CmoCh01G007530 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh01G007530
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Structure-specific endonuclease subunit SLX1 homolog (3.1.-.-)
Location	Cmo_Chr01 : 3886714 .. 3887615 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TGAATCGGGAATCGGGATGTGTTTTCGTCGGCCGGCGATAACCAGATCGGAACCCTAAGAGAGATTCGTTTCAGATTTTTAAAACTAAATTTAGGGCAACGCAAAGTTGACTAAAGCCTTCCGGTAAGATCGAGACGGCGAATTTCGATGCGAGACTGACAATGGGATTAAATCAATTAGGGCTAAACGACGAATTCATTTATATAAGCTAATAAATTCCCTTTGAAGTTGTACGCCAACGGTCTAATTGTATTATTGAGCAGATTTTCTTCTTCCAGAGAGACAGAGAGATGAGGAAGAGGAAAGAGAAATCGGAGATCTCTGAAGCTACGGCGGTTGCAGAGGAGGAGGAGAAGGAAGACGATGAAGATGAAGGAAGCGGCAACGAATCGAACGGCTTCTTTTCATGCTATCTCTTGGCCTCTGTCTGCCCTTGTTTCAAAGGCCATACCTATATCGGGTTCGAATCCTTTCCTTCTTCTCGAACAAATTTTCTGCTTCTCTATGAAATAATGGCTTGAAATCCTCCATTTTCACGATTTCTTGATGCTCGAATCTGTTCCGATACTCCGATACTGGAAATTGTTTTACGATCTTTGAATCTGCAAATCTCTCGCTCTCTGCATAAATTGATCTCTGGATGCTCGAATCTGTTCCTCTACTCCCCGATACTGAAAATCGTTTTACGATCTTTGAATCTGTTCCTCTCTCGCTTTCTGCATAAATTGATTGAGGGAAAACATCAAGAAATATAGGAAATGTGTAAATCAATCTGCAGTGAACTGATTGGATTACTGTTTATATTGAATTTCAGATTCACAGTGAACCCTAAACGCAGAATCAGGCAGCACAATGGTGAAATTAGATGCGGTGCGTGGCGTACTAAGAGGAAGAGACCATGA

mRNA sequence

TGAATCGGGAATCGGGATGTGTTTTCGTCGGCCGGCGATAACCAGATCGGAACCCTAAGAGAGATTCGTTTCAGATTTTTAAAACTAAATTTAGGGCAACGCAAAGTTGACTAAAGCCTTCCGGTAAGATCGAGACGGCGAATTTCGATGCGAGACTGACAATGGGATTAAATCAATTAGGGCTAAACGACGAATTCATTTATATAAGCTAATAAATTCCCTTTGAAGTTGTACGCCAACGGTCTAATTGTATTATTGAGCAGATTTTCTTCTTCCAGAGAGACAGAGAGATGAGGAAGAGGAAAGAGAAATCGGAGATCTCTGAAGCTACGGCGGTTGCAGAGGAGGAGGAGAAGGAAGACGATGAAGATGAAGGAAGCGGCAACGAATCGAACGGCTTCTTTTCATGCTATCTCTTGGCCTCTGTCTGCCCTTGTTTCAAAGGCCATACCTATATCGGATTCACAGTGAACCCTAAACGCAGAATCAGGCAGCACAATGGTGAAATTAGATGCGGTGCGTGGCGTACTAAGAGGAAGAGACCATGA

Coding sequence (CDS)

ATGAGGAAGAGGAAAGAGAAATCGGAGATCTCTGAAGCTACGGCGGTTGCAGAGGAGGAGGAGAAGGAAGACGATGAAGATGAAGGAAGCGGCAACGAATCGAACGGCTTCTTTTCATGCTATCTCTTGGCCTCTGTCTGCCCTTGTTTCAAAGGCCATACCTATATCGGATTCACAGTGAACCCTAAACGCAGAATCAGGCAGCACAATGGTGAAATTAGATGCGGTGCGTGGCGTACTAAGAGGAAGAGACCATGA

Homology

[Close]

BLAST of CmoCh01G007530 vs. Swiss-Prot
Match: SLX1_NEMVE (Structure-specific endonuclease subunit SLX1 homolog OS=Nematostella vectensis GN=v1g174298 PE=3 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 1.1e-10
Identity = 36/63 (57.14%), Postives = 43/63 (68.25%), Query Frame = 1


Query: 24 DDEDEGSGNESNGFFSCYLLASVCPCFKGHTYIGFTVNPKRRIRQHNGEI-RCGAWRTKR 83
          DD   GSG     F   YLL  V P FKGHTYIG+TVNP RRI+QHNG + + GA++T R
Sbjct: 2  DDNIAGSG-----FHGVYLLYCVNPKFKGHTYIGYTVNPNRRIKQHNGGVDKGGAYKTSR 59

Query: 84 KRP 86
          K+P
Sbjct: 62 KKP 59

[Close]

BLAST of CmoCh01G007530 vs. Swiss-Prot
Match: SLX1_CRYNB (Structure-specific endonuclease subunit SLX1 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=SLX1 PE=3 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 2.1e-09
Identity = 27/49 (55.10%), Postives = 33/49 (67.35%), Query Frame = 1


Query: 37 FFSCYLLASVCPCFKGHTYIGFTVNPKRRIRQHNGEIRCGAWRTKRKRP 86
          F++CYLL S        TY+G T +P RRIRQHNGE++ GAW T R RP
Sbjct: 28 FYACYLLRSKATANSNRTYVGSTPDPPRRIRQHNGELKQGAWSTSRHRP 76

[Close]

BLAST of CmoCh01G007530 vs. Swiss-Prot
Match: SLX1_CRYNJ (Structure-specific endonuclease subunit SLX1 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=SLX1 PE=3 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 2.1e-09
Identity = 27/49 (55.10%), Postives = 33/49 (67.35%), Query Frame = 1


Query: 37 FFSCYLLASVCPCFKGHTYIGFTVNPKRRIRQHNGEIRCGAWRTKRKRP 86
          F++CYLL S        TY+G T +P RRIRQHNGE++ GAW T R RP
Sbjct: 28 FYACYLLRSKATANSNRTYVGSTPDPPRRIRQHNGELKQGAWSTSRHRP 76

[Close]

BLAST of CmoCh01G007530 vs. Swiss-Prot
Match: SLX12_TRYCC (Structure-specific endonuclease subunit SLX1 homolog 2 OS=Trypanosoma cruzi (strain CL Brener) GN=Tc00.1047053511881.30 PE=3 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 3.6e-09
Identity = 29/47 (61.70%), Postives = 34/47 (72.34%), Query Frame = 1


Query: 37 FFSCYLLASVCPCFKGHTYIGFTVNPKRRIRQHNGEIRCGAWRTKRK 84
          F   YLL S+ P   G  YIG+TV+P RR+RQHNGEI  GAWRTKR+
Sbjct: 5  FHCVYLLTSLDPQCAGEYYIGYTVDPIRRLRQHNGEIVSGAWRTKRR 51

[Close]

BLAST of CmoCh01G007530 vs. Swiss-Prot
Match: SLX11_TRYCC (Structure-specific endonuclease subunit SLX1 homolog 1 OS=Trypanosoma cruzi (strain CL Brener) GN=Tc00.1047053509453.60 PE=3 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 3.6e-09
Identity = 29/47 (61.70%), Postives = 34/47 (72.34%), Query Frame = 1


Query: 37 FFSCYLLASVCPCFKGHTYIGFTVNPKRRIRQHNGEIRCGAWRTKRK 84
          F   YLL S+ P   G  YIG+TV+P RR+RQHNGEI  GAWRTKR+
Sbjct: 5  FHCVYLLTSLDPQCAGEYYIGYTVDPIRRLRQHNGEIVSGAWRTKRR 51

[Close]

BLAST of CmoCh01G007530 vs. TrEMBL
Match: A0A0A0M0Y6_CUCSA (Structure-specific endonuclease subunit SLX1 homolog OS=Cucumis sativus GN=Csa_1G533630 PE=3 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 9.9e-30
Identity = 70/85 (82.35%), Postives = 73/85 (85.88%), Query Frame = 1


Query: 1  MRKRKEKSEISEATAVAEEEEKEDDEDEGSGNESNGFFSCYLLASVCPCFKGHTYIGFTV 60
          MRKRKEK EI + T    +EEKEDDE+E  GNE NGFFSCYLLAS CP FKGHTYIGFTV
Sbjct: 1  MRKRKEKPEICKTT----DEEKEDDEEEERGNEVNGFFSCYLLASACPRFKGHTYIGFTV 60

Query: 61 NPKRRIRQHNGEIRCGAWRTKRKRP 86
          NPKRRIRQHNGEIRCGAWRTKRKRP
Sbjct: 61 NPKRRIRQHNGEIRCGAWRTKRKRP 81

[Close]

BLAST of CmoCh01G007530 vs. TrEMBL
Match: A0A151UA25_CAJCA (Structure-specific endonuclease subunit SLX1 OS=Cajanus cajan GN=KK1_020383 PE=3 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 2.4e-20
Identity = 55/91 (60.44%), Postives = 72/91 (79.12%), Query Frame = 1


Query: 1  MRKRKEKSEISEATAVAEEEEKEDD------EDEGSGNESNGFFSCYLLASVCPCFKGHT 60
          MRK+K  S  + AT V EEEE+E++      +++  G+E +GF++CYLLAS+ P +KGHT
Sbjct: 1  MRKKKVASA-AHATVVKEEEEEEEEHSHDQNQNQKEGSEGDGFYACYLLASLSPRYKGHT 60

Query: 61 YIGFTVNPKRRIRQHNGEIRCGAWRTKRKRP 86
          YIGFTVNP+RRIRQHNGEI CGAWRTK++RP
Sbjct: 61 YIGFTVNPRRRIRQHNGEIGCGAWRTKKRRP 90

[Close]

BLAST of CmoCh01G007530 vs. TrEMBL
Match: A0A0B2SV39_GLYSO (Structure-specific endonuclease subunit SLX1 homolog OS=Glycine soja GN=glysoja_042264 PE=3 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 7.1e-20
Identity = 54/85 (63.53%), Postives = 66/85 (77.65%), Query Frame = 1


Query: 1  MRKRKEKSEISEATAVAEEEEKEDDEDEGSGNESNGFFSCYLLASVCPCFKGHTYIGFTV 60
          MRKRK       A+AV E+EE+ ++ED     E NGFF+CYLL S+ P +KGHTYIGFTV
Sbjct: 1  MRKRKG------ASAVVEDEEENENED----CEGNGFFACYLLTSLSPRYKGHTYIGFTV 60

Query: 61 NPKRRIRQHNGEIRCGAWRTKRKRP 86
          NP+RRIRQHNGEI CGAWRT+++RP
Sbjct: 61 NPRRRIRQHNGEIGCGAWRTRKRRP 75

[Close]

BLAST of CmoCh01G007530 vs. TrEMBL
Match: I1MZS6_SOYBN (Structure-specific endonuclease subunit SLX1 homolog OS=Glycine max GN=GLYMA_18G054900 PE=3 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 7.1e-20
Identity = 54/85 (63.53%), Postives = 66/85 (77.65%), Query Frame = 1


Query: 1  MRKRKEKSEISEATAVAEEEEKEDDEDEGSGNESNGFFSCYLLASVCPCFKGHTYIGFTV 60
          MRKRK       A+AV E+EE+ ++ED     E NGFF+CYLL S+ P +KGHTYIGFTV
Sbjct: 1  MRKRKG------ASAVVEDEEENENED----CEGNGFFACYLLTSLSPRYKGHTYIGFTV 60

Query: 61 NPKRRIRQHNGEIRCGAWRTKRKRP 86
          NP+RRIRQHNGEI CGAWRT+++RP
Sbjct: 61 NPRRRIRQHNGEIGCGAWRTRKRRP 75

[Close]

BLAST of CmoCh01G007530 vs. TrEMBL
Match: I1LLV5_SOYBN (Structure-specific endonuclease subunit SLX1 homolog OS=Glycine max GN=GLYMA_11G161200 PE=3 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 1.6e-19
Identity = 54/85 (63.53%), Postives = 62/85 (72.94%), Query Frame = 1


Query: 1  MRKRKEKSEISEATAVAEEEEKEDDEDEGSGNESNGFFSCYLLASVCPCFKGHTYIGFTV 60
          MRKRK  S I E  +V        +E+E    E NGFF+CYLL S+ P FKGHTYIGFTV
Sbjct: 1  MRKRKVASVIEEEESVQNHGHNNQNENEDC--EGNGFFACYLLTSLSPRFKGHTYIGFTV 60

Query: 61 NPKRRIRQHNGEIRCGAWRTKRKRP 86
          NP+RRIRQHNGEI CGAWRTK++RP
Sbjct: 61 NPRRRIRQHNGEIGCGAWRTKKRRP 83

[Close]

BLAST of CmoCh01G007530 vs. TAIR10
Match: AT2G30350.2 (AT2G30350.2 Excinuclease ABC, C subunit, N-terminal)

HSP 1 Score: 92.8 bits (229), Expect = 1.1e-19
Identity = 42/60 (70.00%), Postives = 48/60 (80.00%), Query Frame = 1


Query: 26 EDEGSGNESNGFFSCYLLASVCPCFKGHTYIGFTVNPKRRIRQHNGEIRCGAWRTKRKRP 85
          ED  +G +  GFF+CYLL S+ P  KG TYIGFTVNP+RRIRQHNGEI  GAWRTK+KRP
Sbjct: 16 EDGVTGKDGKGFFACYLLTSLSPRHKGQTYIGFTVNPRRRIRQHNGEITSGAWRTKKKRP 75

[Close]

BLAST of CmoCh01G007530 vs. NCBI nr
Match: gi|449471301|ref|XP_004153269.1| (PREDICTED: structure-specific endonuclease subunit SLX1 homolog [Cucumis sativus])

HSP 1 Score: 137.1 bits (344), Expect = 1.4e-29
Identity = 70/85 (82.35%), Postives = 73/85 (85.88%), Query Frame = 1


Query: 1  MRKRKEKSEISEATAVAEEEEKEDDEDEGSGNESNGFFSCYLLASVCPCFKGHTYIGFTV 60
          MRKRKEK EI + T    +EEKEDDE+E  GNE NGFFSCYLLAS CP FKGHTYIGFTV
Sbjct: 1  MRKRKEKPEICKTT----DEEKEDDEEEERGNEVNGFFSCYLLASACPRFKGHTYIGFTV 60

Query: 61 NPKRRIRQHNGEIRCGAWRTKRKRP 86
          NPKRRIRQHNGEIRCGAWRTKRKRP
Sbjct: 61 NPKRRIRQHNGEIRCGAWRTKRKRP 81

[Close]

BLAST of CmoCh01G007530 vs. NCBI nr
Match: gi|659114960|ref|XP_008457313.1| (PREDICTED: uncharacterized protein LOC103497035 [Cucumis melo])

HSP 1 Score: 133.7 bits (335), Expect = 1.6e-28
Identity = 68/87 (78.16%), Postives = 74/87 (85.06%), Query Frame = 1


Query: 1  MRKRKEKSEISE--ATAVAEEEEKEDDEDEGSGNESNGFFSCYLLASVCPCFKGHTYIGF 60
          MRKRKEK EI +  A  V +EE+++DDE+E  GN  NGFFSCYLLAS CP FKGHTYIGF
Sbjct: 1  MRKRKEKPEICKTMAAVVQDEEKEDDDEEEERGNGVNGFFSCYLLASACPRFKGHTYIGF 60

Query: 61 TVNPKRRIRQHNGEIRCGAWRTKRKRP 86
          TVNPKRRIRQHNGEIRCGAWRTKRKRP
Sbjct: 61 TVNPKRRIRQHNGEIRCGAWRTKRKRP 87

[Close]

BLAST of CmoCh01G007530 vs. NCBI nr
Match: gi|747067861|ref|XP_011080671.1| (PREDICTED: structure-specific endonuclease subunit SLX1-like [Sesamum indicum])

HSP 1 Score: 106.7 bits (265), Expect = 2.1e-20
Identity = 53/85 (62.35%), Postives = 62/85 (72.94%), Query Frame = 1


Query: 1  MRKRKEKSEISEATAVAEEEEKEDDEDEGSGNESNGFFSCYLLASVCPCFKGHTYIGFTV 60
          M KRKE+    E      E  +  +E+EG G +  GFF+CYLL S+CP FKGHTYIG+TV
Sbjct: 1  MGKRKERGVTQETPISNHERCENGEEEEGGGGKGAGFFACYLLTSLCPRFKGHTYIGYTV 60

Query: 61 NPKRRIRQHNGEIRCGAWRTKRKRP 86
          NP+RRIRQHNGEI  GAWRTKRKRP
Sbjct: 61 NPRRRIRQHNGEIGSGAWRTKRKRP 85

[Close]

BLAST of CmoCh01G007530 vs. NCBI nr
Match: gi|1012364975|gb|KYP76157.1| (Structure-specific endonuclease subunit SLX1 [Cajanus cajan])

HSP 1 Score: 105.9 bits (263), Expect = 3.5e-20
Identity = 55/91 (60.44%), Postives = 72/91 (79.12%), Query Frame = 1


Query: 1  MRKRKEKSEISEATAVAEEEEKEDD------EDEGSGNESNGFFSCYLLASVCPCFKGHT 60
          MRK+K  S  + AT V EEEE+E++      +++  G+E +GF++CYLLAS+ P +KGHT
Sbjct: 1  MRKKKVASA-AHATVVKEEEEEEEEHSHDQNQNQKEGSEGDGFYACYLLASLSPRYKGHT 60

Query: 61 YIGFTVNPKRRIRQHNGEIRCGAWRTKRKRP 86
          YIGFTVNP+RRIRQHNGEI CGAWRTK++RP
Sbjct: 61 YIGFTVNPRRRIRQHNGEIGCGAWRTKKRRP 90

[Close]

BLAST of CmoCh01G007530 vs. NCBI nr
Match: gi|828311393|ref|XP_012571281.1| (PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC101498619 [Cicer arietinum])

HSP 1 Score: 105.5 bits (262), Expect = 4.6e-20
Identity = 56/94 (59.57%), Postives = 70/94 (74.47%), Query Frame = 1


Query: 1  MRKRK----EKSEISEATAVAEEE-----EKEDDEDEGSGNESNGFFSCYLLASVCPCFK 60
          MRKRK     ++  + A++ AEEE     E + +++E  G +  GFF+CYLLAS+ P FK
Sbjct: 1  MRKRKGATRSETNFNSASSCAEEEQSVQVELQHNQNENEGGDGEGFFACYLLASLNPRFK 60

Query: 61 GHTYIGFTVNPKRRIRQHNGEIRCGAWRTKRKRP 86
          GHTYIGFTVNP+RRIRQHNGEI CGAWRTK+KRP
Sbjct: 61 GHTYIGFTVNPRRRIRQHNGEIGCGAWRTKKKRP 94

The following BLAST results are available for this feature:

BLAST of CmoCh01G007530 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SLX1_NEMVE	1.1e-10	57.14	Structure-specific endonuclease subunit SLX1 homolog OS=Nematostella vectensis G...	[more]
SLX1_CRYNB	2.1e-09	55.10	Structure-specific endonuclease subunit SLX1 OS=Cryptococcus neoformans var. neo...	[more]
SLX1_CRYNJ	2.1e-09	55.10	Structure-specific endonuclease subunit SLX1 OS=Cryptococcus neoformans var. neo...	[more]
SLX12_TRYCC	3.6e-09	61.70	Structure-specific endonuclease subunit SLX1 homolog 2 OS=Trypanosoma cruzi (str...	[more]
SLX11_TRYCC	3.6e-09	61.70	Structure-specific endonuclease subunit SLX1 homolog 1 OS=Trypanosoma cruzi (str...	[more]

BLAST of CmoCh01G007530 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0M0Y6_CUCSA	9.9e-30	82.35	Structure-specific endonuclease subunit SLX1 homolog OS=Cucumis sativus GN=Csa_1...	[more]
A0A151UA25_CAJCA	2.4e-20	60.44	Structure-specific endonuclease subunit SLX1 OS=Cajanus cajan GN=KK1_020383 PE=3...	[more]
A0A0B2SV39_GLYSO	7.1e-20	63.53	Structure-specific endonuclease subunit SLX1 homolog OS=Glycine soja GN=glysoja_...	[more]
I1MZS6_SOYBN	7.1e-20	63.53	Structure-specific endonuclease subunit SLX1 homolog OS=Glycine max GN=GLYMA_18G...	[more]
I1LLV5_SOYBN	1.6e-19	63.53	Structure-specific endonuclease subunit SLX1 homolog OS=Glycine max GN=GLYMA_11G...	[more]

BLAST of CmoCh01G007530 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G30350.2	1.1e-19	70.00	Excinuclease ABC, C subunit, N-terminal	[more]

BLAST of CmoCh01G007530 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449471301\|ref\|XP_004153269.1\|	1.4e-29	82.35	PREDICTED: structure-specific endonuclease subunit SLX1 homolog [Cucumis sativus...	[more]
gi\|659114960\|ref\|XP_008457313.1\|	1.6e-28	78.16	PREDICTED: uncharacterized protein LOC103497035 [Cucumis melo]	[more]
gi\|747067861\|ref\|XP_011080671.1\|	2.1e-20	62.35	PREDICTED: structure-specific endonuclease subunit SLX1-like [Sesamum indicum]	[more]
gi\|1012364975\|gb\|KYP76157.1\|	3.5e-20	60.44	Structure-specific endonuclease subunit SLX1 [Cajanus cajan]	[more]
gi\|828311393\|ref\|XP_012571281.1\|	4.6e-20	59.57	PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC101498619 [Cicer arie...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000305	GIY-YIG_endonuc

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006308	DNA catabolic process
biological_process	GO:0006310	DNA recombination
biological_process	GO:0006281	DNA repair
biological_process	GO:0090305	nucleic acid phosphodiester bond hydrolysis
biological_process	GO:0008150	biological_process
cellular_component	GO:0033557	Slx1-Slx4 complex
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0017108	5'-flap endonuclease activity
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh01G007530.1	CmoCh01G007530.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000305	GIY-YIG nuclease superfamily	PFAM	PF01541	GIY-YIG	coord: 41..81 score: 1.
IPR000305	GIY-YIG nuclease superfamily	PROFILE	PS50164	GIY_YIG	coord: 36..85 score: 13
None	No IPR available	unknown	Coil	Coil	coord: 3..23 scor
None	No IPR available	PANTHER	PTHR20208	FAMILY NOT NAMED	coord: 1..85 score: 1.3
None	No IPR available	PANTHER	PTHR20208:SF10	STRUCTURE-SPECIFIC ENDONUCLEASE SUBUNIT SLX1	coord: 1..85 score: 1.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh01G007530	Carg07021	Silver-seed gourd	carcmoB0708

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh01G007530	Wild cucumber (PI 183967)	cmocpiB421
CmoCh01G007530	Cucumber (Chinese Long) v2	cmocuB417
CmoCh01G007530	Melon (DHL92) v3.5.1	cmomeB382
CmoCh01G007530	Melon (DHL92) v3.5.1	cmomeB412
CmoCh01G007530	Watermelon (Charleston Gray)	cmowcgB382
CmoCh01G007530	Watermelon (Charleston Gray)	cmowcgB398
CmoCh01G007530	Watermelon (Charleston Gray)	cmowcgB403
CmoCh01G007530	Watermelon (97103) v1	cmowmB450
CmoCh01G007530	Watermelon (97103) v1	cmowmB408
CmoCh01G007530	Watermelon (97103) v1	cmowmB422
CmoCh01G007530	Cucurbita pepo (Zucchini)	cmocpeB441
CmoCh01G007530	Cucurbita pepo (Zucchini)	cmocpeB448
CmoCh01G007530	Bottle gourd (USVL1VR-Ls)	cmolsiB384
CmoCh01G007530	Bottle gourd (USVL1VR-Ls)	cmolsiB391
CmoCh01G007530	Bottle gourd (USVL1VR-Ls)	cmolsiB403
CmoCh01G007530	Bottle gourd (USVL1VR-Ls)	cmolsiB408
CmoCh01G007530	Cucumber (Gy14) v2	cgybcmoB099
CmoCh01G007530	Cucumber (Gy14) v2	cgybcmoB345
CmoCh01G007530	Cucumber (Gy14) v2	cgybcmoB480
CmoCh01G007530	Melon (DHL92) v3.6.1	cmomedB439
CmoCh01G007530	Melon (DHL92) v3.6.1	cmomedB470
CmoCh01G007530	Cucumber (Chinese Long) v3	cmocucB0501
CmoCh01G007530	Cucumber (Chinese Long) v3	cmocucB0538
CmoCh01G007530	Watermelon (97103) v2	cmowmbB424
CmoCh01G007530	Watermelon (97103) v2	cmowmbB443
CmoCh01G007530	Watermelon (97103) v2	cmowmbB451
CmoCh01G007530	Wax gourd	cmowgoB0575
CmoCh01G007530	Wax gourd	cmowgoB0579
CmoCh01G007530	Wax gourd	cmowgoB0590
CmoCh01G007530	Cucurbita moschata (Rifu)	cmocmoB173
CmoCh01G007530	Cucurbita moschata (Rifu)	cmocmoB205
CmoCh01G007530	Cucurbita moschata (Rifu)	cmocmoB359
CmoCh01G007530	Cucumber (Gy14) v1	cgycmoB0267
CmoCh01G007530	Cucumber (Gy14) v1	cgycmoB0502
CmoCh01G007530	Cucurbita maxima (Rimu)	cmacmoB226
CmoCh01G007530	Cucurbita maxima (Rimu)	cmacmoB468