CmoCh01G008970 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh01G008970
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	Cmo_Chr01 : 4990470 .. 4992421 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATAGCAGAAAGACAAGTTGATAACTATGTTCAGCCCGCCATTTCGAGATTAGATGGTCACTATGATCATTGGGCGATGTTGATGGAAAATTTTCTCAGATCAAAGGAGTTCTTTGATATGATGGAGACGTGTAGAGCCAAATGAAGGTGAGGTACTCTTAGTTGTTCAACAGCAACGGTTGGCAGCATCGAAGTTGAAGGACCTGAAGGTCAAGAATTACTTATTCCAGTCCATTGATCGAACTATATTGGAAACGATGCTTCAGAAGAAGACATCCAAGGAAATTGGGGATTCAATGAGGAGGAAGTATCAAGTCTCAACGAGAGTAAAGCATGCTCAACTTCAAGCAGTTAGAAGAGACTTTGAAAATTTTCAAATGCAAAAGGGAGAAATGGCCAATGATTATATTGGCAAGGTTATGAGTCTTGCAAGTAAAATGAGGATGCATGGTGTTTCAATCACGGATGTTGCAGTTGTAGAAAAGATTTTGTGATCTCTAACTCCAAAGTTCAATTATATTGTATGTTCTATTGAAGAAGCAAACAATGTCGAAGAAATGCAAATAGATGAACTTCAAAGCTCCTTACTAGTGCATGAGCAGAAGCTTAATCACACAAGTGCAATAGAGGAGATAAAAGCCTTAAAGATATCCACACCAGGTGAAGCTTCAAGCTCCAGAAGTAGAGGGCAAAGAAGAGGCAGAGGTCATGGAAGAGGCGGTCGAGAAAAAAATGGATACGTTGGCAAGTCAGCAGATCTAGTCAGAGACGATTATGACAACAAAGGTAAGAGACATTTTGACAAGTCTAAGGTGGAATGCTACAGATGTGGACGCCCTGAACATTACAAGAATGAATGTTATACCAGGCTCAAAAAGGAGAAAAGAGATCAATCTAACTTTGCAGAGTAAAGAGAAGAAGAAACATTGTTAATGTCATTCCATGCAATGAAGATTGCAGATCAAGGAGTGTGGGTCGTAGACTCTGGATGCAGCAACCATATGATAGGTTGTAAGGAATTCTTCTCAACTCTAGATGAAAATTTTTGTACCACTGTTTGTCTTGGCAACAATGCAACAGTCCAAGTGATCGGAAAGGAACAGTAGATATCAAGACTAGAAATGGCTTTGTAGAATCAATTTCTAATGTGTTCTACATTTCTGATCTGGAGGTCAACTTGCTTAGTATTGGTCAATTGCAAGAAAAGGGGTATGTGATCACATTTCAAAATAATGAATGTGAGATTTATGACTCTAGAAGAGGATCGATTGCTAAGATACAGATGACCACGAATCGCTTATATCCATTGAAGCTAAATATAGTTGCTAGAAGTTTGATGGTGAAGAAAAAAGTGTTGAGAAATAAACTTAAATGTAAATGTAGGAGAGAGAAAAAAAAAGTAATTATGAATTTGTTTTGGTTTTAAATTCGGTGAAAAAGCCATTACTGAGAAATAGAGAGAATAGTGATGGGGGCAGTTATGGCTAAACTTAGCTCGAAAAAATTATAAGAGAGAGAAAACAACAAGCGAGAACAAGAAACAACAACAGAGAGCAGCACAGCAAACTTGTCTGAGTTAGTGTGTAATACAAAAAACCTTTGGAGAACTTCTTTGTCTCCTTGTCTCTCCCCTTTCGACACCCCCTTTAAAGTTTCGTGAGAATTATCTAAACGAGTTAGATTCAGAGCGAGCATTTTTTCTCTCAAGTTGGTATCGGAGCAGCTTTATTTTTCTACAAATTGGTATCCGAGCAATTTATTTTCTACAAATTGGTATCAGAGCTGATGGCGAACATGATGGGACAAATGCCGCTACCACGATTGACGAAGACGAACTACGAGAATTGGAGCATCCAAATGAAAGCTCTTCTTGATTTGCAAGACGCATGGGAGGTGGTCGAAGACGCTTTCAAAGAACCGATTGATACCACGGGTTATACGGTGGCGTAA

mRNA sequence

ATGATAGCAGAAAGACAAGTTGATAACTATGTTCAGCCCGCCATTTCGAGATTAGATGAGCCAAATGAAGGTGAGGTACTCTTAGTTGTTCAACAGCAACGGTTGGCAGCATCGAAGTTGAAGGACCTGAAGGTCAAGAATTACTTATTCCAGTCCATTGATCGAACTATATTGGAAACGATGCTTCAGAAGAAGACATCCAAGGAAATTGGGGATTCAATGAGGAGGAAGTATCAAGTCTCAACGAGAGTAAAGCATGCTCAACTTCAAGCAGTTAGAAGAGACTTTGAAAATTTTCAAATGCAAAAGGGAGAAATGGCCAATGATTATATTGGCAAGTTCAATTATATTGTATGTTCTATTGAAGAAGCAAACAATGTCGAAGAAATGCAAATAGATGAACTTCAAAGCTCCTTACTAGTGCATGAGCAGAAGCTTAATCACACAAGTGCAATAGAGGAGATAAAAGCCTTAAAGATATCCACACCAGGTGAAGCTTCAAGCTCCAGAAGTAGAGGGCAAAGAAGAGGCAGAGGTCATGGAAGAGGCGGTCGAGAAAAAAATGGATACGTTGGCAAGTCAGCAGATCTAGTCAGAGACGATTATGACAACAAAGAGCTGATGGCGAACATGATGGGACAAATGCCGCTACCACGATTGACGAAGACGAACTACGAGAATTGGAGCATCCAAATGAAAGCTCTTCTTGATTTGCAAGACGCATGGGAGGTGGTCGAAGACGCTTTCAAAGAACCGATTGATACCACGGGTTATACGGTGGCGTAA

Coding sequence (CDS)

ATGATAGCAGAAAGACAAGTTGATAACTATGTTCAGCCCGCCATTTCGAGATTAGATGAGCCAAATGAAGGTGAGGTACTCTTAGTTGTTCAACAGCAACGGTTGGCAGCATCGAAGTTGAAGGACCTGAAGGTCAAGAATTACTTATTCCAGTCCATTGATCGAACTATATTGGAAACGATGCTTCAGAAGAAGACATCCAAGGAAATTGGGGATTCAATGAGGAGGAAGTATCAAGTCTCAACGAGAGTAAAGCATGCTCAACTTCAAGCAGTTAGAAGAGACTTTGAAAATTTTCAAATGCAAAAGGGAGAAATGGCCAATGATTATATTGGCAAGTTCAATTATATTGTATGTTCTATTGAAGAAGCAAACAATGTCGAAGAAATGCAAATAGATGAACTTCAAAGCTCCTTACTAGTGCATGAGCAGAAGCTTAATCACACAAGTGCAATAGAGGAGATAAAAGCCTTAAAGATATCCACACCAGGTGAAGCTTCAAGCTCCAGAAGTAGAGGGCAAAGAAGAGGCAGAGGTCATGGAAGAGGCGGTCGAGAAAAAAATGGATACGTTGGCAAGTCAGCAGATCTAGTCAGAGACGATTATGACAACAAAGAGCTGATGGCGAACATGATGGGACAAATGCCGCTACCACGATTGACGAAGACGAACTACGAGAATTGGAGCATCCAAATGAAAGCTCTTCTTGATTTGCAAGACGCATGGGAGGTGGTCGAAGACGCTTTCAAAGAACCGATTGATACCACGGGTTATACGGTGGCGTAA

Homology

[Close]

BLAST of CmoCh01G008970 vs. TrEMBL
Match: M5VYN8_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppb015139mg PE=4 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 1.1e-39
Identity = 111/219 (50.68%), Postives = 138/219 (63.01%), Query Frame = 1


Query: 16  SRLDEPNEGEVLLVVQQQRLAASKLKDLKVKNYLFQSIDRTILETMLQKKTSKEIGDSMR 75
           S +D P EG VL   QQ+R+A  KLKDL+VKNYLFQ++DR+ILET+L+K+TSK+I DS++
Sbjct: 48  SGIDAPAEGVVLTEQQQKRVAEQKLKDLRVKNYLFQALDRSILETILEKETSKQIWDSLK 107

Query: 76  RKYQVSTRVKHAQLQAVRRDFENFQMQKGEMANDYIG----------------------- 135
           +KY  S RVK A LQ + +DFE  QM+ GE   D+                         
Sbjct: 108 KKYAGSERVKRAVLQTLTKDFETLQMKSGESITDFFARTLGIASKMRSNGGTMEEVKVVE 167

Query: 136 --------KFNYIVCSIEEANNVEEMQIDELQSSLLVHEQKLNHTSAIEEIKALKISTPG 195
                   KF+YIVCSIEEA NV E+++DELQSSLLVHEQ+LN T+A EE  ALK S   
Sbjct: 168 KIMRSLTPKFDYIVCSIEEAKNVAELRVDELQSSLLVHEQRLNRTTASEEQTALKASIVS 227

Query: 196 EASSSR-SRGQ-RRGRGHGRGGREKNGYVGKSADLVRDD 202
           E+SSSR  RG+ R GRG GRGGR   G+ G      RDD
Sbjct: 228 ESSSSRGGRGRGRGGRGRGRGGR---GHQGGGRSGHRDD 263

[Close]

BLAST of CmoCh01G008970 vs. TrEMBL
Match: M5WQS3_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppb020964mg PE=4 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 3.2e-31
Identity = 100/247 (40.49%), Postives = 137/247 (55.47%), Query Frame = 1


Query: 1   MIAERQVDNYVQPAISRLD----------------------------EPNEGEVLLVVQQ 60
           M +++  +NY QPAI R D                            EP  G VL  ++Q
Sbjct: 1   MASDKVTNNYAQPAIPRFDGHYDHWSMLMENFLRSKEYWTLVETGIVEPESGVVLTELKQ 60

Query: 61  QRLAASKLKDLKVKNYLFQSIDRTILETMLQKKTSKEIGDSMRRKYQVSTRVKHAQLQ-- 120
           ++L  SKLKDLKVKNYLFQ+ID +ILET+LQK TSK+I +SM++KYQ ST++K   +   
Sbjct: 61  KKLDESKLKDLKVKNYLFQAIDLSILETILQKDTSKKIWESMKKKYQSSTKMKRESVNDY 120

Query: 121 -AVRRDFENFQMQKGEMANDYI----------GKFNYIVCSIEEANNVEEMQIDELQSSL 180
            +      N     GEM  D             K +Y+VCSIEE+N+VE++ IDELQSSL
Sbjct: 121 FSKAMAIANKMSIHGEMMEDVTILEKVLRSMTTKVDYVVCSIEESNDVEQLSIDELQSSL 180

Query: 181 LVHEQKLNHTSAIEEIKALKISTPGEASSSRSRGQRRGRGHGRGGREKNGYVGKSADLVR 207
           LVHEQ +N ++ +E   ALK+ST  ++ ++R RG   G+G GRG     G   +      
Sbjct: 181 LVHEQTINWSTFVEH--ALKVSTNSDSPAARGRG-GHGQGRGRGSSHGRGRGSRDGKKSN 240

[Close]

BLAST of CmoCh01G008970 vs. TrEMBL
Match: A0A0B2QM95_GLYSO (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) OS=Glycine soja GN=glysoja_046955 PE=4 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 7.2e-31
Identity = 95/197 (48.22%), Postives = 123/197 (62.44%), Query Frame = 1


Query: 20  EPNEGEVLLVVQQQRLAASKLKDLKVKNYLFQSIDRTILETMLQKKTSKEIGDSMRRKYQ 79
           EP E +  L+ +Q      KLKDLKVKNYLFQ+IDR +LET+L+K T+K   DSM++K+Q
Sbjct: 48  EPTEAQCKLIEEQ------KLKDLKVKNYLFQAIDREVLETVLKKDTTKNKWDSMKQKFQ 107

Query: 80  VSTRVKHAQLQAVRRDFENFQMQKGEMANDYIGK-------------------------- 139
            STRVK AQLQA+R+DFE  QM++GE+ N Y  +                          
Sbjct: 108 GSTRVKRAQLQALRKDFEILQMKEGEIMNAYFSRNLTIANKMKAHGESMTETIITAKILR 167

Query: 140 -----FNYIVCSIEEANNVEEMQIDELQSSLLVHEQKLNHTSAIEEIKALKISTPGEASS 186
                F+Y+VCSIEE+NN++ M IDELQSSLLVHEQ++   S  +E + LKIS   E  +
Sbjct: 168 SMISKFDYVVCSIEESNNLDVMTIDELQSSLLVHEQRMR--SRGKEKQVLKIS--HEDKA 227

[Close]

BLAST of CmoCh01G008970 vs. TrEMBL
Match: A0A0B2QZ81_GLYSO (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) OS=Glycine soja GN=glysoja_042648 PE=4 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 1.0e-29
Identity = 92/202 (45.54%), Postives = 123/202 (60.89%), Query Frame = 1


Query: 23  EGEVLLVVQQQRLAASKLKDLKVKNYLFQSIDRTILETMLQKKTSKEIGDSMRRKYQVST 82
           EG     V+++ +   KLKDLK KNYLFQ++DR++LET+L K TSK I DS+++KYQ ++
Sbjct: 48  EGTPFTEVERKHIDDQKLKDLKAKNYLFQALDRSVLETILNKDTSKNIWDSLKQKYQGTS 107

Query: 83  RVKHAQLQAVRRDFENFQMQKGEMANDYIG------------------------------ 142
           RVK AQLQA+R++FE  +M++GE  NDY                                
Sbjct: 108 RVKRAQLQALRKEFEILRMKEGESVNDYFAWTLAIANKMKANGENKGDVAVVEKILRSMT 167

Query: 143 -KFNYIVCSIEEANNVEEMQIDELQSSLLVHEQKLNHTSAIEEIKALKIS-TPGEASSSR 187
            KF+Y+VCSIEE+ + + + IDELQSSLLVHE  L  TS +EE +AL+I+ T   A   R
Sbjct: 168 PKFDYVVCSIEESKDTDTLTIDELQSSLLVHE--LRMTSHVEEAQALQIAHTDQHAEQGR 227

[Close]

BLAST of CmoCh01G008970 vs. TrEMBL
Match: A0A0K9QD63_SPIOL (Uncharacterized protein (Fragment) OS=Spinacia oleracea GN=SOVF_198060 PE=4 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 1.0e-29
Identity = 90/193 (46.63%), Postives = 117/193 (60.62%), Query Frame = 1


Query: 31  QQQRLAASKLKDLKVKNYLFQSIDRTILETMLQKKTSKEIGDSMRRKYQVSTRVKHAQLQ 90
           Q++ +  +KLKDLKVKN+LFQSIDR ILET+L K TSK I +SMR+KYQ STRVK AQLQ
Sbjct: 34  QRKAVEEAKLKDLKVKNFLFQSIDREILETILDKSTSKAIWESMRKKYQGSTRVKRAQLQ 93

Query: 91  AVRRDFENFQMQKGEMANDYIG-------------------------------KFNYIVC 150
           A+RR+FE   M++GE  + ++G                               +FNY+VC
Sbjct: 94  ALRREFELLAMKEGEKVDVFLGRTLMVVNKMKVNGESMAESTVVSKILRSLTQRFNYVVC 153

Query: 151 SIEEANNVEEMQIDELQSSLLVHEQKLNHTSAIEEIKALKISTPGEASSSRSRGQ----R 189
           SIEE+N++  M IDEL  SLLVHEQ++N    ++E +AL++S     S  R RG     R
Sbjct: 154 SIEESNDLSTMSIDELHGSLLVHEQRMN--GHVQEEQALQVSQDERFSGGRGRGGRGAFR 213

[Close]

BLAST of CmoCh01G008970 vs. TAIR10
Match: AT1G48720.1 (AT1G48720.1 unknown protein)

HSP 1 Score: 53.1 bits (126), Expect = 2.9e-07
Identity = 23/45 (51.11%), Postives = 31/45 (68.89%), Query Frame = 1


Query: 208 MANMMGQMPLPRLTKTNYENWSIQMKALLDLQDAWEVVEDAFKEP 253
           MA+      +P LTK+NY+NWS++MKA+L   D WE+VE  F EP
Sbjct: 1   MASNNVPFQVPVLTKSNYDNWSLRMKAILGAHDVWEIVEKGFIEP 45

[Close]

BLAST of CmoCh01G008970 vs. NCBI nr
Match: gi|595794587|ref|XP_007200889.1| (hypothetical protein PRUPE_ppb015139mg, partial [Prunus persica])

HSP 1 Score: 171.8 bits (434), Expect = 1.6e-39
Identity = 111/219 (50.68%), Postives = 138/219 (63.01%), Query Frame = 1


Query: 16  SRLDEPNEGEVLLVVQQQRLAASKLKDLKVKNYLFQSIDRTILETMLQKKTSKEIGDSMR 75
           S +D P EG VL   QQ+R+A  KLKDL+VKNYLFQ++DR+ILET+L+K+TSK+I DS++
Sbjct: 48  SGIDAPAEGVVLTEQQQKRVAEQKLKDLRVKNYLFQALDRSILETILEKETSKQIWDSLK 107

Query: 76  RKYQVSTRVKHAQLQAVRRDFENFQMQKGEMANDYIG----------------------- 135
           +KY  S RVK A LQ + +DFE  QM+ GE   D+                         
Sbjct: 108 KKYAGSERVKRAVLQTLTKDFETLQMKSGESITDFFARTLGIASKMRSNGGTMEEVKVVE 167

Query: 136 --------KFNYIVCSIEEANNVEEMQIDELQSSLLVHEQKLNHTSAIEEIKALKISTPG 195
                   KF+YIVCSIEEA NV E+++DELQSSLLVHEQ+LN T+A EE  ALK S   
Sbjct: 168 KIMRSLTPKFDYIVCSIEEAKNVAELRVDELQSSLLVHEQRLNRTTASEEQTALKASIVS 227

Query: 196 EASSSR-SRGQ-RRGRGHGRGGREKNGYVGKSADLVRDD 202
           E+SSSR  RG+ R GRG GRGGR   G+ G      RDD
Sbjct: 228 ESSSSRGGRGRGRGGRGRGRGGR---GHQGGGRSGHRDD 263

[Close]

BLAST of CmoCh01G008970 vs. NCBI nr
Match: gi|1000938139|ref|XP_015583711.1| (PREDICTED: RNA-binding protein 26-like [Ricinus communis])

HSP 1 Score: 146.7 bits (369), Expect = 5.5e-32
Identity = 92/199 (46.23%), Postives = 123/199 (61.81%), Query Frame = 1


Query: 17  RLDEPNEGEVLLVVQQQRLAASKLKDLKVKNYLFQSIDRTILETMLQKKTSKEIGDSMRR 76
           R+    EG  L  VQ++ +   KLKDLK KNYLFQ++DR++LET+L K+TSK I DSMR+
Sbjct: 5   RIPAVAEGGALTEVQKKNIEEQKLKDLKAKNYLFQALDRSVLETILNKETSKSIWDSMRQ 64

Query: 77  KYQVSTRVKHAQLQAVRRDFENFQMQKGEMANDYIG---------KFN------------ 136
           K+Q +TRVK + LQA+R++FE  +M++GE  +DY           K N            
Sbjct: 65  KHQGATRVKQSHLQALRKEFEVLEMKEGESVSDYFARTLTIVNKMKKNGESKGDGEVVAK 124

Query: 137 ----------YIVCSIEEANNVEEMQIDELQSSLLVHEQKLNHTSAIEEIKALKISTPGE 184
                     Y+VC+IEEA +   M IDELQSSLLVHEQ++   S++EEI+ALKIS+  +
Sbjct: 125 ILRSMTPDFNYVVCAIEEAKDTSLMSIDELQSSLLVHEQRMKKKSSLEEIQALKISSGEQ 184

[Close]

BLAST of CmoCh01G008970 vs. NCBI nr
Match: gi|595911705|ref|XP_007214367.1| (hypothetical protein PRUPE_ppb020964mg [Prunus persica])

HSP 1 Score: 143.7 bits (361), Expect = 4.6e-31
Identity = 100/247 (40.49%), Postives = 137/247 (55.47%), Query Frame = 1


Query: 1   MIAERQVDNYVQPAISRLD----------------------------EPNEGEVLLVVQQ 60
           M +++  +NY QPAI R D                            EP  G VL  ++Q
Sbjct: 1   MASDKVTNNYAQPAIPRFDGHYDHWSMLMENFLRSKEYWTLVETGIVEPESGVVLTELKQ 60

Query: 61  QRLAASKLKDLKVKNYLFQSIDRTILETMLQKKTSKEIGDSMRRKYQVSTRVKHAQLQ-- 120
           ++L  SKLKDLKVKNYLFQ+ID +ILET+LQK TSK+I +SM++KYQ ST++K   +   
Sbjct: 61  KKLDESKLKDLKVKNYLFQAIDLSILETILQKDTSKKIWESMKKKYQSSTKMKRESVNDY 120

Query: 121 -AVRRDFENFQMQKGEMANDYI----------GKFNYIVCSIEEANNVEEMQIDELQSSL 180
            +      N     GEM  D             K +Y+VCSIEE+N+VE++ IDELQSSL
Sbjct: 121 FSKAMAIANKMSIHGEMMEDVTILEKVLRSMTTKVDYVVCSIEESNDVEQLSIDELQSSL 180

Query: 181 LVHEQKLNHTSAIEEIKALKISTPGEASSSRSRGQRRGRGHGRGGREKNGYVGKSADLVR 207
           LVHEQ +N ++ +E   ALK+ST  ++ ++R RG   G+G GRG     G   +      
Sbjct: 181 LVHEQTINWSTFVEH--ALKVSTNSDSPAARGRG-GHGQGRGRGSSHGRGRGSRDGKKSN 240

[Close]

BLAST of CmoCh01G008970 vs. NCBI nr
Match: gi|734379763|gb|KHN22605.1| (Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial [Glycine soja])

HSP 1 Score: 142.5 bits (358), Expect = 1.0e-30
Identity = 95/197 (48.22%), Postives = 123/197 (62.44%), Query Frame = 1


Query: 20  EPNEGEVLLVVQQQRLAASKLKDLKVKNYLFQSIDRTILETMLQKKTSKEIGDSMRRKYQ 79
           EP E +  L+ +Q      KLKDLKVKNYLFQ+IDR +LET+L+K T+K   DSM++K+Q
Sbjct: 48  EPTEAQCKLIEEQ------KLKDLKVKNYLFQAIDREVLETVLKKDTTKNKWDSMKQKFQ 107

Query: 80  VSTRVKHAQLQAVRRDFENFQMQKGEMANDYIGK-------------------------- 139
            STRVK AQLQA+R+DFE  QM++GE+ N Y  +                          
Sbjct: 108 GSTRVKRAQLQALRKDFEILQMKEGEIMNAYFSRNLTIANKMKAHGESMTETIITAKILR 167

Query: 140 -----FNYIVCSIEEANNVEEMQIDELQSSLLVHEQKLNHTSAIEEIKALKISTPGEASS 186
                F+Y+VCSIEE+NN++ M IDELQSSLLVHEQ++   S  +E + LKIS   E  +
Sbjct: 168 SMISKFDYVVCSIEESNNLDVMTIDELQSSLLVHEQRMR--SRGKEKQVLKIS--HEDKA 227

[Close]

BLAST of CmoCh01G008970 vs. NCBI nr
Match: gi|147859212|emb|CAN81839.1| (hypothetical protein VITISV_033739 [Vitis vinifera])

HSP 1 Score: 138.7 bits (348), Expect = 1.5e-29
Identity = 89/200 (44.50%), Postives = 124/200 (62.00%), Query Frame = 1


Query: 23  EGEVLLVVQQQRLAASKLKDLKVKNYLFQSIDRTILETMLQKKTSKEIGDSMRRKYQVST 82
           EG  L   Q++ L   KLKDLK KNYLFQ+IDR+ILET+L+K T+K+I DS+++KYQ + 
Sbjct: 48  EGIDLSDAQKKALEDQKLKDLKAKNYLFQAIDRSILETILKKDTAKDIWDSLKQKYQGTA 107

Query: 83  RVKHAQLQAVRRDFENFQMQKGEMANDYIG------------------------------ 142
           RVKHAQLQA+R++FE   M+ GE  NDY G                              
Sbjct: 108 RVKHAQLQALRKEFEVLHMKTGESVNDYFGRTLIIANKMRTHGERMVDVVIIEKILRSMT 167

Query: 143 -KFNYIVCSIEEANNVEEMQIDELQSSLLVHEQKLNHTSAIEEIKALKIST---PGEASS 189
            K++Y+VCSIEE+N+++ + IDELQSSLLVHEQ+++     E+  AL+++T    G    
Sbjct: 168 SKYDYVVCSIEESNDLDTLSIDELQSSLLVHEQRISRHVVDEQ--ALQVTTGAQQGGRHG 227

The following BLAST results are available for this feature:

BLAST of CmoCh01G008970 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh01G008970 vs. TrEMBL


Match Name	E-value	Identity	Description
M5VYN8_PRUPE	1.1e-39	50.68	Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppb015139mg PE=4 S...	[more]
M5WQS3_PRUPE	3.2e-31	40.49	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppb020964mg PE=4 SV=1	[more]
A0A0B2QM95_GLYSO	7.2e-31	48.22	Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) OS=Glycin...	[more]
A0A0B2QZ81_GLYSO	1.0e-29	45.54	Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) OS=Glycin...	[more]
A0A0K9QD63_SPIOL	1.0e-29	46.63	Uncharacterized protein (Fragment) OS=Spinacia oleracea GN=SOVF_198060 PE=4 SV=1	[more]

BLAST of CmoCh01G008970 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G48720.1	2.9e-07	51.11	unknown protein	[more]

BLAST of CmoCh01G008970 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|595794587\|ref\|XP_007200889.1\|	1.6e-39	50.68	hypothetical protein PRUPE_ppb015139mg, partial [Prunus persica]	[more]
gi\|1000938139\|ref\|XP_015583711.1\|	5.5e-32	46.23	PREDICTED: RNA-binding protein 26-like [Ricinus communis]	[more]
gi\|595911705\|ref\|XP_007214367.1\|	4.6e-31	40.49	hypothetical protein PRUPE_ppb020964mg [Prunus persica]	[more]
gi\|734379763\|gb\|KHN22605.1\|	1.0e-30	48.22	Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial [Glycine so...	[more]
gi\|147859212\|emb\|CAN81839.1\|	1.5e-29	44.50	hypothetical protein VITISV_033739 [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR025314	DUF4219

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh01G008970.1	CmoCh01G008970.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025314	Domain of unknown function DUF4219	PFAM	PF13961	DUF4219	coord: 220..246 score: 1.
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 41..189 score: 1.0
None	No IPR available	PANTHER	PTHR11439:SF185	SUBFAMILY NOT NAMED	coord: 41..189 score: 1.0
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 41..118 score: 1.

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh01G008970	Cucumber (Gy14) v1	cgycmoB0661
CmoCh01G008970	Cucurbita maxima (Rimu)	cmacmoB056
CmoCh01G008970	Cucurbita maxima (Rimu)	cmacmoB468
CmoCh01G008970	Wild cucumber (PI 183967)	cmocpiB476
CmoCh01G008970	Cucumber (Chinese Long) v2	cmocuB472
CmoCh01G008970	Melon (DHL92) v3.5.1	cmomeB375
CmoCh01G008970	Watermelon (Charleston Gray)	cmowcgB429
CmoCh01G008970	Watermelon (Charleston Gray)	cmowcgB430
CmoCh01G008970	Watermelon (97103) v1	cmowmB411
CmoCh01G008970	Watermelon (97103) v1	cmowmB412
CmoCh01G008970	Cucurbita pepo (Zucchini)	cmocpeB448
CmoCh01G008970	Cucurbita pepo (Zucchini)	cmocpeB468
CmoCh01G008970	Bottle gourd (USVL1VR-Ls)	cmolsiB440
CmoCh01G008970	Cucumber (Gy14) v2	cgybcmoB611
CmoCh01G008970	Melon (DHL92) v3.6.1	cmomedB431
CmoCh01G008970	Silver-seed gourd	carcmoB0230
CmoCh01G008970	Cucumber (Chinese Long) v3	cmocucB0565
CmoCh01G008970	Watermelon (97103) v2	cmowmbB481
CmoCh01G008970	Watermelon (97103) v2	cmowmbB482
CmoCh01G008970	Wax gourd	cmowgoB0553
CmoCh01G008970	Cucurbita moschata (Rifu)	cmocmoB021