CmoCh01G008980 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh01G008980
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
Description(Retrovirus-related Pol polyprotein from transposon TNT 1-94) (3.1.13.-)
LocationCmo_Chr01 : 4992707 .. 4993339 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTACCCGAGACGCAGGTTGTGGAGAAAATCTTGAGGTCGTTAACAGACAACTTCGAGAATGTTGTGTGTGCCATAGAAGAGTCGAAGGACCTAGCGAAGTTCACAGTCGATGAGCTTGCCGGTTCTCTCGAGGCACACGAGCAACGCAAGAAAAAGGAGGAGGAGCCGCTCGATCAAGCGCTTCAAAAGAAGGCATCAATAAAGGATGGAAAGATACTCTACTCACAGAATTTTCGAGGTAGAGATAGTGGAAGCCGCGGGAATGGTCGAGCTACTCAAGGCAATAGTCACGAAGAAAACTACCATGAGAAGAGACTGTCGAGCCAAGCAAATTGGCGTGGAAGAGGACGCAATCAAGAGTGCGGTCAAGGATACAATTTCAACGTCCAGTGCTATAAATGTCAGAAATATGACCACTATGCAAATAATTGTAACTCCGACAGATGTTACAATTGTGGCAGAATGGGTCACTATGCAAGAGATTGTCGAACCAAAGAGAAGGTGGAAGAATCCATCAACCTAGCCTTGGATGACACAACAAATGGAGGCATCCTCTTGATGGCCCAAAACAAAGAGACAAATACAAAAGGAGACGGCGGTGCGAAGACAATGGCGATAGTCGTGAGGTAG

mRNA sequence

ATGTTACCCGAGACGCAGGTTGTGGAGAAAATCTTGAGGTCGTTAACAGACAACTTCGAGAATGTTGTGTGTGCCATAGAAGAGTCGAAGGACCTAGCGAAGTTCACAGTCGATGAGCTTGCCGGTTCTCTCGAGGCACACGAGCAACGCAAGAAAAAGGAGGAGGAGCCGCTCGATCAAGCGCTTCAAAAGAAGGCATCAATAAAGGATGGAAAGATACTCTACTCACAGAATTTTCGAGGTAGAGATAGTGGAAGCCGCGGGAATGGTCGAGCTACTCAAGGCAATAGTCACGAAGAAAACTACCATGAGAAGAGACTGTCGAGCCAAGCAAATTGGCGTGGAAGAGGACGCAATCAAGAGTGCGGTCAAGGATACAATTTCAACGTCCAGTGCTATAAATGTCAGAAATATGACCACTATGCAAATAATTGTAACTCCGACAGATGTTACAATTGTGGCAGAATGGGTCACTATGCAAGAGATTGTCGAACCAAAGAGAAGGTGGAAGAATCCATCAACCTAGCCTTGGATGACACAACAAATGGAGGCATCCTCTTGATGGCCCAAAACAAAGAGACAAATACAAAAGGAGACGGCGGTGCGAAGACAATGGCGATAGTCGTGAGGTAG

Coding sequence (CDS)

ATGTTACCCGAGACGCAGGTTGTGGAGAAAATCTTGAGGTCGTTAACAGACAACTTCGAGAATGTTGTGTGTGCCATAGAAGAGTCGAAGGACCTAGCGAAGTTCACAGTCGATGAGCTTGCCGGTTCTCTCGAGGCACACGAGCAACGCAAGAAAAAGGAGGAGGAGCCGCTCGATCAAGCGCTTCAAAAGAAGGCATCAATAAAGGATGGAAAGATACTCTACTCACAGAATTTTCGAGGTAGAGATAGTGGAAGCCGCGGGAATGGTCGAGCTACTCAAGGCAATAGTCACGAAGAAAACTACCATGAGAAGAGACTGTCGAGCCAAGCAAATTGGCGTGGAAGAGGACGCAATCAAGAGTGCGGTCAAGGATACAATTTCAACGTCCAGTGCTATAAATGTCAGAAATATGACCACTATGCAAATAATTGTAACTCCGACAGATGTTACAATTGTGGCAGAATGGGTCACTATGCAAGAGATTGTCGAACCAAAGAGAAGGTGGAAGAATCCATCAACCTAGCCTTGGATGACACAACAAATGGAGGCATCCTCTTGATGGCCCAAAACAAAGAGACAAATACAAAAGGAGACGGCGGTGCGAAGACAATGGCGATAGTCGTGAGGTAG
Homology
[Close]
BLAST of CmoCh01G008980 vs. TrEMBL
Match: A0A059QBK0_PHAVU (Polyprotein OS=Phaseolus vulgaris PE=4 SV=1)

HSP 1 Score: 245.4 bits (625), Expect = 6.4e-62
Identity = 132/202 (65.35%), Postives = 159/202 (78.71%), Query Frame = 1 

Query: 2   LPETQVVEKILRSLTDNFENVVCAIEESKDLAKFTVDELAGSLEAHEQRKKKE-EEPLDQ 61
           L + +VVEKILR+LTDNFE++VCAIEESKDLA  TVDELAGSLEAHEQRKKK+ EE L+Q
Sbjct: 153 LTDARVVEKILRTLTDNFESIVCAIEESKDLATLTVDELAGSLEAHEQRKKKKKEETLEQ 212

Query: 62  ALQKKASIKDGKILYSQN--FRGRDSGSRGNGRATQGNSHEENYHEKRLSSQANWRGRGR 121
           ALQ KASIKD K+LY QN  +RGR  GSRGNGR  +G++HE  Y EK  SSQ NWRGRGR
Sbjct: 213 ALQTKASIKDEKVLYHQNSQYRGRGRGSRGNGRGGKGSNHEGYYKEKEQSSQPNWRGRGR 272

Query: 122 NQECGQGYNF-NVQCYKCQKYDHYANNCNSDRCYNCGRMGHYARDCRTKEKVEESINLAL 181
            +  G   N+ N++CYKC KY HYA +CNSD+CYNCG++GH+A+DCR   K+EE+ NLAL
Sbjct: 273 GRGRGGRSNYSNIECYKCHKYGHYAKDCNSDKCYNCGKVGHFAKDCRADIKIEETTNLAL 332

Query: 182 DDTTNGGILLMAQNKETNTKGD 200
           +  TN G+LLMAQ+ E N   D
Sbjct: 333 EVETNEGVLLMAQD-EVNINND 353

[Close]
BLAST of CmoCh01G008980 vs. TrEMBL
Match: A0A151QX97_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) OS=Cajanus cajan GN=KK1_044011 PE=4 SV=1)

HSP 1 Score: 189.9 bits (481), Expect = 3.2e-45
Identity = 108/199 (54.27%), Postives = 131/199 (65.83%), Query Frame = 1 

Query: 2   LPETQVVEKILRSLTDNFENVVCAIEESKDLAKFTVDELAGSLEAHEQR-KKKEEEPLDQ 61
           L   +VVEKILR LTD+FENV+CAIEESKDL+  TVDELAGSLEAHEQR KKK+EE L+Q
Sbjct: 4   LTNVRVVEKILRLLTDSFENVICAIEESKDLSMLTVDELAGSLEAHEQRKKKKKEEILEQ 63

Query: 62  ALQKKASIKDGKILYSQNFRGRDSGSRGNGRATQGNSHEENYHEKRLSSQANWRGRGRNQ 121
           ALQ KASIKD K LYSQN RGR  G  G                     +A WRG   N 
Sbjct: 64  ALQIKASIKDEKTLYSQNIRGRGCGRGG---------------------RARWRGDRTNY 123

Query: 122 ECGQGYNFNVQCYKCQKYDHYANNCNSDRCYNCGRMGHYARDCRTKEKVEESINLALDDT 181
                  FNV+CYKC KY HYA +CNSD+CYNCG++GH+A++CR ++KVEE+ NL  +D 
Sbjct: 124 -------FNVKCYKCGKYGHYAKDCNSDKCYNCGKVGHFAKECRVEKKVEETTNLITEDE 174

Query: 182 TNGGILLMAQNKETNTKGD 200
               I L+  + E N+  +
Sbjct: 184 EAKEIFLLMAHNEVNSNNN 174

[Close]
BLAST of CmoCh01G008980 vs. TrEMBL
Match: A0A151T3L7_CAJCA (Gag-Pol polyprotein OS=Cajanus cajan GN=KK1_016136 PE=4 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 2.4e-37
Identity = 105/222 (47.30%), Postives = 134/222 (60.36%), Query Frame = 1 

Query: 2   LPETQVVEKILRSLTDNFENVVCAIEESKDLAKFTVDELAGSLEAHEQRKKKEE---EPL 61
           LP ++VVEKILRSLTD+FEN+VCAIEESKDL+  TV+EL GSLEA+EQRKK ++   E L
Sbjct: 128 LPSSRVVEKILRSLTDDFENIVCAIEESKDLSTLTVEELTGSLEAYEQRKKNKKEKGESL 187

Query: 62  DQALQKKASIKDGKILYSQNFRGRDSGS--RGNGRATQGNSHEENYHEKRLSSQANWRGR 121
           +QALQ KA+IKD K+LY+QN RGR  G    G GR  +GN +           Q NWRGR
Sbjct: 188 EQALQAKATIKDEKVLYAQNNRGRGRGRGLGGGGRGGRGNEY---------VGQQNWRGR 247

Query: 122 -------------------GRNQECGQGYNFN--VQCYKCQKYDHYANNCNSDRCYNCGR 181
                              GR Q  G   N N  ++CY C KY H A  C S +CYNCG 
Sbjct: 248 GQARGGRGQARGGRGQARGGRGQTWGGRLNTNNSIECYNCGKYGHVAKECYSIKCYNCGN 307

Query: 182 MGHYARDCRTKEKVEESINLALDDTTNGGILLMAQNKETNTK 198
           +GH ++D R+++K EE+ N  L +  + G+LL+    E   K
Sbjct: 308 LGHISKDGRSEKKREETTNF-LAEEEDEGLLLVTTIPEAEIK 339

[Close]
BLAST of CmoCh01G008980 vs. TrEMBL
Match: A0A151SMJ1_CAJCA (Gag polyprotein OS=Cajanus cajan GN=KK1_002198 PE=4 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 7.1e-37
Identity = 94/191 (49.21%), Postives = 127/191 (66.49%), Query Frame = 1 

Query: 5   TQVVEKILRSLTDNFENVVCAIEESKDLAKFTVDELAGSLEAHEQRKKKEE-EPLDQALQ 64
           ++VVEKILRSLT +F+N+VCAIEESKDL+  TV+ELAGSLEAHEQR+KK + E L+Q+LQ
Sbjct: 125 SRVVEKILRSLTYDFKNIVCAIEESKDLSTLTVEELAGSLEAHEQRRKKNKGESLEQSLQ 184

Query: 65  KKASIKDGKILYSQNFRGRDSGSRGNGRATQGNSHEENYHEKRLSSQANWRGRGRNQECG 124
            KA+IK+ K+LY+Q+ RGR  G    GR   G  +E    + R        GRG+     
Sbjct: 185 AKATIKEEKVLYAQSTRGRGRGRGLGGRGRGGRDNEHVSQQARRGRGQARGGRGQTWGGR 244

Query: 125 QGYNFNVQCYKCQKYDHYANNCNSDRCYNCGRMGHYARDCRTKEKVEESINLALDDTTNG 184
              N N++CY C KY H A +C S +CYNCG +GH ++DCR+++K EE  N  L +  + 
Sbjct: 245 SNINNNIECYNCGKYGHVAKDCYSIKCYNCGNLGHISKDCRSEKKKEEPTNF-LAEEEDE 304

Query: 185 GILLMAQNKET 195
           G+LL+    ET
Sbjct: 305 GLLLVTTIPET 314

[Close]
BLAST of CmoCh01G008980 vs. TrEMBL
Match: A0A151TA96_CAJCA (Gag polyprotein OS=Cajanus cajan GN=KK1_018540 PE=4 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 7.1e-37
Identity = 98/199 (49.25%), Postives = 126/199 (63.32%), Query Frame = 1 

Query: 2   LPETQVVEKILRSLTDNFENVVCAIEESKDLAKFTVDELAGSLEAHEQRKKKEE---EPL 61
           LP ++VVEKILRSLTD+FEN+VCAIEESKDL+  TV+EL GSLEA+EQRKK ++   E L
Sbjct: 153 LPSSRVVEKILRSLTDDFENIVCAIEESKDLSTLTVEELTGSLEAYEQRKKNKKEKGESL 212

Query: 62  DQALQKKASIKDGKILYSQNFRGRDSGSRGNGRATQGNSHEENYHEKRLSSQANWRGRGR 121
           +QALQ KA+IK+ K+LY+QN RGR  G RG G+                     W GR  
Sbjct: 213 EQALQAKATIKEEKVLYAQNNRGRGRG-RGLGQ--------------------TWGGRSN 272

Query: 122 NQECGQGYNFNVQCYKCQKYDHYANNCNSDRCYNCGRMGHYARDCRTKEKVEESINLALD 181
                   N N++CY C KY H A  C S +CYNCG +GH ++DCR+++K EES N  L 
Sbjct: 273 T-------NNNIECYNCGKYGHVAKECYSIKCYNCGNLGHISKDCRSEKKKEESTNF-LA 322

Query: 182 DTTNGGILLMAQNKETNTK 198
           +  + G+LL+    ET  K
Sbjct: 333 EEEDEGLLLVTTIPETEIK 322

[Close]
BLAST of CmoCh01G008980 vs. NCBI nr
Match: gi|545693870|gb|AGW47867.1| (polyprotein [Phaseolus vulgaris])

HSP 1 Score: 245.4 bits (625), Expect = 9.1e-62
Identity = 132/202 (65.35%), Postives = 159/202 (78.71%), Query Frame = 1 

Query: 2   LPETQVVEKILRSLTDNFENVVCAIEESKDLAKFTVDELAGSLEAHEQRKKKE-EEPLDQ 61
           L + +VVEKILR+LTDNFE++VCAIEESKDLA  TVDELAGSLEAHEQRKKK+ EE L+Q
Sbjct: 153 LTDARVVEKILRTLTDNFESIVCAIEESKDLATLTVDELAGSLEAHEQRKKKKKEETLEQ 212

Query: 62  ALQKKASIKDGKILYSQN--FRGRDSGSRGNGRATQGNSHEENYHEKRLSSQANWRGRGR 121
           ALQ KASIKD K+LY QN  +RGR  GSRGNGR  +G++HE  Y EK  SSQ NWRGRGR
Sbjct: 213 ALQTKASIKDEKVLYHQNSQYRGRGRGSRGNGRGGKGSNHEGYYKEKEQSSQPNWRGRGR 272

Query: 122 NQECGQGYNF-NVQCYKCQKYDHYANNCNSDRCYNCGRMGHYARDCRTKEKVEESINLAL 181
            +  G   N+ N++CYKC KY HYA +CNSD+CYNCG++GH+A+DCR   K+EE+ NLAL
Sbjct: 273 GRGRGGRSNYSNIECYKCHKYGHYAKDCNSDKCYNCGKVGHFAKDCRADIKIEETTNLAL 332

Query: 182 DDTTNGGILLMAQNKETNTKGD 200
           +  TN G+LLMAQ+ E N   D
Sbjct: 333 EVETNEGVLLMAQD-EVNINND 353

[Close]
BLAST of CmoCh01G008980 vs. NCBI nr
Match: gi|1012322726|gb|KYP34977.1| (Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial [Cajanus cajan])

HSP 1 Score: 189.9 bits (481), Expect = 4.6e-45
Identity = 108/199 (54.27%), Postives = 131/199 (65.83%), Query Frame = 1 

Query: 2   LPETQVVEKILRSLTDNFENVVCAIEESKDLAKFTVDELAGSLEAHEQR-KKKEEEPLDQ 61
           L   +VVEKILR LTD+FENV+CAIEESKDL+  TVDELAGSLEAHEQR KKK+EE L+Q
Sbjct: 4   LTNVRVVEKILRLLTDSFENVICAIEESKDLSMLTVDELAGSLEAHEQRKKKKKEEILEQ 63

Query: 62  ALQKKASIKDGKILYSQNFRGRDSGSRGNGRATQGNSHEENYHEKRLSSQANWRGRGRNQ 121
           ALQ KASIKD K LYSQN RGR  G  G                     +A WRG   N 
Sbjct: 64  ALQIKASIKDEKTLYSQNIRGRGCGRGG---------------------RARWRGDRTNY 123

Query: 122 ECGQGYNFNVQCYKCQKYDHYANNCNSDRCYNCGRMGHYARDCRTKEKVEESINLALDDT 181
                  FNV+CYKC KY HYA +CNSD+CYNCG++GH+A++CR ++KVEE+ NL  +D 
Sbjct: 124 -------FNVKCYKCGKYGHYAKDCNSDKCYNCGKVGHFAKECRVEKKVEETTNLITEDE 174

Query: 182 TNGGILLMAQNKETNTKGD 200
               I L+  + E N+  +
Sbjct: 184 EAKEIFLLMAHNEVNSNNN 174

[Close]
BLAST of CmoCh01G008980 vs. NCBI nr
Match: gi|1012350441|gb|KYP61630.1| (Gag-Pol polyprotein [Cajanus cajan])

HSP 1 Score: 163.7 bits (413), Expect = 3.5e-37
Identity = 105/222 (47.30%), Postives = 134/222 (60.36%), Query Frame = 1 

Query: 2   LPETQVVEKILRSLTDNFENVVCAIEESKDLAKFTVDELAGSLEAHEQRKKKEE---EPL 61
           LP ++VVEKILRSLTD+FEN+VCAIEESKDL+  TV+EL GSLEA+EQRKK ++   E L
Sbjct: 128 LPSSRVVEKILRSLTDDFENIVCAIEESKDLSTLTVEELTGSLEAYEQRKKNKKEKGESL 187

Query: 62  DQALQKKASIKDGKILYSQNFRGRDSGS--RGNGRATQGNSHEENYHEKRLSSQANWRGR 121
           +QALQ KA+IKD K+LY+QN RGR  G    G GR  +GN +           Q NWRGR
Sbjct: 188 EQALQAKATIKDEKVLYAQNNRGRGRGRGLGGGGRGGRGNEY---------VGQQNWRGR 247

Query: 122 -------------------GRNQECGQGYNFN--VQCYKCQKYDHYANNCNSDRCYNCGR 181
                              GR Q  G   N N  ++CY C KY H A  C S +CYNCG 
Sbjct: 248 GQARGGRGQARGGRGQARGGRGQTWGGRLNTNNSIECYNCGKYGHVAKECYSIKCYNCGN 307

Query: 182 MGHYARDCRTKEKVEESINLALDDTTNGGILLMAQNKETNTK 198
           +GH ++D R+++K EE+ N  L +  + G+LL+    E   K
Sbjct: 308 LGHISKDGRSEKKREETTNF-LAEEEDEGLLLVTTIPEAEIK 339

[Close]
BLAST of CmoCh01G008980 vs. NCBI nr
Match: gi|1012344779|gb|KYP55971.1| (Gag polyprotein [Cajanus cajan])

HSP 1 Score: 162.2 bits (409), Expect = 1.0e-36
Identity = 94/191 (49.21%), Postives = 127/191 (66.49%), Query Frame = 1 

Query: 5   TQVVEKILRSLTDNFENVVCAIEESKDLAKFTVDELAGSLEAHEQRKKKEE-EPLDQALQ 64
           ++VVEKILRSLT +F+N+VCAIEESKDL+  TV+ELAGSLEAHEQR+KK + E L+Q+LQ
Sbjct: 125 SRVVEKILRSLTYDFKNIVCAIEESKDLSTLTVEELAGSLEAHEQRRKKNKGESLEQSLQ 184

Query: 65  KKASIKDGKILYSQNFRGRDSGSRGNGRATQGNSHEENYHEKRLSSQANWRGRGRNQECG 124
            KA+IK+ K+LY+Q+ RGR  G    GR   G  +E    + R        GRG+     
Sbjct: 185 AKATIKEEKVLYAQSTRGRGRGRGLGGRGRGGRDNEHVSQQARRGRGQARGGRGQTWGGR 244

Query: 125 QGYNFNVQCYKCQKYDHYANNCNSDRCYNCGRMGHYARDCRTKEKVEESINLALDDTTNG 184
              N N++CY C KY H A +C S +CYNCG +GH ++DCR+++K EE  N  L +  + 
Sbjct: 245 SNINNNIECYNCGKYGHVAKDCYSIKCYNCGNLGHISKDCRSEKKKEEPTNF-LAEEEDE 304

Query: 185 GILLMAQNKET 195
           G+LL+    ET
Sbjct: 305 GLLLVTTIPET 314

[Close]
BLAST of CmoCh01G008980 vs. NCBI nr
Match: gi|1012352765|gb|KYP63953.1| (Gag polyprotein [Cajanus cajan])

HSP 1 Score: 162.2 bits (409), Expect = 1.0e-36
Identity = 98/199 (49.25%), Postives = 126/199 (63.32%), Query Frame = 1 

Query: 2   LPETQVVEKILRSLTDNFENVVCAIEESKDLAKFTVDELAGSLEAHEQRKKKEE---EPL 61
           LP ++VVEKILRSLTD+FEN+VCAIEESKDL+  TV+EL GSLEA+EQRKK ++   E L
Sbjct: 153 LPSSRVVEKILRSLTDDFENIVCAIEESKDLSTLTVEELTGSLEAYEQRKKNKKEKGESL 212

Query: 62  DQALQKKASIKDGKILYSQNFRGRDSGSRGNGRATQGNSHEENYHEKRLSSQANWRGRGR 121
           +QALQ KA+IK+ K+LY+QN RGR  G RG G+                     W GR  
Sbjct: 213 EQALQAKATIKEEKVLYAQNNRGRGRG-RGLGQ--------------------TWGGRSN 272

Query: 122 NQECGQGYNFNVQCYKCQKYDHYANNCNSDRCYNCGRMGHYARDCRTKEKVEESINLALD 181
                   N N++CY C KY H A  C S +CYNCG +GH ++DCR+++K EES N  L 
Sbjct: 273 T-------NNNIECYNCGKYGHVAKECYSIKCYNCGNLGHISKDCRSEKKKEESTNF-LA 322

Query: 182 DTTNGGILLMAQNKETNTK 198
           +  + G+LL+    ET  K
Sbjct: 333 EEEDEGLLLVTTIPETEIK 322

The following BLAST results are available for this feature:
BLAST of CmoCh01G008980 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh01G008980 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A059QBK0_PHAVU6.4e-6265.35Polyprotein OS=Phaseolus vulgaris PE=4 SV=1[more]
A0A151QX97_CAJCA3.2e-4554.27Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) OS=Cajanu... [more]
A0A151T3L7_CAJCA2.4e-3747.30Gag-Pol polyprotein OS=Cajanus cajan GN=KK1_016136 PE=4 SV=1[more]
A0A151SMJ1_CAJCA7.1e-3749.21Gag polyprotein OS=Cajanus cajan GN=KK1_002198 PE=4 SV=1[more]
A0A151TA96_CAJCA7.1e-3749.25Gag polyprotein OS=Cajanus cajan GN=KK1_018540 PE=4 SV=1[more]
BLAST of CmoCh01G008980 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmoCh01G008980 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|545693870|gb|AGW47867.1|9.1e-6265.35polyprotein [Phaseolus vulgaris][more]
gi|1012322726|gb|KYP34977.1|4.6e-4554.27Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial [Cajanus ca... [more]
gi|1012350441|gb|KYP61630.1|3.5e-3747.30Gag-Pol polyprotein [Cajanus cajan][more]
gi|1012344779|gb|KYP55971.1|1.0e-3649.21Gag polyprotein [Cajanus cajan][more]
gi|1012352765|gb|KYP63953.1|1.0e-3649.25Gag polyprotein [Cajanus cajan][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001878Znf_CCHC
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0008270zinc ion binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh01G008980.1CmoCh01G008980.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001878Zinc finger, CCHC-typeGENE3DG3DSA:4.10.60.10coord: 130..165
score: 7.0
IPR001878Zinc finger, CCHC-typePFAMPF00098zf-CCHCcoord: 131..146
score: 6.8E-4coord: 149..164
score: 1.
IPR001878Zinc finger, CCHC-typeSMARTSM00343c2hcfinal6coord: 149..165
score: 2.0E-5coord: 131..147
score: 0
IPR001878Zinc finger, CCHC-typePROFILEPS50158ZF_CCHCcoord: 149..164
score: 11
IPR001878Zinc finger, CCHC-typeunknownSSF57756Retrovirus zinc finger-like domainscoord: 127..166
score: 1.7
NoneNo IPR availableunknownCoilCoilcoord: 44..64
scor
NoneNo IPR availablePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 4..146
score: 4.6
NoneNo IPR availablePANTHERPTHR11439:SF173SUBFAMILY NOT NAMEDcoord: 4..146
score: 4.6
NoneNo IPR availablePFAMPF14223Retrotran_gag_2coord: 2..53
score: 2.

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh01G008980Cucumber (Chinese Long) v3cmocucB0565
CmoCh01G008980Watermelon (97103) v2cmowmbB481
CmoCh01G008980Watermelon (97103) v2cmowmbB482
CmoCh01G008980Wax gourdcmowgoB0553
CmoCh01G008980Cucurbita moschata (Rifu)cmocmoB021
CmoCh01G008980Cucumber (Gy14) v1cgycmoB0661
CmoCh01G008980Cucurbita maxima (Rimu)cmacmoB056
CmoCh01G008980Cucurbita maxima (Rimu)cmacmoB468
CmoCh01G008980Wild cucumber (PI 183967)cmocpiB476
CmoCh01G008980Cucumber (Chinese Long) v2cmocuB472
CmoCh01G008980Melon (DHL92) v3.5.1cmomeB375
CmoCh01G008980Watermelon (Charleston Gray)cmowcgB429
CmoCh01G008980Watermelon (Charleston Gray)cmowcgB430
CmoCh01G008980Watermelon (97103) v1cmowmB411
CmoCh01G008980Watermelon (97103) v1cmowmB412
CmoCh01G008980Cucurbita pepo (Zucchini)cmocpeB448
CmoCh01G008980Cucurbita pepo (Zucchini)cmocpeB468
CmoCh01G008980Bottle gourd (USVL1VR-Ls)cmolsiB440
CmoCh01G008980Cucumber (Gy14) v2cgybcmoB611
CmoCh01G008980Melon (DHL92) v3.6.1cmomedB431
CmoCh01G008980Silver-seed gourdcarcmoB0230