CmoCh01G004980 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh01G004980
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	RING zinc finger protein-like
Location	Cmo_Chr01 : 2414911 .. 2415705 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGGAATTTTGCTTCCAATTGTGTGGCTGGATGTACTGGACTAAAGAGCAGCTCCCAAAAACTGACTCATACCGCCACAGAGTGTTCTGATGATGAGGTATCTTCAGATGGTAGGGAGGAGGTGCTAGAGTGTCCAATATGCTGGGAATCCTTCAACATTGTTGAGAATGTGCCCCATGTTTTATGGTGTGGCCATACTCTATGCAAGAATTGCATCTTGGGATTGCAGTGGGCTGTGGTGAAGTTCCCGACATTACCCGTTCAGCTTCCGCTTTTCATATCCTGCCCATGGTGCAACCTCCTATCCTTCCGCCTAGTTTATAAAGGAAACCTCAAATTCCCTTGCAAGAATTACTTCCTTTTGTGGATGGTTGAGAACATGAATGGCGAAAGGGTGAAATCTCGTTCTGATTTCTCTGGGGATCAACTAGTCTTCCCCGTGAGCGGAAATTCAAGGAGTAATCAAGTCGGTCACAGTAACCTTAGGAGGGGACACCATGTTCGTCAATTAGATCCACAACGACCAAACAACGCCAATAGCCATGCCCATAGCTTTAATCTGGAGAGACTGAAATCATCTCTCTGCAAATTGCTCGTGTTCTTCGTTCACTTGACAGCTAAATTTCCATTGGTGATCATCTTCCTCCTCATCATCCTATACGCCGTGCCTGCCAGTGCAGCAATCTTGGCTCTGTACATATTAGTCACCGTCCTTTTCGCTCTCCCGTCGTTTCTCATATTGTATTTTGCATACCCCAGTCTGGATTGGCTGATGAGGGAGATCATCACTTAA

mRNA sequence

ATGTGGAATTTTGCTTCCAATTGTGTGGCTGGATGTACTGGACTAAAGAGCAGCTCCCAAAAACTGACTCATACCGCCACAGAGTGTTCTGATGATGAGGTATCTTCAGATGGTAGGGAGGAGGTGCTAGAGTGTCCAATATGCTGGGAATCCTTCAACATTGTTGAGAATGTGCCCCATGTTTTATGGTGTGGCCATACTCTATGCAAGAATTGCATCTTGGGATTGCAGTGGGCTGTGGTGAAGTTCCCGACATTACCCGTTCAGCTTCCGCTTTTCATATCCTGCCCATGGTGCAACCTCCTATCCTTCCGCCTAGTTTATAAAGGAAACCTCAAATTCCCTTGCAAGAATTACTTCCTTTTGTGGATGGTTGAGAACATGAATGGCGAAAGGGTGAAATCTCGTTCTGATTTCTCTGGGGATCAACTAGTCTTCCCCGTGAGCGGAAATTCAAGGAGTAATCAAGTCGGTCACAGTAACCTTAGGAGGGGACACCATGTTCGTCAATTAGATCCACAACGACCAAACAACGCCAATAGCCATGCCCATAGCTTTAATCTGGAGAGACTGAAATCATCTCTCTGCAAATTGCTCGTGTTCTTCGTTCACTTGACAGCTAAATTTCCATTGGTGATCATCTTCCTCCTCATCATCCTATACGCCGTGCCTGCCAGTGCAGCAATCTTGGCTCTGTACATATTAGTCACCGTCCTTTTCGCTCTCCCGTCGTTTCTCATATTGTATTTTGCATACCCCAGTCTGGATTGGCTGATGAGGGAGATCATCACTTAA

Coding sequence (CDS)

ATGTGGAATTTTGCTTCCAATTGTGTGGCTGGATGTACTGGACTAAAGAGCAGCTCCCAAAAACTGACTCATACCGCCACAGAGTGTTCTGATGATGAGGTATCTTCAGATGGTAGGGAGGAGGTGCTAGAGTGTCCAATATGCTGGGAATCCTTCAACATTGTTGAGAATGTGCCCCATGTTTTATGGTGTGGCCATACTCTATGCAAGAATTGCATCTTGGGATTGCAGTGGGCTGTGGTGAAGTTCCCGACATTACCCGTTCAGCTTCCGCTTTTCATATCCTGCCCATGGTGCAACCTCCTATCCTTCCGCCTAGTTTATAAAGGAAACCTCAAATTCCCTTGCAAGAATTACTTCCTTTTGTGGATGGTTGAGAACATGAATGGCGAAAGGGTGAAATCTCGTTCTGATTTCTCTGGGGATCAACTAGTCTTCCCCGTGAGCGGAAATTCAAGGAGTAATCAAGTCGGTCACAGTAACCTTAGGAGGGGACACCATGTTCGTCAATTAGATCCACAACGACCAAACAACGCCAATAGCCATGCCCATAGCTTTAATCTGGAGAGACTGAAATCATCTCTCTGCAAATTGCTCGTGTTCTTCGTTCACTTGACAGCTAAATTTCCATTGGTGATCATCTTCCTCCTCATCATCCTATACGCCGTGCCTGCCAGTGCAGCAATCTTGGCTCTGTACATATTAGTCACCGTCCTTTTCGCTCTCCCGTCGTTTCTCATATTGTATTTTGCATACCCCAGTCTGGATTGGCTGATGAGGGAGATCATCACTTAA

Homology

[Close]

BLAST of CmoCh01G004980 vs. TrEMBL
Match: A0A0A0K8G4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G042350 PE=4 SV=1)

HSP 1 Score: 483.0 bits (1242), Expect = 2.3e-133
Identity = 244/265 (92.08%), Postives = 253/265 (95.47%), Query Frame = 1


Query: 1   MWNFASNCVAGCTGLKSSSQKLTHTATECSDDEVSSDGREEVLECPICWESFNIVENVPH 60
           MWNFASNCVAGC GLKSSS+K +HTATECSDDE+SSDGREEVLECPICWESFNIVENVPH
Sbjct: 1   MWNFASNCVAGCAGLKSSSRKSSHTATECSDDELSSDGREEVLECPICWESFNIVENVPH 60

Query: 61  VLWCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLLSFRLVYKGNLKFPCKNYF 120
           VLWCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLLSFRLVYKGNLKFPCKNYF
Sbjct: 61  VLWCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLLSFRLVYKGNLKFPCKNYF 120

Query: 121 LLWMVENMNGERVKSRSDFSGDQLVFPVSG-NSRSNQVGHSNLRRGHHVRQLDPQRPNNA 180
           LLWMVEN+N ERVKS S FSGDQLVFPVSG +SR NQV H+NLRRGHHVRQLD Q PNNA
Sbjct: 121 LLWMVENINVERVKSHSAFSGDQLVFPVSGTSSRGNQVSHNNLRRGHHVRQLDSQGPNNA 180

Query: 181 NSHAHSFNLERLKSSLCKLLVFFVHLTAKFPLVIIFLLIILYAVPASAAILALYILVTVL 240
           NSH HSFNLERL+SSL KLLVFFVHLTAKFPLVIIFLLI+LYAVPASAAILALY+LVTVL
Sbjct: 181 NSHFHSFNLERLQSSLRKLLVFFVHLTAKFPLVIIFLLIVLYAVPASAAILALYVLVTVL 240

Query: 241 FALPSFLILYFAYPSLDWLMREIIT 265
           FALPSFLILYFAYPSLDWLMREIIT
Sbjct: 241 FALPSFLILYFAYPSLDWLMREIIT 265

[Close]

BLAST of CmoCh01G004980 vs. TrEMBL
Match: M5WTL5_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010047mg PE=4 SV=1)

HSP 1 Score: 380.2 bits (975), Expect = 2.1e-102
Identity = 198/267 (74.16%), Postives = 228/267 (85.39%), Query Frame = 1


Query: 1   MWNFASNCVAGCTGLKSSSQKLTHTATECSDDEVSSD-GREEVLECPICWESFNIVENVP 60
           MWNFAS+C+AG  GLK+ S + T  A+ECSDDE SS  GREE LECPICWESFNIVENVP
Sbjct: 1   MWNFASSCIAGSVGLKNDSLRPTQAASECSDDEGSSVVGREEGLECPICWESFNIVENVP 60

Query: 61  HVLWCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLLSFRLVYKGNLKFPCKNY 120
           +VLWCGHTLCKNCILGLQWAVVKFPTLP+QLPLFISCPWCNLLSFRLVY+GNLKFP KNY
Sbjct: 61  YVLWCGHTLCKNCILGLQWAVVKFPTLPIQLPLFISCPWCNLLSFRLVYRGNLKFPRKNY 120

Query: 121 FLLWMVENMNGERVKSRSDFSGD-QLVFPVSGN-SRSNQVGHSNLRRGHHVRQLDPQRPN 180
           FLLWMVE+MNG+R+KS S FSGD   V+P +GN S  +QV H++ RR HH+R ++P   N
Sbjct: 121 FLLWMVESMNGDRIKSHSTFSGDNHAVWPANGNASVGSQVSHTHHRRVHHIRHIEPSGQN 180

Query: 181 NANSHAHSFNLERLKSSLCKLLVFFVHLTAKFPLVIIFLLIILYAVPASAAILALYILVT 240
           + + + +  ++ERL SSL K L FFVHLTAKFPLV+IFLLIILY +PA AAILALYILVT
Sbjct: 181 HVHVNNY-LSVERLHSSLRKSLFFFVHLTAKFPLVVIFLLIILYVIPACAAILALYILVT 240

Query: 241 VLFALPSFLILYFAYPSLDWLMREIIT 265
           V+FALPSFL+LYFAYPSLDWL+REIIT
Sbjct: 241 VVFALPSFLLLYFAYPSLDWLVREIIT 266

[Close]

BLAST of CmoCh01G004980 vs. TrEMBL
Match: W9R4L8_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_020977 PE=4 SV=1)

HSP 1 Score: 374.0 bits (959), Expect = 1.5e-100
Identity = 201/268 (75.00%), Postives = 225/268 (83.96%), Query Frame = 1


Query: 1   MWNFASNCVAGCTGLKSSSQKLTHTATECSDDEVSSD-GREEVLECPICWESFNIVENVP 60
           MWNFAS+C+AG  GLK   QK   TA+ECSDDEVSS  GREE LECPIC ESFN+VENVP
Sbjct: 1   MWNFASSCIAGSVGLKKDPQKPAQTASECSDDEVSSVVGREEGLECPICCESFNLVENVP 60

Query: 61  HVLWCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLLSFRLVYKGNLKFPCKNY 120
           +VLWCGHTLCKNCILGLQWAVVKFPTLP+QLPLFISCPWCNLLSFRLVY+GNLKFP KNY
Sbjct: 61  YVLWCGHTLCKNCILGLQWAVVKFPTLPIQLPLFISCPWCNLLSFRLVYRGNLKFPHKNY 120

Query: 121 FLLWMVENMNGERVKSRSDFSGD-QLVFPVSGN-SRSNQVGH-SNLRRGHHVRQLDPQRP 180
           FLLWMVE+MNG+RVK+ S  S D    + V+G+ S + Q+   SNLRRGHHVR  +P R 
Sbjct: 121 FLLWMVESMNGDRVKTHSSQSEDHHPSWSVNGSTSMACQISSGSNLRRGHHVRHSEPSRS 180

Query: 181 NNANSHAHSFNLERLKSSLCKLLVFFVHLTAKFPLVIIFLLIILYAVPASAAILALYILV 240
           N     ++  +LERL SSL K L+FF HLTAKFPLV+IFLLII+YA+PASAAILALYILV
Sbjct: 181 NERVHLSNYLSLERLNSSLKKSLLFFAHLTAKFPLVVIFLLIIIYAIPASAAILALYILV 240

Query: 241 TVLFALPSFLILYFAYPSLDWLMREIIT 265
           TVLFALPSFLILYFAYPSLDWL+REIIT
Sbjct: 241 TVLFALPSFLILYFAYPSLDWLVREIIT 268

[Close]

BLAST of CmoCh01G004980 vs. TrEMBL
Match: C6TIH4_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_13G059100 PE=2 SV=1)

HSP 1 Score: 366.7 bits (940), Expect = 2.4e-98
Identity = 196/268 (73.13%), Postives = 215/268 (80.22%), Query Frame = 1


Query: 1   MWNFASNCVAGCTGLKSSSQKLTHTATECSDDEVSSDGREEVLECPICWESFNIVENVPH 60
           MWNFASNC+AG  GLK+ S K TH+A+ECSDDE S  GREE LECPICWESFNIVENVP+
Sbjct: 1   MWNFASNCIAGTVGLKNDS-KPTHSASECSDDENSVIGREEGLECPICWESFNIVENVPY 60

Query: 61  VLWCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLLSFRLVYKGNLKFPCKNYF 120
           VLWCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLLSFRLVY+GNLKFP KNYF
Sbjct: 61  VLWCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLLSFRLVYRGNLKFPRKNYF 120

Query: 121 LLWMVENMNGERVKSRSDFSGDQLVFPVSGN-SRSNQVGHSNLRRG---HHVRQLDPQRP 180
           LLWMVE+MNG+R KS S F GD     +  N +  +QV H NLRRG   H       Q  
Sbjct: 121 LLWMVESMNGDRGKSHSPFCGDNQQHSIKDNLTMGSQVSHGNLRRGLVRHPETSSSNQYH 180

Query: 181 NNANSHAHSFNLERLKSSLCKLLVFFVHLTAKFPLVIIFLLIILYAVPASAAILALYILV 240
            N  +H    N ER    L K L+FFV LTAKFPLVIIFLLI+LYA+PASAAILALY+LV
Sbjct: 181 GNTGNH---LNTERFHVYLRKSLIFFVQLTAKFPLVIIFLLIVLYAIPASAAILALYVLV 240

Query: 241 TVLFALPSFLILYFAYPSLDWLMREIIT 265
           T+LFALPSFLILYF+YPSLDWL+REIIT
Sbjct: 241 TILFALPSFLILYFSYPSLDWLVREIIT 264

[Close]

BLAST of CmoCh01G004980 vs. TrEMBL
Match: A0A0B2PHT9_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_032019 PE=4 SV=1)

HSP 1 Score: 366.7 bits (940), Expect = 2.4e-98
Identity = 196/268 (73.13%), Postives = 215/268 (80.22%), Query Frame = 1


Query: 1   MWNFASNCVAGCTGLKSSSQKLTHTATECSDDEVSSDGREEVLECPICWESFNIVENVPH 60
           MWNFASNC+AG  GLK+ S K TH+A+ECSDDE S  GREE LECPICWESFNIVENVP+
Sbjct: 1   MWNFASNCIAGTVGLKNDS-KPTHSASECSDDENSVIGREEGLECPICWESFNIVENVPY 60

Query: 61  VLWCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLLSFRLVYKGNLKFPCKNYF 120
           VLWCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLLSFRLVY+GNLKFP KNYF
Sbjct: 61  VLWCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLLSFRLVYRGNLKFPRKNYF 120

Query: 121 LLWMVENMNGERVKSRSDFSGDQLVFPVSGN-SRSNQVGHSNLRRG---HHVRQLDPQRP 180
           LLWMVE+MNG+R KS S F GD     +  N +  +QV H NLRRG   H       Q  
Sbjct: 121 LLWMVESMNGDRGKSHSPFCGDNQQHSIKDNLTMGSQVSHGNLRRGLVRHPETSSSNQYH 180

Query: 181 NNANSHAHSFNLERLKSSLCKLLVFFVHLTAKFPLVIIFLLIILYAVPASAAILALYILV 240
            N  +H    N ER    L K L+FFV LTAKFPLVIIFLLI+LYA+PASAAILALY+LV
Sbjct: 181 GNTGNH---LNTERFHVYLRKSLIFFVQLTAKFPLVIIFLLIVLYAIPASAAILALYVLV 240

Query: 241 TVLFALPSFLILYFAYPSLDWLMREIIT 265
           T+LFALPSFLILYF+YPSLDWL+REIIT
Sbjct: 241 TILFALPSFLILYFSYPSLDWLVREIIT 264

[Close]

BLAST of CmoCh01G004980 vs. TAIR10
Match: AT3G29270.1 (AT3G29270.1 RING/U-box superfamily protein)

HSP 1 Score: 310.5 bits (794), Expect = 1.0e-84
Identity = 167/265 (63.02%), Postives = 195/265 (73.58%), Query Frame = 1


Query: 1   MWNFASNCVAGCTGLKSSSQKLTHTATECSDDEVSSDG-REEVLECPICWESFNIVENVP 60
           MWN AS+ + G  G K+  ++  H   ECSDD+VSS G ++E LECPICWESFNIVENVP
Sbjct: 9   MWNLASSYLTGNIGPKNDIRRPVHAHAECSDDDVSSVGSKDEGLECPICWESFNIVENVP 68

Query: 61  HVLWCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLLSFRLVYKGNLKFPCKNY 120
           +VLWCGHT+CKNCILGLQWA+VK PT PVQLPLFISCPWCNLLSFRLV++G L+FP KNY
Sbjct: 69  YVLWCGHTMCKNCILGLQWAIVKLPTHPVQLPLFISCPWCNLLSFRLVFRGTLRFPHKNY 128

Query: 121 FLLWMVENMNGERVKSRSDFSGDQLVFPVSGNSRSNQVGHSNLRRGHHVRQLDPQRPNNA 180
           F+LWMVE MNGER  S      D        N  + +     L   HH  Q +P R  N 
Sbjct: 129 FVLWMVERMNGERRNSPGGAQTD------GNNDHTRETPSPCLHNRHHRSQPEPSRSVN- 188

Query: 181 NSHAHSFNLERLKSSLCKLLVFFVHLTAKFPLVIIFLLIILYAVPASAAILALYILVTVL 240
               H    + +++SL K LVFFV LTAKFPLV+IFLLIILYA+P SAAILA+YILVT+L
Sbjct: 189 ---DHRIPRDNIQTSLRKSLVFFVQLTAKFPLVVIFLLIILYAIPTSAAILAMYILVTLL 248

Query: 241 FALPSFLILYFAYPSLDWLMREIIT 265
            ALPSFLILYFAYP LDWL+REI+T
Sbjct: 249 LALPSFLILYFAYPCLDWLVREIVT 263

[Close]

BLAST of CmoCh01G004980 vs. TAIR10
Match: AT1G69330.1 (AT1G69330.1 RING/U-box superfamily protein)

HSP 1 Score: 250.8 bits (639), Expect = 9.6e-67
Identity = 142/271 (52.40%), Postives = 180/271 (66.42%), Query Frame = 1


Query: 1   MWNFASNCVAGCTGLKSSSQKLTHTATECSDDEVSSDGR-EEVLECPICWESFNIVENVP 60
           MW FASN V G  GLK S +     +++CSDDEVS+  R EE LECPICWESFNIVENVP
Sbjct: 1   MWGFASN-VIGSMGLKKSPKDSAQASSQCSDDEVSNISRDEEGLECPICWESFNIVENVP 60

Query: 61  HVLWCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLLSFRLVYKGNLKFPCKNY 120
           +VLWCGHTLC+NC+ GLQ AV++  +  +++P F+SCPWC LLSFR+VYKGNLKFP KN+
Sbjct: 61  YVLWCGHTLCQNCVFGLQSAVLRLSSQDIRIPFFVSCPWCQLLSFRIVYKGNLKFPRKNF 120

Query: 121 FLLWMVENMNGERVKSRSDFSGDQLVFPVSGNSRSNQVGHSNLRRGHHVRQ--------L 180
           FLLWMVE++NG+R       S   L   V+ N +S      ++  G+H           L
Sbjct: 121 FLLWMVESLNGDRTSHGDRTSHGSL---VTDNQQSAPTPRCSMSLGNHSSNNNLVARPLL 180

Query: 181 DPQRPNNANSHAHSFNLERLKSSLCKLLVFFVHLTAKFPLVIIFLLIILYAVPASAAILA 240
             Q  +    H HS    R   S  K L FF+  T+KFP VIIFLLI+ +A+P S  ILA
Sbjct: 181 RNQSTDLLPHHDHSNQPSRQLFSFHKSLDFFISFTSKFPFVIIFLLIVFFAIPGSLIILA 240

Query: 241 LYILVTVLFALPSFLILYFAYPSLDWLMREI 263
           LY L+T+LFA+P+ L+LYFAYP L+ L+ EI
Sbjct: 241 LYFLLTILFAVPAGLVLYFAYPILERLVNEI 267

[Close]

BLAST of CmoCh01G004980 vs. TAIR10
Match: AT1G74370.1 (AT1G74370.1 RING/U-box superfamily protein)

HSP 1 Score: 223.8 bits (569), Expect = 1.3e-58
Identity = 135/269 (50.19%), Postives = 172/269 (63.94%), Query Frame = 1


Query: 1   MWNFASNCVAGCTGLKSSSQKLTHTATECSDDEVSSDGR----EEVLECPICWESFNIVE 60
           MWN AS  +    G  S  ++        + D  S DGR    EE LECPICWESFN+VE
Sbjct: 1   MWNLASKSIR--EGFISKGEEAATKPRRATLDR-SGDGRKTTKEEKLECPICWESFNVVE 60

Query: 61  NVPHVLWCGHTLCKNCILGLQWAVV-KFPTLPVQLPLFISCPWCNLLSFRLVYKGNLKFP 120
           NVP+VLWCGHT+CK C+LGLQ A+V K   LP QLP F++CPWCN+LS RLV  G ++FP
Sbjct: 61  NVPYVLWCGHTICKYCLLGLQRAIVIKSSALPFQLPFFVACPWCNILSLRLVCNGTIRFP 120

Query: 121 CKNYFLLWMVENMNGERVKSRSDFSGDQLVFPVSGNSRSNQVGHSNLRRGHHVRQLDPQR 180
            KN++LLWMVE+MNG R ++ SD   ++ V     + R+   G SN   G     LD + 
Sbjct: 121 SKNFYLLWMVESMNGSRSEAPSD---NKRVASGQRDLRNRCDGVSNTALGDE-GLLDNRS 180

Query: 181 PNNANSHAHSFNLERLKSSLCKLLVFFVHLTAKFPLVIIFLLIILYAVPASAAILALYIL 240
             N  +    F   RL  S+ K +    HL AKFPLV+IFLL+ LYA+P SAA+L +Y  
Sbjct: 181 WWNGVTRGF-FRTGRLHDSVRKSMALVAHLLAKFPLVVIFLLMALYAIPVSAAVLGVYFF 240

Query: 241 VTVLFALPSFLILYFAYPSLDWLMREIIT 265
           VT   A+PSFL+LYFA+PSL+WL+REI T
Sbjct: 241 VTFALAVPSFLVLYFAFPSLNWLIREIAT 261

[Close]

BLAST of CmoCh01G004980 vs. TAIR10
Match: AT1G21651.1 (AT1G21651.1 zinc ion binding)

HSP 1 Score: 50.1 bits (118), Expect = 2.5e-06
Identity = 23/59 (38.98%), Postives = 31/59 (52.54%), Query Frame = 1


Query: 44  ECPICWESFNIVENVPHVLWCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLL 103
           ECP+C +S++    VP VL CGHT C+ C+            LP + P  I CP C +L
Sbjct: 5   ECPVCLQSYDGESTVPRVLACGHTACEECL----------TNLPKKFPDTIRCPACTVL 53

[Close]

BLAST of CmoCh01G004980 vs. TAIR10
Match: AT1G21650.3 (AT1G21650.3 Preprotein translocase SecA family protein)

HSP 1 Score: 50.1 bits (118), Expect = 2.5e-06
Identity = 23/59 (38.98%), Postives = 31/59 (52.54%), Query Frame = 1


Query: 44  ECPICWESFNIVENVPHVLWCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLL 103
           ECP+C +S++    VP VL CGHT C+ C+            LP + P  I CP C +L
Sbjct: 5   ECPVCLQSYDGESTVPRVLACGHTACEECL----------TNLPKKFPDTIRCPACTVL 53

[Close]

BLAST of CmoCh01G004980 vs. NCBI nr
Match: gi|449446247|ref|XP_004140883.1| (PREDICTED: uncharacterized protein LOC101203968 [Cucumis sativus])

HSP 1 Score: 483.0 bits (1242), Expect = 3.3e-133
Identity = 244/265 (92.08%), Postives = 253/265 (95.47%), Query Frame = 1


Query: 1   MWNFASNCVAGCTGLKSSSQKLTHTATECSDDEVSSDGREEVLECPICWESFNIVENVPH 60
           MWNFASNCVAGC GLKSSS+K +HTATECSDDE+SSDGREEVLECPICWESFNIVENVPH
Sbjct: 1   MWNFASNCVAGCAGLKSSSRKSSHTATECSDDELSSDGREEVLECPICWESFNIVENVPH 60

Query: 61  VLWCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLLSFRLVYKGNLKFPCKNYF 120
           VLWCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLLSFRLVYKGNLKFPCKNYF
Sbjct: 61  VLWCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLLSFRLVYKGNLKFPCKNYF 120

Query: 121 LLWMVENMNGERVKSRSDFSGDQLVFPVSG-NSRSNQVGHSNLRRGHHVRQLDPQRPNNA 180
           LLWMVEN+N ERVKS S FSGDQLVFPVSG +SR NQV H+NLRRGHHVRQLD Q PNNA
Sbjct: 121 LLWMVENINVERVKSHSAFSGDQLVFPVSGTSSRGNQVSHNNLRRGHHVRQLDSQGPNNA 180

Query: 181 NSHAHSFNLERLKSSLCKLLVFFVHLTAKFPLVIIFLLIILYAVPASAAILALYILVTVL 240
           NSH HSFNLERL+SSL KLLVFFVHLTAKFPLVIIFLLI+LYAVPASAAILALY+LVTVL
Sbjct: 181 NSHFHSFNLERLQSSLRKLLVFFVHLTAKFPLVIIFLLIVLYAVPASAAILALYVLVTVL 240

Query: 241 FALPSFLILYFAYPSLDWLMREIIT 265
           FALPSFLILYFAYPSLDWLMREIIT
Sbjct: 241 FALPSFLILYFAYPSLDWLMREIIT 265

[Close]

BLAST of CmoCh01G004980 vs. NCBI nr
Match: gi|659089886|ref|XP_008445733.1| (PREDICTED: uncharacterized protein LOC103488671 [Cucumis melo])

HSP 1 Score: 476.9 bits (1226), Expect = 2.3e-131
Identity = 240/265 (90.57%), Postives = 252/265 (95.09%), Query Frame = 1


Query: 1   MWNFASNCVAGCTGLKSSSQKLTHTATECSDDEVSSDGREEVLECPICWESFNIVENVPH 60
           MWNFASNCVAGC GLKSSS+K +HTATECSDDE+SSDGREEVLECPICWESFNIVENVPH
Sbjct: 1   MWNFASNCVAGCAGLKSSSRKTSHTATECSDDELSSDGREEVLECPICWESFNIVENVPH 60

Query: 61  VLWCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLLSFRLVYKGNLKFPCKNYF 120
           VLWCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLLSFRLVYKGNLKFPCKNYF
Sbjct: 61  VLWCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLLSFRLVYKGNLKFPCKNYF 120

Query: 121 LLWMVENMNGERVKSRSDFSGDQLVFPVSG-NSRSNQVGHSNLRRGHHVRQLDPQRPNNA 180
           LLWMVEN+N ERVKS S FSGD L+FPVSG +SR NQV H+NLRRGHHVRQLD Q PN+A
Sbjct: 121 LLWMVENINVERVKSHSAFSGDPLIFPVSGSSSRVNQVSHNNLRRGHHVRQLDSQGPNSA 180

Query: 181 NSHAHSFNLERLKSSLCKLLVFFVHLTAKFPLVIIFLLIILYAVPASAAILALYILVTVL 240
           NSH H+FNLERL+SSL KLLVFFVHLTAKFPLVIIFLLI+LYAVPASAAILALY+LVTVL
Sbjct: 181 NSHFHNFNLERLQSSLRKLLVFFVHLTAKFPLVIIFLLIVLYAVPASAAILALYVLVTVL 240

Query: 241 FALPSFLILYFAYPSLDWLMREIIT 265
           FALPSFLILYFAYPSLDWLMREIIT
Sbjct: 241 FALPSFLILYFAYPSLDWLMREIIT 265

[Close]

BLAST of CmoCh01G004980 vs. NCBI nr
Match: gi|595940309|ref|XP_007215820.1| (hypothetical protein PRUPE_ppa010047mg [Prunus persica])

HSP 1 Score: 380.2 bits (975), Expect = 3.0e-102
Identity = 198/267 (74.16%), Postives = 228/267 (85.39%), Query Frame = 1


Query: 1   MWNFASNCVAGCTGLKSSSQKLTHTATECSDDEVSSD-GREEVLECPICWESFNIVENVP 60
           MWNFAS+C+AG  GLK+ S + T  A+ECSDDE SS  GREE LECPICWESFNIVENVP
Sbjct: 1   MWNFASSCIAGSVGLKNDSLRPTQAASECSDDEGSSVVGREEGLECPICWESFNIVENVP 60

Query: 61  HVLWCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLLSFRLVYKGNLKFPCKNY 120
           +VLWCGHTLCKNCILGLQWAVVKFPTLP+QLPLFISCPWCNLLSFRLVY+GNLKFP KNY
Sbjct: 61  YVLWCGHTLCKNCILGLQWAVVKFPTLPIQLPLFISCPWCNLLSFRLVYRGNLKFPRKNY 120

Query: 121 FLLWMVENMNGERVKSRSDFSGD-QLVFPVSGN-SRSNQVGHSNLRRGHHVRQLDPQRPN 180
           FLLWMVE+MNG+R+KS S FSGD   V+P +GN S  +QV H++ RR HH+R ++P   N
Sbjct: 121 FLLWMVESMNGDRIKSHSTFSGDNHAVWPANGNASVGSQVSHTHHRRVHHIRHIEPSGQN 180

Query: 181 NANSHAHSFNLERLKSSLCKLLVFFVHLTAKFPLVIIFLLIILYAVPASAAILALYILVT 240
           + + + +  ++ERL SSL K L FFVHLTAKFPLV+IFLLIILY +PA AAILALYILVT
Sbjct: 181 HVHVNNY-LSVERLHSSLRKSLFFFVHLTAKFPLVVIFLLIILYVIPACAAILALYILVT 240

Query: 241 VLFALPSFLILYFAYPSLDWLMREIIT 265
           V+FALPSFL+LYFAYPSLDWL+REIIT
Sbjct: 241 VVFALPSFLLLYFAYPSLDWLVREIIT 266

[Close]

BLAST of CmoCh01G004980 vs. NCBI nr
Match: gi|645249645|ref|XP_008230837.1| (PREDICTED: uncharacterized protein LOC103330072 [Prunus mume])

HSP 1 Score: 378.6 bits (971), Expect = 8.7e-102
Identity = 199/267 (74.53%), Postives = 228/267 (85.39%), Query Frame = 1


Query: 1   MWNFASNCVAGCTGLKSSSQKLTHTATECSDDEVSSD-GREEVLECPICWESFNIVENVP 60
           MWNFAS+C+AG  GLK+ S + T  A+ECSDDE SS  GREE LECPICWESFNIVENVP
Sbjct: 1   MWNFASSCIAGSVGLKNDSLRPTQAASECSDDEGSSVVGREEGLECPICWESFNIVENVP 60

Query: 61  HVLWCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLLSFRLVYKGNLKFPCKNY 120
           +VLWCGHTLCKNCILGLQWAVVKFPTLP+QLPLFISCPWCNLLSFRLVY+GNLKFP KNY
Sbjct: 61  YVLWCGHTLCKNCILGLQWAVVKFPTLPIQLPLFISCPWCNLLSFRLVYRGNLKFPRKNY 120

Query: 121 FLLWMVENMNGERVKSRSDFSGD-QLVFPVSGN-SRSNQVGHSNLRRGHHVRQLDPQRPN 180
           FLLWMVE+MNG+RVKS S FSGD   V+P +GN S  +QV H++ RR HH+R ++P   N
Sbjct: 121 FLLWMVESMNGDRVKSHSTFSGDNHPVWPANGNASVGSQVSHTHHRRVHHIRHIEPLGQN 180

Query: 181 NANSHAHSFNLERLKSSLCKLLVFFVHLTAKFPLVIIFLLIILYAVPASAAILALYILVT 240
           +A  + +  ++ERL SSL K L FFVHLTAKFPLV+IFLLIILY +PA AAILALYIL+T
Sbjct: 181 HALVNNY-LSVERLHSSLRKSLFFFVHLTAKFPLVVIFLLIILYVIPACAAILALYILIT 240

Query: 241 VLFALPSFLILYFAYPSLDWLMREIIT 265
           V+FALPSFL+LYFAYPSLDWL+REIIT
Sbjct: 241 VVFALPSFLLLYFAYPSLDWLVREIIT 266

[Close]

BLAST of CmoCh01G004980 vs. NCBI nr
Match: gi|703073599|ref|XP_010089587.1| (hypothetical protein L484_020977 [Morus notabilis])

HSP 1 Score: 374.0 bits (959), Expect = 2.1e-100
Identity = 201/268 (75.00%), Postives = 225/268 (83.96%), Query Frame = 1


Query: 1   MWNFASNCVAGCTGLKSSSQKLTHTATECSDDEVSSD-GREEVLECPICWESFNIVENVP 60
           MWNFAS+C+AG  GLK   QK   TA+ECSDDEVSS  GREE LECPIC ESFN+VENVP
Sbjct: 1   MWNFASSCIAGSVGLKKDPQKPAQTASECSDDEVSSVVGREEGLECPICCESFNLVENVP 60

Query: 61  HVLWCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLLSFRLVYKGNLKFPCKNY 120
           +VLWCGHTLCKNCILGLQWAVVKFPTLP+QLPLFISCPWCNLLSFRLVY+GNLKFP KNY
Sbjct: 61  YVLWCGHTLCKNCILGLQWAVVKFPTLPIQLPLFISCPWCNLLSFRLVYRGNLKFPHKNY 120

Query: 121 FLLWMVENMNGERVKSRSDFSGD-QLVFPVSGN-SRSNQVGH-SNLRRGHHVRQLDPQRP 180
           FLLWMVE+MNG+RVK+ S  S D    + V+G+ S + Q+   SNLRRGHHVR  +P R 
Sbjct: 121 FLLWMVESMNGDRVKTHSSQSEDHHPSWSVNGSTSMACQISSGSNLRRGHHVRHSEPSRS 180

Query: 181 NNANSHAHSFNLERLKSSLCKLLVFFVHLTAKFPLVIIFLLIILYAVPASAAILALYILV 240
           N     ++  +LERL SSL K L+FF HLTAKFPLV+IFLLII+YA+PASAAILALYILV
Sbjct: 181 NERVHLSNYLSLERLNSSLKKSLLFFAHLTAKFPLVVIFLLIIIYAIPASAAILALYILV 240

Query: 241 TVLFALPSFLILYFAYPSLDWLMREIIT 265
           TVLFALPSFLILYFAYPSLDWL+REIIT
Sbjct: 241 TVLFALPSFLILYFAYPSLDWLVREIIT 268

The following BLAST results are available for this feature:

BLAST of CmoCh01G004980 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh01G004980 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K8G4_CUCSA	2.3e-133	92.08	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G042350 PE=4 SV=1	[more]
M5WTL5_PRUPE	2.1e-102	74.16	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010047mg PE=4 SV=1	[more]
W9R4L8_9ROSA	1.5e-100	75.00	Uncharacterized protein OS=Morus notabilis GN=L484_020977 PE=4 SV=1	[more]
C6TIH4_SOYBN	2.4e-98	73.13	Uncharacterized protein OS=Glycine max GN=GLYMA_13G059100 PE=2 SV=1	[more]
A0A0B2PHT9_GLYSO	2.4e-98	73.13	Uncharacterized protein OS=Glycine soja GN=glysoja_032019 PE=4 SV=1	[more]

BLAST of CmoCh01G004980 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G29270.1	1.0e-84	63.02	RING/U-box superfamily protein	[more]
AT1G69330.1	9.6e-67	52.40	RING/U-box superfamily protein	[more]
AT1G74370.1	1.3e-58	50.19	RING/U-box superfamily protein	[more]
AT1G21651.1	2.5e-06	38.98	zinc ion binding	[more]
AT1G21650.3	2.5e-06	38.98	Preprotein translocase SecA family protein	[more]

BLAST of CmoCh01G004980 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449446247\|ref\|XP_004140883.1\|	3.3e-133	92.08	PREDICTED: uncharacterized protein LOC101203968 [Cucumis sativus]	[more]
gi\|659089886\|ref\|XP_008445733.1\|	2.3e-131	90.57	PREDICTED: uncharacterized protein LOC103488671 [Cucumis melo]	[more]
gi\|595940309\|ref\|XP_007215820.1\|	3.0e-102	74.16	hypothetical protein PRUPE_ppa010047mg [Prunus persica]	[more]
gi\|645249645\|ref\|XP_008230837.1\|	8.7e-102	74.53	PREDICTED: uncharacterized protein LOC103330072 [Prunus mume]	[more]
gi\|703073599\|ref\|XP_010089587.1\|	2.1e-100	75.00	hypothetical protein L484_020977 [Morus notabilis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001841	Znf_RING
IPR013083	Znf_RING/FYVE/PHD
IPR017907	Znf_RING_CS
IPR027370	Znf-RING_LisH

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding
GO:0008270	zinc ion binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005622	intracellular
molecular_function	GO:0005515	protein binding
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh01G004980.1	CmoCh01G004980.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	PROFILE	PS50089	ZF_RING_2	coord: 45..100 score: 10
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	G3DSA:3.30.40.10		coord: 38..100 score: 4.1
IPR017907	Zinc finger, RING-type, conserved site	PROSITE	PS00518	ZF_RING_1	coord: 64..73 scor
IPR027370	RING-type zinc-finger, LisH dimerisation motif	PFAM	PF13445	zf-RING_UBOX	coord: 45..97 score: 5.
None	No IPR available	PANTHER	PTHR13139	RING FINGER AND CCCH-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN	coord: 18..264 score: 3.7E
None	No IPR available	PANTHER	PTHR13139:SF47	SUBFAMILY NOT NAMED	coord: 18..264 score: 3.7E
None	No IPR available	unknown	SSF57850	RING/U-box	coord: 40..102 score: 3.6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh01G004980	CmaCh01G004680	Cucurbita maxima (Rimu)	cmacmoB468
CmoCh01G004980	Cp4.1LG02g12350	Cucurbita pepo (Zucchini)	cmocpeB449
CmoCh01G004980	Carg20413	Silver-seed gourd	carcmoB0954

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh01G004980	Cucurbita maxima (Rimu)	cmacmoB258
CmoCh01G004980	Cucurbita maxima (Rimu)	cmacmoB413
CmoCh01G004980	Wild cucumber (PI 183967)	cmocpiB475
CmoCh01G004980	Cucumber (Chinese Long) v2	cmocuB471
CmoCh01G004980	Melon (DHL92) v3.5.1	cmomeB377
CmoCh01G004980	Watermelon (Charleston Gray)	cmowcgB420
CmoCh01G004980	Watermelon (97103) v1	cmowmB442
CmoCh01G004980	Bottle gourd (USVL1VR-Ls)	cmolsiB429
CmoCh01G004980	Cucumber (Gy14) v2	cgybcmoB610
CmoCh01G004980	Melon (DHL92) v3.6.1	cmomedB434
CmoCh01G004980	Cucumber (Chinese Long) v3	cmocucB0564
CmoCh01G004980	Watermelon (97103) v2	cmowmbB469
CmoCh01G004980	Wax gourd	cmowgoB0597
CmoCh01G004980	Cucurbita moschata (Rifu)	cmocmoB331
CmoCh01G004980	Cucurbita moschata (Rifu)	cmocmoB365
CmoCh01G004980	Cucumber (Gy14) v1	cgycmoB0792