CmoCh01G009600 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh01G009600
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	30S ribosomal protein S12-B
Location	Cmo_Chr01 : 5990373 .. 5990756 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGAGGGGAGGAGATTCTCGAACGAGGAAAAGGATCCAATGACTTCGAAAGAATTGAACGAGGAGCCGTATGAGGTGAAAATCTCATGTACGGTTCTGTCGAGTGGCAGTAAGGGTGACTTATCTGTCAACTTTTCCACTATCACCCCCAAAAAACCAAACTCTGCCTTACGTAAAGTTGCCAGAGTACGCTTAACCTCGGGATTTGAAATCACTGCTTATATACCTGGTATTGGCCATAATTTACAAGAACATTCTGTAGTCTTAGTAAGAGGGGGAAGGGTTAAGGATTTACCCGGTGTGAGATATCACATTGTTCGAGGAACCCTAGATGCTGTCGGAGTAAAGGATCGTCAACAAGGGCGTTCTAGTGCGTTGTAG

mRNA sequence

ATGGAAGAGGGGAGGAGATTCTCGAACGAGGAAAAGGATCCAATGACTTCGAAAGAATTGAACGAGGAGCCGTATGAGGTGAAAATCTCATGTACGGTTCTGTCGAGTGGCAGTAAGGGTGACTTATCTGTCAACTTTTCCACTATCACCCCCAAAAAACCAAACTCTGCCTTACGTAAAGTTGCCAGAGTACGCTTAACCTCGGGATTTGAAATCACTGCTTATATACCTGGTATTGGCCATAATTTACAAGAACATTCTGTAGTCTTAGTAAGAGGGGGAAGGGTTAAGGATTTACCCGGTGTGAGATATCACATTGTTCGAGGAACCCTAGATGCTGTCGGAGTAAAGGATCGTCAACAAGGGCGTTCTAGTGCGTTGTAG

Coding sequence (CDS)

ATGGAAGAGGGGAGGAGATTCTCGAACGAGGAAAAGGATCCAATGACTTCGAAAGAATTGAACGAGGAGCCGTATGAGGTGAAAATCTCATGTACGGTTCTGTCGAGTGGCAGTAAGGGTGACTTATCTGTCAACTTTTCCACTATCACCCCCAAAAAACCAAACTCTGCCTTACGTAAAGTTGCCAGAGTACGCTTAACCTCGGGATTTGAAATCACTGCTTATATACCTGGTATTGGCCATAATTTACAAGAACATTCTGTAGTCTTAGTAAGAGGGGGAAGGGTTAAGGATTTACCCGGTGTGAGATATCACATTGTTCGAGGAACCCTAGATGCTGTCGGAGTAAAGGATCGTCAACAAGGGCGTTCTAGTGCGTTGTAG

Homology

[Close]

BLAST of CmoCh01G009600 vs. Swiss-Prot
Match: RR12B_POPTR (30S ribosomal protein S12-B, chloroplastic OS=Populus trichocarpa GN=rps12-B PE=3 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 8.0e-45
Identity = 90/95 (94.74%), Postives = 92/95 (96.84%), Query Frame = 1


Query: 30  SCTVLSSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVV 89
           +CT + SGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHN QEHSVV
Sbjct: 33  TCTRVYSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNSQEHSVV 92

Query: 90  LVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRS 125
           LVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRS
Sbjct: 93  LVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRS 127

[Close]

BLAST of CmoCh01G009600 vs. Swiss-Prot
Match: RR12B_OLIPU (30S ribosomal protein S12-B, chloroplastic OS=Olimarabidopsis pumila GN=rps12-B PE=3 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 1.9e-38
Identity = 79/86 (91.86%), Postives = 82/86 (95.35%), Query Frame = 1


Query: 39  KGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKD 98
           +G  +  +STITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKD
Sbjct: 31  RGTCTRVYSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKD 90

Query: 99  LPGVRYHIVRGTLDAVGVKDRQQGRS 125
           LPGVRYHIVRGTLDAVGVKDRQQGRS
Sbjct: 91  LPGVRYHIVRGTLDAVGVKDRQQGRS 116

[Close]

BLAST of CmoCh01G009600 vs. Swiss-Prot
Match: RR12_HELAN (30S ribosomal protein S12, chloroplastic OS=Helianthus annuus GN=rps12-A PE=3 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 2.5e-38
Identity = 79/80 (98.75%), Postives = 79/80 (98.75%), Query Frame = 1


Query: 48  TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIV 107
           TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHN QEHSVVLVRGGRVKDLPGVRYHIV
Sbjct: 39  TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNSQEHSVVLVRGGRVKDLPGVRYHIV 98

Query: 108 RGTLDAVGVKDRQQGRSSAL 128
           RGTLDAVGVKDRQQGRSSAL
Sbjct: 99  RGTLDAVGVKDRQQGRSSAL 118

[Close]

BLAST of CmoCh01G009600 vs. Swiss-Prot
Match: RR12_LACSA (30S ribosomal protein S12, chloroplastic OS=Lactuca sativa GN=rps12-A PE=3 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 2.5e-38
Identity = 79/80 (98.75%), Postives = 79/80 (98.75%), Query Frame = 1


Query: 48  TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIV 107
           TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHN QEHSVVLVRGGRVKDLPGVRYHIV
Sbjct: 39  TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNSQEHSVVLVRGGRVKDLPGVRYHIV 98

Query: 108 RGTLDAVGVKDRQQGRSSAL 128
           RGTLDAVGVKDRQQGRSSAL
Sbjct: 99  RGTLDAVGVKDRQQGRSSAL 118

[Close]

BLAST of CmoCh01G009600 vs. Swiss-Prot
Match: RR12_LIRTU (30S ribosomal protein S12, chloroplastic OS=Liriodendron tulipifera GN=rps12-A PE=3 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 2.5e-38
Identity = 79/80 (98.75%), Postives = 79/80 (98.75%), Query Frame = 1


Query: 48  TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIV 107
           TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHN QEHSVVLVRGGRVKDLPGVRYHIV
Sbjct: 39  TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNSQEHSVVLVRGGRVKDLPGVRYHIV 98

Query: 108 RGTLDAVGVKDRQQGRSSAL 128
           RGTLDAVGVKDRQQGRSSAL
Sbjct: 99  RGTLDAVGVKDRQQGRSSAL 118

[Close]

BLAST of CmoCh01G009600 vs. TrEMBL
Match: A0A0C5G6K8_IPOBA (Ribosomal protein S12 OS=Ipomoea batatas GN=rps12 PE=4 SV=1)

HSP 1 Score: 220.3 bits (560), Expect = 1.3e-54
Identity = 111/113 (98.23%), Postives = 111/113 (98.23%), Query Frame = 1


Query: 15  MTSKELNEEPYEVKISCTVLSSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITA 74
           M SKELNEEPYEVKISCTVL SGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITA
Sbjct: 1   MNSKELNEEPYEVKISCTVLKSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITA 60

Query: 75  YIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL 128
           YIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL
Sbjct: 61  YIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL 113

[Close]

BLAST of CmoCh01G009600 vs. TrEMBL
Match: U5CU38_AMBTC (Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s02071p00004290 PE=4 SV=1)

HSP 1 Score: 216.5 bits (550), Expect = 1.9e-53
Identity = 113/127 (88.98%), Postives = 116/127 (91.34%), Query Frame = 1


Query: 1   MEEGRRFSNEEKDPMTSKELNEEPYEVKISCTVLSSGSKGDLSVNFSTITPKKPNSALRK 60
           +EEGRRFS+EEKDP+TSKELNEEPYE         S SKGDLSVNFSTITPKKPNSALRK
Sbjct: 23  VEEGRRFSSEEKDPITSKELNEEPYE---------SDSKGDLSVNFSTITPKKPNSALRK 82

Query: 61  VARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQ 120
           VARVRLTSGFEITAYIPGIGHN QEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQ
Sbjct: 83  VARVRLTSGFEITAYIPGIGHNSQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQ 140

Query: 121 QGRSSAL 128
           QGRSSAL
Sbjct: 143 QGRSSAL 140

[Close]

BLAST of CmoCh01G009600 vs. TrEMBL
Match: A0A059C1Y4_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_E00717 PE=4 SV=1)

HSP 1 Score: 211.1 bits (536), Expect = 8.0e-52
Identity = 111/127 (87.40%), Postives = 112/127 (88.19%), Query Frame = 1


Query: 1   MEEGRRFSNEEKDPMTSKELNEEPYEVKISCTVLSSGSKGDLSVNFSTITPKKPNSALRK 60
           +EEGRRFSNEEKDPMTSKELNEEP              KGDLSVNFSTITPKKPNSALRK
Sbjct: 23  VEEGRRFSNEEKDPMTSKELNEEP--------------KGDLSVNFSTITPKKPNSALRK 82

Query: 61  VARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQ 120
           VARVRLTSGFEITAYIPGIGHN QEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQ
Sbjct: 83  VARVRLTSGFEITAYIPGIGHNSQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQ 135

Query: 121 QGRSSAL 128
           QGRSSAL
Sbjct: 143 QGRSSAL 135

[Close]

BLAST of CmoCh01G009600 vs. TrEMBL
Match: A0A0D2NAB6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G100800 PE=4 SV=1)

HSP 1 Score: 206.1 bits (523), Expect = 2.6e-50
Identity = 108/127 (85.04%), Postives = 111/127 (87.40%), Query Frame = 1


Query: 1   MEEGRRFSNEEKDPMTSKELNEEPYEVKISCTVLSSGSKGDLSVNFSTITPKKPNSALRK 60
           +EEGRRFSNEEKDPMTSKELNEEP              KGDLSVNFSTITPKKPNSALRK
Sbjct: 23  VEEGRRFSNEEKDPMTSKELNEEP--------------KGDLSVNFSTITPKKPNSALRK 82

Query: 61  VARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQ 120
           VA+VRLTSGFEITAYIPGIGHN QEHSVVLVRGGRV+DLP VRYHIVRGTLDAVGVKDRQ
Sbjct: 83  VAKVRLTSGFEITAYIPGIGHNSQEHSVVLVRGGRVEDLPSVRYHIVRGTLDAVGVKDRQ 135

Query: 121 QGRSSAL 128
           QGRSSAL
Sbjct: 143 QGRSSAL 135

[Close]

BLAST of CmoCh01G009600 vs. TrEMBL
Match: A0A022RTS9_ERYGU (Uncharacterized protein (Fragment) OS=Erythranthe guttata GN=MIMGU_mgv11b016653mg PE=4 SV=1)

HSP 1 Score: 205.3 bits (521), Expect = 4.4e-50
Identity = 110/128 (85.94%), Postives = 112/128 (87.50%), Query Frame = 1


Query: 2   EEGRR--FSNEEKDPMTSKELNEEPYEVKISCTVLSSGSKGDLSVNFSTITPKKPNSALR 61
           + GRR   S+ EKDPM SKELNEEPYE         SGSKGDLSVNFSTITPKKPNSALR
Sbjct: 34  QSGRREGISSAEKDPMKSKELNEEPYE---------SGSKGDLSVNFSTITPKKPNSALR 93

Query: 62  KVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDR 121
           KVARVRLTSGFEITAYIPGIGHNLQEHS VLVRGGRVKDLPGVRYHIVRGTLDAVGVKDR
Sbjct: 94  KVARVRLTSGFEITAYIPGIGHNLQEHSSVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDR 152

Query: 122 QQGRSSAL 128
           QQGRSSAL
Sbjct: 154 QQGRSSAL 152

[Close]

BLAST of CmoCh01G009600 vs. TAIR10
Match: ATCG00065.1 (ATCG00065.1 ribosomal protein S12A)

HSP 1 Score: 156.8 bits (395), Expect = 9.1e-39
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 1


Query: 48  TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIV 107
           TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIV
Sbjct: 39  TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIV 98

Query: 108 RGTLDAVGVKDRQQGRS 125
           RGTLDAVGVKDRQQGRS
Sbjct: 99  RGTLDAVGVKDRQQGRS 115

[Close]

BLAST of CmoCh01G009600 vs. TAIR10
Match: ATCG01230.1 (ATCG01230.1 ribosomal protein S12B)

HSP 1 Score: 156.8 bits (395), Expect = 9.1e-39
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 1


Query: 48  TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIV 107
           TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIV
Sbjct: 39  TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIV 98

Query: 108 RGTLDAVGVKDRQQGRS 125
           RGTLDAVGVKDRQQGRS
Sbjct: 99  RGTLDAVGVKDRQQGRS 115

[Close]

BLAST of CmoCh01G009600 vs. TAIR10
Match: ATCG00905.1 (ATCG00905.1 ribosomal protein S12C)

HSP 1 Score: 156.8 bits (395), Expect = 9.1e-39
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 1


Query: 48  TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIV 107
           TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIV
Sbjct: 39  TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIV 98

Query: 108 RGTLDAVGVKDRQQGRS 125
           RGTLDAVGVKDRQQGRS
Sbjct: 99  RGTLDAVGVKDRQQGRS 115

[Close]

BLAST of CmoCh01G009600 vs. TAIR10
Match: AT2G07675.1 (AT2G07675.1 Ribosomal protein S12/S23 family protein)

HSP 1 Score: 105.1 bits (261), Expect = 3.1e-23
Identity = 49/78 (62.82%), Postives = 62/78 (79.49%), Query Frame = 1


Query: 47  STITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHI 106
           ST TPKKPNSA RK+A+VRL++  +I A+IPG GHN QEHS VL+RGGRVKD PGV+ H 
Sbjct: 38  STRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNSQEHSTVLIRGGRVKDSPGVKSHC 97

Query: 107 VRGTLDAVGVKDRQQGRS 125
           +RG  D +G+  R++GRS
Sbjct: 98  IRGVKDLMGIPGRRRGRS 115

[Close]

BLAST of CmoCh01G009600 vs. TAIR10
Match: ATMG00980.1 (ATMG00980.1 Ribosomal protein S12/S23 family protein)

HSP 1 Score: 105.1 bits (261), Expect = 3.1e-23
Identity = 49/78 (62.82%), Postives = 62/78 (79.49%), Query Frame = 1


Query: 47  STITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHI 106
           ST TPKKPNSA RK+A+VRL++  +I A+IPG GHN QEHS VL+RGGRVKD PGV+ H 
Sbjct: 38  STRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNSQEHSTVLIRGGRVKDSPGVKSHC 97

Query: 107 VRGTLDAVGVKDRQQGRS 125
           +RG  D +G+  R++GRS
Sbjct: 98  IRGVKDLMGIPGRRRGRS 115

[Close]

BLAST of CmoCh01G009600 vs. NCBI nr
Match: gi|772657602|ref|YP_009128437.1| (ribosomal protein S12 (chloroplast) [Ipomoea batatas])

HSP 1 Score: 220.3 bits (560), Expect = 1.9e-54
Identity = 111/113 (98.23%), Postives = 111/113 (98.23%), Query Frame = 1


Query: 15  MTSKELNEEPYEVKISCTVLSSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITA 74
           M SKELNEEPYEVKISCTVL SGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITA
Sbjct: 1   MNSKELNEEPYEVKISCTVLKSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITA 60

Query: 75  YIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL 128
           YIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL
Sbjct: 61  YIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL 113

[Close]

BLAST of CmoCh01G009600 vs. NCBI nr
Match: gi|548832465|gb|ERM95251.1| (hypothetical protein AMTR_s02071p00004290 [Amborella trichopoda])

HSP 1 Score: 216.5 bits (550), Expect = 2.7e-53
Identity = 113/127 (88.98%), Postives = 116/127 (91.34%), Query Frame = 1


Query: 1   MEEGRRFSNEEKDPMTSKELNEEPYEVKISCTVLSSGSKGDLSVNFSTITPKKPNSALRK 60
           +EEGRRFS+EEKDP+TSKELNEEPYE         S SKGDLSVNFSTITPKKPNSALRK
Sbjct: 23  VEEGRRFSSEEKDPITSKELNEEPYE---------SDSKGDLSVNFSTITPKKPNSALRK 82

Query: 61  VARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQ 120
           VARVRLTSGFEITAYIPGIGHN QEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQ
Sbjct: 83  VARVRLTSGFEITAYIPGIGHNSQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQ 140

Query: 121 QGRSSAL 128
           QGRSSAL
Sbjct: 143 QGRSSAL 140

[Close]

BLAST of CmoCh01G009600 vs. NCBI nr
Match: gi|629107118|gb|KCW72264.1| (hypothetical protein EUGRSUZ_E00717 [Eucalyptus grandis])

HSP 1 Score: 211.1 bits (536), Expect = 1.2e-51
Identity = 111/127 (87.40%), Postives = 112/127 (88.19%), Query Frame = 1


Query: 1   MEEGRRFSNEEKDPMTSKELNEEPYEVKISCTVLSSGSKGDLSVNFSTITPKKPNSALRK 60
           +EEGRRFSNEEKDPMTSKELNEEP              KGDLSVNFSTITPKKPNSALRK
Sbjct: 23  VEEGRRFSNEEKDPMTSKELNEEP--------------KGDLSVNFSTITPKKPNSALRK 82

Query: 61  VARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQ 120
           VARVRLTSGFEITAYIPGIGHN QEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQ
Sbjct: 83  VARVRLTSGFEITAYIPGIGHNSQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQ 135

Query: 121 QGRSSAL 128
           QGRSSAL
Sbjct: 143 QGRSSAL 135

[Close]

BLAST of CmoCh01G009600 vs. NCBI nr
Match: gi|1009172427|ref|XP_015867265.1| (PREDICTED: 30S ribosomal protein S12, chloroplastic-like [Ziziphus jujuba])

HSP 1 Score: 209.5 bits (532), Expect = 3.4e-51
Identity = 106/127 (83.46%), Postives = 114/127 (89.76%), Query Frame = 1


Query: 1   MEEGRRFSNEEKDPMTSKELNEEPYEVKISCTVLSSGSKGDLSVNFSTITPKKPNSALRK 60
           +EEG+RFSNEE D MTSKELNEEPYE+KISC VL +G KGDLS+NFS I PKKPNSAL K
Sbjct: 17  VEEGKRFSNEENDRMTSKELNEEPYEIKISCMVLQNGIKGDLSINFSIIIPKKPNSALSK 76

Query: 61  VARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQ 120
           VARVRLT GFE+T +IPGIGHNLQ+HSVVLVRG RVKDLPGVRY IVRGTLDAV VKDRQ
Sbjct: 77  VARVRLTFGFEMTTFIPGIGHNLQKHSVVLVRGRRVKDLPGVRYPIVRGTLDAVRVKDRQ 136

Query: 121 QGRSSAL 128
           QGRSSAL
Sbjct: 137 QGRSSAL 143

[Close]

BLAST of CmoCh01G009600 vs. NCBI nr
Match: gi|763762188|gb|KJB29442.1| (hypothetical protein B456_005G100800 [Gossypium raimondii])

HSP 1 Score: 206.1 bits (523), Expect = 3.7e-50
Identity = 108/127 (85.04%), Postives = 111/127 (87.40%), Query Frame = 1


Query: 1   MEEGRRFSNEEKDPMTSKELNEEPYEVKISCTVLSSGSKGDLSVNFSTITPKKPNSALRK 60
           +EEGRRFSNEEKDPMTSKELNEEP              KGDLSVNFSTITPKKPNSALRK
Sbjct: 23  VEEGRRFSNEEKDPMTSKELNEEP--------------KGDLSVNFSTITPKKPNSALRK 82

Query: 61  VARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQ 120
           VA+VRLTSGFEITAYIPGIGHN QEHSVVLVRGGRV+DLP VRYHIVRGTLDAVGVKDRQ
Sbjct: 83  VAKVRLTSGFEITAYIPGIGHNSQEHSVVLVRGGRVEDLPSVRYHIVRGTLDAVGVKDRQ 135

Query: 121 QGRSSAL 128
           QGRSSAL
Sbjct: 143 QGRSSAL 135

The following BLAST results are available for this feature:

BLAST of CmoCh01G009600 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RR12B_POPTR	8.0e-45	94.74	30S ribosomal protein S12-B, chloroplastic OS=Populus trichocarpa GN=rps12-B PE=...	[more]
RR12B_OLIPU	1.9e-38	91.86	30S ribosomal protein S12-B, chloroplastic OS=Olimarabidopsis pumila GN=rps12-B ...	[more]
RR12_HELAN	2.5e-38	98.75	30S ribosomal protein S12, chloroplastic OS=Helianthus annuus GN=rps12-A PE=3 SV...	[more]
RR12_LACSA	2.5e-38	98.75	30S ribosomal protein S12, chloroplastic OS=Lactuca sativa GN=rps12-A PE=3 SV=1	[more]
RR12_LIRTU	2.5e-38	98.75	30S ribosomal protein S12, chloroplastic OS=Liriodendron tulipifera GN=rps12-A P...	[more]

BLAST of CmoCh01G009600 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0C5G6K8_IPOBA	1.3e-54	98.23	Ribosomal protein S12 OS=Ipomoea batatas GN=rps12 PE=4 SV=1	[more]
U5CU38_AMBTC	1.9e-53	88.98	Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s02071p00004290 PE=4 SV=...	[more]
A0A059C1Y4_EUCGR	8.0e-52	87.40	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_E00717 PE=4 SV=1	[more]
A0A0D2NAB6_GOSRA	2.6e-50	85.04	Uncharacterized protein OS=Gossypium raimondii GN=B456_005G100800 PE=4 SV=1	[more]
A0A022RTS9_ERYGU	4.4e-50	85.94	Uncharacterized protein (Fragment) OS=Erythranthe guttata GN=MIMGU_mgv11b016653m...	[more]

BLAST of CmoCh01G009600 vs. TAIR10


Match Name	E-value	Identity	Description
ATCG00065.1	9.1e-39	100.00	ATCG00065.1 ribosomal protein S12A	[more]
ATCG01230.1	9.1e-39	100.00	ATCG01230.1 ribosomal protein S12B	[more]
ATCG00905.1	9.1e-39	100.00	ATCG00905.1 ribosomal protein S12C	[more]
AT2G07675.1	3.1e-23	62.82	Ribosomal protein S12/S23 family protein	[more]
ATMG00980.1	3.1e-23	62.82	ATMG00980.1 Ribosomal protein S12/S23 family protein	[more]

BLAST of CmoCh01G009600 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|772657602\|ref\|YP_009128437.1\|	1.9e-54	98.23	ribosomal protein S12 (chloroplast) [Ipomoea batatas]	[more]
gi\|548832465\|gb\|ERM95251.1\|	2.7e-53	88.98	hypothetical protein AMTR_s02071p00004290 [Amborella trichopoda]	[more]
gi\|629107118\|gb\|KCW72264.1\|	1.2e-51	87.40	hypothetical protein EUGRSUZ_E00717 [Eucalyptus grandis]	[more]
gi\|1009172427\|ref\|XP_015867265.1\|	3.4e-51	83.46	PREDICTED: 30S ribosomal protein S12, chloroplastic-like [Ziziphus jujuba]	[more]
gi\|763762188\|gb\|KJB29442.1\|	3.7e-50	85.04	hypothetical protein B456_005G100800 [Gossypium raimondii]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006120	mitochondrial electron transport, NADH to ubiquinone
biological_process	GO:0015992	proton transport
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006814	sodium ion transport
biological_process	GO:0006412	translation
biological_process	GO:0006744	ubiquinone biosynthetic process
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0015935	small ribosomal subunit
molecular_function	GO:0008137	NADH dehydrogenase (ubiquinone) activity
molecular_function	GO:0019843	rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh01G009600.1	CmoCh01G009600.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh01G009600	Cucurbita pepo (Zucchini)	cmocpeB448
CmoCh01G009600	Cucurbita pepo (Zucchini)	cmocpeB464
CmoCh01G009600	Bottle gourd (USVL1VR-Ls)	cmolsiB397
CmoCh01G009600	Bottle gourd (USVL1VR-Ls)	cmolsiB440
CmoCh01G009600	Cucumber (Gy14) v2	cgybcmoB753
CmoCh01G009600	Melon (DHL92) v3.6.1	cmomedB462
CmoCh01G009600	Cucumber (Chinese Long) v3	cmocucB0566
CmoCh01G009600	Watermelon (97103) v2	cmowmbB484
CmoCh01G009600	Watermelon (97103) v2	cmowmbB498
CmoCh01G009600	Wax gourd	cmowgoB0571
CmoCh01G009600	Wax gourd	cmowgoB0608
CmoCh01G009600	Wax gourd	cmowgoB0621
CmoCh01G009600	Cucumber (Gy14) v1	cgycmoB1003
CmoCh01G009600	Cucurbita maxima (Rimu)	cmacmoB468
CmoCh01G009600	Cucurbita maxima (Rimu)	cmacmoB471
CmoCh01G009600	Wild cucumber (PI 183967)	cmocpiB477
CmoCh01G009600	Cucumber (Chinese Long) v2	cmocuB473
CmoCh01G009600	Melon (DHL92) v3.5.1	cmomeB401
CmoCh01G009600	Watermelon (Charleston Gray)	cmowcgB379
CmoCh01G009600	Watermelon (Charleston Gray)	cmowcgB429
CmoCh01G009600	Watermelon (97103) v1	cmowmB405