIDYLKAKEKDDVRKILNSKHLFYEEMCSYHNGN 240
           KRYKRLNDMLGRGTSC+ VENPA+LD IDYL  KEKDDVRKILNSKHLFYEEMCSYHNGN
Sbjct: 190 KRYKRLNDMLGRGTSCQVVENPALLDVIDYLTEKEKDDVRKILNSKHLFYEEMCSYHNGN 249

Query: 241 RLHLPHDPELLHSLQLVLGNRID 248
           RLHLPHDP L  SLQL L +R D
Sbjct: 250 RLHLPHDPALQRSLQLALRSRDD 272

[Close]
BLAST of CmoCh01G010540 vs. NCBI nr
Match: gi|568838094|ref|XP_006473052.1| (PREDICTED: uncharacterized protein LOC102612442 [Citrus sinensis])

HSP 1 Score: 322.0 bits (824), Expect = 1.3e-84
Identity = 165/264 (62.50%), Postives = 192/264 (72.73%), Query Frame = 1 

Query: 1   MIPGGVSYGGGDWQGSMGVPYQ-------HPQYHDSSRYQSP-----VRGSFPLTMGSLQ 60
           MIPGG S+GG D QGSM V +Q       HP +H  +  Q P     +   FPLT+G++Q
Sbjct: 10  MIPGGASFGGIDLQGSMRVHHQAQHPHAMHPHHHTINPRQGPSVHPSIHEGFPLTIGTMQ 69

Query: 61  QRDHWIGLGDYDNRERGNDMTSDED-----EEGIYVHNDARNEKNGSQWQRVKWTNKMVK 120
             D  I + DY+  ERG +  SD+D     EEG   HNDA   K GS WQRVKW +KMVK
Sbjct: 70  SSDQTISMTDYNKGERGKNSFSDDDDPSLTEEGGEGHNDAGKGKKGSPWQRVKWADKMVK 129

Query: 121 LLITVLSYMGEDSGSGCGSLGTRRLVVLQKKGKWKSVSKVMGERGYHVSPQQCEDKFNDL 180
           LLIT +SY+GED+ S CG    R+  VLQKKGKWK++SKVM ERG+HVSPQQCEDKFNDL
Sbjct: 130 LLITAVSYVGEDTSSDCGGGARRKFAVLQKKGKWKAISKVMAERGFHVSPQQCEDKFNDL 189

Query: 181 NKRYKRLNDMLGRGTSCEAVENPAVLDEIDYLKAKEKDDVRKILNSKHLFYEEMCSYHNG 240
           NKRYK+LNDMLGRGTSC+ VENP++LD ID+L  KEKDDVRKIL+SKHLFYEEMCSYHNG
Sbjct: 190 NKRYKKLNDMLGRGTSCQVVENPSLLDVIDFLTEKEKDDVRKILSSKHLFYEEMCSYHNG 249

Query: 241 NRLHLPHDPELLHSLQLVLGNRID 248
           NRLHLPHD  L  SLQL L +R D
Sbjct: 250 NRLHLPHDLPLQRSLQLALRSRDD 273

The following BLAST results are available for this feature:
BLAST of CmoCh01G010540 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh01G010540 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A061FHC2_THECC2.3e-8564.64Sequence-specific DNA binding transcription factors OS=Theobroma cacao GN=TCM_03... [more]
A0A0D2RHC7_GOSRA3.0e-8562.03Uncharacterized protein OS=Gossypium raimondii GN=B456_005G079200 PE=4 SV=1[more]
V4V6N5_9ROSI8.8e-8562.50Uncharacterized protein OS=Citrus clementina GN=CICLE_v10001142mg PE=4 SV=1[more]
A0A067GYJ6_CITSI8.8e-8562.50Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g013261mg PE=4 SV=1[more]
B9GTJ4_POPTR1.3e-8348.54Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s06930g PE=4 SV=2[more]
BLAST of CmoCh01G010540 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G21200.12.1e-7760.55 sequence-specific DNA binding transcription factors[more]
AT1G76870.14.6e-6966.32 BEST Arabidopsis thaliana protein match is: sequence-specific DNA bi... [more]
AT3G10040.14.1e-4134.76 sequence-specific DNA binding transcription factors[more]
BLAST of CmoCh01G010540 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|590600527|ref|XP_007019480.1|3.3e-8564.64Sequence-specific DNA binding transcription factors [Theobroma cacao][more]
gi|823164945|ref|XP_012482417.1|4.3e-8562.03PREDICTED: uncharacterized protein LOC105797036 [Gossypium raimondii][more]
gi|567883791|ref|XP_006434454.1|1.3e-8462.50hypothetical protein CICLE_v10001142mg [Citrus clementina][more]
gi|743899114|ref|XP_011042849.1|1.3e-8463.88PREDICTED: uncharacterized protein LOC105138468 [Populus euphratica][more]
gi|568838094|ref|XP_006473052.1|1.3e-8462.50PREDICTED: uncharacterized protein LOC102612442 [Citrus sinensis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh01G010540.1CmoCh01G010540.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableunknownCoilCoilcoord: 306..335
scor
NoneNo IPR availablePANTHERPTHR21654FAMILY NOT NAMEDcoord: 1..336
score: 2.4E
NoneNo IPR availablePANTHERPTHR21654:SF11F16F4.11 PROTEINcoord: 1..336
score: 2.4E
NoneNo IPR availablePFAMPF13837Myb_DNA-bind_4coord: 94..219
score: 4.0

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh01G010540Cp4.1LG02g09070Cucurbita pepo (Zucchini)cmocpeB448
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh01G010540Melon (DHL92) v3.6.1cmomedB463
CmoCh01G010540Silver-seed gourdcarcmoB0093
CmoCh01G010540Silver-seed gourdcarcmoB0822
CmoCh01G010540Cucurbita moschata (Rifu)cmocmoB018
CmoCh01G010540Cucurbita moschata (Rifu)cmocmoB367
CmoCh01G010540Cucurbita maxima (Rimu)cmacmoB048
CmoCh01G010540Cucurbita maxima (Rimu)cmacmoB468
CmoCh01G010540Melon (DHL92) v3.5.1cmomeB404
CmoCh01G010540Cucurbita pepo (Zucchini)cmocpeB464
CmoCh01G010540Bottle gourd (USVL1VR-Ls)cmolsiB444