CmoCh01G000150 (gene) Cucurbita moschata (Rifu)

NameCmoCh01G000150
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionDormancy/auxin associated family protein
LocationCmo_Chr01 : 51481 .. 52456 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TATAGAAGCCAAAGGGAAGGAACGCCACTAACCACTCATTCCAATCAATCATTTAACCGGAAGACTTTTGTTACTCCCATCTTCTTCATCTTCATTATAAACCAATGGCCTCTGAGCTCCTTCTTCCACTTCTCACAGAGGGACATATAATTCATAATTAATTCAATATGAGTTTCCTCCACAAGCTTTGGGACGAAACCCTCGCTGGTCCCGCGCCGGATTCCGGCCTCAGTCGCCTCCGCAAGTACAACTCCTTCTCCGCCTCCCGATCTCCGCCTATGCTAACCAACGACCGCGCCTCCAACATTCCTCGTCGTATCGAGATCCCTAGCCCTACTCTCTCTCAGAACTCATCCACCACCACCACTCCACCGCCCACTCGTAAGTACTTCATTTCTTCTGTTTAAATCCCGTCTCTTGATTTTGATCGGGTCGTTATTGGTGTTGAATCATGCAGCGCCGGAGACGCCGCGAGGGGACGATATGAATAGACTGGCCAGGAGAAGAACCATTGATTATCCTCGCCGTCGCCCTTTGGAAGGATCTGACCCAACCAGCACCCCTTCTGTTTATGATTGGTTAGTTTTTTTCCACCACTTTTCATAAATAAACTTAGTAATTATTTTGTTTGACAAATTATTATTTATTCCCTAAATTTTGCTCTCAAAAACCCTTTTGACTTTTAAAAGTAATAATACACTTCAACTTTCAAATAAAAAAAATCAAAATACTATTTCTATTGGAGCATACAAGTTTAGGGTTCAAAATTTAATTTGAAGCGAAATAAATGGGTTAATTAAGAGAATTATACAAAATTAATTGCTAAGAATTATACAATATTTGGTTATCCTCCCATCCATTGAAGTAGTATAGATATTATGTAGATGTAATATTATGATATTTAGTGATAATTTTACGGTGAGATAATTGTGTTTTATAATTATATAGGATCGTTATAACTGCTTTAGATCGTTGA

mRNA sequence

TATAGAAGCCAAAGGGAAGGAACGCCACTAACCACTCATTCCAATCAATCATTTAACCGGAAGACTTTTGTTACTCCCATCTTCTTCATCTTCATTATAAACCAATGGCCTCTGAGCTCCTTCTTCCACTTCTCACAGAGGGACATATAATTCATAATTAATTCAATATGAGTTTCCTCCACAAGCTTTGGGACGAAACCCTCGCTGGTCCCGCGCCGGATTCCGGCCTCAGTCGCCTCCGCAAGTACAACTCCTTCTCCGCCTCCCGATCTCCGCCTATGCTAACCAACGACCGCGCCTCCAACATTCCTCGTCGTATCGAGATCCCTAGCCCTACTCTCTCTCAGAACTCATCCACCACCACCACTCCACCGCCCACTCCGCCGGAGACGCCGCGAGGGGACGATATGAATAGACTGGCCAGGAGAAGAACCATTGATTATCCTCGCCGTCGCCCTTTGGAAGGATCTGACCCAACCAGCACCCCTTCTGTTTATGATTGGATCGTTATAACTGCTTTAGATCGTTGA

Coding sequence (CDS)

ATGAGTTTCCTCCACAAGCTTTGGGACGAAACCCTCGCTGGTCCCGCGCCGGATTCCGGCCTCAGTCGCCTCCGCAAGTACAACTCCTTCTCCGCCTCCCGATCTCCGCCTATGCTAACCAACGACCGCGCCTCCAACATTCCTCGTCGTATCGAGATCCCTAGCCCTACTCTCTCTCAGAACTCATCCACCACCACCACTCCACCGCCCACTCCGCCGGAGACGCCGCGAGGGGACGATATGAATAGACTGGCCAGGAGAAGAACCATTGATTATCCTCGCCGTCGCCCTTTGGAAGGATCTGACCCAACCAGCACCCCTTCTGTTTATGATTGGATCGTTATAACTGCTTTAGATCGTTGA
BLAST of CmoCh01G000150 vs. Swiss-Prot
Match: DRMH4_ARATH (Dormancy-associated protein homolog 4 OS=Arabidopsis thaliana GN=At1g54070 PE=3 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 8.4e-12
Identity = 50/135 (37.04%), Postives = 70/135 (51.85%), Query Frame = 1

Query: 1   MSFLHKLWDETLAGPAPDSGLSRLRKYNSFSASR-SPPMLTND---------RASNIPR- 60
           M FLHKLWDET+AGP PD+GL +LRK++S S  R SPP L++D         + +N  R 
Sbjct: 1   MGFLHKLWDETVAGPTPDNGLGKLRKHDSLSTVRSSPPSLSSDQVTRSIMVTKGNNNVRG 60

Query: 61  ----RIEIPSPTLSQNSSTTTTPPPTPPETPRGDDMNRLARRRTIDYPRRRPLEGSDPTS 120
               +++  SPT S ++  T   P TP          ++            P  G D  +
Sbjct: 61  LRKLKMDPDSPTCSSSNPGTPLTPGTPCYALGPFTAGKI------------PSSGEDDAA 120

BLAST of CmoCh01G000150 vs. TrEMBL
Match: A0A0A0L9F5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G646010 PE=4 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 5.1e-40
Identity = 98/139 (70.50%), Postives = 105/139 (75.54%), Query Frame = 1

Query: 1   MSFLHKLWDETLAGPAPDSGLSRLRKYNSFSASRSPPMLTNDRAS------NIPRRIEIP 60
           MSFL KLWDETLAGPAPDSGLSRLRKYNSFSASRSPPML+ND  S      NIP RI+IP
Sbjct: 1   MSFLQKLWDETLAGPAPDSGLSRLRKYNSFSASRSPPMLSNDVLSNNSNNINIPPRIQIP 60

Query: 61  SPTLSQN-----------SSTTTTPPPTPPETPRG--DDMNRLARRRTIDYPRRRPLEGS 120
           SPTLSQ+            ST  TPP TPPETPR   D   RL RRR++DYPRRRPLEG+
Sbjct: 61  SPTLSQSPPSFPESPMAAPSTPRTPPSTPPETPRSGEDHAKRLGRRRSVDYPRRRPLEGA 120

BLAST of CmoCh01G000150 vs. TrEMBL
Match: B9GXQ9_POPTR (Dormancy/auxin associated family protein OS=Populus trichocarpa GN=POPTR_0003s06820g PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 1.3e-14
Identity = 62/142 (43.66%), Postives = 74/142 (52.11%), Query Frame = 1

Query: 1   MSFLHKLWDETLAGPAPDSGLSRLRKYNSFSASRSPPM------------------LTND 60
           M FLHKLWDETLAGP PDSGL +LRKY+SFS   SPP+                  +   
Sbjct: 1   MGFLHKLWDETLAGPMPDSGLGKLRKYDSFSVRSSPPVDAAAANSIEDMNITRSITIVRT 60

Query: 61  RASNIPRRIEI---PSPTLSQNSSTTTTP-PPTPPETPRGDDMNRLARRRTIDYPRRRPL 120
            +S   R I +    SP      ST TTP  P    TPRG D  R+  R++ D      L
Sbjct: 61  NSSKYLRNISVDPCSSPVSPATPSTPTTPLTPGITGTPRG-DFRRIKARKSSD----EAL 120

BLAST of CmoCh01G000150 vs. TrEMBL
Match: A0A061GBU9_THECC (Dormancy/auxin associated family protein, putative OS=Theobroma cacao GN=TCM_029211 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 2.2e-14
Identity = 57/134 (42.54%), Postives = 78/134 (58.21%), Query Frame = 1

Query: 1   MSFLHKLWDETLAGPAPDSGLSRLRKYNSFSASRSPP--MLTNDRASNIPRRIEI----- 60
           M FLHKLWDETLAGP P++GL +LRKY+SFS++RS P  ++  +    I R I I     
Sbjct: 1   MGFLHKLWDETLAGPMPETGLGKLRKYDSFSSTRSSPAPVVDGNNKMMITRSITILKSNS 60

Query: 61  --------PSPTLSQNSSTTTTPPPTPPETPRGDDMNRLARRRTIDYPRRRPLEGSDPTS 120
                   PS T    S ++T   P  P TPRGD     +R+ + +      LE ++ + 
Sbjct: 61  GFRNLSVEPSSTPDSPSGSSTPGTPFSPGTPRGDFRRFTSRKSSAE-----ALESAE-SR 120

BLAST of CmoCh01G000150 vs. TrEMBL
Match: I1KHG1_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_07G043000 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 3.7e-14
Identity = 56/131 (42.75%), Postives = 77/131 (58.78%), Query Frame = 1

Query: 1   MSFLHKLWDETLAGPAPDSGLSRLRKYNSFSASRSPPMLTNDRASNIP--RRIEIPSPTL 60
           M FLHKLWDETLAGPAP++GL +LRKYNSFS   S   + +  A ++P  R I I     
Sbjct: 3   MGFLHKLWDETLAGPAPETGLGKLRKYNSFSGGSS---VRSTVAEHVPISRSITIVRSQS 62

Query: 61  SQNSSTTTTPP--PTPPETP-----RGDDMNRLARRR--TIDYPRRRPLEGSDPTSTPSV 120
              ++TTT+ P  PT P TP      G D  +L RR+  T++    R         +P++
Sbjct: 63  GFGTTTTTSAPSAPTTPRTPLTPEAPGGDFKKLTRRKSSTVESAENR---------SPTI 121

BLAST of CmoCh01G000150 vs. TrEMBL
Match: D7TZM6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_09s0002g00700 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 4.8e-14
Identity = 56/133 (42.11%), Postives = 74/133 (55.64%), Query Frame = 1

Query: 1   MSFLHKLWDETLAGPAPDSGLSRLRKYNSFSASRSPPMLTNDRASNIPRRIEI------- 60
           M FL KLWDET+AGP P++GL +LRKY S SA+RSPP++  D    + R I I       
Sbjct: 1   MGFLDKLWDETVAGPPPETGLGKLRKYKSLSAARSPPIINPDEV-QVTRSITILKTNSSF 60

Query: 61  ----PSPTLSQNSSTTTTPPPTP--PETPRGDDMNRLARRRTIDYPRRRPLEGSDPTSTP 120
               P      NS   ++ P +P  P TP GD      R+  ++       E ++P S P
Sbjct: 61  RNFSPDSVSVPNSPAGSSAPESPFTPGTPTGDYKTDARRKAALE-----AFERAEPRS-P 120

BLAST of CmoCh01G000150 vs. TAIR10
Match: AT1G54070.1 (AT1G54070.1 Dormancy/auxin associated family protein)

HSP 1 Score: 71.2 bits (173), Expect = 4.8e-13
Identity = 50/135 (37.04%), Postives = 70/135 (51.85%), Query Frame = 1

Query: 1   MSFLHKLWDETLAGPAPDSGLSRLRKYNSFSASR-SPPMLTND---------RASNIPR- 60
           M FLHKLWDET+AGP PD+GL +LRK++S S  R SPP L++D         + +N  R 
Sbjct: 1   MGFLHKLWDETVAGPTPDNGLGKLRKHDSLSTVRSSPPSLSSDQVTRSIMVTKGNNNVRG 60

Query: 61  ----RIEIPSPTLSQNSSTTTTPPPTPPETPRGDDMNRLARRRTIDYPRRRPLEGSDPTS 120
               +++  SPT S ++  T   P TP          ++            P  G D  +
Sbjct: 61  LRKLKMDPDSPTCSSSNPGTPLTPGTPCYALGPFTAGKI------------PSSGEDDAA 120

BLAST of CmoCh01G000150 vs. NCBI nr
Match: gi|700203330|gb|KGN58463.1| (hypothetical protein Csa_3G646010 [Cucumis sativus])

HSP 1 Score: 171.8 bits (434), Expect = 7.3e-40
Identity = 98/139 (70.50%), Postives = 105/139 (75.54%), Query Frame = 1

Query: 1   MSFLHKLWDETLAGPAPDSGLSRLRKYNSFSASRSPPMLTNDRAS------NIPRRIEIP 60
           MSFL KLWDETLAGPAPDSGLSRLRKYNSFSASRSPPML+ND  S      NIP RI+IP
Sbjct: 1   MSFLQKLWDETLAGPAPDSGLSRLRKYNSFSASRSPPMLSNDVLSNNSNNINIPPRIQIP 60

Query: 61  SPTLSQN-----------SSTTTTPPPTPPETPRG--DDMNRLARRRTIDYPRRRPLEGS 120
           SPTLSQ+            ST  TPP TPPETPR   D   RL RRR++DYPRRRPLEG+
Sbjct: 61  SPTLSQSPPSFPESPMAAPSTPRTPPSTPPETPRSGEDHAKRLGRRRSVDYPRRRPLEGA 120

BLAST of CmoCh01G000150 vs. NCBI nr
Match: gi|659120743|ref|XP_008460332.1| (PREDICTED: auxin-repressed 12.5 kDa protein-like [Cucumis melo])

HSP 1 Score: 162.9 bits (411), Expect = 3.4e-37
Identity = 95/139 (68.35%), Postives = 102/139 (73.38%), Query Frame = 1

Query: 1   MSFLHKLWDETLAGPAPDSGLSRLRKYNSFSASRSPPMLTNDRAS------NIPRRIEIP 60
           MSFL KLWDETLAGPAPDSGLSRLRKYNSFSASRSPPML+ND  S      NIP  I+IP
Sbjct: 1   MSFLQKLWDETLAGPAPDSGLSRLRKYNSFSASRSPPMLSNDVLSNNNSNNNIPPTIQIP 60

Query: 61  SPTLSQN-----------SSTTTTPPPTPPETPRG--DDMNRLARRRTIDYPRRRPLEGS 120
           SPTLSQ+            ST  TPP TPPET R   D + RL RRR++DYP RRPLEG 
Sbjct: 61  SPTLSQSPTSFPESPMPAPSTPRTPPSTPPETLRSGEDHVKRLGRRRSVDYPGRRPLEGP 120

BLAST of CmoCh01G000150 vs. NCBI nr
Match: gi|1009111680|ref|XP_015902145.1| (PREDICTED: auxin-repressed 12.5 kDa protein isoform X1 [Ziziphus jujuba])

HSP 1 Score: 92.0 bits (227), Expect = 7.4e-16
Identity = 58/132 (43.94%), Postives = 74/132 (56.06%), Query Frame = 1

Query: 1   MSFLHKLWDETLAGPAPDSGLSRLRKYNSFSASRSPPMLTND-----------RASNIPR 60
           M FLHKLWDETLAGPAPD+GL +LRKY+SFSA+RSP M   D             SN   
Sbjct: 1   MGFLHKLWDETLAGPAPDAGLGKLRKYDSFSATRSPSMALEDVPVTRSITLLRTRSNTVA 60

Query: 61  RIEIPSPTLSQNSSTTTTPPPTP--PETPRGDDMNRLARRRTIDYPRRRPLEGSDPTSTP 120
            + +  P     S  T+T P TP  PETP      +  RR++         + ++PTS  
Sbjct: 61  GLSVDVPCSVPESPATSTTPTTPLTPETPAEGYFKKFTRRKS----PAAEFDRAEPTSL- 120

BLAST of CmoCh01G000150 vs. NCBI nr
Match: gi|743881581|ref|XP_011036509.1| (PREDICTED: auxin-repressed 12.5 kDa protein-like isoform X2 [Populus euphratica])

HSP 1 Score: 89.4 bits (220), Expect = 4.8e-15
Identity = 57/137 (41.61%), Postives = 74/137 (54.01%), Query Frame = 1

Query: 1   MSFLHKLWDETLAGPAPDSGLSRLRKYNSFSASRSPPM------------------LTND 60
           M FLHKLWDETLAGP PDSGL +LRKY+SFS   SPP+                  +   
Sbjct: 1   MGFLHKLWDETLAGPMPDSGLGKLRKYDSFSVRSSPPVDAAAANSIEDMNITRSITIVRT 60

Query: 61  RASNIPRRIEIPSPTLSQNSSTTTTPPPTPPETPRGDDMNRLARRRTIDYPRRRPLEGSD 120
            +S   R I + S +  ++ +T +TP      TPRG D  R+  R++ D      LE  +
Sbjct: 61  NSSKCLRNISVNSCSAPESPATPSTPTTPLTRTPRG-DFRRITTRKSAD----EALESGE 120

BLAST of CmoCh01G000150 vs. NCBI nr
Match: gi|720018273|ref|XP_010261733.1| (PREDICTED: auxin-repressed 12.5 kDa protein [Nelumbo nucifera])

HSP 1 Score: 88.6 bits (218), Expect = 8.2e-15
Identity = 56/131 (42.75%), Postives = 80/131 (61.07%), Query Frame = 1

Query: 1   MSFLHKLWDETLAGPAPDSGLSRLRKYNSFSASRSPPMLTND----------RASNIPRR 60
           M FL KLWD+ +AGP P++GL +LRKY+SFSASR PP++T+D          + ++  R 
Sbjct: 1   MGFLDKLWDDIVAGPKPETGLGKLRKYDSFSASRPPPLITDDIPISRSITIIKTNSKFRN 60

Query: 61  IEIPSPTLSQNSSTTTTP-PPTPPETPRGDDMNRLARRRTIDYPRRRPLEGSDPTSTPSV 120
               S ++  + + + TP  P  P TP G+D  RL RR++        LE + P S P+V
Sbjct: 61  FSGDSGSVPSSPAGSNTPGSPFSPATP-GEDFRRLMRRKSTS----EVLERAQPRS-PTV 120

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
DRMH4_ARATH8.4e-1237.04Dormancy-associated protein homolog 4 OS=Arabidopsis thaliana GN=At1g54070 PE=3 ... [more]
Match NameE-valueIdentityDescription
A0A0A0L9F5_CUCSA5.1e-4070.50Uncharacterized protein OS=Cucumis sativus GN=Csa_3G646010 PE=4 SV=1[more]
B9GXQ9_POPTR1.3e-1443.66Dormancy/auxin associated family protein OS=Populus trichocarpa GN=POPTR_0003s06... [more]
A0A061GBU9_THECC2.2e-1442.54Dormancy/auxin associated family protein, putative OS=Theobroma cacao GN=TCM_029... [more]
I1KHG1_SOYBN3.7e-1442.75Uncharacterized protein OS=Glycine max GN=GLYMA_07G043000 PE=4 SV=1[more]
D7TZM6_VITVI4.8e-1442.11Putative uncharacterized protein OS=Vitis vinifera GN=VIT_09s0002g00700 PE=4 SV=... [more]
Match NameE-valueIdentityDescription
AT1G54070.14.8e-1337.04 Dormancy/auxin associated family protein[more]
Match NameE-valueIdentityDescription
gi|700203330|gb|KGN58463.1|7.3e-4070.50hypothetical protein Csa_3G646010 [Cucumis sativus][more]
gi|659120743|ref|XP_008460332.1|3.4e-3768.35PREDICTED: auxin-repressed 12.5 kDa protein-like [Cucumis melo][more]
gi|1009111680|ref|XP_015902145.1|7.4e-1643.94PREDICTED: auxin-repressed 12.5 kDa protein isoform X1 [Ziziphus jujuba][more]
gi|743881581|ref|XP_011036509.1|4.8e-1541.61PREDICTED: auxin-repressed 12.5 kDa protein-like isoform X2 [Populus euphratica][more]
gi|720018273|ref|XP_010261733.1|8.2e-1542.75PREDICTED: auxin-repressed 12.5 kDa protein [Nelumbo nucifera][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR008406DRM/ARP
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh01G000150.1CmoCh01G000150.1mRNA


Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008406Dormancy/auxin associated proteinPFAMPF05564Auxin_repressedcoord: 7..113
score: 2.
NoneNo IPR availablePANTHERPTHR33565FAMILY NOT NAMEDcoord: 3..119
score: 1.3
NoneNo IPR availablePANTHERPTHR33565:SF3DORMANCY/AUXIN ASSOCIATED FAMILY PROTEINcoord: 3..119
score: 1.3

The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmoCh01G000150CmoCh14G012330Cucurbita moschata (Rifu)cmocmoB202
CmoCh01G000150CmoCh08G007900Cucurbita moschata (Rifu)cmocmoB379