CmoCh01G000300 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh01G000300
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Leucine-rich receptor-like kinase family protein, putative
Location	Cmo_Chr01 : 107793 .. 108102 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCTCTGATTCCACTCCCTGCTGTTGGGCTGGGATTCATTGTGATCAAAACCTTGAATCTCTCTTCCTATGGGGTTTCAGGTCACCTTGGACGCGAAATTGCTTTGACCACCAACGAATTCTCTGGTGCAATTTCTTCTGGGCTACGCAACTGTAGCCATTTAGAGTACTTGGATCTCTCCCTCAACCAATTAGGTGGAGAAATTCAATCGTTGATGTCCCTTAGGAACTTACACGTTTTTGAACTTCGATGCAAATGGTGTAACTGGCGCAGTTCCCGATTCGTTACTTCAAATATTAATAAAATGA

mRNA sequence

ATGCCTCTGATTCCACTCCCTGCTGTTGGGCTGGGATTCATTGTGATCAAAACCTTGAATCTCTCTTCCTATGGGGTTTCAGGTCACCTTGGACGCGAAATTGCTTTGACCACCAACGAATTCTCTGGTGCAATTTCTTCTGGGCTACGCAACTGTAGCCATTTAGAGTACTTGGATCTCTCCCTCAACCAATTAGTTCCCGATTCGTTACTTCAAATATTAATAAAATGA

Coding sequence (CDS)

ATGCCTCTGATTCCACTCCCTGCTGTTGGGCTGGGATTCATTGTGATCAAAACCTTGAATCTCTCTTCCTATGGGGTTTCAGGTCACCTTGGACGCGAAATTGCTTTGACCACCAACGAATTCTCTGGTGCAATTTCTTCTGGGCTACGCAACTGTAGCCATTTAGAGTACTTGGATCTCTCCCTCAACCAATTAGTTCCCGATTCGTTACTTCAAATATTAATAAAATGA

Homology

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BLAST of CmoCh01G000300 vs. Swiss-Prot
Match: PEPR2_ARATH (Leucine-rich repeat receptor-like protein kinase PEPR2 OS=Arabidopsis thaliana GN=PEPR2 PE=1 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 6.8e-07
Identity = 33/66 (50.00%), Postives = 40/66 (60.61%), Query Frame = 1


Query: 15  VIKTLNLSSYGVSGHLGREIA---------LTTNEFSGAISSGLRNCSHLEYLDLSLNQL 69
           V++TLNLS+ G+SG LG EI          L+ N FSG + S L NC+ LEYLDLS N  
Sbjct: 77  VVETLNLSASGLSGQLGSEIGELKSLVTLDLSLNSFSGLLPSTLGNCTSLEYLDLSNNDF 136

[Close]

BLAST of CmoCh01G000300 vs. Swiss-Prot
Match: RPK1_IPONI (Receptor-like protein kinase OS=Ipomoea nil GN=INRPK1 PE=2 SV=2)

HSP 1 Score: 53.5 bits (127), Expect = 1.2e-06
Identity = 32/67 (47.76%), Postives = 41/67 (61.19%), Query Frame = 1


Query: 16  IKTLNLSSYGVSGHLGREIA---------LTTNEFSGAISSGLRNCSHLEYLDLSLNQL- 71
           + TLNLSSYG+SG  G EI+         L+ N F G+I S L NCS LE++DLS N   
Sbjct: 70  VDTLNLSSYGISGEFGPEISHLKHLKKVVLSGNGFFGSIPSQLGNCSLLEHIDLSSNSFT 129

[Close]

BLAST of CmoCh01G000300 vs. TrEMBL
Match: A0A0A0LEL6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G651760 PE=3 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 1.3e-09
Identity = 39/67 (58.21%), Postives = 44/67 (65.67%), Query Frame = 1


Query: 16  IKTLNLSSYGVSGHLGREIA---------LTTNEFSGAISSGLRNCSHLEYLDLSLNQL- 71
           + T NLS YGVSGHLG EI+         LTTN+FSG I  G+ NCSHLEYLDLS NQ  
Sbjct: 69  VVTFNLSFYGVSGHLGPEISSLTQLRTIDLTTNDFSGEIPYGIGNCSHLEYLDLSFNQFS 128

[Close]

BLAST of CmoCh01G000300 vs. TrEMBL
Match: A0A0A0L973_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G651750 PE=3 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 1.3e-09
Identity = 39/67 (58.21%), Postives = 44/67 (65.67%), Query Frame = 1


Query: 16  IKTLNLSSYGVSGHLGREIA---------LTTNEFSGAISSGLRNCSHLEYLDLSLNQL- 71
           + T NLS YGVSGHLG EI+         LTTN+FSG I  G+ NCSHLEYLDLS NQ  
Sbjct: 70  VVTFNLSFYGVSGHLGPEISSLTQLRTIDLTTNDFSGEIPYGIGNCSHLEYLDLSFNQFS 129

[Close]

BLAST of CmoCh01G000300 vs. TAIR10
Match: AT1G17750.1 (AT1G17750.1 PEP1 receptor 2)

HSP 1 Score: 54.3 bits (129), Expect = 3.8e-08
Identity = 33/66 (50.00%), Postives = 40/66 (60.61%), Query Frame = 1


Query: 15  VIKTLNLSSYGVSGHLGREIA---------LTTNEFSGAISSGLRNCSHLEYLDLSLNQL 69
           V++TLNLS+ G+SG LG EI          L+ N FSG + S L NC+ LEYLDLS N  
Sbjct: 77  VVETLNLSASGLSGQLGSEIGELKSLVTLDLSLNSFSGLLPSTLGNCTSLEYLDLSNNDF 136

[Close]

BLAST of CmoCh01G000300 vs. TAIR10
Match: AT1G73066.1 (AT1G73066.1 Leucine-rich repeat family protein)

HSP 1 Score: 49.3 bits (116), Expect = 1.2e-06
Identity = 30/67 (44.78%), Postives = 38/67 (56.72%), Query Frame = 1


Query: 16  IKTLNLSSYGVSGHLGREIA---------LTTNEFSGAISSGLRNCSHLEYLDLSLNQL- 71
           + +LN +  GVSG LG EI          +++N FSG I S L NCS L Y+DLS N   
Sbjct: 75  VTSLNFTGSGVSGQLGPEIGQLKSLEILDMSSNNFSGIIPSSLGNCSSLVYIDLSENSFS 134

[Close]

BLAST of CmoCh01G000300 vs. NCBI nr
Match: gi|778688732|ref|XP_011652826.1| (PREDICTED: receptor-like protein kinase [Cucumis sativus])

HSP 1 Score: 70.1 bits (170), Expect = 1.9e-09
Identity = 39/67 (58.21%), Postives = 44/67 (65.67%), Query Frame = 1


Query: 16  IKTLNLSSYGVSGHLGREIA---------LTTNEFSGAISSGLRNCSHLEYLDLSLNQL- 71
           + T NLS YGVSGHLG EI+         LTTN+FSG I  G+ NCSHLEYLDLS NQ  
Sbjct: 69  VVTFNLSFYGVSGHLGPEISSLTQLRTIDLTTNDFSGEIPYGIGNCSHLEYLDLSFNQFS 128

[Close]

BLAST of CmoCh01G000300 vs. NCBI nr
Match: gi|700203358|gb|KGN58491.1| (hypothetical protein Csa_3G651760 [Cucumis sativus])

HSP 1 Score: 70.1 bits (170), Expect = 1.9e-09
Identity = 39/67 (58.21%), Postives = 44/67 (65.67%), Query Frame = 1


Query: 16  IKTLNLSSYGVSGHLGREIA---------LTTNEFSGAISSGLRNCSHLEYLDLSLNQL- 71
           + T NLS YGVSGHLG EI+         LTTN+FSG I  G+ NCSHLEYLDLS NQ  
Sbjct: 69  VVTFNLSFYGVSGHLGPEISSLTQLRTIDLTTNDFSGEIPYGIGNCSHLEYLDLSFNQFS 128

[Close]

BLAST of CmoCh01G000300 vs. NCBI nr
Match: gi|778682564|ref|XP_011651735.1| (PREDICTED: receptor-like protein kinase [Cucumis sativus])

HSP 1 Score: 70.1 bits (170), Expect = 1.9e-09
Identity = 39/67 (58.21%), Postives = 44/67 (65.67%), Query Frame = 1


Query: 16  IKTLNLSSYGVSGHLGREIA---------LTTNEFSGAISSGLRNCSHLEYLDLSLNQL- 71
           + T NLS YGVSGHLG EI+         LTTN+FSG I  G+ NCSHLEYLDLS NQ  
Sbjct: 70  VVTFNLSFYGVSGHLGPEISSLTQLRTIDLTTNDFSGEIPYGIGNCSHLEYLDLSFNQFS 129

[Close]

BLAST of CmoCh01G000300 vs. NCBI nr
Match: gi|659127981|ref|XP_008463988.1| (PREDICTED: receptor-like protein kinase [Cucumis melo])

HSP 1 Score: 64.3 bits (155), Expect = 1.0e-07
Identity = 36/65 (55.38%), Postives = 43/65 (66.15%), Query Frame = 1


Query: 18  TLNLSSYGVSGHLGREIA---------LTTNEFSGAISSGLRNCSHLEYLDLSLNQL--- 71
           T NLS YGVSG LG EIA         LTTN+FSG I  G+ NC+HLE+LDLS N+    
Sbjct: 71  TFNLSFYGVSGQLGPEIASLTQLRTIDLTTNDFSGEIPYGIGNCTHLEFLDLSFNRFGGE 130

[Close]

BLAST of CmoCh01G000300 vs. NCBI nr
Match: gi|659127979|ref|XP_008463987.1| (PREDICTED: receptor-like protein kinase [Cucumis melo])

HSP 1 Score: 63.5 bits (153), Expect = 1.8e-07
Identity = 38/65 (58.46%), Postives = 40/65 (61.54%), Query Frame = 1


Query: 18  TLNLSSYGVSGHLGREIA---------LTTNEFSGAISSGLRNCSHLEYLDLSLNQL--- 71
           T NLS Y VSG LG EIA         LTTN FSG I  G+ NCSHLEYLDLS NQ    
Sbjct: 71  TFNLSYYDVSGQLGPEIARLTHLRTIDLTTNGFSGEIPYGIGNCSHLEYLDLSFNQFGGE 130

The following BLAST results are available for this feature:

BLAST of CmoCh01G000300 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PEPR2_ARATH	6.8e-07	50.00	Leucine-rich repeat receptor-like protein kinase PEPR2 OS=Arabidopsis thaliana G...	[more]
RPK1_IPONI	1.2e-06	47.76	Receptor-like protein kinase OS=Ipomoea nil GN=INRPK1 PE=2 SV=2	[more]

BLAST of CmoCh01G000300 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LEL6_CUCSA	1.3e-09	58.21	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G651760 PE=3 SV=1	[more]
A0A0A0L973_CUCSA	1.3e-09	58.21	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G651750 PE=3 SV=1	[more]

BLAST of CmoCh01G000300 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G17750.1	3.8e-08	50.00	PEP1 receptor 2	[more]
AT1G73066.1	1.2e-06	44.78	Leucine-rich repeat family protein	[more]

BLAST of CmoCh01G000300 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778688732\|ref\|XP_011652826.1\|	1.9e-09	58.21	PREDICTED: receptor-like protein kinase [Cucumis sativus]	[more]
gi\|700203358\|gb\|KGN58491.1\|	1.9e-09	58.21	hypothetical protein Csa_3G651760 [Cucumis sativus]	[more]
gi\|778682564\|ref\|XP_011651735.1\|	1.9e-09	58.21	PREDICTED: receptor-like protein kinase [Cucumis sativus]	[more]
gi\|659127981\|ref\|XP_008463988.1\|	1.0e-07	55.38	PREDICTED: receptor-like protein kinase [Cucumis melo]	[more]
gi\|659127979\|ref\|XP_008463987.1\|	1.8e-07	58.46	PREDICTED: receptor-like protein kinase [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0016301	kinase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh01G000300.1	CmoCh01G000300.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	SSF52047	RNI-like	coord: 16..71 score: 8.6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh01G000300	CsaV3_UNG227870	Cucumber (Chinese Long) v3	cmocucB0509
CmoCh01G000300	Bhi01G002196	Wax gourd	cmowgoB0561

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh01G000300	Silver-seed gourd	carcmoB0166
CmoCh01G000300	Silver-seed gourd	carcmoB0285
CmoCh01G000300	Cucumber (Chinese Long) v3	cmocucB0525
CmoCh01G000300	Cucumber (Chinese Long) v3	cmocucB0576
CmoCh01G000300	Watermelon (97103) v2	cmowmbB478
CmoCh01G000300	Watermelon (97103) v2	cmowmbB500
CmoCh01G000300	Wax gourd	cmowgoB0605
CmoCh01G000300	Cucurbita moschata (Rifu)	cmocmoB104
CmoCh01G000300	Cucurbita moschata (Rifu)	cmocmoB202
CmoCh01G000300	Cucurbita moschata (Rifu)	cmocmoB299
CmoCh01G000300	Cucurbita moschata (Rifu)	cmocmoB379
CmoCh01G000300	Cucumber (Gy14) v1	cgycmoB0559
CmoCh01G000300	Cucumber (Gy14) v1	cgycmoB0987
CmoCh01G000300	Cucurbita maxima (Rimu)	cmacmoB256
CmoCh01G000300	Cucurbita maxima (Rimu)	cmacmoB355
CmoCh01G000300	Cucurbita maxima (Rimu)	cmacmoB468
CmoCh01G000300	Cucurbita maxima (Rimu)	cmacmoB906
CmoCh01G000300	Wild cucumber (PI 183967)	cmocpiB438
CmoCh01G000300	Wild cucumber (PI 183967)	cmocpiB486
CmoCh01G000300	Cucumber (Chinese Long) v2	cmocuB434
CmoCh01G000300	Cucumber (Chinese Long) v2	cmocuB480
CmoCh01G000300	Melon (DHL92) v3.5.1	cmomeB388
CmoCh01G000300	Melon (DHL92) v3.5.1	cmomeB419
CmoCh01G000300	Watermelon (Charleston Gray)	cmowcgB381
CmoCh01G000300	Watermelon (Charleston Gray)	cmowcgB427
CmoCh01G000300	Watermelon (97103) v1	cmowmB407
CmoCh01G000300	Watermelon (97103) v1	cmowmB423
CmoCh01G000300	Cucurbita pepo (Zucchini)	cmocpeB426
CmoCh01G000300	Cucurbita pepo (Zucchini)	cmocpeB449
CmoCh01G000300	Cucurbita pepo (Zucchini)	cmocpeB452
CmoCh01G000300	Bottle gourd (USVL1VR-Ls)	cmolsiB398
CmoCh01G000300	Bottle gourd (USVL1VR-Ls)	cmolsiB437
CmoCh01G000300	Cucumber (Gy14) v2	cgybcmoB333
CmoCh01G000300	Cucumber (Gy14) v2	cgybcmoB916
CmoCh01G000300	Melon (DHL92) v3.6.1	cmomedB445
CmoCh01G000300	Melon (DHL92) v3.6.1	cmomedB479