CmoCh01G000160 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh01G000160
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	40S ribosomal protein SA
Location	Cmo_Chr01 : 53379 .. 56003 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTGCAACTCTTTGTTCCGGCCGAAAGAAAGAAACCTAGAGAAGCCCTAGCCCCTCCTGTTCTGTTCACAGGCCCCTTCTTTGTTGGTTCAACCTCCTTAAATTACTGCTATTCTGCAAACCCTAATACAACTCTCGATTCACAGAGATCCCGCCATGGCCACTGGAACAGCACCGCGTCAGCTCTCGCAGAAGGAGGCCGACATCCAGATGATGTTGGCCGCCGAGGTTCATCTAGGCACGAAGAACTGTAACTTCCAAATGGAGCGTTACGTTTTCAAGCGTCGAAACGATGGTATGTTGTGAATCACTTTACTTTTAGTTTTTCCAAGTTTGTTGAACTCCCCAAACCGCTTCCTAGATCCTCTTTGTTTTCAATATTGACTGTGATTTGTCTTGCACTGTAACATTGAGCACTAATGTCCCTGCCCAATGACCCTAAGTTTTGGAATGAAATTCTAAGGACTAGAGCGATCATAATTTCATGAGTCCGTATATATATCCGTGATCTCTTTGTTAAATTTGTGATAGTGATTACAATTCAGAGACGGTGTCTGACTATTGTTTGGTTTACCTCTTTAGTTATGACTGTATTTGCCAAGGACACATTGTTGAATAGTCCTATGGATTCTACATGTTTGGTGTGCGACAGCACGTGTGATGTCATTTTTAATTTGATCCCACAATGTTGGTTCATACGGTCAAAGATTTGAAGATTAATCCAATCTCTATTGTTTGAAGAATCAATTTTGTATTCGAGTCTGTTACTTTGAGGAATGTTAAGTTATTAAAGGCTTAAAAAGAGGTTTGATCTCTATATTTTCCATATGACGAACCTTTTTTTTTCTAATTCTCCTTTTTAGGAATCTACATTATTAACCTTGGTAAGACATGGGAGAAACTTCAGATGGCTGCCAGAGTTATTGTGGGTATTGAGAATCCACAGGACATCATTGTTCAGTCTGCAAGGCCTTATGGTCAGAGGGCCGTCTTGAAGTTTGCTCAACACACTGGGGCTCATGCAATAGCCGGGAGGCATACCCCTGGAACCTTCACTAACCAGCTTCAGACCTCTTTCAATGAACCACGTCTTCTGATACTTACTGATCCTAGAACTGATCATCAGGTGATTGAGCCTTTTTAAAGACCGATAAAAGTTTTCTGTTATTAGTTTTAAGTCAAAAGGATCGTCTTCTTTTTACCAATGCTAGATTCACTTTTGTTCCCTTCATTTTATTTATACCTGACTTGTTGCTGCTATTTGTGTTGTCTGGTTGGTTTCTCGTTTCCAGCCCATTAAGGAAGGTGCGCTTGGAAACATTCCTACAATTGCCTTTTGCGATACTGATTCACCAATGCGGTATGTTGATATTGGGATTCCAGCAAATAACAAGGGGAAACATAGCATTGGATGTCTTTTCTGGCTTTTGGCAAGGATGGTTCTGCAGATGCGTGGAACAATTCGTGCAGGGCATAAATGGGACGTGATGGTAAGATCAACATTATATTTTATATCGTAGCATTGTAAACCGTGTTCTGAACTGGAAGTTTGGGTTAACACTTTAGTGTTGGAAGTTTAATTGAAGGTTTGGATTGAATCAATGGATGTGTTTCTTCTGCAGGTGGATTTGTTTTTCTACCGAGAGCCTGAGGAGGCCAAGGAGAAAGAGGAAGAGGCTGTTGCGCCTCCAGATTATGGCATTGCCGATTATGGGGCTGCTCCACTTGTTGCCTCAGATCAATGGGCAGGACAAATTTCTGATGCTCAGTGGGGTGACCCTGATGTGGTTCCACCACCTGTAGCTGCTGCAGTTGTGCCACCTGTTCCGAGTGTTGAGTGGGCCCAAGAGCCAGGTTGAGCCCGAGTTTCCTTTTATGATTTAGTTGAATACCCGTGCTCATTGCCGTGTGTTTAGCTTTTAAAAGAAATCACGCTGGTTTATGTTTATAATTACCACCTGCCAGTTCCAGTTACCTTGTAGTCTGTCATTCGATAACTTGGTTGGTTGTCTGTTTGAGTCGTAGCAAAAAACAACGTTGTTTTTCCATGAACATACTTATTTTTTGACGCCTTCTTTTCTGGGTTTTTTTTTTCCTTGTGCAGTTGCTTTAGCATCAGACGGATGGGATGTTGCAGTACCGCCACCAGCACCTTCAGCCGAAGGTGCTGCGCCTCCGGCTGCCAGTTGGTAGGGTACACTAAGGGAACTATCGAGAATTCATTAATCGTTTTATGAGTTTGCTTGTTTATGTAGGGGTACCACCTTTTTTGGTTGCAAAATTGGCTTGCCTCTTTTCTGATAGTCCAGTTTTAGATTTTGATATTGAAATTTTGACATCAACTTTGGTATCTTGGTACAATTTTTTTGGGATATATGGAATTTACTCGTCTCAAGTTTAGTGGACATCCATATGAATAATGACTCTAAATAATGGGTGGTGGTAGATCCTCCATTGAACACAGTCATAGTGATACTCCTGTCCAATTGATAATATGTCAATTTAATTGACTACTCTTTGTTTCCTGTTGAAATTTTGTTTGATAAACTATGTAAAATTATAATATTTTGAGTTGGGAACTGAGAGTCGAGAAGTTCTAAGGGGTCTAGAGTGTAGAAGAAATAAAT

mRNA sequence

TTGCAACTCTTTGTTCCGGCCGAAAGAAAGAAACCTAGAGAAGCCCTAGCCCCTCCTGTTCTGTTCACAGGCCCCTTCTTTGTTGGTTCAACCTCCTTAAATTACTGCTATTCTGCAAACCCTAATACAACTCTCGATTCACAGAGATCCCGCCATGGCCACTGGAACAGCACCGCGTCAGCTCTCGCAGAAGGAGGCCGACATCCAGATGATGTTGGCCGCCGAGGTTCATCTAGGCACGAAGAACTGTAACTTCCAAATGGAGCGTTACGTTTTCAAGCGTCGAAACGATGGAATCTACATTATTAACCTTGGTAAGACATGGGAGAAACTTCAGATGGCTGCCAGAGTTATTGTGGGTATTGAGAATCCACAGGACATCATTGTTCAGTCTGCAAGGCCTTATGGTCAGAGGGCCGTCTTGAAGTTTGCTCAACACACTGGGGCTCATGCAATAGCCGGGAGGCATACCCCTGGAACCTTCACTAACCAGCTTCAGACCTCTTTCAATGAACCACGTCTTCTGATACTTACTGATCCTAGAACTGATCATCAGCCCATTAAGGAAGGTGCGCTTGGAAACATTCCTACAATTGCCTTTTGCGATACTGATTCACCAATGCGGTATGTTGATATTGGGATTCCAGCAAATAACAAGGGGAAACATAGCATTGGATGTCTTTTCTGGCTTTTGGCAAGGATGGTTCTGCAGATGCGTGGAACAATTCGTGCAGGGCATAAATGGGACGTGATGGTGGATTTGTTTTTCTACCGAGAGCCTGAGGAGGCCAAGGAGAAAGAGGAAGAGGCTGTTGCGCCTCCAGATTATGGCATTGCCGATTATGGGGCTGCTCCACTTGTTGCCTCAGATCAATGGGCAGGACAAATTTCTGATGCTCAGTGGGGTGACCCTGATGTGGTTCCACCACCTGTAGCTGCTGCAGTTGTGCCACCTGTTCCGAGTGTTGAGTGGGCCCAAGAGCCAGTTGCTTTAGCATCAGACGGATGGGATGTTGCAGTACCGCCACCAGCACCTTCAGCCGAAGGTGCTGCGCCTCCGGCTGCCAGTTGGTAGGGTACACTAAGGGAACTATCGAGAATTCATTAATCGTTTTATGAGTTTGCTTGTTTATGTAGGGGTACCACCTTTTTTGGTTGCAAAATTGGCTTGCCTCTTTTCTGATAGTCCAGTTTTAGATTTTGATATTGAAATTTTGACATCAACTTTGGTATCTTGGTACAATTTTTTTGGGATATATGGAATTTACTCGTCTCAAGTTTAGTGGACATCCATATGAATAATGACTCTAAATAATGGGTGGTGGTAGATCCTCCATTGAACACAGTCATAGTGATACTCCTGTCCAATTGATAATATGTCAATTTAATTGACTACTCTTTGTTTCCTGTTGAAATTTTGTTTGATAAACTATGTAAAATTATAATATTTTGAGTTGGGAACTGAGAGTCGAGAAGTTCTAAGGGGTCTAGAGTGTAGAAGAAATAAAT

Coding sequence (CDS)

ATGGCCACTGGAACAGCACCGCGTCAGCTCTCGCAGAAGGAGGCCGACATCCAGATGATGTTGGCCGCCGAGGTTCATCTAGGCACGAAGAACTGTAACTTCCAAATGGAGCGTTACGTTTTCAAGCGTCGAAACGATGGAATCTACATTATTAACCTTGGTAAGACATGGGAGAAACTTCAGATGGCTGCCAGAGTTATTGTGGGTATTGAGAATCCACAGGACATCATTGTTCAGTCTGCAAGGCCTTATGGTCAGAGGGCCGTCTTGAAGTTTGCTCAACACACTGGGGCTCATGCAATAGCCGGGAGGCATACCCCTGGAACCTTCACTAACCAGCTTCAGACCTCTTTCAATGAACCACGTCTTCTGATACTTACTGATCCTAGAACTGATCATCAGCCCATTAAGGAAGGTGCGCTTGGAAACATTCCTACAATTGCCTTTTGCGATACTGATTCACCAATGCGGTATGTTGATATTGGGATTCCAGCAAATAACAAGGGGAAACATAGCATTGGATGTCTTTTCTGGCTTTTGGCAAGGATGGTTCTGCAGATGCGTGGAACAATTCGTGCAGGGCATAAATGGGACGTGATGGTGGATTTGTTTTTCTACCGAGAGCCTGAGGAGGCCAAGGAGAAAGAGGAAGAGGCTGTTGCGCCTCCAGATTATGGCATTGCCGATTATGGGGCTGCTCCACTTGTTGCCTCAGATCAATGGGCAGGACAAATTTCTGATGCTCAGTGGGGTGACCCTGATGTGGTTCCACCACCTGTAGCTGCTGCAGTTGTGCCACCTGTTCCGAGTGTTGAGTGGGCCCAAGAGCCAGTTGCTTTAGCATCAGACGGATGGGATGTTGCAGTACCGCCACCAGCACCTTCAGCCGAAGGTGCTGCGCCTCCGGCTGCCAGTTGGTAG

Homology

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BLAST of CmoCh01G000160 vs. Swiss-Prot
Match: RSSA_SOYBN (40S ribosomal protein SA OS=Glycine max PE=2 SV=1)

HSP 1 Score: 459.1 bits (1180), Expect = 3.7e-128
Identity = 232/294 (78.91%), Postives = 244/294 (82.99%), Query Frame = 1


Query: 2   ATGTAPRQLSQKEADIQMMLAAEVHLGTKNCNFQMERYVFKRRNDGIYIINLGKTWEKLQ 61
           A    PRQLSQKEADIQMMLAA+VHLGTKNC+FQMERY+FKRRNDGIYIINLGKTWEKLQ
Sbjct: 7   AAAAPPRQLSQKEADIQMMLAADVHLGTKNCDFQMERYIFKRRNDGIYIINLGKTWEKLQ 66

Query: 62  MAARVIVGIENPQDIIVQSARPYGQRAVLKFAQHTGAHAIAGRHTPGTFTNQLQTSFNEP 121
           +AARVIV IENPQDIIVQSARPYGQRAVLKFAQ+TGAHAIAGRHTPGTFTNQLQTSF+EP
Sbjct: 67  LAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEP 126

Query: 122 RLLILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLA 181
           RLLILTDPRTDHQPIKE ALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLA
Sbjct: 127 RLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLA 186

Query: 182 RMVLQMRGTIRAGHKWDVMVDLFFYREPEEAKEKEEEAVAPPDYGIADYGAAPLVASDQW 241
           RMVLQMRGTIR G KWDVMVDLFFYREPEEAK++EEE     DY I D+ A  + A  QW
Sbjct: 187 RMVLQMRGTIRPGLKWDVMVDLFFYREPEEAKQQEEEEAPAVDYAITDFNAGAIAADGQW 246

Query: 242 AGQISDAQWGDPDVVPPPVAAAVVPPVPSVEW---AQEPVALASDGWDVAVPPP 293
            G I D  W   D VP P     +P VP V W   A+ P A   D W  AVPPP
Sbjct: 247 PGTI-DQSWS--DAVPQP-----IPAVPGVNWGAPAEAPAAAGGD-WGEAVPPP 291

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BLAST of CmoCh01G000160 vs. Swiss-Prot
Match: RSSA_CICAR (40S ribosomal protein SA OS=Cicer arietinum GN=RAP40 PE=2 SV=1)

HSP 1 Score: 456.8 bits (1174), Expect = 1.8e-127
Identity = 237/309 (76.70%), Postives = 256/309 (82.85%), Query Frame = 1


Query: 1   MATGTAP-RQLSQKEADIQMMLAAEVHLGTKNCNFQMERYVFKRRNDGIYIINLGKTWEK 60
           MAT TAP RQL+QKEADIQMMLAA+VHLGTKNCNFQMERY+FKRRNDGIYIINLGKTW+K
Sbjct: 1   MATTTAPSRQLTQKEADIQMMLAADVHLGTKNCNFQMERYIFKRRNDGIYIINLGKTWDK 60

Query: 61  LQMAARVIVGIENPQDIIVQSARPYGQRAVLKFAQHTGAHAIAGRHTPGTFTNQLQTSFN 120
           L +AAR+IV IEN QDIIVQSARPYGQRAVLKFAQ+TGAHAIAGRHTPGTFTNQLQTSF+
Sbjct: 61  LNLAARIIVAIENSQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFS 120

Query: 121 EPRLLILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWL 180
           EPRLLILTDPRTDHQPIKE ALGNIPTIAFCDTDSPM YVDIGIPANNKGKHSIGCLFWL
Sbjct: 121 EPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMNYVDIGIPANNKGKHSIGCLFWL 180

Query: 181 LARMVLQMRGTIRAGHKWDVMVDLFFYREPEEAKEKEEEAVAPPDYGIADYGAAPLVASD 240
           LARMVLQMRGTIR G KWDVMVDLFFYREPEEAK+ EE+ VA PDY IAD+  + + +  
Sbjct: 181 LARMVLQMRGTIRPGLKWDVMVDLFFYREPEEAKQPEEDEVAAPDYAIADFNVSAIPSDG 240

Query: 241 QWAGQISDAQWGDPDVVPPPVAAAVVPPVPSVEWAQEPVALASDGWDVAVPPP--APSAE 300
           QW   I D  W   D VP P     +P VP+V WA  P A+A D W  AVPPP   P+A 
Sbjct: 241 QWPAAI-DQPWN--DAVPQP-----IPAVPAVNWA-APEAVAGD-WGEAVPPPQQIPTAG 299

Query: 301 GAAPPAASW 307
             + PA  W
Sbjct: 301 IESVPATGW 299

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BLAST of CmoCh01G000160 vs. Swiss-Prot
Match: RSSA_VITVI (40S ribosomal protein SA OS=Vitis vinifera GN=GSVIVT00034021001 PE=3 SV=1)

HSP 1 Score: 454.9 bits (1169), Expect = 6.9e-127
Identity = 242/316 (76.58%), Postives = 253/316 (80.06%), Query Frame = 1


Query: 1   MATGTAPRQLSQKEADIQMMLAAEVHLGTKNCNFQMERYVFKRRNDGIYIINLGKTWEKL 60
           MAT T  R LSQKE DIQMMLAAEVHLGTKNCNFQMERYVFKRRNDGIYIINLGKTWEKL
Sbjct: 1   MATPT--RALSQKEQDIQMMLAAEVHLGTKNCNFQMERYVFKRRNDGIYIINLGKTWEKL 60

Query: 61  QMAARVIVGIENPQDIIVQSARPYGQRAVLKFAQHTGAHAIAGRHTPGTFTNQLQTSFNE 120
           Q+AARVIV IENP+DIIVQSARPYGQRAVLKFAQ+TGAHAIAGRHTPGTFTNQLQTSF+E
Sbjct: 61  QLAARVIVAIENPKDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSE 120

Query: 121 PRLLILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLL 180
           PRLLILTDPRTDHQPIKE ALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLL
Sbjct: 121 PRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLL 180

Query: 181 ARMVLQMRGTIRAGHKWDVMVDLFFYREPEEAKEKE-EEAVAPPDYGIADYGAAPL--VA 240
           ARMVLQMR TI  GHKWDVMVDLFFYREPEE KE+E +E VA PDYGI DY A  L  + 
Sbjct: 181 ARMVLQMRRTIAPGHKWDVMVDLFFYREPEEPKEQEGDEVVAAPDYGITDYQATALGGLG 240

Query: 241 SDQWAGQISDA-QWGDPDVVPPPVAAAVVPPVPSVEWAQ-----EPVALASDGWDVAVPP 300
              W   I+DA QWG    VP   A A +P VP   W         V +A+DGWD A  P
Sbjct: 241 GGDWGAPITDAPQWGAD--VP---AVAPIPAVPGSNWGDAAPMPSAVPIATDGWDAAAAP 300

Query: 301 PA----PSAEGAAPPA 304
           P     P  EG  PPA
Sbjct: 301 PVAVPPPVVEGVPPPA 309

[Close]

BLAST of CmoCh01G000160 vs. Swiss-Prot
Match: RSSA_DAUCA (40S ribosomal protein SA OS=Daucus carota GN=179B PE=2 SV=1)

HSP 1 Score: 451.4 bits (1160), Expect = 7.6e-126
Identity = 234/303 (77.23%), Postives = 251/303 (82.84%), Query Frame = 1


Query: 1   MATGTAPRQLSQKEADIQMMLAAEVHLGTKNCNFQMERYVFKRRNDGIYIINLGKTWEKL 60
           MA+G   R+LS  EADIQMM AAEVHLGTKNC+FQMERYVFKRRNDGIYIINLGKTWEKL
Sbjct: 1   MASGA--RELSTMEADIQMMCAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKL 60

Query: 61  QMAARVIVGIENPQDIIVQSARPYGQRAVLKFAQHTGAHAIAGRHTPGTFTNQLQTSFNE 120
            +AARVIV IENPQDIIVQSARPYGQRAVLKFAQ+TGAHAIAGRHTPGTFTNQLQTSF+E
Sbjct: 61  MLAARVIVSIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSE 120

Query: 121 PRLLILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLL 180
           PRLLILTDPRTDHQPIKE ALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLL
Sbjct: 121 PRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLL 180

Query: 181 ARMVLQMRGTIRAGHKWDVMVDLFFYREPEEAKEKEEEAVAPPDYGIADYGAAPLVASDQ 240
           ARMVLQMRG I  GHKW+VMVDLFFYREPEE K++EEE +   DY +ADY AAP+  +DQ
Sbjct: 181 ARMVLQMRGVISQGHKWEVMVDLFFYREPEETKDQEEEDLPVGDY-VADYAAAPIGGADQ 240

Query: 241 WAGQISDAQWGDPDVVPPPVAAAVVPPVPSVEWAQEPVALASDGWDVAVPPPAPSAEGAA 300
           W   I DAQWG  DVV P  +A     VP+  W  +   +A DGWD A  PP P A G  
Sbjct: 241 W-NAIPDAQWGG-DVVQPANSA-----VPAGTWT-DAGPIAGDGWDAAAAPPVPGAVGLD 292

Query: 301 PPA 304
            PA
Sbjct: 301 VPA 292

[Close]

BLAST of CmoCh01G000160 vs. Swiss-Prot
Match: RSSA1_ARATH (40S ribosomal protein Sa-1 OS=Arabidopsis thaliana GN=RPSaA PE=1 SV=3)

HSP 1 Score: 432.2 bits (1110), Expect = 4.8e-120
Identity = 222/304 (73.03%), Postives = 241/304 (79.28%), Query Frame = 1


Query: 9   QLSQKEADIQMMLAAEVHLGTKNCNFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIV 68
           QLSQKEAD++MM AAEVHLGTKNCN+QMERYVFKRRNDGIYI NLGKTWEKLQMAARVIV
Sbjct: 11  QLSQKEADVRMMCAAEVHLGTKNCNYQMERYVFKRRNDGIYIFNLGKTWEKLQMAARVIV 70

Query: 69  GIENPQDIIVQSARPYGQRAVLKFAQHTGAHAIAGRHTPGTFTNQLQTSFNEPRLLILTD 128
            IENPQDIIVQSARPYGQRAVLKFAQ+TGA+AIAGRHTPGTFTNQ+QTSF+EPRLLILTD
Sbjct: 71  AIENPQDIIVQSARPYGQRAVLKFAQYTGANAIAGRHTPGTFTNQMQTSFSEPRLLILTD 130

Query: 129 PRTDHQPIKEGALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMR 188
           PRTDHQPIKEGALGNIP IAFCDTDSPMR+VDIGIPANNKGKHSIGCLFWLLARMVLQMR
Sbjct: 131 PRTDHQPIKEGALGNIPIIAFCDTDSPMRFVDIGIPANNKGKHSIGCLFWLLARMVLQMR 190

Query: 189 GTIRAGHKWDVMVDLFFYREPEEAKEKEEEAVAPPDYGIADYGAAP-----LVASDQW-A 248
           GTI AG KWDVMVDLFFYREPEE K ++E+   P     A+YGA P     +V  DQW  
Sbjct: 191 GTIAAGQKWDVMVDLFFYREPEETKPEDEDEAGPQ----AEYGALPAPEYGMVGGDQWTT 250

Query: 249 GQISDAQWGDPDVVPPPVAAAVVPPVPSVEWAQEPVALASDGWDVAVPPPAPSAEGAAPP 307
            QI DA W  P     P++AA      +  W+    A A  GW+ A PP       +  P
Sbjct: 251 AQIPDAAW--PGEGQAPISAAPA----AASWSDSAAAPADGGWEAAAPP-------SGAP 297

[Close]

BLAST of CmoCh01G000160 vs. TrEMBL
Match: A0A0A0L946_CUCSA (40S ribosomal protein SA OS=Cucumis sativus GN=Csa_3G646520 PE=3 SV=1)

HSP 1 Score: 570.9 bits (1470), Expect = 9.6e-160
Identity = 286/309 (92.56%), Postives = 293/309 (94.82%), Query Frame = 1


Query: 1   MATGTAPRQLSQKEADIQMMLAAEVHLGTKNCNFQMERYVFKRRNDGIYIINLGKTWEKL 60
           MAT TAPRQLSQKEADIQMMLAAEVHLGTKNC+FQMERYVFKRRNDGIYIINLGKTWEKL
Sbjct: 1   MATATAPRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKL 60

Query: 61  QMAARVIVGIENPQDIIVQSARPYGQRAVLKFAQHTGAHAIAGRHTPGTFTNQLQTSFNE 120
           Q+AARVIVGIENPQDIIVQSARPYGQRAVLKFAQHTGAHAIAGRHTPGTFTNQLQTSFNE
Sbjct: 61  QLAARVIVGIENPQDIIVQSARPYGQRAVLKFAQHTGAHAIAGRHTPGTFTNQLQTSFNE 120

Query: 121 PRLLILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLL 180
           PRLLILTDPRTDHQPIKE ALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLL
Sbjct: 121 PRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLL 180

Query: 181 ARMVLQMRGTIRAGHKWDVMVDLFFYREPEEAKEK-EEEAVAPPDYGIADYGAAPLVASD 240
           ARMVLQMRGTIRAGH+WDVMVDLFFYREPEEAKEK EEEAVAPPDYGIADYG APLVASD
Sbjct: 181 ARMVLQMRGTIRAGHQWDVMVDLFFYREPEEAKEKEEEEAVAPPDYGIADYGGAPLVASD 240

Query: 241 QWAGQISDAQWGDPDVVPPPVAA-AVVPPVPSVEWAQEP-VALASDGWDVAVPPPAPSAE 300
           QWAGQISDAQWG PD++P P AA  VVPPV +VEW QEP VA+ASDGWD A PPPAPSAE
Sbjct: 241 QWAGQISDAQWGAPDLIPAPDAAPVVVPPVSNVEWTQEPVVAIASDGWDAAAPPPAPSAE 300

Query: 301 GAAPPAASW 307
           G A PAASW
Sbjct: 301 GGA-PAASW 308

[Close]

BLAST of CmoCh01G000160 vs. TrEMBL
Match: A0A0A0K8X1_CUCSA (40S ribosomal protein SA OS=Cucumis sativus GN=Csa_6G016990 PE=3 SV=1)

HSP 1 Score: 528.5 bits (1360), Expect = 5.5e-147
Identity = 269/311 (86.50%), Postives = 275/311 (88.42%), Query Frame = 1


Query: 1   MATGTAP-RQLSQKEADIQMMLAAEVHLGTKNCNFQMERYVFKRRNDGIYIINLGKTWEK 60
           MATG AP RQLSQKEADIQMMLAAEVHLGTKNC+FQMERYVFKRRNDGIYIINLGKTWEK
Sbjct: 1   MATGAAPPRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEK 60

Query: 61  LQMAARVIVGIENPQDIIVQSARPYGQRAVLKFAQHTGAHAIAGRHTPGTFTNQLQTSFN 120
           LQ+AARVIVGIENPQDIIVQSARPYGQRAVLKFAQHTGAHAIAGRHTPGTFTNQLQTSFN
Sbjct: 61  LQLAARVIVGIENPQDIIVQSARPYGQRAVLKFAQHTGAHAIAGRHTPGTFTNQLQTSFN 120

Query: 121 EPRLLILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWL 180
           EPRLLILTDPRTDHQPIKE ALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWL
Sbjct: 121 EPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWL 180

Query: 181 LARMVLQMRGTIRAGHKWDVMVDLFFYREPEEAKEKEEEAVAPP-DYGIADYGAAPLVAS 240
           LARMVLQMRGTIRAGHKWDVMVDLFFYREPEEAKE EEE   PP D+GIADY AAPL  S
Sbjct: 181 LARMVLQMRGTIRAGHKWDVMVDLFFYREPEEAKEPEEEEALPPADFGIADYSAAPLT-S 240

Query: 241 DQWAGQISDAQWGDPDVVPPPVAAAVVPPVPSVEWAQEPVALASDGWDVAV---PPPAPS 300
           DQW  QI DAQWG  D +P P   A V P    EWA EPVALA+DGWD A    PPPA S
Sbjct: 241 DQWTSQIPDAQWGAADAIPSP---APVVPASGAEWAPEPVALAADGWDAAAAPPPPPAVS 300

Query: 301 AEGAAPPAASW 307
           AEG AP +ASW
Sbjct: 301 AEGTAPSSASW 307

[Close]

BLAST of CmoCh01G000160 vs. TrEMBL
Match: A0A0A0KUD9_CUCSA (40S ribosomal protein SA OS=Cucumis sativus GN=Csa_4G038770 PE=3 SV=1)

HSP 1 Score: 515.8 bits (1327), Expect = 3.7e-143
Identity = 262/307 (85.34%), Postives = 275/307 (89.58%), Query Frame = 1


Query: 1   MATGTAPRQLSQKEADIQMMLAAEVHLGTKNCNFQMERYVFKRRNDGIYIINLGKTWEKL 60
           MATGT   QLSQKEADIQMMLAAEVHLGTKNC+FQMERYVFKRRNDGIYIINLGKTWEKL
Sbjct: 1   MATGTEQCQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKL 60

Query: 61  QMAARVIVGIENPQDIIVQSARPYGQRAVLKFAQHTGAHAIAGRHTPGTFTNQLQTSFNE 120
           QMAARVIV IENPQDIIVQSARPYGQRAVLKFAQ+TGAHAIAGRHTPGTFTNQLQTSFNE
Sbjct: 61  QMAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFNE 120

Query: 121 PRLLILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLL 180
           PRLLILTDPRTDHQPIKE ALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLL
Sbjct: 121 PRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLL 180

Query: 181 ARMVLQMRGTIRAGHKWDVMVDLFFYREPEEAKEK-EEEAVAPPDYGIADYGAAPLVASD 240
           ARMVLQMRGT+R G+KWDVMVDLFFYREPEE KEK EEEAVAPPDYGIAD+G+AP VA D
Sbjct: 181 ARMVLQMRGTVRPGYKWDVMVDLFFYREPEEVKEKEEEEAVAPPDYGIADFGSAP-VAVD 240

Query: 241 QWAGQISDAQWGDPDVVPPPVAAAVVPPVPSVEWAQEPVALASDGWDVAVPPPAPSAEGA 300
           QW   + DAQWG P+V P   AA+    V + EWAQE V  A+DGW VA+PPPAPS E A
Sbjct: 241 QW---VPDAQWGAPNVAPTAAAAS----VSNAEWAQESVR-AADGWGVAIPPPAPSLEAA 298

Query: 301 APPAASW 307
           APPA+ W
Sbjct: 301 APPASDW 298

[Close]

BLAST of CmoCh01G000160 vs. TrEMBL
Match: M5W4J8_PRUPE (40S ribosomal protein SA OS=Prunus persica GN=PRUPE_ppa009383mg PE=3 SV=1)

HSP 1 Score: 476.5 bits (1225), Expect = 2.5e-131
Identity = 245/307 (79.80%), Postives = 257/307 (83.71%), Query Frame = 1


Query: 1   MATGTAPRQLSQKEADIQMMLAAEVHLGTKNCNFQMERYVFKRRNDGIYIINLGKTWEKL 60
           MA  + PR LSQKEADIQMMLAAEVHLGTKNC+FQMERYVFKRRNDGIYIINLGKTW+KL
Sbjct: 1   MANASPPRLLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWDKL 60

Query: 61  QMAARVIVGIENPQDIIVQSARPYGQRAVLKFAQHTGAHAIAGRHTPGTFTNQLQTSFNE 120
           Q+AARVIV IENP+DIIVQSARPYGQRAVLKFAQHTGA+AIAGRHTPGTFTNQLQTSFNE
Sbjct: 61  QLAARVIVAIENPKDIIVQSARPYGQRAVLKFAQHTGANAIAGRHTPGTFTNQLQTSFNE 120

Query: 121 PRLLILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLL 180
           PRLLILTDPRTDHQPIKE ALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFW+L
Sbjct: 121 PRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWIL 180

Query: 181 ARMVLQMRGTIRAGHKWDVMVDLFFYREPEEAKEK-EEEAVAPPDYGIADYGAAPLVASD 240
           ARMVLQMRG++R GHKWDVMVDLFFYREPEEAKEK EEEA    DYGI DY A    A D
Sbjct: 181 ARMVLQMRGSLRPGHKWDVMVDLFFYREPEEAKEKEEEEAATAADYGITDYSA----AGD 240

Query: 241 QWAGQISDAQWGDPDVVPPPVAAAVVPPVPSVEWAQEPVALASDGWDVAVPPPAPSAEGA 300
           QW  Q+SDA W       P  A A +P  P V W  EPVA A+DGW   VP PAP  EG 
Sbjct: 241 QWPAQVSDAPW-------PTDAPAAIPAAPVVSWTAEPVA-AADGWGEPVPGPAP-VEG- 293

Query: 301 APPAASW 307
           AP A  W
Sbjct: 301 APTATGW 293

[Close]

BLAST of CmoCh01G000160 vs. TrEMBL
Match: A0A059ASL7_EUCGR (40S ribosomal protein SA OS=Eucalyptus grandis GN=EUGRSUZ_I02137 PE=3 SV=1)

HSP 1 Score: 465.3 bits (1196), Expect = 5.7e-128
Identity = 240/310 (77.42%), Postives = 257/310 (82.90%), Query Frame = 1


Query: 1   MATGT----AP-RQLSQKEADIQMMLAAEVHLGTKNCNFQMERYVFKRRNDGIYIINLGK 60
           MATG+    AP RQLSQKEADIQMMLAAEVHLGTKNC+FQMERYVFKRRNDGIYIINLGK
Sbjct: 1   MATGSTTAAAPARQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGK 60

Query: 61  TWEKLQMAARVIVGIENPQDIIVQSARPYGQRAVLKFAQHTGAHAIAGRHTPGTFTNQLQ 120
           TWEKLQ+AARVIV IENPQDIIVQSARPYGQRAVLKFAQ+T  HAIAGRHTPGTFTNQLQ
Sbjct: 61  TWEKLQLAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTNTHAIAGRHTPGTFTNQLQ 120

Query: 121 TSFNEPRLLILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGC 180
           TSF+EPRLLILTDPRTDHQPIKE ALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGC
Sbjct: 121 TSFSEPRLLILTDPRTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGC 180

Query: 181 LFWLLARMVLQMRGTIRAGHKWDVMVDLFFYREPEEAK-EKEEEAVAPPDYGIADYGAAP 240
           LFWLLARMVLQMRGTI  GHKWDVMVDLFFYREPEEAK ++EEEA+   DYGI DY A  
Sbjct: 181 LFWLLARMVLQMRGTITPGHKWDVMVDLFFYREPEEAKQQEEEEAIVAGDYGITDYAAGQ 240

Query: 241 LVASDQWAGQISDAQWGDPDVVPPPVAAAVVPPVPSVEWAQEPVALASDGWDV-AVPPPA 300
            +  DQW  QI D+QW      PP      VP +    W +    +A+DGW++ A P PA
Sbjct: 241 AI-PDQWTSQIPDSQWASEAAAPP------VPAIQPTGWTETAAPVAADGWEIAAAPAPA 300

Query: 301 PSAEGAAPPA 304
           P+   AAPPA
Sbjct: 301 PA---AAPPA 300

[Close]

BLAST of CmoCh01G000160 vs. TAIR10
Match: AT1G72370.1 (AT1G72370.1 40s ribosomal protein SA)

HSP 1 Score: 432.2 bits (1110), Expect = 2.7e-121
Identity = 222/304 (73.03%), Postives = 241/304 (79.28%), Query Frame = 1


Query: 9   QLSQKEADIQMMLAAEVHLGTKNCNFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIV 68
           QLSQKEAD++MM AAEVHLGTKNCN+QMERYVFKRRNDGIYI NLGKTWEKLQMAARVIV
Sbjct: 11  QLSQKEADVRMMCAAEVHLGTKNCNYQMERYVFKRRNDGIYIFNLGKTWEKLQMAARVIV 70

Query: 69  GIENPQDIIVQSARPYGQRAVLKFAQHTGAHAIAGRHTPGTFTNQLQTSFNEPRLLILTD 128
            IENPQDIIVQSARPYGQRAVLKFAQ+TGA+AIAGRHTPGTFTNQ+QTSF+EPRLLILTD
Sbjct: 71  AIENPQDIIVQSARPYGQRAVLKFAQYTGANAIAGRHTPGTFTNQMQTSFSEPRLLILTD 130

Query: 129 PRTDHQPIKEGALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMR 188
           PRTDHQPIKEGALGNIP IAFCDTDSPMR+VDIGIPANNKGKHSIGCLFWLLARMVLQMR
Sbjct: 131 PRTDHQPIKEGALGNIPIIAFCDTDSPMRFVDIGIPANNKGKHSIGCLFWLLARMVLQMR 190

Query: 189 GTIRAGHKWDVMVDLFFYREPEEAKEKEEEAVAPPDYGIADYGAAP-----LVASDQW-A 248
           GTI AG KWDVMVDLFFYREPEE K ++E+   P     A+YGA P     +V  DQW  
Sbjct: 191 GTIAAGQKWDVMVDLFFYREPEETKPEDEDEAGPQ----AEYGALPAPEYGMVGGDQWTT 250

Query: 249 GQISDAQWGDPDVVPPPVAAAVVPPVPSVEWAQEPVALASDGWDVAVPPPAPSAEGAAPP 307
            QI DA W  P     P++AA      +  W+    A A  GW+ A PP       +  P
Sbjct: 251 AQIPDAAW--PGEGQAPISAAPA----AASWSDSAAAPADGGWEAAAPP-------SGAP 297

[Close]

BLAST of CmoCh01G000160 vs. TAIR10
Match: AT3G04770.1 (AT3G04770.1 40s ribosomal protein SA B)

HSP 1 Score: 373.2 bits (957), Expect = 1.5e-103
Identity = 177/198 (89.39%), Postives = 191/198 (96.46%), Query Frame = 1


Query: 5   TAPRQLSQKEADIQMMLAAEVHLGTKNCNFQMERYVFKRRNDGIYIINLGKTWEKLQMAA 64
           TA RQ+S+KEADIQMML+A+VHLGTKNCN+QMERYVFKRR+DGIYIINLGKTW+KLQMAA
Sbjct: 8   TAGRQVSEKEADIQMMLSADVHLGTKNCNYQMERYVFKRRDDGIYIINLGKTWDKLQMAA 67

Query: 65  RVIVGIENPQDIIVQSARPYGQRAVLKFAQHTGAHAIAGRHTPGTFTNQLQTSFNEPRLL 124
           RVIV IENP+DIIVQSARPYGQRAVLKFAQ+TG +AIAGRHTPGTFTNQ+QTSF+EPRLL
Sbjct: 68  RVIVAIENPKDIIVQSARPYGQRAVLKFAQYTGVNAIAGRHTPGTFTNQMQTSFSEPRLL 127

Query: 125 ILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMV 184
           ILTDPRTDHQPIKEGALGNIPTIAFCDTDSPM +VDIGIPANNKGKHSIGCLFWLLARMV
Sbjct: 128 ILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMGFVDIGIPANNKGKHSIGCLFWLLARMV 187

Query: 185 LQMRGTIRAGHKWDVMVD 203
           LQMRGTI A  KWDVMV+
Sbjct: 188 LQMRGTILAAQKWDVMVN 205

[Close]

BLAST of CmoCh01G000160 vs. NCBI nr
Match: gi|659120752|ref|XP_008460336.1| (PREDICTED: 40S ribosomal protein SA-like isoform X2 [Cucumis melo])

HSP 1 Score: 580.5 bits (1495), Expect = 1.7e-162
Identity = 287/307 (93.49%), Postives = 294/307 (95.77%), Query Frame = 1


Query: 1   MATGTAPRQLSQKEADIQMMLAAEVHLGTKNCNFQMERYVFKRRNDGIYIINLGKTWEKL 60
           MAT TAPRQLSQKEADIQMMLAAEVHLGTKNC+FQMERYVFKRRNDGIYIINLGKTWEKL
Sbjct: 73  MATTTAPRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKL 132

Query: 61  QMAARVIVGIENPQDIIVQSARPYGQRAVLKFAQHTGAHAIAGRHTPGTFTNQLQTSFNE 120
           Q+AARVIVGIENPQDIIVQSARPYGQRAVLKFAQHTGAHAIAGRHTPGTFTNQLQTSFNE
Sbjct: 133 QLAARVIVGIENPQDIIVQSARPYGQRAVLKFAQHTGAHAIAGRHTPGTFTNQLQTSFNE 192

Query: 121 PRLLILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLL 180
           PRLLILTDPRTDHQPIKE ALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLL
Sbjct: 193 PRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLL 252

Query: 181 ARMVLQMRGTIRAGHKWDVMVDLFFYREPEEAKEK-EEEAVAPPDYGIADYGAAPLVASD 240
           ARMVLQMRGTIRAGH+WDVMVDLFFYREPEEAKEK EEEAVAPPDYGIADYG APLVASD
Sbjct: 253 ARMVLQMRGTIRAGHQWDVMVDLFFYREPEEAKEKEEEEAVAPPDYGIADYGGAPLVASD 312

Query: 241 QWAGQISDAQWGDPDVVPPPVAAAVVPPVPSVEWAQEPVALASDGWDVAVPPPAPSAEGA 300
           QWAGQISDAQWG PD++P P AA VVPPV +VEW QEPVALASDGWD AVPPPAP+AEG 
Sbjct: 313 QWAGQISDAQWGAPDLIPAPDAAVVVPPVSNVEWTQEPVALASDGWDAAVPPPAPAAEGG 372

Query: 301 APPAASW 307
           A PAASW
Sbjct: 373 A-PAASW 378

[Close]

BLAST of CmoCh01G000160 vs. NCBI nr
Match: gi|659120750|ref|XP_008460335.1| (PREDICTED: 40S ribosomal protein SA-like isoform X1 [Cucumis melo])

HSP 1 Score: 575.9 bits (1483), Expect = 4.3e-161
Identity = 287/308 (93.18%), Postives = 294/308 (95.45%), Query Frame = 1


Query: 1   MATGTAPRQLSQKEADIQMMLAAEVHLGTKNCNFQMERYVFKRRNDGIYIINLGKTWEKL 60
           MAT TAPRQLSQKEADIQMMLAAEVHLGTKNC+FQMERYVFKRRNDGIYIINLGKTWEKL
Sbjct: 73  MATTTAPRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKL 132

Query: 61  QMAARVIVGIENPQDIIVQSARPYGQRAVLKFAQHTGAHAIAGRHTPGTFTNQLQTSFNE 120
           Q+AARVIVGIENPQDIIVQSARPYGQRAVLKFAQHTGAHAIAGRHTPGTFTNQLQTSFNE
Sbjct: 133 QLAARVIVGIENPQDIIVQSARPYGQRAVLKFAQHTGAHAIAGRHTPGTFTNQLQTSFNE 192

Query: 121 PRLLILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLL 180
           PRLLILTDPRTDHQPIKE ALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLL
Sbjct: 193 PRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLL 252

Query: 181 ARMVLQMRGTIRAGHKWDVMVDLFFYREPEEAKEK-EEEAVAPPDYGIADYGAAPLVASD 240
           ARMVLQMRGTIRAGH+WDVMVDLFFYREPEEAKEK EEEAVAPPDYGIADYG APLVASD
Sbjct: 253 ARMVLQMRGTIRAGHQWDVMVDLFFYREPEEAKEKEEEEAVAPPDYGIADYGGAPLVASD 312

Query: 241 QWAGQISDAQWGDPDVVPPPVAAAVVPPVPSVEWAQEP-VALASDGWDVAVPPPAPSAEG 300
           QWAGQISDAQWG PD++P P AA VVPPV +VEW QEP VALASDGWD AVPPPAP+AEG
Sbjct: 313 QWAGQISDAQWGAPDLIPAPDAAVVVPPVSNVEWTQEPAVALASDGWDAAVPPPAPAAEG 372

Query: 301 AAPPAASW 307
            A PAASW
Sbjct: 373 GA-PAASW 379

[Close]

BLAST of CmoCh01G000160 vs. NCBI nr
Match: gi|449453391|ref|XP_004144441.1| (PREDICTED: 40S ribosomal protein SA [Cucumis sativus])

HSP 1 Score: 570.9 bits (1470), Expect = 1.4e-159
Identity = 286/309 (92.56%), Postives = 293/309 (94.82%), Query Frame = 1


Query: 1   MATGTAPRQLSQKEADIQMMLAAEVHLGTKNCNFQMERYVFKRRNDGIYIINLGKTWEKL 60
           MAT TAPRQLSQKEADIQMMLAAEVHLGTKNC+FQMERYVFKRRNDGIYIINLGKTWEKL
Sbjct: 1   MATATAPRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKL 60

Query: 61  QMAARVIVGIENPQDIIVQSARPYGQRAVLKFAQHTGAHAIAGRHTPGTFTNQLQTSFNE 120
           Q+AARVIVGIENPQDIIVQSARPYGQRAVLKFAQHTGAHAIAGRHTPGTFTNQLQTSFNE
Sbjct: 61  QLAARVIVGIENPQDIIVQSARPYGQRAVLKFAQHTGAHAIAGRHTPGTFTNQLQTSFNE 120

Query: 121 PRLLILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLL 180
           PRLLILTDPRTDHQPIKE ALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLL
Sbjct: 121 PRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLL 180

Query: 181 ARMVLQMRGTIRAGHKWDVMVDLFFYREPEEAKEK-EEEAVAPPDYGIADYGAAPLVASD 240
           ARMVLQMRGTIRAGH+WDVMVDLFFYREPEEAKEK EEEAVAPPDYGIADYG APLVASD
Sbjct: 181 ARMVLQMRGTIRAGHQWDVMVDLFFYREPEEAKEKEEEEAVAPPDYGIADYGGAPLVASD 240

Query: 241 QWAGQISDAQWGDPDVVPPPVAA-AVVPPVPSVEWAQEP-VALASDGWDVAVPPPAPSAE 300
           QWAGQISDAQWG PD++P P AA  VVPPV +VEW QEP VA+ASDGWD A PPPAPSAE
Sbjct: 241 QWAGQISDAQWGAPDLIPAPDAAPVVVPPVSNVEWTQEPVVAIASDGWDAAAPPPAPSAE 300

Query: 301 GAAPPAASW 307
           G A PAASW
Sbjct: 301 GGA-PAASW 308

[Close]

BLAST of CmoCh01G000160 vs. NCBI nr
Match: gi|659126207|ref|XP_008463065.1| (PREDICTED: 40S ribosomal protein SA-like [Cucumis melo])

HSP 1 Score: 531.9 bits (1369), Expect = 7.1e-148
Identity = 269/310 (86.77%), Postives = 278/310 (89.68%), Query Frame = 1


Query: 1   MATGTAP-RQLSQKEADIQMMLAAEVHLGTKNCNFQMERYVFKRRNDGIYIINLGKTWEK 60
           MATG AP RQLSQKEADIQMMLAAEVHLGTKNC+FQMERYVFKRRNDGIYIINLGKTWEK
Sbjct: 1   MATGAAPPRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEK 60

Query: 61  LQMAARVIVGIENPQDIIVQSARPYGQRAVLKFAQHTGAHAIAGRHTPGTFTNQLQTSFN 120
           LQ+AARVIVGIENPQDIIVQSARPYGQRAVLKFAQHTGAHAIAGRHTPGTFTNQLQTSFN
Sbjct: 61  LQLAARVIVGIENPQDIIVQSARPYGQRAVLKFAQHTGAHAIAGRHTPGTFTNQLQTSFN 120

Query: 121 EPRLLILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWL 180
           EPRLLILTDPRTDHQPIKE ALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWL
Sbjct: 121 EPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWL 180

Query: 181 LARMVLQMRGTIRAGHKWDVMVDLFFYREPEEAKE-KEEEAVAPPDYGIADYGAAPLVAS 240
           LARMVLQMRGTIRAGHKWDVMVDLFFYREPEEAKE +EEEA+ P D+GIADY AAPL AS
Sbjct: 181 LARMVLQMRGTIRAGHKWDVMVDLFFYREPEEAKEPEEEEALPPADFGIADYSAAPL-AS 240

Query: 241 DQWAGQISDAQWGDPDVVPPPVAAAVVPPVPSVEWAQEPVALASDGWDVAVPPPAP--SA 300
           DQW  QI DAQWG  D +PPP   A V P    EWA EPVAL +DGWD A PPP P  SA
Sbjct: 241 DQWTSQIPDAQWGAADALPPP---AAVVPASGAEWAPEPVALTADGWDAAAPPPPPAASA 300

Query: 301 EGAAPPAASW 307
           +G AP +ASW
Sbjct: 301 DGTAPASASW 306

[Close]

BLAST of CmoCh01G000160 vs. NCBI nr
Match: gi|449441203|ref|XP_004138372.1| (PREDICTED: 40S ribosomal protein SA-like [Cucumis sativus])

HSP 1 Score: 528.5 bits (1360), Expect = 7.9e-147
Identity = 269/311 (86.50%), Postives = 275/311 (88.42%), Query Frame = 1


Query: 1   MATGTAP-RQLSQKEADIQMMLAAEVHLGTKNCNFQMERYVFKRRNDGIYIINLGKTWEK 60
           MATG AP RQLSQKEADIQMMLAAEVHLGTKNC+FQMERYVFKRRNDGIYIINLGKTWEK
Sbjct: 1   MATGAAPPRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEK 60

Query: 61  LQMAARVIVGIENPQDIIVQSARPYGQRAVLKFAQHTGAHAIAGRHTPGTFTNQLQTSFN 120
           LQ+AARVIVGIENPQDIIVQSARPYGQRAVLKFAQHTGAHAIAGRHTPGTFTNQLQTSFN
Sbjct: 61  LQLAARVIVGIENPQDIIVQSARPYGQRAVLKFAQHTGAHAIAGRHTPGTFTNQLQTSFN 120

Query: 121 EPRLLILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWL 180
           EPRLLILTDPRTDHQPIKE ALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWL
Sbjct: 121 EPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWL 180

Query: 181 LARMVLQMRGTIRAGHKWDVMVDLFFYREPEEAKEKEEEAVAPP-DYGIADYGAAPLVAS 240
           LARMVLQMRGTIRAGHKWDVMVDLFFYREPEEAKE EEE   PP D+GIADY AAPL  S
Sbjct: 181 LARMVLQMRGTIRAGHKWDVMVDLFFYREPEEAKEPEEEEALPPADFGIADYSAAPLT-S 240

Query: 241 DQWAGQISDAQWGDPDVVPPPVAAAVVPPVPSVEWAQEPVALASDGWDVAV---PPPAPS 300
           DQW  QI DAQWG  D +P P   A V P    EWA EPVALA+DGWD A    PPPA S
Sbjct: 241 DQWTSQIPDAQWGAADAIPSP---APVVPASGAEWAPEPVALAADGWDAAAAPPPPPAVS 300

Query: 301 AEGAAPPAASW 307
           AEG AP +ASW
Sbjct: 301 AEGTAPSSASW 307

The following BLAST results are available for this feature:

BLAST of CmoCh01G000160 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RSSA_SOYBN	3.7e-128	78.91	40S ribosomal protein SA OS=Glycine max PE=2 SV=1	[more]
RSSA_CICAR	1.8e-127	76.70	40S ribosomal protein SA OS=Cicer arietinum GN=RAP40 PE=2 SV=1	[more]
RSSA_VITVI	6.9e-127	76.58	40S ribosomal protein SA OS=Vitis vinifera GN=GSVIVT00034021001 PE=3 SV=1	[more]
RSSA_DAUCA	7.6e-126	77.23	40S ribosomal protein SA OS=Daucus carota GN=179B PE=2 SV=1	[more]
RSSA1_ARATH	4.8e-120	73.03	40S ribosomal protein Sa-1 OS=Arabidopsis thaliana GN=RPSaA PE=1 SV=3	[more]

BLAST of CmoCh01G000160 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L946_CUCSA	9.6e-160	92.56	40S ribosomal protein SA OS=Cucumis sativus GN=Csa_3G646520 PE=3 SV=1	[more]
A0A0A0K8X1_CUCSA	5.5e-147	86.50	40S ribosomal protein SA OS=Cucumis sativus GN=Csa_6G016990 PE=3 SV=1	[more]
A0A0A0KUD9_CUCSA	3.7e-143	85.34	40S ribosomal protein SA OS=Cucumis sativus GN=Csa_4G038770 PE=3 SV=1	[more]
M5W4J8_PRUPE	2.5e-131	79.80	40S ribosomal protein SA OS=Prunus persica GN=PRUPE_ppa009383mg PE=3 SV=1	[more]
A0A059ASL7_EUCGR	5.7e-128	77.42	40S ribosomal protein SA OS=Eucalyptus grandis GN=EUGRSUZ_I02137 PE=3 SV=1	[more]

BLAST of CmoCh01G000160 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G72370.1	2.7e-121	73.03	40s ribosomal protein SA	[more]
AT3G04770.1	1.5e-103	89.39	40s ribosomal protein SA B	[more]

BLAST of CmoCh01G000160 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659120752\|ref\|XP_008460336.1\|	1.7e-162	93.49	PREDICTED: 40S ribosomal protein SA-like isoform X2 [Cucumis melo]	[more]
gi\|659120750\|ref\|XP_008460335.1\|	4.3e-161	93.18	PREDICTED: 40S ribosomal protein SA-like isoform X1 [Cucumis melo]	[more]
gi\|449453391\|ref\|XP_004144441.1\|	1.4e-159	92.56	PREDICTED: 40S ribosomal protein SA [Cucumis sativus]	[more]
gi\|659126207\|ref\|XP_008463065.1\|	7.1e-148	86.77	PREDICTED: 40S ribosomal protein SA-like [Cucumis melo]	[more]
gi\|449441203\|ref\|XP_004138372.1\|	7.9e-147	86.50	PREDICTED: 40S ribosomal protein SA-like [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001865	Ribosomal_S2
IPR005707	Ribosomal_S2_euk/arc
IPR018130	Ribosomal_S2_CS
IPR023591	Ribosomal_S2_flav_dom_sf
IPR027498	Ribosomal_S2_euk

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular
GO:0005840	ribosome
GO:0015935	small ribosomal subunit

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000028	ribosomal small subunit assembly
biological_process	GO:0006412	translation
biological_process	GO:0042254	ribosome biogenesis
cellular_component	GO:0022627	cytosolic small ribosomal subunit
cellular_component	GO:0005622	intracellular
cellular_component	GO:0005840	ribosome
cellular_component	GO:0015935	small ribosomal subunit
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh01G000160.1	CmoCh01G000160.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001865	Ribosomal protein S2	PRINTS	PR00395	RIBOSOMALS2	coord: 159..173 score: 1.7E-31coord: 47..56 score: 1.7E-31coord: 138..149 score: 1.7E-31coord: 96..113 score: 1.7E-31coord: 121..138 score: 1.7E-31coord: 17..35 score: 1.7
IPR001865	Ribosomal protein S2	PFAM	PF00318	Ribosomal_S2	coord: 20..114 score: 2.4E-14coord: 119..184 score: 1.3
IPR005707	Ribosomal protein S2, eukaryotic/archaeal	PANTHER	PTHR11489	40S RIBOSOMAL PROTEIN SA	coord: 5..300 score: 3.8E
IPR005707	Ribosomal protein S2, eukaryotic/archaeal	TIGRFAMs	TIGR01012	TIGR01012	coord: 12..208 score: 5.7
IPR018130	Ribosomal protein S2, conserved site	PROSITE	PS00962	RIBOSOMAL_S2_1	coord: 17..28 scor
IPR018130	Ribosomal protein S2, conserved site	PROSITE	PS00963	RIBOSOMAL_S2_2	coord: 121..145 scor
IPR023591	Ribosomal protein S2, flavodoxin-like domain	unknown	SSF52313	Ribosomal protein S2	coord: 12..202 score: 2.62
IPR027498	Ribosomal protein S2, eukaryotic	HAMAP	MF_03015	Ribosomal_S2_euk	coord: 4..276 score: 50
None	No IPR available	GENE3D	G3DSA:3.40.50.10490		coord: 32..217 score: 2.2
None	No IPR available	PANTHER	PTHR11489:SF9	40S RIBOSOMAL PROTEIN SA	coord: 5..300 score: 3.8E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh01G000160	Cucsa.149330	Cucumber (Gy14) v1	cgycmoB0412
CmoCh01G000160	CmaCh14G012070	Cucurbita maxima (Rimu)	cmacmoB256
CmoCh01G000160	CmaCh01G000140	Cucurbita maxima (Rimu)	cmacmoB468
CmoCh01G000160	Cla012546	Watermelon (97103) v1	cmowmB423
CmoCh01G000160	Csa3G646520	Cucumber (Chinese Long) v2	cmocuB434
CmoCh01G000160	ClCG07G014360	Watermelon (Charleston Gray)	cmowcgB427
CmoCh01G000160	CSPI03G28510	Wild cucumber (PI 183967)	cmocpiB438
CmoCh01G000160	Lsi07G006510	Bottle gourd (USVL1VR-Ls)	cmolsiB437
CmoCh01G000160	Cp4.1LG02g17590	Cucurbita pepo (Zucchini)	cmocpeB449
CmoCh01G000160	Cp4.1LG03g14940	Cucurbita pepo (Zucchini)	cmocpeB452
CmoCh01G000160	MELO3C022691.2	Melon (DHL92) v3.6.1	cmomedB468
CmoCh01G000160	CsaV3_3G030910	Cucumber (Chinese Long) v3	cmocucB0525
CmoCh01G000160	Cla97C07G141240	Watermelon (97103) v2	cmowmbB478
CmoCh01G000160	Bhi01G002224	Wax gourd	cmowgoB0561
CmoCh01G000160	CsGy3G026490	Cucumber (Gy14) v2	cgybcmoB333
CmoCh01G000160	Carg04348	Silver-seed gourd	carcmoB0285
CmoCh01G000160	Carg06385	Silver-seed gourd	carcmoB0166

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh01G000160	CmoCh14G012360	Cucurbita moschata (Rifu)	cmocmoB202

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh01G000160	Cucumber (Chinese Long) v3	cmocucB0576
CmoCh01G000160	Watermelon (97103) v2	cmowmbB496
CmoCh01G000160	Watermelon (97103) v2	cmowmbB500
CmoCh01G000160	Wax gourd	cmowgoB0605
CmoCh01G000160	Wax gourd	cmowgoB0628
CmoCh01G000160	Cucurbita moschata (Rifu)	cmocmoB104
CmoCh01G000160	Cucurbita moschata (Rifu)	cmocmoB299
CmoCh01G000160	Cucurbita moschata (Rifu)	cmocmoB379
CmoCh01G000160	Cucumber (Gy14) v1	cgycmoB0987
CmoCh01G000160	Cucurbita maxima (Rimu)	cmacmoB355
CmoCh01G000160	Cucurbita maxima (Rimu)	cmacmoB906
CmoCh01G000160	Wild cucumber (PI 183967)	cmocpiB486
CmoCh01G000160	Cucumber (Chinese Long) v2	cmocuB480
CmoCh01G000160	Melon (DHL92) v3.5.1	cmomeB388
CmoCh01G000160	Melon (DHL92) v3.5.1	cmomeB410
CmoCh01G000160	Watermelon (Charleston Gray)	cmowcgB381
CmoCh01G000160	Watermelon (97103) v1	cmowmB407
CmoCh01G000160	Cucurbita pepo (Zucchini)	cmocpeB426
CmoCh01G000160	Bottle gourd (USVL1VR-Ls)	cmolsiB398
CmoCh01G000160	Cucumber (Gy14) v2	cgybcmoB916
CmoCh01G000160	Melon (DHL92) v3.6.1	cmomedB445
CmoCh01G000160	Silver-seed gourd	carcmoB1038