CmoCh01G005410 (gene) Cucurbita moschata (Rifu)

NameCmoCh01G005410
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionABC transporter G family member 28
LocationCmo_Chr01 : 2667842 .. 2668324 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGGAAGGAGATGAAATTTGAGATTATCGCACTCTTCTCCATCTCCTTTTTGTTATTACTTTTGTTGCGATCCGTTCAGGCTCAGGAGGTTTCGGCTGCTACCGATCAGGAAGCTATCTCTGAAAGTGACTATGAAGAAGGAGGAGACGGAGAAGAAAGCGCTTTTGAGAAGGCAACTAGTAATATATTGGCGGAGGTTGTTAATGATCGGATTAAGAATTTCACCTCTGTTTTCAAGGATGATATTCAGGAGAATTTCGGTTTCTGCATCGCCGATGCGTCTGTTCCTTGCCTCTCCTTCCTTTCTTAATCTCCATCAATCTCTCATCGATTTCATTTCGTTTTTCTTGTTTCTAATTTGATTTGCAGGGATGCCGATTGGGATGGAGCCTTCAATTTCACTAATAACTCCGCCTTCATCTCTAATTGTGCTAAGAAAAGCAAAGGTACAATTAAACCTTACACTCATATTCCACTCTGA

mRNA sequence

ATGAGGAAGGAGATGAAATTTGAGATTATCGCACTCTTCTCCATCTCCTTTTTGTTATTACTTTTGTTGCGATCCGTTCAGGCTCAGGAGGTTTCGGCTGCTACCGATCAGGAAGCTATCTCTGAAAGTGACTATGAAGAAGGAGGAGACGGAGAAGAAAGCGCTTTTGAGAAGGCAACTAGTAATATATTGGCGGAGGTTGTTAATGATCGGATTAAGAATTTCACCTCTGTTTTCAAGGATGATATTCAGGAGAATTTCGGTTTCTGCATCGCCGATGCGGATGCCGATTGGGATGGAGCCTTCAATTTCACTAATAACTCCGCCTTCATCTCTAATTGTGCTAAGAAAAGCAAAGGTACAATTAAACCTTACACTCATATTCCACTCTGA

Coding sequence (CDS)

ATGAGGAAGGAGATGAAATTTGAGATTATCGCACTCTTCTCCATCTCCTTTTTGTTATTACTTTTGTTGCGATCCGTTCAGGCTCAGGAGGTTTCGGCTGCTACCGATCAGGAAGCTATCTCTGAAAGTGACTATGAAGAAGGAGGAGACGGAGAAGAAAGCGCTTTTGAGAAGGCAACTAGTAATATATTGGCGGAGGTTGTTAATGATCGGATTAAGAATTTCACCTCTGTTTTCAAGGATGATATTCAGGAGAATTTCGGTTTCTGCATCGCCGATGCGGATGCCGATTGGGATGGAGCCTTCAATTTCACTAATAACTCCGCCTTCATCTCTAATTGTGCTAAGAAAAGCAAAGGTACAATTAAACCTTACACTCATATTCCACTCTGA
BLAST of CmoCh01G005410 vs. Swiss-Prot
Match: AB28G_ARATH (ABC transporter G family member 28 OS=Arabidopsis thaliana GN=ABCG28 PE=3 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 3.0e-07
Identity = 26/69 (37.68%), Postives = 40/69 (57.97%), Query Frame = 1

Query: 52  EESAFEKATSNILAEVVNDRIKNFTSVFKDDIQENFGFCIADADADWDGAFNFTNNSAFI 111
           + S    A + +  + V D+I N T VF+DDI+   GFCI +   D++ AFNF+    F+
Sbjct: 34  DRSLDNPAANRLYNQFVFDKISNLTEVFEDDIKRELGFCITNVKEDYNEAFNFSTKPDFL 93

Query: 112 SNCAKKSKG 121
           + C K +KG
Sbjct: 94  NACGKTTKG 102

BLAST of CmoCh01G005410 vs. Swiss-Prot
Match: WBC30_ARATH (Putative white-brown complex homolog protein 30 OS=Arabidopsis thaliana GN=WBC30 PE=1 SV=3)

HSP 1 Score: 55.1 bits (131), Expect = 6.8e-07
Identity = 26/76 (34.21%), Postives = 44/76 (57.89%), Query Frame = 1

Query: 47  EGGDGEESAFEKATSNILAEVVNDRIKNFTSVFKDDIQENFGFCIADADADWDGAFNFTN 106
           +G D  ++   KA  ++   ++  R++N  +V K D+  + G+CI +   DW+ AFNF  
Sbjct: 31  DGDDYSKTGNPKALVSV-TNLIYTRLQNLKTVLKADVDRDLGYCIKNLKGDWNEAFNFDK 90

Query: 107 NSAFISNCAKKSKGTI 123
           N  F+SNC KK+ G +
Sbjct: 91  NLDFLSNCVKKNDGDL 105

BLAST of CmoCh01G005410 vs. Swiss-Prot
Match: AB24G_ARATH (ABC transporter G family member 24 OS=Arabidopsis thaliana GN=ABCG24 PE=2 SV=2)

HSP 1 Score: 52.4 bits (124), Expect = 4.4e-06
Identity = 26/73 (35.62%), Postives = 44/73 (60.27%), Query Frame = 1

Query: 51  GEESAFEK-ATSNILAEVVNDRIKNFTSVFKDDIQENFGFCIADADADWDGAFNFTNNSA 110
           G+ S F   A   ++ ++V   + N T+    ++     FC+ D DADW+ AFNF++N  
Sbjct: 50  GDTSDFNNPAVLPLVTQMVYRSLSNSTAALNRELGIRAKFCVKDPDADWNRAFNFSSNLN 109

Query: 111 FISNCAKKSKGTI 123
           F+S+C KK++G+I
Sbjct: 110 FLSSCIKKTQGSI 122

BLAST of CmoCh01G005410 vs. TrEMBL
Match: A0A0A0LVG3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G118370 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 2.4e-19
Identity = 71/133 (53.38%), Postives = 86/133 (64.66%), Query Frame = 1

Query: 1   MRKEMKFEIIALFS----ISFLLLLLLRSVQAQEVSAATDQEAISESDYE---EGGDGEE 60
           M KE  F    LFS    IS  LLLLL SV         + +  S  DY+   EGG G  
Sbjct: 1   MNKEKTFHC-TLFSFSSSISIFLLLLLISV------GFVEGQDYSTEDYDYDDEGGGGGG 60

Query: 61  SA------FEKATSNILAEVVNDRIKNFTSVFKDDIQENFGFCIADADADWDGAFNFT-N 120
                    + AT +ILA++VNDRIKNFT+VFKDDIQ++FGFCI+DA+ADWDGAFNFT +
Sbjct: 61  GGGIGGLDLQSATGDILAKLVNDRIKNFTTVFKDDIQKHFGFCISDANADWDGAFNFTRS 120

BLAST of CmoCh01G005410 vs. TrEMBL
Match: A0A059D5K7_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_B02530 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 8.0e-15
Identity = 38/73 (52.05%), Postives = 54/73 (73.97%), Query Frame = 1

Query: 50  DGEESAFEKATSNILAEVVNDRIKNFTSVFKDDIQENFGFCIADADADWDGAFNFTNNSA 109
           DGE     +A + + A+++  ++ NFTSVF+ DI +NFGFCI D DADWDGAFNFT++  
Sbjct: 41  DGESQGENQAATQLFAQLLYSQVSNFTSVFRGDIAKNFGFCIQDVDADWDGAFNFTSDLT 100

Query: 110 FISNCAKKSKGTI 123
           F++ CAKK+KG +
Sbjct: 101 FLTACAKKTKGDL 113

BLAST of CmoCh01G005410 vs. TrEMBL
Match: B9GZM7_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s16740g PE=4 SV=2)

HSP 1 Score: 78.6 bits (192), Expect = 6.4e-12
Identity = 36/62 (58.06%), Postives = 44/62 (70.97%), Query Frame = 1

Query: 59  ATSNILAEVVNDRIKNFTSVFKDDIQENFGFCIADADADWDGAFNFTNNSAFISNCAKKS 118
           AT  + +E+V     NFTSVFK DI + FGFCI D D DW+ AFNF+  + FISNCAKK+
Sbjct: 46  ATQELFSELVYKSFSNFTSVFKQDIVKYFGFCITDVDEDWNMAFNFSKGTQFISNCAKKT 105

Query: 119 KG 121
           KG
Sbjct: 106 KG 107

BLAST of CmoCh01G005410 vs. TrEMBL
Match: B9STW9_RICCO (Protein white, putative OS=Ricinus communis GN=RCOM_0545350 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 1.9e-11
Identity = 33/64 (51.56%), Postives = 47/64 (73.44%), Query Frame = 1

Query: 59  ATSNILAEVVNDRIKNFTSVFKDDIQENFGFCIADADADWDGAFNFTNNSAFISNCAKKS 118
           A   + +++V +   NFTSVFK DI + FGFCI D D+DW+ AFNF+ ++ FI+NCAKK+
Sbjct: 98  AAEELFSQLVFNSFSNFTSVFKKDISKYFGFCITDVDSDWNMAFNFSKDTTFITNCAKKT 157

Query: 119 KGTI 123
           KG +
Sbjct: 158 KGDL 161

BLAST of CmoCh01G005410 vs. TrEMBL
Match: B9GMN0_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s13590g PE=4 SV=2)

HSP 1 Score: 76.6 bits (187), Expect = 2.4e-11
Identity = 38/78 (48.72%), Postives = 53/78 (67.95%), Query Frame = 1

Query: 45  YEEGGDGEESAFEKATSNILAEVVNDRIKNFTSVFKDDIQENFGFCIADADADWDGAFNF 104
           Y +  DG +++   AT ++ +E+V +   NFTSVFK DI + FGFCI D D DW+ AFNF
Sbjct: 34  YCQQSDGNDNS--TATEDLFSELVYNSFSNFTSVFKQDIAKYFGFCIIDVDEDWNMAFNF 93

Query: 105 TNNSAFISNCAKKSKGTI 123
           +  + FIS+CAKK+ G I
Sbjct: 94  SKKTQFISDCAKKTNGDI 109

BLAST of CmoCh01G005410 vs. TAIR10
Match: AT5G60740.1 (AT5G60740.1 ABC transporter family protein)

HSP 1 Score: 56.2 bits (134), Expect = 1.7e-08
Identity = 26/69 (37.68%), Postives = 40/69 (57.97%), Query Frame = 1

Query: 52  EESAFEKATSNILAEVVNDRIKNFTSVFKDDIQENFGFCIADADADWDGAFNFTNNSAFI 111
           + S    A + +  + V D+I N T VF+DDI+   GFCI +   D++ AFNF+    F+
Sbjct: 34  DRSLDNPAANRLYNQFVFDKISNLTEVFEDDIKRELGFCITNVKEDYNEAFNFSTKPDFL 93

Query: 112 SNCAKKSKG 121
           + C K +KG
Sbjct: 94  NACGKTTKG 102

BLAST of CmoCh01G005410 vs. TAIR10
Match: AT2G37010.1 (AT2G37010.1 non-intrinsic ABC protein 12)

HSP 1 Score: 55.1 bits (131), Expect = 3.8e-08
Identity = 26/76 (34.21%), Postives = 44/76 (57.89%), Query Frame = 1

Query: 47  EGGDGEESAFEKATSNILAEVVNDRIKNFTSVFKDDIQENFGFCIADADADWDGAFNFTN 106
           +G D  ++   KA  ++   ++  R++N  +V K D+  + G+CI +   DW+ AFNF  
Sbjct: 31  DGDDYSKTGNPKALVSV-TNLIYTRLQNLKTVLKADVDRDLGYCIKNLKGDWNEAFNFDK 90

Query: 107 NSAFISNCAKKSKGTI 123
           N  F+SNC KK+ G +
Sbjct: 91  NLDFLSNCVKKNDGDL 105

BLAST of CmoCh01G005410 vs. TAIR10
Match: AT1G53390.1 (AT1G53390.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein)

HSP 1 Score: 52.4 bits (124), Expect = 2.5e-07
Identity = 26/73 (35.62%), Postives = 44/73 (60.27%), Query Frame = 1

Query: 51  GEESAFEK-ATSNILAEVVNDRIKNFTSVFKDDIQENFGFCIADADADWDGAFNFTNNSA 110
           G+ S F   A   ++ ++V   + N T+    ++     FC+ D DADW+ AFNF++N  
Sbjct: 50  GDTSDFNNPAVLPLVTQMVYRSLSNSTAALNRELGIRAKFCVKDPDADWNRAFNFSSNLN 109

Query: 111 FISNCAKKSKGTI 123
           F+S+C KK++G+I
Sbjct: 110 FLSSCIKKTQGSI 122

BLAST of CmoCh01G005410 vs. NCBI nr
Match: gi|778659136|ref|XP_011653884.1| (PREDICTED: ABC transporter G family member 28 [Cucumis sativus])

HSP 1 Score: 103.2 bits (256), Expect = 3.5e-19
Identity = 71/133 (53.38%), Postives = 86/133 (64.66%), Query Frame = 1

Query: 1   MRKEMKFEIIALFS----ISFLLLLLLRSVQAQEVSAATDQEAISESDYE---EGGDGEE 60
           M KE  F    LFS    IS  LLLLL SV         + +  S  DY+   EGG G  
Sbjct: 1   MNKEKTFHC-TLFSFSSSISIFLLLLLISV------GFVEGQDYSTEDYDYDDEGGGGGG 60

Query: 61  SA------FEKATSNILAEVVNDRIKNFTSVFKDDIQENFGFCIADADADWDGAFNFT-N 120
                    + AT +ILA++VNDRIKNFT+VFKDDIQ++FGFCI+DA+ADWDGAFNFT +
Sbjct: 61  GGGIGGLDLQSATGDILAKLVNDRIKNFTTVFKDDIQKHFGFCISDANADWDGAFNFTRS 120

BLAST of CmoCh01G005410 vs. NCBI nr
Match: gi|700209721|gb|KGN64817.1| (hypothetical protein Csa_1G118370 [Cucumis sativus])

HSP 1 Score: 103.2 bits (256), Expect = 3.5e-19
Identity = 71/133 (53.38%), Postives = 86/133 (64.66%), Query Frame = 1

Query: 1   MRKEMKFEIIALFS----ISFLLLLLLRSVQAQEVSAATDQEAISESDYE---EGGDGEE 60
           M KE  F    LFS    IS  LLLLL SV         + +  S  DY+   EGG G  
Sbjct: 1   MNKEKTFHC-TLFSFSSSISIFLLLLLISV------GFVEGQDYSTEDYDYDDEGGGGGG 60

Query: 61  SA------FEKATSNILAEVVNDRIKNFTSVFKDDIQENFGFCIADADADWDGAFNFT-N 120
                    + AT +ILA++VNDRIKNFT+VFKDDIQ++FGFCI+DA+ADWDGAFNFT +
Sbjct: 61  GGGIGGLDLQSATGDILAKLVNDRIKNFTTVFKDDIQKHFGFCISDANADWDGAFNFTRS 120

BLAST of CmoCh01G005410 vs. NCBI nr
Match: gi|659071991|ref|XP_008462934.1| (PREDICTED: ABC transporter G family member 28 [Cucumis melo])

HSP 1 Score: 97.8 bits (242), Expect = 1.5e-17
Identity = 61/116 (52.59%), Postives = 80/116 (68.97%), Query Frame = 1

Query: 7   FEIIALFSIS---FLLLLLLRSVQAQEVSAATDQEAISESDYEEGGDGEESAFEKATSNI 66
           F I    SIS   FLLL+ +  V+ Q+ S         + DYE+ G  +    + A+ +I
Sbjct: 14  FSISISISISISIFLLLISVGFVEGQDYST-------EDYDYEDQGGLD---LQSASGDI 73

Query: 67  LAEVVNDRIKNFTSVFKDDIQENFGFCIADADADWDGAFNFTNNSA-FISNCAKKS 119
           LA++VN RIKNFT+VFKDDIQ++FGFCI+DA+ADWDGAFNFT NS+ FIS CAKK+
Sbjct: 74  LADLVNARIKNFTTVFKDDIQKHFGFCISDANADWDGAFNFTRNSSQFISKCAKKN 119

BLAST of CmoCh01G005410 vs. NCBI nr
Match: gi|702285737|ref|XP_010046443.1| (PREDICTED: ABC transporter G family member 28 [Eucalyptus grandis])

HSP 1 Score: 88.2 bits (217), Expect = 1.2e-14
Identity = 38/73 (52.05%), Postives = 54/73 (73.97%), Query Frame = 1

Query: 50  DGEESAFEKATSNILAEVVNDRIKNFTSVFKDDIQENFGFCIADADADWDGAFNFTNNSA 109
           DGE     +A + + A+++  ++ NFTSVF+ DI +NFGFCI D DADWDGAFNFT++  
Sbjct: 41  DGESQGENQAATQLFAQLLYSQVSNFTSVFRGDIAKNFGFCIQDVDADWDGAFNFTSDLT 100

Query: 110 FISNCAKKSKGTI 123
           F++ CAKK+KG +
Sbjct: 101 FLTACAKKTKGDL 113

BLAST of CmoCh01G005410 vs. NCBI nr
Match: gi|743819093|ref|XP_011020796.1| (PREDICTED: ABC transporter G family member 28-like isoform X1 [Populus euphratica])

HSP 1 Score: 79.3 bits (194), Expect = 5.4e-12
Identity = 36/62 (58.06%), Postives = 45/62 (72.58%), Query Frame = 1

Query: 59  ATSNILAEVVNDRIKNFTSVFKDDIQENFGFCIADADADWDGAFNFTNNSAFISNCAKKS 118
           AT  + +E+V +   NFTSVFK DI + FGFCI D D DW+ AFNF+  + FISNCAKK+
Sbjct: 46  ATQELFSELVYNSFSNFTSVFKQDIVKYFGFCITDVDEDWNMAFNFSKGTQFISNCAKKT 105

Query: 119 KG 121
           KG
Sbjct: 106 KG 107

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
AB28G_ARATH3.0e-0737.68ABC transporter G family member 28 OS=Arabidopsis thaliana GN=ABCG28 PE=3 SV=1[more]
WBC30_ARATH6.8e-0734.21Putative white-brown complex homolog protein 30 OS=Arabidopsis thaliana GN=WBC30... [more]
AB24G_ARATH4.4e-0635.62ABC transporter G family member 24 OS=Arabidopsis thaliana GN=ABCG24 PE=2 SV=2[more]
Match NameE-valueIdentityDescription
A0A0A0LVG3_CUCSA2.4e-1953.38Uncharacterized protein OS=Cucumis sativus GN=Csa_1G118370 PE=4 SV=1[more]
A0A059D5K7_EUCGR8.0e-1552.05Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_B02530 PE=4 SV=1[more]
B9GZM7_POPTR6.4e-1258.06Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s16740g PE=4 SV=2[more]
B9STW9_RICCO1.9e-1151.56Protein white, putative OS=Ricinus communis GN=RCOM_0545350 PE=4 SV=1[more]
B9GMN0_POPTR2.4e-1148.72Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s13590g PE=4 SV=2[more]
Match NameE-valueIdentityDescription
AT5G60740.11.7e-0837.68 ABC transporter family protein[more]
AT2G37010.13.8e-0834.21 non-intrinsic ABC protein 12[more]
AT1G53390.12.5e-0735.62 P-loop containing nucleoside triphosphate hydrolases superfamily pro... [more]
Match NameE-valueIdentityDescription
gi|778659136|ref|XP_011653884.1|3.5e-1953.38PREDICTED: ABC transporter G family member 28 [Cucumis sativus][more]
gi|700209721|gb|KGN64817.1|3.5e-1953.38hypothetical protein Csa_1G118370 [Cucumis sativus][more]
gi|659071991|ref|XP_008462934.1|1.5e-1752.59PREDICTED: ABC transporter G family member 28 [Cucumis melo][more]
gi|702285737|ref|XP_010046443.1|1.2e-1452.05PREDICTED: ABC transporter G family member 28 [Eucalyptus grandis][more]
gi|743819093|ref|XP_011020796.1|5.4e-1258.06PREDICTED: ABC transporter G family member 28-like isoform X1 [Populus euphratic... [more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008152 metabolic process
biological_process GO:0044765 single-organism transport
cellular_component GO:0005575 cellular_component
molecular_function GO:0016887 ATPase activity
molecular_function GO:0005524 ATP binding

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh01G005410.1CmoCh01G005410.1mRNA


The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh01G005410Cp4.1LG02g12620Cucurbita pepo (Zucchini)cmocpeB449
The following gene(s) are paralogous to this gene:

None