CmoCh01G005410 (gene) Cucurbita moschata (Rifu)
The following sequences are available for this feature:
Legend: CDSexon Hold the cursor over a type above to highlight its positions in the sequence below.ATGAGGAAGGAGATGAAATTTGAGATTATCGCACTCTTCTCCATCTCCTTTTTGTTATTACTTTTGTTGCGATCCGTTCAGGCTCAGGAGGTTTCGGCTGCTACCGATCAGGAAGCTATCTCTGAAAGTGACTATGAAGAAGGAGGAGACGGAGAAGAAAGCGCTTTTGAGAAGGCAACTAGTAATATATTGGCGGAGGTTGTTAATGATCGGATTAAGAATTTCACCTCTGTTTTCAAGGATGATATTCAGGAGAATTTCGGTTTCTGCATCGCCGATGCGTCTGTTCCTTGCCTCTCCTTCCTTTCTTAATCTCCATCAATCTCTCATCGATTTCATTTCGTTTTTCTTGTTTCTAATTTGATTTGCAGGGATGCCGATTGGGATGGAGCCTTCAATTTCACTAATAACTCCGCCTTCATCTCTAATTGTGCTAAGAAAAGCAAAGGTACAATTAAACCTTACACTCATATTCCACTCTGA ATGAGGAAGGAGATGAAATTTGAGATTATCGCACTCTTCTCCATCTCCTTTTTGTTATTACTTTTGTTGCGATCCGTTCAGGCTCAGGAGGTTTCGGCTGCTACCGATCAGGAAGCTATCTCTGAAAGTGACTATGAAGAAGGAGGAGACGGAGAAGAAAGCGCTTTTGAGAAGGCAACTAGTAATATATTGGCGGAGGTTGTTAATGATCGGATTAAGAATTTCACCTCTGTTTTCAAGGATGATATTCAGGAGAATTTCGGTTTCTGCATCGCCGATGCGGATGCCGATTGGGATGGAGCCTTCAATTTCACTAATAACTCCGCCTTCATCTCTAATTGTGCTAAGAAAAGCAAAGGTACAATTAAACCTTACACTCATATTCCACTCTGA ATGAGGAAGGAGATGAAATTTGAGATTATCGCACTCTTCTCCATCTCCTTTTTGTTATTACTTTTGTTGCGATCCGTTCAGGCTCAGGAGGTTTCGGCTGCTACCGATCAGGAAGCTATCTCTGAAAGTGACTATGAAGAAGGAGGAGACGGAGAAGAAAGCGCTTTTGAGAAGGCAACTAGTAATATATTGGCGGAGGTTGTTAATGATCGGATTAAGAATTTCACCTCTGTTTTCAAGGATGATATTCAGGAGAATTTCGGTTTCTGCATCGCCGATGCGGATGCCGATTGGGATGGAGCCTTCAATTTCACTAATAACTCCGCCTTCATCTCTAATTGTGCTAAGAAAAGCAAAGGTACAATTAAACCTTACACTCATATTCCACTCTGA
BLAST of CmoCh01G005410 vs. Swiss-Prot
Match: AB28G_ARATH (ABC transporter G family member 28 OS=Arabidopsis thaliana GN=ABCG28 PE=3 SV=1) HSP 1 Score: 56.2 bits (134), Expect = 3.0e-07 Identity = 26/69 (37.68%), Postives = 40/69 (57.97%), Query Frame = 1
BLAST of CmoCh01G005410 vs. Swiss-Prot
Match: WBC30_ARATH (Putative white-brown complex homolog protein 30 OS=Arabidopsis thaliana GN=WBC30 PE=1 SV=3) HSP 1 Score: 55.1 bits (131), Expect = 6.8e-07 Identity = 26/76 (34.21%), Postives = 44/76 (57.89%), Query Frame = 1
BLAST of CmoCh01G005410 vs. Swiss-Prot
Match: AB24G_ARATH (ABC transporter G family member 24 OS=Arabidopsis thaliana GN=ABCG24 PE=2 SV=2) HSP 1 Score: 52.4 bits (124), Expect = 4.4e-06 Identity = 26/73 (35.62%), Postives = 44/73 (60.27%), Query Frame = 1
BLAST of CmoCh01G005410 vs. TrEMBL
Match: A0A0A0LVG3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G118370 PE=4 SV=1) HSP 1 Score: 103.2 bits (256), Expect = 2.4e-19 Identity = 71/133 (53.38%), Postives = 86/133 (64.66%), Query Frame = 1
BLAST of CmoCh01G005410 vs. TrEMBL
Match: A0A059D5K7_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_B02530 PE=4 SV=1) HSP 1 Score: 88.2 bits (217), Expect = 8.0e-15 Identity = 38/73 (52.05%), Postives = 54/73 (73.97%), Query Frame = 1
BLAST of CmoCh01G005410 vs. TrEMBL
Match: B9GZM7_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s16740g PE=4 SV=2) HSP 1 Score: 78.6 bits (192), Expect = 6.4e-12 Identity = 36/62 (58.06%), Postives = 44/62 (70.97%), Query Frame = 1
BLAST of CmoCh01G005410 vs. TrEMBL
Match: B9STW9_RICCO (Protein white, putative OS=Ricinus communis GN=RCOM_0545350 PE=4 SV=1) HSP 1 Score: 77.0 bits (188), Expect = 1.9e-11 Identity = 33/64 (51.56%), Postives = 47/64 (73.44%), Query Frame = 1
BLAST of CmoCh01G005410 vs. TrEMBL
Match: B9GMN0_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s13590g PE=4 SV=2) HSP 1 Score: 76.6 bits (187), Expect = 2.4e-11 Identity = 38/78 (48.72%), Postives = 53/78 (67.95%), Query Frame = 1
BLAST of CmoCh01G005410 vs. TAIR10
Match: AT5G60740.1 (AT5G60740.1 ABC transporter family protein) HSP 1 Score: 56.2 bits (134), Expect = 1.7e-08 Identity = 26/69 (37.68%), Postives = 40/69 (57.97%), Query Frame = 1
BLAST of CmoCh01G005410 vs. TAIR10
Match: AT2G37010.1 (AT2G37010.1 non-intrinsic ABC protein 12) HSP 1 Score: 55.1 bits (131), Expect = 3.8e-08 Identity = 26/76 (34.21%), Postives = 44/76 (57.89%), Query Frame = 1
BLAST of CmoCh01G005410 vs. TAIR10
Match: AT1G53390.1 (AT1G53390.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein) HSP 1 Score: 52.4 bits (124), Expect = 2.5e-07 Identity = 26/73 (35.62%), Postives = 44/73 (60.27%), Query Frame = 1
BLAST of CmoCh01G005410 vs. NCBI nr
Match: gi|778659136|ref|XP_011653884.1| (PREDICTED: ABC transporter G family member 28 [Cucumis sativus]) HSP 1 Score: 103.2 bits (256), Expect = 3.5e-19 Identity = 71/133 (53.38%), Postives = 86/133 (64.66%), Query Frame = 1
BLAST of CmoCh01G005410 vs. NCBI nr
Match: gi|700209721|gb|KGN64817.1| (hypothetical protein Csa_1G118370 [Cucumis sativus]) HSP 1 Score: 103.2 bits (256), Expect = 3.5e-19 Identity = 71/133 (53.38%), Postives = 86/133 (64.66%), Query Frame = 1
BLAST of CmoCh01G005410 vs. NCBI nr
Match: gi|659071991|ref|XP_008462934.1| (PREDICTED: ABC transporter G family member 28 [Cucumis melo]) HSP 1 Score: 97.8 bits (242), Expect = 1.5e-17 Identity = 61/116 (52.59%), Postives = 80/116 (68.97%), Query Frame = 1
BLAST of CmoCh01G005410 vs. NCBI nr
Match: gi|702285737|ref|XP_010046443.1| (PREDICTED: ABC transporter G family member 28 [Eucalyptus grandis]) HSP 1 Score: 88.2 bits (217), Expect = 1.2e-14 Identity = 38/73 (52.05%), Postives = 54/73 (73.97%), Query Frame = 1
BLAST of CmoCh01G005410 vs. NCBI nr
Match: gi|743819093|ref|XP_011020796.1| (PREDICTED: ABC transporter G family member 28-like isoform X1 [Populus euphratica]) HSP 1 Score: 79.3 bits (194), Expect = 5.4e-12 Identity = 36/62 (58.06%), Postives = 45/62 (72.58%), Query Frame = 1
The following BLAST results are available for this feature:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: |