CmoCh01G008840 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh01G008840
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Zinc finger and BTB domain-containing protein 11 isoform 1
Location	Cmo_Chr01 : 4829353 .. 4835217 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGAAGAAGAAGCAGTTGGCATCTTCAGCTCCATGGCGGGGGGAGGAGGAAGTGGATGAGTTCGCCGATGCAAAGCTCAAAGTGACTGAGAATCCCGGCGAGACTCCGGTCATGCACGTTCTTTGTCAAGAGTTGTAGCAAATTGGATGCAGAATGCATAAATTTTGTCCAATTTAAAGTTTAATTACATTACTGGGTTGAAATTTTTACTCCACTACAATACAACACCAGAAAAATGGTTGCTACAAAGAACTCCCTAGCCTAGCCCCTTTTGGATGGCAAGGGAGCACAGAAAAGTGCTGCAAAGATTGCCTATTCCTGTCCAGGTCTCTGCGCACCTCCTCGCCAATAGCCCGATTTACTCAGTCCACATTCTGATAGAAATTTGTCGTAATCCTGATCCAGTTTTTTGTAAGCATGTGACAAATCTTCAACTGAGATCTGTTGTTCTTCTGAAGGGCTCTGCAAAAGAACTACAATGAGTATAGAATGATTTTTAAGGGTATTGTTTAGAAATCAAGCATATTTTCTATAATGATTTCGACATATGATGTATTTTTATAAGTTATGAAGTTCATTTAAACACTCTTAGTTAGTAACATATTTCTGCATTGTTCCTTTTCTTGTTCACCCCACCCATGTGCAGATCCAGTGTTGTTATCTGAAGATAGTTTGCCATTTTGGCAGCATTATAACACTGATTGGAACAAAAAGATGGGCAAACAAGAAGAAAGCGAAGTGGATGGCCAGAGAACTCCATTAGGAATGGACAAAAATGAATGATCAGCTGGAAAAGCCTTGGGGAGTTGGGTACTCAAAGAAATGAAAGCAACAATTCAACAACTCTATCAGTTCTCAATTCTCCTCCCGTTTCACATTGCAAGTAAAACCATTCCTTACAGTAAGAGTAGGACCAAAAAGTTACATTACTTACAGTAGAATATATGGAGGACTCAGAATCCAAACCATTCAATTCCCTTATCTCTCGAAGAGCAGACCTCCAATGGCCGCTTCTGAAGTTGTGACATTCTCCCTCTGGTTCCTTAACGGGTTTAAGCCTCGACGTTCCGAAAACTCTAGCATAAGAGGCACCAATTATGCATTTGGCACAAAATACTATGAGGGGAACCAAAACTACCAAACTAGTGGTTCTAGCCTGACAAAGAAAAAAGAAGAGAACAGATAAGTTTGTATAAATATGTGTAGATTAGATATAGCTCTGCATCTGGTGAGAAAAAGAAACTTACAGGAGGTAGTCGGGGGCAGGCAAGCGTGAAATGCATTTGATATTTACAAAGTCCATTCAAAGAACTCTGAAGCTTTTCTTGCAATTGATATCTATCTCTAAACTGCAGTGATTATGTAAGACATAAGAAAGAAGCCAAGAACAGGCATAGATTATATGGTAATTCATTCTGGAACTGATAAAACTGTCACTAAGCTAATCAGGATAAACACGATTAATTACTCAATACTTCATTGATGTGATATCTTCTTCTAAACTAAATGGAAATTAGAACTCGACCCTTGTGGCCATATATACAAAAATTCCTCATACATGTAGTTCACGAACGCAATGAATCAACAAAAAGTTAAGTGAGTTTGTCAATTCTACAAGTAATACCAATACTTTCATAACCGAATTTAGAAATTATGAACCCAACTCATGGAAAGTGAGTTGAAATTCATATGGGGTTTGAAATTTTTGAGGATCTGAACATTCAGTAACTAGTTTGCAGTACAATTTAGCCTATAGCAACCAGTGTTAGAGTTAAGGTTGGAAAAGGCATTCAATTCCAGAAGTAATAGAATCAATTCAAACATGGGGCTGGAGTAATTAGAAGCAAAAGCACTTGAATGGAGAGAAACATACCAGCGCAATGGCTCTGAATTGATTCTTCAAGGATGCTTTGGCGTTGGCCCAATTTCTATTGGAGGGAAAAGGAGAAAAGCGAAGCAAGTTGTGTAAGATTTCTCAGAAAAAGAAAGAAAAGGGTGTCGGTGATGGGTTGTGAGATAAGGGAATGGCGAAATACCTGTGAGGAGTTAGAAGAGAAGGGAGAATTGGTTGTGGGAGAAGAGGAGAACGGTCTACTCCATTTCTCTGCCCAACCTTCACTTCCATCGCACAAACCCTTCAAATTTCGCCATGCCTATTGCCTATTTTTGTTTTCTTTTTCCCTTTTAGTGTAATTACATAAACAGGAGAAAATTGAAACCAATATTTAATACAAATGAATGTGCTTAAGGATCGTGACATACTTGCTCTTAATTCGTTCCCCTCGGATAAGAATCCAACTCTACGCTAAGAGCAAGTGTTGTTCAAACTTGGATTATCGATAGGGTTTCAACCTTTTTCTTTCTCTTAATCACATAGTTATAGTCTCTAATCCTCCTCCCAATCTCAACATGTGTTTCGACCTAGAACTTGTGACCCATTTGAGAACACACCTAAACGGAATAAAAGTTCTCTGTTTATAATAAAATAAATTACAAGAATATGAAAAGAAAAGAGAGAGCAATTACAAGGATATAGAAAAACTAATAAATGAAAAGATACATATGGTAAGTCGCAACGGAAGACAAGTATAGAAATACTAATAAATGAAAATATACATATGGTAAGTCGCAATGGAAGACAAGTATAGAAATTTGTCTATAATAAAAGATCAAATATGATATATGGTAAACTATAATACAATACTAAATATCTTTAACACTTCAACCCAATAAGGTCTCATGGTTCATTGACGACCCTCGGTGGCCTAGGCCCATGGAAACAAGGTCCACCCCATGCACCAAATGAGATGTTTAGTTGATCACGTGACCCACAAAGCAATAGGCCCAAGCTACCCTTTAGACCCTCGTCAAGCGAGCGGTTAGCTTATCTGAGTCGACATCTCAATTGGGGTTCAAATATGACTCGAATGCATAATCAGCTTCCAGTTGATTCACCGTAGCCATGTAGCTCATGATTTGATTCGATAACTTAATTCAACTCGATTTGGTGATATTAGCTTCATTATGAATTGCTTTTTAAGTATTCAAGCCAAATGATGTCAATATGGATGATTTTATTTTTTGGGCAATTAATTATATTTATGTAATAATTTAAAATTAGAAAGAAAAAATAAAATAAAAGATCAGTTGAGAAGGTGGGGAATTGGACTTCAATGCAGGGAGGTCCATTGGTTTATTAGGTTACAACACTTGCTTCCTTTCATCCTATTTGGGCGGTTCAGAGTCAGTGGAGAATACATTTCCTCATGGTTCTAGGTCAACTATGATCCCACTTGGGTTTGATCCTCATGATTCTAAGTCAACTATGATCCCACTTGGGTTTGATAAGCTCGGTCTTATTTACTAGTTTCAACTCCTCGAACATGTTTAAGGTTAGTATGACTACATTTTAGCTACTTTAAATTATTTAAAGTTAAGTTTAAATTATTTTGTGCAAAATTAGATGAACCAACTTTCGTAGTATAATTCTAAGTTATGATTGTGAGATTTCTCAGATAGAATTAAATTTGAAGAAGTAGCGCTAAGTTAACGTCGAGGGAGCACAGTGACTTCAGCCTAGATCAACCATGTAAGTAGCTCTACTATTGGCTTGATTTAATGAATTGTATTATGTATGATGATGCATGCCCTGTGGCCCATCCATGTGTCATATATATAAATGATATGTTAAGCTATGCTATGTTGCTTGATGCTATATTATAATATGCTATGTTATGTCATGTCATGCTATGTTATGCCATGTTATGATATGTTATACTATGATAAGTTATGTCATGTATAAAAGTCATGTTATATTGTGATCATGCCGTATTGTATAAAGTTGTTATGAAATCGATAATCATAAACCTCTGTAGACCATGCCATGAAAGTTATGCTATTTATCACATAATGTACCAGAATTATGTAACCATAATTCATAGGCTTATTATATTATAGATAAATGGAGGTTTGTCTTGCATTACACATTATGTTATGATTATAAGATATGGGGATCTTATATATATTTGTATCTTATGTGCATCAAGATACTTCCCTAATATGATGAGTACGAACGCATACCATATGACTTATGATTATGACATTTATGTTTGCCATGATGTTTGCAGGTCCTTCTCCTCCGTGGTGTGCGACAATAACCCGTTAGCAAGTGCTAGCCCGACGAGCCGACCCAAGGGGTGTGCAAGCCCGCCTAGTGGGCCCATGCTCGCATGCCTAAGCCATGTGTAAAGAAGTACTACACATCCAACCTTGCTTGAACTAGAAAGTTGCAGGCCATGCTCTGATGTTTTATAAGGATAGGTCTCACCATGCTGCACGTGTTTGCATTTTCAAACTCCAATAGTGGAGTTCTTGAGTATTTCTTAAAATACAAAATTCATGTACTACTCTTACATTTCGAGTAAAAATATCGTAGTCATGAGAAAGACCATGGAACTAGGTTAGGTTAGTTGCATTTTGTCTACTTTGTAGCCCTCATGTTACATTAATGCATTGTTTGATTTTTTTTTCTTTATTTTATTTATATTTCAAGTTATTTATTTTCTACTATTTTGTTTTAAAACTTTTATTAAGAACATTTAAGTCGAGATATCATTTTTGAATATTTTAAATGAACTATATGGATGACGGCCTCGTAGTGAAGGCCATTGATTGAAAGTAGGAGAGTTGCATTTATGTTTAAATTTTATCTTTTAAGTTTGATTAGGGCGTTTTCGTTACTTCGAGTTTTTTATTTTTTTTTATTTTGTTTGCTCTATTTCTTGAGGTTTACCTTTATTAAATGAAGCTTACAATTATTTAAGTCAGGACATTGTTTCAAATGAATTTATTGACACATAATAGTCATCCGATAGATGTCTCTGTTCCATTAAAAAAAATAAGGTTGTTACACTAAAAAAAAAAAAAAAAGGAAAAACGAAGGAAAAAAAAAGACAAAAAAAAAAGTTTGAAAATTATATCTTTTTTTTTTTGGTAATTTGACTTTAACTTTAACCTTTTTTCTTTTTTTTTTTTGGGTTGTTGCACCTCCAATCAACAATATCTTTTCATATTCCATGGCTTACACCAACAAGTTAATACACATTTTTGAACCACACATGTCACAAAACTAGAGTAAGCACCAAATTTGATTTTAATACTCTAATACTTGGTCTTATCACATACACGTTCAAATTAGGAATTTGAATTTCATATCGATACATGTTCAACATTCACCCTTTTTCTCTCCGTATGTCGGTTGATATTTCTTGAATAAAAACGTTGAGAAAAAATGAGTTGTCATTTCCAAATTATTACATACTAAGGATTGCATCAAAATTAAGGCTCAATTTGCATCCTTGGTCGGTGACCAAAAGCCGAAAGGAAACAAAAGACCATACACTCTAGCACGTCTCCTTTCCTTTTGAGAAAAAAAATTTGTTTTTTTAGCCTTTTTCAGCCGTTTTATTGATGCTAAACTTCAATTACTCCACTAAGTTTAATTAACCAAATGTTGGCGAAGTATGTATAAATAGGAACATGAATGTGATAATTTGAACAACAAACAAAAGAACAGAGAAAGGTGTGTGATTATGGGGAAGAGGTTGATGTGTTTCGGTCTTGTTCTCATCTGCCTTGTATCCATTTCTGAGTCAGCTGGTAAGCCGTTTGATTGAAAATATGTTGTTTTAATGTGATGGTTGAAGGTTTTGTTAATTTGTGCAGTTCCATCAAAGACTTGCCGAGATAGTTTTCATTCATCGGGAGTATGTATGGGATGGATTGGACTGTCAGAATGCTACAGTGAATCAATGGCAAGGCATGGGGATATCCCACCCAGGAGTTGCGAATGCATTCCAACGG

mRNA sequence

ATGGCGAAGAAGAAGCAGTTGGCATCTTCAGCTCCATGGCGGGGGGAGGAGGAAGTGGATGAGTTCGCCGATGCAAAGCTCAAAGTGACTGAGAATCCCGGCGAGACTCCGGTCATGCACGTCTCTGCGCACCTCCTCGCCAATAGCCCGATTTACTCAGTCCACATTCTGATAGAAATTTGTCGTAATCCTGATCCAATTAGATATAGCTCTGCATCTGGTGAGAAAAAGAAACTTACAGGAGGTAGTCGGGGGCAGGCAAGCTTCCATCAAAGACTTGCCGAGATAGTTTTCATTCATCGGGAGTATGTATGGGATGGATTGGACTGTCAGAATGCTACAGTGAATCAATGGCAAGGCATGGGGATATCCCACCCAGGAGTTGCGAATGCATTCCAACGG

Coding sequence (CDS)

ATGGCGAAGAAGAAGCAGTTGGCATCTTCAGCTCCATGGCGGGGGGAGGAGGAAGTGGATGAGTTCGCCGATGCAAAGCTCAAAGTGACTGAGAATCCCGGCGAGACTCCGGTCATGCACGTCTCTGCGCACCTCCTCGCCAATAGCCCGATTTACTCAGTCCACATTCTGATAGAAATTTGTCGTAATCCTGATCCAATTAGATATAGCTCTGCATCTGGTGAGAAAAAGAAACTTACAGGAGGTAGTCGGGGGCAGGCAAGCTTCCATCAAAGACTTGCCGAGATAGTTTTCATTCATCGGGAGTATGTATGGGATGGATTGGACTGTCAGAATGCTACAGTGAATCAATGGCAAGGCATGGGGATATCCCACCCAGGAGTTGCGAATGCATTCCAACGG

Homology

[Close]

BLAST of CmoCh01G008840 vs. TrEMBL
Match: A0A0A0KW70_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G650520 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 2.5e-11
Identity = 37/41 (90.24%), Postives = 39/41 (95.12%), Query Frame = 1


Query: 1  MAKKKQLASSAPWRGEEEVDEFADAKLKVTENPGETPVMHV 42
          MAKKKQLASSAPWRGEEEVDEFA AK+KVT+NPGET VMHV
Sbjct: 1  MAKKKQLASSAPWRGEEEVDEFAGAKVKVTKNPGETSVMHV 41

[Close]

BLAST of CmoCh01G008840 vs. TrEMBL
Match: M5XP04_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013136mg PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 7.0e-06
Identity = 30/39 (76.92%), Postives = 30/39 (76.92%), Query Frame = 1


Query: 4  KKQLASSAPWRGEEEV-DEFADAKLKVTENPGETPVMHV 42
          KKQL SSAPWR EEE  DEF DAKLKVT  PG TP MHV
Sbjct: 5  KKQLMSSAPWRVEEEAEDEFQDAKLKVTSQPGSTPTMHV 43

[Close]

BLAST of CmoCh01G008840 vs. NCBI nr
Match: gi|659119400|ref|XP_008459636.1| (PREDICTED: uncharacterized protein LOC103498699 [Cucumis melo])

HSP 1 Score: 79.0 bits (193), Expect = 7.2e-12
Identity = 38/41 (92.68%), Postives = 40/41 (97.56%), Query Frame = 1


Query: 1  MAKKKQLASSAPWRGEEEVDEFADAKLKVTENPGETPVMHV 42
          MAKKKQLASSAPWRGEEEVDEFA+AKLKVT+NPGET VMHV
Sbjct: 1  MAKKKQLASSAPWRGEEEVDEFAEAKLKVTKNPGETSVMHV 41

[Close]

BLAST of CmoCh01G008840 vs. NCBI nr
Match: gi|449447599|ref|XP_004141555.1| (PREDICTED: uncharacterized protein LOC101206859 [Cucumis sativus])

HSP 1 Score: 76.6 bits (187), Expect = 3.6e-11
Identity = 37/41 (90.24%), Postives = 39/41 (95.12%), Query Frame = 1


Query: 1  MAKKKQLASSAPWRGEEEVDEFADAKLKVTENPGETPVMHV 42
          MAKKKQLASSAPWRGEEEVDEFA AK+KVT+NPGET VMHV
Sbjct: 1  MAKKKQLASSAPWRGEEEVDEFAGAKVKVTKNPGETSVMHV 41

The following BLAST results are available for this feature:

BLAST of CmoCh01G008840 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh01G008840 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KW70_CUCSA	2.5e-11	90.24	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G650520 PE=4 SV=1	[more]
M5XP04_PRUPE	7.0e-06	76.92	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013136mg PE=4 SV=1	[more]

BLAST of CmoCh01G008840 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmoCh01G008840 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659119400\|ref\|XP_008459636.1\|	7.2e-12	92.68	PREDICTED: uncharacterized protein LOC103498699 [Cucumis melo]	[more]
gi\|449447599\|ref\|XP_004141555.1\|	3.6e-11	90.24	PREDICTED: uncharacterized protein LOC101206859 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0045036	protein targeting to chloroplast
cellular_component	GO:0044434	chloroplast part
cellular_component	GO:0009941	chloroplast envelope
cellular_component	GO:0009535	chloroplast thylakoid membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh01G008840.1	CmoCh01G008840.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR37191	FAMILY NOT NAMED	coord: 1..41 score: 1.6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh01G008840	Cucsa.236930	Cucumber (Gy14) v1	cgycmoB0661
CmoCh01G008840	CmaCh09G012450	Cucurbita maxima (Rimu)	cmacmoB043
CmoCh01G008840	Cla012496	Watermelon (97103) v1	cmowmB411
CmoCh01G008840	Csa5G650520	Cucumber (Chinese Long) v2	cmocuB472
CmoCh01G008840	MELO3C022198	Melon (DHL92) v3.5.1	cmomeB375
CmoCh01G008840	ClCG08G000640	Watermelon (Charleston Gray)	cmowcgB430
CmoCh01G008840	CSPI05G31160	Wild cucumber (PI 183967)	cmocpiB476
CmoCh01G008840	Lsi08G000510	Bottle gourd (USVL1VR-Ls)	cmolsiB440
CmoCh01G008840	Cp4.1LG06g10030	Cucurbita pepo (Zucchini)	cmocpeB468
CmoCh01G008840	MELO3C022198.2	Melon (DHL92) v3.6.1	cmomedB431
CmoCh01G008840	CsaV3_5G040220	Cucumber (Chinese Long) v3	cmocucB0565
CmoCh01G008840	CsGy5G030490	Cucumber (Gy14) v2	cgybcmoB611

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh01G008840	CmoCh09G012990	Cucurbita moschata (Rifu)	cmocmoB021

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh01G008840	Watermelon (97103) v2	cmowmbB482
CmoCh01G008840	Wax gourd	cmowgoB0553
CmoCh01G008840	Cucurbita maxima (Rimu)	cmacmoB468
CmoCh01G008840	Watermelon (Charleston Gray)	cmowcgB429
CmoCh01G008840	Watermelon (97103) v1	cmowmB412
CmoCh01G008840	Cucurbita pepo (Zucchini)	cmocpeB448