CmoCh01G009530 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh01G009530
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionMitotic-spindle organizing protein 1B
LocationCmo_Chr01 : 5911700 .. 5911933 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATCCAGAGGCTGCACGAACTGCTCGGGAATCGCTAGATCTTGCCTTTCATATTTCCAACATACTCAATACTGGAATTGATCGCCACACCCTCTCCGTCCTTATTGCTCTCTGTGACATGGGAGTGAACCCGGAGGCTCTAGCTGCTGTTGTTAAGGAACTACGTCAAGAGCCACCTTCATCGGAGGCCATCATCTCCAAGAACACGACATCACTTACCCGACCAACGTAA

mRNA sequence

ATGGATCCAGAGGCTGCACGAACTGCTCGGGAATCGCTAGATCTTGCCTTTCATATTTCCAACATACTCAATACTGGAATTGATCGCCACACCCTCTCCGTCCTTATTGCTCTCTGTGACATGGGAGTGAACCCGGAGGCTCTAGCTGCTGTTGTTAAGGAACTACGTCAAGAGCCACCTTCATCGGAGGCCATCATCTCCAAGAACACGACATCACTTACCCGACCAACGTAA

Coding sequence (CDS)

ATGGATCCAGAGGCTGCACGAACTGCTCGGGAATCGCTAGATCTTGCCTTTCATATTTCCAACATACTCAATACTGGAATTGATCGCCACACCCTCTCCGTCCTTATTGCTCTCTGTGACATGGGAGTGAACCCGGAGGCTCTAGCTGCTGTTGTTAAGGAACTACGTCAAGAGCCACCTTCATCGGAGGCCATCATCTCCAAGAACACGACATCACTTACCCGACCAACGTAA
Homology
[Close]
BLAST of CmoCh01G009530 vs. Swiss-Prot
Match: MZT1B_ARATH (Mitotic-spindle organizing protein 1B OS=Arabidopsis thaliana GN=GIP1 PE=1 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 1.6e-19
Identity = 47/58 (81.03%), Postives = 54/58 (93.10%), Query Frame = 1 

Query: 1  MDPEAARTARESLDLAFHISNILNTGIDRHTLSVLIALCDMGVNPEALAAVVKELRQE 59
          MD EA+RTARESL+L F +SNIL+TG+DRHTLSVLIALCD+GVNPEALA VVKELR+E
Sbjct: 1  MDEEASRTARESLELVFRMSNILDTGLDRHTLSVLIALCDLGVNPEALATVVKELRRE 58

[Close]
BLAST of CmoCh01G009530 vs. Swiss-Prot
Match: MZT1_PICSI (Mitotic-spindle organizing protein 1 OS=Picea sitchensis PE=3 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 5.1e-18
Identity = 46/58 (79.31%), Postives = 51/58 (87.93%), Query Frame = 1 

Query: 1  MDPEAARTARESLDLAFHISNILNTGIDRHTLSVLIALCDMGVNPEALAAVVKELRQE 59
          MD  AA+ ARESLDLAF ISN L TG+DRHTLS+LIALC+ GVNPEALAAVVKELR+E
Sbjct: 1  MDRTAAQNARESLDLAFSISNFLQTGLDRHTLSILIALCEHGVNPEALAAVVKELRRE 58

[Close]
BLAST of CmoCh01G009530 vs. Swiss-Prot
Match: MZT1A_ARATH (Mitotic-spindle organizing protein 1A OS=Arabidopsis thaliana GN=GIP2 PE=1 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 2.5e-17
Identity = 43/66 (65.15%), Postives = 55/66 (83.33%), Query Frame = 1 

Query: 1  MDPEAARTARESLDLAFHISNILNTGIDRHTLSVLIALCDMGVNPEALAAVVKELRQEPP 60
          M+ EAA TARESL+L F +SNIL TG+DRHTLSVLIALCD+G+NPEALA +VKELR++  
Sbjct: 1  MNQEAAETARESLELVFRMSNILETGLDRHTLSVLIALCDIGLNPEALATLVKELRRDSA 60

Query: 61 SSEAII 67
          ++   +
Sbjct: 61 TTTTTV 66

[Close]
BLAST of CmoCh01G009530 vs. Swiss-Prot
Match: MZT1_TAEGU (Mitotic-spindle organizing protein 1 OS=Taeniopygia guttata GN=mzt1 PE=3 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 3.0e-10
Identity = 29/55 (52.73%), Postives = 43/55 (78.18%), Query Frame = 1 

Query: 10 RESLDLAFHISNILNTGIDRHTLSVLIALCDMGVNPEALAAVVKELRQEPPSSEA 65
          RE++D+ F IS ILNTG+D  TLS+ + LC+ G+NPEAL++V+KELR+   + +A
Sbjct: 12 RETMDVLFEISRILNTGLDMETLSICVRLCEQGINPEALSSVIKELRKATEALKA 66

[Close]
BLAST of CmoCh01G009530 vs. Swiss-Prot
Match: MZT1_MOUSE (Mitotic-spindle organizing protein 1 OS=Mus musculus GN=Mzt1 PE=1 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 5.1e-10
Identity = 35/75 (46.67%), Postives = 51/75 (68.00%), Query Frame = 1 

Query: 3  PEAARTA-----RESLDLAFHISNILNTGIDRHTLSVLIALCDMGVNPEALAAVVKELRQ 62
          P AA +A     RE++D+   IS ILNTG+D  TLS+ + LC+ G+NPEAL++V+KELR+
Sbjct: 7  PGAAASANLNAVRETMDVLLEISRILNTGLDMETLSICVRLCEQGINPEALSSVIKELRK 66

Query: 63 EPPSSEAIISKNTTS 73
              +EA+ +   TS
Sbjct: 67 ---GTEALKAAENTS 78

[Close]
BLAST of CmoCh01G009530 vs. TrEMBL
Match: A0A0A0LMZ6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G094370 PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 1.5e-24
Identity = 59/69 (85.51%), Postives = 65/69 (94.20%), Query Frame = 1 

Query: 1  MDPEAARTARESLDLAFHISNILNTGIDRHTLSVLIALCDMGVNPEALAAVVKELRQEPP 60
          MD EAARTARESLDLAFH+SN+L+ GIDRHTLSVLIALCDMGVNPEALAAVVKELR+EPP
Sbjct: 1  MDQEAARTARESLDLAFHMSNVLDAGIDRHTLSVLIALCDMGVNPEALAAVVKELRREPP 60

Query: 61 SSEAIISKN 70
          SS+ I+S N
Sbjct: 61 SSDTIVSSN 69

[Close]
BLAST of CmoCh01G009530 vs. TrEMBL
Match: A0A0D2TES9_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G288400 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 2.4e-22
Identity = 55/70 (78.57%), Postives = 65/70 (92.86%), Query Frame = 1 

Query: 1  MDPEAARTARESLDLAFHISNILNTGIDRHTLSVLIALCDMGVNPEALAAVVKELRQEPP 60
          MDPEAARTARESLDLAFH+SNIL+TG+DRHTLSVLIALCD+G+NPEALAAVVKEL++EPP
Sbjct: 1  MDPEAARTARESLDLAFHMSNILDTGLDRHTLSVLIALCDLGLNPEALAAVVKELQREPP 60

Query: 61 SSEAIISKNT 71
           S  + S ++
Sbjct: 61 PSTPLSSSSS 70

[Close]
BLAST of CmoCh01G009530 vs. TrEMBL
Match: B9T1I8_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0186670 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 2.4e-22
Identity = 55/65 (84.62%), Postives = 63/65 (96.92%), Query Frame = 1 

Query: 1  MDPEAARTARESLDLAFHISNILNTGIDRHTLSVLIALCDMGVNPEALAAVVKELRQEPP 60
          MDPEAA+TARESLDLAFH+SNIL+TG+DRHTLSVLIALCD+G+NPEALAAVVKELRQ+P 
Sbjct: 1  MDPEAAKTARESLDLAFHMSNILDTGLDRHTLSVLIALCDLGLNPEALAAVVKELRQQPS 60

Query: 61 SSEAI 66
          SS +I
Sbjct: 61 SSPSI 65

[Close]
BLAST of CmoCh01G009530 vs. TrEMBL
Match: A0A0B2PDD0_GLYSO (Mitotic-spindle organizing protein 1B OS=Glycine soja GN=glysoja_038443 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 4.0e-22
Identity = 57/73 (78.08%), Postives = 65/73 (89.04%), Query Frame = 1 

Query: 1  MDPEAARTARESLDLAFHISNILNTGIDRHTLSVLIALCDMGVNPEALAAVVKELRQEPP 60
          MDPEAARTARESLDLAFH+SNIL+TG+DRHTLSVLIALCD+GVNPEALAAVVKELR+E P
Sbjct: 1  MDPEAARTARESLDLAFHMSNILDTGLDRHTLSVLIALCDLGVNPEALAAVVKELRKEKP 60

Query: 61 SSEAIISKNTTSL 74
          S  + +    +SL
Sbjct: 61 SLSSSLPAAPSSL 73

[Close]
BLAST of CmoCh01G009530 vs. TrEMBL
Match: I1J6X9_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_01G100100 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 4.0e-22
Identity = 57/73 (78.08%), Postives = 65/73 (89.04%), Query Frame = 1 

Query: 1  MDPEAARTARESLDLAFHISNILNTGIDRHTLSVLIALCDMGVNPEALAAVVKELRQEPP 60
          MDPEAARTARESLDLAFH+SNIL+TG+DRHTLSVLIALCD+GVNPEALAAVVKELR+E P
Sbjct: 1  MDPEAARTARESLDLAFHMSNILDTGLDRHTLSVLIALCDLGVNPEALAAVVKELRKEKP 60

Query: 61 SSEAIISKNTTSL 74
          S  + +    +SL
Sbjct: 61 SLSSSLPAAPSSL 73

[Close]
BLAST of CmoCh01G009530 vs. TAIR10
Match: AT4G09550.1 (AT4G09550.1 AtGCP3 interacting protein 1)

HSP 1 Score: 96.3 bits (238), Expect = 8.9e-21
Identity = 47/58 (81.03%), Postives = 54/58 (93.10%), Query Frame = 1 

Query: 1  MDPEAARTARESLDLAFHISNILNTGIDRHTLSVLIALCDMGVNPEALAAVVKELRQE 59
          MD EA+RTARESL+L F +SNIL+TG+DRHTLSVLIALCD+GVNPEALA VVKELR+E
Sbjct: 1  MDEEASRTARESLELVFRMSNILDTGLDRHTLSVLIALCDLGVNPEALATVVKELRRE 58

[Close]
BLAST of CmoCh01G009530 vs. TAIR10
Match: AT1G73790.1 (AT1G73790.1 Protein of unknown function (DUF3743))

HSP 1 Score: 89.0 bits (219), Expect = 1.4e-18
Identity = 43/66 (65.15%), Postives = 55/66 (83.33%), Query Frame = 1 

Query: 1  MDPEAARTARESLDLAFHISNILNTGIDRHTLSVLIALCDMGVNPEALAAVVKELRQEPP 60
          M+ EAA TARESL+L F +SNIL TG+DRHTLSVLIALCD+G+NPEALA +VKELR++  
Sbjct: 1  MNQEAAETARESLELVFRMSNILETGLDRHTLSVLIALCDIGLNPEALATLVKELRRDSA 60

Query: 61 SSEAII 67
          ++   +
Sbjct: 61 TTTTTV 66

[Close]
BLAST of CmoCh01G009530 vs. NCBI nr
Match: gi|778668078|ref|XP_011649034.1| (PREDICTED: mitotic-spindle organizing protein 1A-like [Cucumis sativus])

HSP 1 Score: 119.8 bits (299), Expect = 2.1e-24
Identity = 59/69 (85.51%), Postives = 65/69 (94.20%), Query Frame = 1 

Query: 1  MDPEAARTARESLDLAFHISNILNTGIDRHTLSVLIALCDMGVNPEALAAVVKELRQEPP 60
          MD EAARTARESLDLAFH+SN+L+ GIDRHTLSVLIALCDMGVNPEALAAVVKELR+EPP
Sbjct: 1  MDQEAARTARESLDLAFHMSNVLDAGIDRHTLSVLIALCDMGVNPEALAAVVKELRREPP 60

Query: 61 SSEAIISKN 70
          SS+ I+S N
Sbjct: 61 SSDTIVSSN 69

[Close]
BLAST of CmoCh01G009530 vs. NCBI nr
Match: gi|659082266|ref|XP_008441751.1| (PREDICTED: mitotic-spindle organizing protein 1A-like [Cucumis melo])

HSP 1 Score: 118.6 bits (296), Expect = 4.7e-24
Identity = 59/69 (85.51%), Postives = 65/69 (94.20%), Query Frame = 1 

Query: 1  MDPEAARTARESLDLAFHISNILNTGIDRHTLSVLIALCDMGVNPEALAAVVKELRQEPP 60
          MD EAARTARESLDLAFH+SN+L++GIDRHTLSVLIALCDMGVNPEALAAVVKELR+EPP
Sbjct: 1  MDQEAARTARESLDLAFHMSNVLDSGIDRHTLSVLIALCDMGVNPEALAAVVKELRREPP 60

Query: 61 SSEAIISKN 70
          SSE  +S N
Sbjct: 61 SSETNVSSN 69

[Close]
BLAST of CmoCh01G009530 vs. NCBI nr
Match: gi|1000941381|ref|XP_015582673.1| (PREDICTED: mitotic-spindle organizing protein 1A [Ricinus communis])

HSP 1 Score: 112.5 bits (280), Expect = 3.4e-22
Identity = 55/65 (84.62%), Postives = 63/65 (96.92%), Query Frame = 1 

Query: 1  MDPEAARTARESLDLAFHISNILNTGIDRHTLSVLIALCDMGVNPEALAAVVKELRQEPP 60
          MDPEAA+TARESLDLAFH+SNIL+TG+DRHTLSVLIALCD+G+NPEALAAVVKELRQ+P 
Sbjct: 1  MDPEAAKTARESLDLAFHMSNILDTGLDRHTLSVLIALCDLGLNPEALAAVVKELRQQPS 60

Query: 61 SSEAI 66
          SS +I
Sbjct: 61 SSPSI 65

[Close]
BLAST of CmoCh01G009530 vs. NCBI nr
Match: gi|823215102|ref|XP_012440309.1| (PREDICTED: mitotic-spindle organizing protein 1B-like [Gossypium raimondii])

HSP 1 Score: 112.5 bits (280), Expect = 3.4e-22
Identity = 55/70 (78.57%), Postives = 65/70 (92.86%), Query Frame = 1 

Query: 1  MDPEAARTARESLDLAFHISNILNTGIDRHTLSVLIALCDMGVNPEALAAVVKELRQEPP 60
          MDPEAARTARESLDLAFH+SNIL+TG+DRHTLSVLIALCD+G+NPEALAAVVKEL++EPP
Sbjct: 1  MDPEAARTARESLDLAFHMSNILDTGLDRHTLSVLIALCDLGLNPEALAAVVKELQREPP 60

Query: 61 SSEAIISKNT 71
           S  + S ++
Sbjct: 61 PSTPLSSSSS 70

[Close]
BLAST of CmoCh01G009530 vs. NCBI nr
Match: gi|763785935|gb|KJB53006.1| (hypothetical protein B456_008G288400 [Gossypium raimondii])

HSP 1 Score: 112.5 bits (280), Expect = 3.4e-22
Identity = 55/70 (78.57%), Postives = 65/70 (92.86%), Query Frame = 1 

Query: 1  MDPEAARTARESLDLAFHISNILNTGIDRHTLSVLIALCDMGVNPEALAAVVKELRQEPP 60
          MDPEAARTARESLDLAFH+SNIL+TG+DRHTLSVLIALCD+G+NPEALAAVVKEL++EPP
Sbjct: 1  MDPEAARTARESLDLAFHMSNILDTGLDRHTLSVLIALCDLGLNPEALAAVVKELQREPP 60

Query: 61 SSEAIISKNT 71
           S  + S ++
Sbjct: 61 PSTPLSSSSS 70

The following BLAST results are available for this feature:
BLAST of CmoCh01G009530 vs. Swiss-Prot
Match NameE-valueIdentityDescription
MZT1B_ARATH1.6e-1981.03Mitotic-spindle organizing protein 1B OS=Arabidopsis thaliana GN=GIP1 PE=1 SV=1[more]
MZT1_PICSI5.1e-1879.31Mitotic-spindle organizing protein 1 OS=Picea sitchensis PE=3 SV=1[more]
MZT1A_ARATH2.5e-1765.15Mitotic-spindle organizing protein 1A OS=Arabidopsis thaliana GN=GIP2 PE=1 SV=1[more]
MZT1_TAEGU3.0e-1052.73Mitotic-spindle organizing protein 1 OS=Taeniopygia guttata GN=mzt1 PE=3 SV=1[more]
MZT1_MOUSE5.1e-1046.67Mitotic-spindle organizing protein 1 OS=Mus musculus GN=Mzt1 PE=1 SV=1[more]
BLAST of CmoCh01G009530 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LMZ6_CUCSA1.5e-2485.51Uncharacterized protein OS=Cucumis sativus GN=Csa_2G094370 PE=4 SV=1[more]
A0A0D2TES9_GOSRA2.4e-2278.57Uncharacterized protein OS=Gossypium raimondii GN=B456_008G288400 PE=4 SV=1[more]
B9T1I8_RICCO2.4e-2284.62Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0186670 PE=4 SV=1[more]
A0A0B2PDD0_GLYSO4.0e-2278.08Mitotic-spindle organizing protein 1B OS=Glycine soja GN=glysoja_038443 PE=4 SV=... [more]
I1J6X9_SOYBN4.0e-2278.08Uncharacterized protein OS=Glycine max GN=GLYMA_01G100100 PE=4 SV=1[more]
BLAST of CmoCh01G009530 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G09550.18.9e-2181.03 AtGCP3 interacting protein 1[more]
AT1G73790.11.4e-1865.15 Protein of unknown function (DUF3743)[more]
BLAST of CmoCh01G009530 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778668078|ref|XP_011649034.1|2.1e-2485.51PREDICTED: mitotic-spindle organizing protein 1A-like [Cucumis sativus][more]
gi|659082266|ref|XP_008441751.1|4.7e-2485.51PREDICTED: mitotic-spindle organizing protein 1A-like [Cucumis melo][more]
gi|1000941381|ref|XP_015582673.1|3.4e-2284.62PREDICTED: mitotic-spindle organizing protein 1A [Ricinus communis][more]
gi|823215102|ref|XP_012440309.1|3.4e-2278.57PREDICTED: mitotic-spindle organizing protein 1B-like [Gossypium raimondii][more]
gi|763785935|gb|KJB53006.1|3.4e-2278.57hypothetical protein B456_008G288400 [Gossypium raimondii][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR022214MZT1
Vocabulary: Cellular Component
TermDefinition
GO:0008274gamma-tubulin ring complex
Vocabulary: Biological Process
TermDefinition
GO:0033566gamma-tubulin complex localization
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0033566 gamma-tubulin complex localization
cellular_component GO:0008274 gamma-tubulin ring complex
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh01G009530.1CmoCh01G009530.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR022214Mitotic-spindle organizing protein 1PANTHERPTHR28520FAMILY NOT NAMEDcoord: 1..67
score: 9.1
IPR022214Mitotic-spindle organizing protein 1PFAMPF12554MOZART1coord: 10..56
score: 1.4

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh01G009530Carg27788Silver-seed gourdcarcmoB1010
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh01G009530Melon (DHL92) v3.6.1cmomedB462
CmoCh01G009530Cucumber (Chinese Long) v3cmocucB0566
CmoCh01G009530Watermelon (97103) v2cmowmbB484
CmoCh01G009530Watermelon (97103) v2cmowmbB498
CmoCh01G009530Wax gourdcmowgoB0571
CmoCh01G009530Wax gourdcmowgoB0621
CmoCh01G009530Cucumber (Gy14) v1cgycmoB1003
CmoCh01G009530Cucurbita maxima (Rimu)cmacmoB468
CmoCh01G009530Cucurbita maxima (Rimu)cmacmoB471
CmoCh01G009530Wild cucumber (PI 183967)cmocpiB477
CmoCh01G009530Cucumber (Chinese Long) v2cmocuB473
CmoCh01G009530Melon (DHL92) v3.5.1cmomeB401
CmoCh01G009530Watermelon (Charleston Gray)cmowcgB379
CmoCh01G009530Watermelon (Charleston Gray)cmowcgB429
CmoCh01G009530Watermelon (97103) v1cmowmB405
CmoCh01G009530Cucurbita pepo (Zucchini)cmocpeB448
CmoCh01G009530Bottle gourd (USVL1VR-Ls)cmolsiB397
CmoCh01G009530Bottle gourd (USVL1VR-Ls)cmolsiB440
CmoCh01G009530Cucumber (Gy14) v2cgybcmoB753