CmoCh00G001440 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh00G001440
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionRetrotransposon protein, putative, Ty1-copia subclass
LocationCmo_Chr00 : 26172041 .. 26173011 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACAAACTCAATAGTACAATTACTCGCTTCTGAGAAATTAAACGGCGACAACTACACAACTTGGAAATCAAACCTAAACACAATACTGGTCATTGATGATTTAAAGTTTGTTTTAACTGAGGAGTGTCCTCCAAACCCAAACTCAAATGCAAACCGAACAGCTCGGGATGCATATGACAGATGGATAAAGGCAAATGACAAAGCCCGAGTGTACATTCTAGCCAGCATATCTGATGTTTTGGCTAAGAAACACGATGTTATGGGTACTGCTAAAGAGATTATGGAATCTCTAAAAGGGATGTTTGGACAACCGTCCTTCTCCCTTAGACATGAAGCCATAAAATACATTTACAACTGCCGTATGAAAGAAGGGACCTCAGTTAGAGAACATGTCCTGGACATGATGGTCCATTTCAATGTGGCAGAAGAAAATGAAGCTGTCATTGATGAGAAGAGTCAAGTCAGTTTTATCATGATGTCTCTTCCGAAGAGCTTCTTCCAGTTCCGCACCAATGTGGTTATGAACAAAATAGAATATAACTTGACTGCTCTTCTCAATGAGCTACAGACTTATCAGTCCCTCTTAACAAACAAGGGACAAACAGGAGAAGCAAATGTTGCCATCTCCAAGAAATTACTACGAGGATCGTCCTCCCAAAATAAGTCTGGACCTTCAACTTCTAAAAGTGTTTTGATGAAGAAGAAGGGAAAAGGGAAAAATAAGATTCCTACTAACCGCAAGAACAAGGTTCAAAAAGCAGATAAAGGAAAATGTTTCCATTGCAACGAAAACGGGCACTGGAAGAGAAATTGCCCAAAATACCTTGCAGAGAAGAAAGCCGAAAAGACACAACAAGGTAAATATGATTTACTCGTTGTAGAAATGTGTTTAGTAGAGTATGACAACTCAACTTGGATACTAGATTCAGGGGCGACTAATCATATTTGTTCTTTTTACCAGGAAACTAG

mRNA sequence

ATGACAAACTCAATAGTACAATTACTCGCTTCTGAGAAATTAAACGGCGACAACTACACAACTTGGAAATCAAACCTAAACACAATACTGGTCATTGATGATTTAAAGTTTGTTTTAACTGAGGAGTGTCCTCCAAACCCAAACTCAAATGCAAACCGAACAGCTCGGGATGCATATGACAGATGGATAAAGGCAAATGACAAAGCCCGAGTGTACATTCTAGCCAGCATATCTGATGTTTTGGCTAAGAAACACGATGTTATGGGTACTGCTAAAGAGATTATGGAATCTCTAAAAGGGATGTTTGGACAACCGTCCTTCTCCCTTAGACATGAAGCCATAAAATACATTTACAACTGCCGTATGAAAGAAGGGACCTCAGTTAGAGAACATGTCCTGGACATGATGGTCCATTTCAATGTGGCAGAAGAAAATGAAGCTGTCATTGATGAGAAGAGTCAAGTCAGTTTTATCATGATGTCTCTTCCGAAGAGCTTCTTCCAGTTCCGCACCAATGTGGTTATGAACAAAATAGAATATAACTTGACTGCTCTTCTCAATGAGCTACAGACTTATCAGTCCCTCTTAACAAACAAGGGACAAACAGGAGAAGCAAATGTTGCCATCTCCAAGAAATTACTACGAGGATCGTCCTCCCAAAATAAGTCTGGACCTTCAACTTCTAAAAGTGTTTTGATGAAGAAGAAGGGAAAAGGGAAAAATAAGATTCCTACTAACCGCAAGAACAAGGTTCAAAAAGCAGATAAAGGAAAATGTTTCCATTGCAACGAAAACGGGCACTGGAAGAGAAATTGCCCAAAATACCTTGCAGAGAAGAAAGCCGAAAAGACACAACAAGGAAACTAG

Coding sequence (CDS)

ATGACAAACTCAATAGTACAATTACTCGCTTCTGAGAAATTAAACGGCGACAACTACACAACTTGGAAATCAAACCTAAACACAATACTGGTCATTGATGATTTAAAGTTTGTTTTAACTGAGGAGTGTCCTCCAAACCCAAACTCAAATGCAAACCGAACAGCTCGGGATGCATATGACAGATGGATAAAGGCAAATGACAAAGCCCGAGTGTACATTCTAGCCAGCATATCTGATGTTTTGGCTAAGAAACACGATGTTATGGGTACTGCTAAAGAGATTATGGAATCTCTAAAAGGGATGTTTGGACAACCGTCCTTCTCCCTTAGACATGAAGCCATAAAATACATTTACAACTGCCGTATGAAAGAAGGGACCTCAGTTAGAGAACATGTCCTGGACATGATGGTCCATTTCAATGTGGCAGAAGAAAATGAAGCTGTCATTGATGAGAAGAGTCAAGTCAGTTTTATCATGATGTCTCTTCCGAAGAGCTTCTTCCAGTTCCGCACCAATGTGGTTATGAACAAAATAGAATATAACTTGACTGCTCTTCTCAATGAGCTACAGACTTATCAGTCCCTCTTAACAAACAAGGGACAAACAGGAGAAGCAAATGTTGCCATCTCCAAGAAATTACTACGAGGATCGTCCTCCCAAAATAAGTCTGGACCTTCAACTTCTAAAAGTGTTTTGATGAAGAAGAAGGGAAAAGGGAAAAATAAGATTCCTACTAACCGCAAGAACAAGGTTCAAAAAGCAGATAAAGGAAAATGTTTCCATTGCAACGAAAACGGGCACTGGAAGAGAAATTGCCCAAAATACCTTGCAGAGAAGAAAGCCGAAAAGACACAACAAGGAAACTAG
Homology
[Close]
BLAST of CmoCh00G001440 vs. TrEMBL
Match: E2GK51_BRYDI (Gag/pol protein (Fragment) OS=Bryonia dioica PE=4 SV=1)

HSP 1 Score: 395.6 bits (1015), Expect = 5.2e-107
Identity = 208/288 (72.22%), Postives = 240/288 (83.33%), Query Frame = 1 

Query: 1   MTNSIVQLLASEKLNGDNYTTWKSNLNTILVIDDLKFVLTEECPPNPNSNANRTARDAYD 60
           M  SIVQLLASEKLNGDNY+ WKSNLNTILV+DDL+FVLTEECP  P  NANRT R+AYD
Sbjct: 1   MNTSIVQLLASEKLNGDNYSAWKSNLNTILVVDDLRFVLTEECPQAPALNANRTVREAYD 60

Query: 61  RWIKANDKARVYILASISDVLAKKHDVMGTAKEIMESLKGMFGQPSFSLRHEAIKYIYNC 120
           RW+KANDKARVYILAS++DVLAKKHD + TAK IM+SL+ MFGQPS+SLRHEAIK+IY  
Sbjct: 61  RWVKANDKARVYILASMTDVLAKKHDSIATAKGIMDSLREMFGQPSWSLRHEAIKHIYTK 120

Query: 121 RMKEGTSVREHVLDMMVHFNVAEENEAVIDEKSQVSFIMMSLPKSFFQFRTNVVMNKIEY 180
           RMKEGTSVREHVLDMM+HFN+AE N   IDE +QVSFI+ SLPKSF  F+TN  +NKIE+
Sbjct: 121 RMKEGTSVREHVLDMMMHFNIAEVNGGPIDEANQVSFILQSLPKSFVPFQTNASLNKIEF 180

Query: 181 NLTALLNELQTYQSLLTNKGQTGEANVAISK-KLLRGSSSQNKSGPSTSKSVLMKKKGKG 240
           NLT LLNELQ +Q+L  +KG+  EANVA++K K +RGSSS+NK GPS ++   MKKKGKG
Sbjct: 181 NLTTLLNELQRFQNLTLSKGKEVEANVAVTKRKFIRGSSSKNKVGPSKAQ---MKKKGKG 240

Query: 241 KNKIPTNRKNKVQKADKGKCFHCNENGHWKRNCPKYLAEKKAEKTQQG 288
             K P   K K + ADKGKCFHCN++GHWKRNCPKYLAEKKAEK  QG
Sbjct: 241 --KAPNTSKVK-KNADKGKCFHCNQDGHWKRNCPKYLAEKKAEKATQG 282

[Close]
BLAST of CmoCh00G001440 vs. TrEMBL
Match: A0A165U314_9ROSI (Gag/pol protein OS=Momordica dioica PE=4 SV=1)

HSP 1 Score: 253.1 bits (645), Expect = 4.2e-64
Identity = 150/294 (51.02%), Postives = 191/294 (64.97%), Query Frame = 1 

Query: 1   MTNSIVQLLASEKLNGDNYTTWKSNLNTILV-IDDLKFVLTEECPPNPNSNANRTARDAY 60
           M  SIVQLLASEK +G N++ WKSNL  +L+ +DDL+FVLT      P  NANR  ++AY
Sbjct: 1   MNTSIVQLLASEKDDGSNFSAWKSNLIKLLLKVDDLRFVLTRALGDAPALNANRDVKNAY 60

Query: 61  DRWIKANDKARVYILASISDVLAKKHDVMGTAKEIMESLKGMFGQPSFSLRHEAIKYIYN 120
           DRW+KAND  R  +LA++S  L ++++ + TAK IM+ LK +F + ++SLRHEA    Y 
Sbjct: 61  DRWVKANDVQRAVMLATMSPELQRRYERIATAKGIMDELKFIFQKNTWSLRHEAFTKFYT 120

Query: 121 CRMKEGTSVREHVLDMMVHFNVAEENEAVIDEKSQVSFIMMSLPKSFFQFRTNVVMNKIE 180
            RMKEGTSV EHVLDM ++ + AE N   IDE + VSFI+ SLPKS+  F  N  MNK+ 
Sbjct: 121 KRMKEGTSVSEHVLDMAMYSSRAEVNGGPIDEANAVSFILQSLPKSYKGFLLNASMNKMN 180

Query: 181 YNLTALLNELQTYQSL-LTNKGQTGEANVAISKKLLRG-----SSSQNKSGPSTSKSVLM 240
            +   L NELQ +Q+L L+ + +    N   +K+  R       SS+NK GP   K   M
Sbjct: 181 KSPGELFNELQRFQNLTLSKEVEANMVNKVTAKRFKRNDKGKKGSSKNKVGPDEIK---M 240

Query: 241 KKKGKGKNKIPTNRKNKVQKADKGKCFHCNENGHWKRNCPKYLAEKKAEKTQQG 288
           KKKGKGK      +  K   ADKGKCFHCNE GHWKRNCPKYLA+KKAEK   G
Sbjct: 241 KKKGKGK---AAKKGKKGSAADKGKCFHCNEMGHWKRNCPKYLADKKAEKATSG 288

[Close]
BLAST of CmoCh00G001440 vs. TrEMBL
Match: E2GK52_BRYDI (Gag/pol protein (Fragment) OS=Bryonia dioica PE=4 SV=1)

HSP 1 Score: 231.5 bits (589), Expect = 1.3e-57
Identity = 116/162 (71.60%), Postives = 135/162 (83.33%), Query Frame = 1 

Query: 1   MTNSIVQLLASEKLNGDNYTTWKSNLNTILVIDDLKFVLTEECPPNPNSNANRTARDAYD 60
           M  SIVQLLASEKLN DNY+ WKSNLNTILV++DL+F+LTEEC   P  NANRT R+AYD
Sbjct: 1   MNTSIVQLLASEKLNSDNYSAWKSNLNTILVVEDLRFILTEECHQAPALNANRTVREAYD 60

Query: 61  RWIKANDKARVYILASISDVLAKKHDVMGTAKEIMESLKGMFGQPSFSLRHEAIKYIYNC 120
           RW KANDKA VYILAS++DVLAKK+D + T K IM+S + MFGQPS+SLRHEAIK IY  
Sbjct: 61  RWGKANDKACVYILASMTDVLAKKYDSIATTKGIMDSFREMFGQPSWSLRHEAIKRIYTK 120

Query: 121 RMKEGTSVREHVLDMMVHFNVAEENEAVIDEKSQVSFIMMSL 163
           RMKEGTSVREHVLDMM+HFN+A+ +   IDE +QVSFI+ SL
Sbjct: 121 RMKEGTSVREHVLDMMMHFNIAKVHGGPIDEANQVSFILQSL 162

[Close]
BLAST of CmoCh00G001440 vs. TrEMBL
Match: W9SH28_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_004989 PE=4 SV=1)

HSP 1 Score: 216.5 bits (550), Expect = 4.3e-53
Identity = 108/201 (53.73%), Postives = 147/201 (73.13%), Query Frame = 1 

Query: 1   MTNSIVQLLASEKLNGDNYTTWKSNLNTILVIDDLKFVLTEECPPNPNSNANRTARDAYD 60
           M+N I+ LL +EKL+GDNY  WKSN+N +L+ +D KFVL +ECPP P +NA +TAR+ YD
Sbjct: 1   MSNLIIILLVTEKLDGDNYAKWKSNMNILLICEDYKFVLVDECPPEPAANATKTAREPYD 60

Query: 61  RWIKANDKARVYILASISDVLAKKHDVMGTAKEIMESLKGMFGQPSFSLRHEAIKYIYNC 120
           RWIKAN+KA+ ++LAS+SDVL KKH+ M TA EIMESL+ MFG PS   R +A++   N 
Sbjct: 61  RWIKANNKAKCFMLASMSDVLCKKHEEMETAYEIMESLEAMFGAPSEKARLDAVRAFMND 120

Query: 121 RMKEGTSVREHVLDMMVHFNVAEENEAVIDEKSQVSFIMMSLPKSFFQFRTNVVMNKIEY 180
           +MK+G+SV+ HVL+M+ H + AE N A IDE +Q+  I+ SL   F +F  N VMNK + 
Sbjct: 121 KMKKGSSVKAHVLNMIDHLHDAELNGARIDEATQLGIILESLSPDFHEFVNNFVMNKKKS 180

Query: 181 NLTALLNELQTYQSLLTNKGQ 202
           NLT L+N+LQ ++S    KG+
Sbjct: 181 NLTELMNDLQNFESTNQAKGR 201

[Close]
BLAST of CmoCh00G001440 vs. TrEMBL
Match: W9RXH5_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_001554 PE=4 SV=1)

HSP 1 Score: 210.3 bits (534), Expect = 3.1e-51
Identity = 109/199 (54.77%), Postives = 144/199 (72.36%), Query Frame = 1 

Query: 1   MTNSIVQLLASEKLNGDNYTTWKSNLNTILVIDDLKFVLTEECPPNPNSNANRTARDAYD 60
           M N I+ LLA+EKL+GDNY  WKSN+N +LV +D KF+L EECP  P  NA++TAR+ YD
Sbjct: 1   MPNPIITLLATEKLDGDNYAKWKSNMNILLVCEDYKFLLAEECPLEPADNASKTAREPYD 60

Query: 61  RWIKANDKARVYILASISDVLAKKHDVMGTAKEIMESLKGMFGQPSFSLRHEAIKYIYNC 120
           RWIKAN+KA+ ++LAS+SDVL KKH  M TA EIMESL+ MFG PS     +A++   N 
Sbjct: 61  RWIKANNKAKCFMLASMSDVLRKKHGEMETAYEIMESLEAMFGAPSEKACLDAVRAFMND 120

Query: 121 RMKEGTSVREHVLDMMVHFNVAEENEAVIDEKSQVSFIMMSLPKSFFQFRTNVVMNKIEY 180
           +MK+G+SV+ HVL+M+ H +  E N A IDE +QV  I+ SL   F +F  N+VMNK + 
Sbjct: 121 KMKKGSSVKAHVLNMIDHLHDTELNGARIDEATQVGIILESLSPDFHEFVNNLVMNKKKS 180

Query: 181 NLTALLNELQTYQSLLTNK 200
           NLT L+N+LQ ++S  TNK
Sbjct: 181 NLTELMNDLQNFES--TNK 197

[Close]
BLAST of CmoCh00G001440 vs. NCBI nr
Match: gi|299474487|gb|ADJ18449.1| (gag/pol protein [Bryonia dioica])

HSP 1 Score: 395.6 bits (1015), Expect = 7.5e-107
Identity = 208/288 (72.22%), Postives = 240/288 (83.33%), Query Frame = 1 

Query: 1   MTNSIVQLLASEKLNGDNYTTWKSNLNTILVIDDLKFVLTEECPPNPNSNANRTARDAYD 60
           M  SIVQLLASEKLNGDNY+ WKSNLNTILV+DDL+FVLTEECP  P  NANRT R+AYD
Sbjct: 1   MNTSIVQLLASEKLNGDNYSAWKSNLNTILVVDDLRFVLTEECPQAPALNANRTVREAYD 60

Query: 61  RWIKANDKARVYILASISDVLAKKHDVMGTAKEIMESLKGMFGQPSFSLRHEAIKYIYNC 120
           RW+KANDKARVYILAS++DVLAKKHD + TAK IM+SL+ MFGQPS+SLRHEAIK+IY  
Sbjct: 61  RWVKANDKARVYILASMTDVLAKKHDSIATAKGIMDSLREMFGQPSWSLRHEAIKHIYTK 120

Query: 121 RMKEGTSVREHVLDMMVHFNVAEENEAVIDEKSQVSFIMMSLPKSFFQFRTNVVMNKIEY 180
           RMKEGTSVREHVLDMM+HFN+AE N   IDE +QVSFI+ SLPKSF  F+TN  +NKIE+
Sbjct: 121 RMKEGTSVREHVLDMMMHFNIAEVNGGPIDEANQVSFILQSLPKSFVPFQTNASLNKIEF 180

Query: 181 NLTALLNELQTYQSLLTNKGQTGEANVAISK-KLLRGSSSQNKSGPSTSKSVLMKKKGKG 240
           NLT LLNELQ +Q+L  +KG+  EANVA++K K +RGSSS+NK GPS ++   MKKKGKG
Sbjct: 181 NLTTLLNELQRFQNLTLSKGKEVEANVAVTKRKFIRGSSSKNKVGPSKAQ---MKKKGKG 240

Query: 241 KNKIPTNRKNKVQKADKGKCFHCNENGHWKRNCPKYLAEKKAEKTQQG 288
             K P   K K + ADKGKCFHCN++GHWKRNCPKYLAEKKAEK  QG
Sbjct: 241 --KAPNTSKVK-KNADKGKCFHCNQDGHWKRNCPKYLAEKKAEKATQG 282

[Close]
BLAST of CmoCh00G001440 vs. NCBI nr
Match: gi|659113933|ref|XP_008456826.1| (PREDICTED: uncharacterized protein LOC103496664 [Cucumis melo])

HSP 1 Score: 329.3 bits (843), Expect = 6.6e-87
Identity = 174/291 (59.79%), Postives = 225/291 (77.32%), Query Frame = 1 

Query: 1   MTNSIVQLLASEKLNGDNYTTWKSNLNTILVIDDLKFVLTEECPPNPNSNANRTARDAYD 60
           MT++ + +L ++K NG+NY +WK+ +NT+L+IDDL+FVL E+CP    +NA RT R+AY+
Sbjct: 1   MTSATLNMLVADKFNGNNYASWKNTINTVLIIDDLRFVLVEKCPQVSAANATRTVREAYE 60

Query: 61  RWIKANDKARVYILASISDVLAKKHDVMGTAKEIMESLKGMFGQPSFSLRHEAIKYIYNC 120
           RW KAN+KAR Y+LAS+S+VLAKK++ M TA+EIM+SL+ MFGQ S+ ++H+A+KYIYN 
Sbjct: 61  RWAKANEKARAYLLASLSEVLAKKNESMLTAREIMDSLQEMFGQASYQIKHDALKYIYNA 120

Query: 121 RMKEGTSVREHVLDMMVHFNVAEENEAVIDEKSQVSFIMMSLPKSFFQFRTNVVMNKIEY 180
           RM +G  VREHVL+MMV+FNVAE N AVIDE +QVSFI+ SL +SF QFR+NVVMNKI Y
Sbjct: 121 RMNDGALVREHVLNMMVYFNVAEMNGAVIDEANQVSFILESLLESFLQFRSNVVMNKIAY 180

Query: 181 NLTALLNELQTYQSLLTNKGQTGEANVAIS-KKLLRGSSSQNKSGPSTSKSVLMKKK--G 240
            LT LLNELQT++SL+  KGQ GEANVA S +K  RGS+S  K  PS+S +   KKK  G
Sbjct: 181 TLTTLLNELQTFESLMKIKGQKGEANVATSTRKFHRGSTSGTKYMPSSSGNKKWKKKKGG 240

Query: 241 KG-KNKIPTNRKNKVQKADKGKCFHCNENGHWKRNCPKYLAEKKAEKTQQG 288
           +G K  +   + +K  K  KG CFHCN+ GHWKRNCPKYLAEKK  K +QG
Sbjct: 241 QGNKANLAATKTSKKAKVAKGICFHCNQEGHWKRNCPKYLAEKK--KAKQG 289

[Close]
BLAST of CmoCh00G001440 vs. NCBI nr
Match: gi|778697615|ref|XP_011654359.1| (PREDICTED: uncharacterized protein LOC105435361 [Cucumis sativus])

HSP 1 Score: 269.2 bits (687), Expect = 8.1e-69
Identity = 130/169 (76.92%), Postives = 150/169 (88.76%), Query Frame = 1 

Query: 1   MTNSIVQLLASEKLNGDNYTTWKSNLNTILVIDDLKFVLTEECPPNPNSNANRTARDAYD 60
           M +SIVQLLASEK+N DNY  WKSNLNTILV+DDL+FVLTEECP NP SNANRT R+AYD
Sbjct: 1   MNSSIVQLLASEKINDDNYAAWKSNLNTILVVDDLRFVLTEECPQNPASNANRTGREAYD 60

Query: 61  RWIKANDKARVYILASISDVLAKKHDVMGTAKEIMESLKGMFGQPSFSLRHEAIKYIYNC 120
           RWIKAN+KARVYILAS+SDVLAKKH+ + TAKEIM+SL+GMFGQP +SLRHEA+KYIY  
Sbjct: 61  RWIKANEKARVYILASMSDVLAKKHESLATAKEIMDSLRGMFGQPEWSLRHEAVKYIYTK 120

Query: 121 RMKEGTSVREHVLDMMVHFNVAEENEAVIDEKSQVSFIMMSLPKSFFQF 170
           RMKEGTSVREHVLDMM+HFN+A+ N  +I+E +QVSFI+ SLPKSF  F
Sbjct: 121 RMKEGTSVREHVLDMMMHFNIAQVNGGLIEEVNQVSFILESLPKSFIPF 169

[Close]
BLAST of CmoCh00G001440 vs. NCBI nr
Match: gi|1019597807|gb|AMY96445.1| (gag/pol protein [Momordica dioica])

HSP 1 Score: 253.1 bits (645), Expect = 6.0e-64
Identity = 150/294 (51.02%), Postives = 191/294 (64.97%), Query Frame = 1 

Query: 1   MTNSIVQLLASEKLNGDNYTTWKSNLNTILV-IDDLKFVLTEECPPNPNSNANRTARDAY 60
           M  SIVQLLASEK +G N++ WKSNL  +L+ +DDL+FVLT      P  NANR  ++AY
Sbjct: 1   MNTSIVQLLASEKDDGSNFSAWKSNLIKLLLKVDDLRFVLTRALGDAPALNANRDVKNAY 60

Query: 61  DRWIKANDKARVYILASISDVLAKKHDVMGTAKEIMESLKGMFGQPSFSLRHEAIKYIYN 120
           DRW+KAND  R  +LA++S  L ++++ + TAK IM+ LK +F + ++SLRHEA    Y 
Sbjct: 61  DRWVKANDVQRAVMLATMSPELQRRYERIATAKGIMDELKFIFQKNTWSLRHEAFTKFYT 120

Query: 121 CRMKEGTSVREHVLDMMVHFNVAEENEAVIDEKSQVSFIMMSLPKSFFQFRTNVVMNKIE 180
            RMKEGTSV EHVLDM ++ + AE N   IDE + VSFI+ SLPKS+  F  N  MNK+ 
Sbjct: 121 KRMKEGTSVSEHVLDMAMYSSRAEVNGGPIDEANAVSFILQSLPKSYKGFLLNASMNKMN 180

Query: 181 YNLTALLNELQTYQSL-LTNKGQTGEANVAISKKLLRG-----SSSQNKSGPSTSKSVLM 240
            +   L NELQ +Q+L L+ + +    N   +K+  R       SS+NK GP   K   M
Sbjct: 181 KSPGELFNELQRFQNLTLSKEVEANMVNKVTAKRFKRNDKGKKGSSKNKVGPDEIK---M 240

Query: 241 KKKGKGKNKIPTNRKNKVQKADKGKCFHCNENGHWKRNCPKYLAEKKAEKTQQG 288
           KKKGKGK      +  K   ADKGKCFHCNE GHWKRNCPKYLA+KKAEK   G
Sbjct: 241 KKKGKGK---AAKKGKKGSAADKGKCFHCNEMGHWKRNCPKYLADKKAEKATSG 288

[Close]
BLAST of CmoCh00G001440 vs. NCBI nr
Match: gi|659086056|ref|XP_008443743.1| (PREDICTED: uncharacterized protein LOC103487255, partial [Cucumis melo])

HSP 1 Score: 251.1 bits (640), Expect = 2.3e-63
Identity = 121/159 (76.10%), Postives = 139/159 (87.42%), Query Frame = 1 

Query: 1   MTNSIVQLLASEKLNGDNYTTWKSNLNTILVIDDLKFVLTEECPPNPNSNANRTARDAYD 60
           M +SIVQLLA EKLNGDNY  WKSNLNTILV+DDL+FVLTEECP  P+SNA++T+R AYD
Sbjct: 1   MNSSIVQLLAFEKLNGDNYAAWKSNLNTILVVDDLRFVLTEECPQTPSSNASQTSRKAYD 60

Query: 61  RWIKANDKARVYILASISDVLAKKHDVMGTAKEIMESLKGMFGQPSFSLRHEAIKYIYNC 120
           RWIKAN+KARVYILAS+SDVLAKKH+ + TAKEIM SLKGMFGQP +SLRHE IKYIY  
Sbjct: 61  RWIKANEKARVYILASMSDVLAKKHESLATAKEIMNSLKGMFGQPKWSLRHETIKYIYTK 120

Query: 121 RMKEGTSVREHVLDMMVHFNVAEENEAVIDEKSQVSFIM 160
           RMKEGTS++EHVLDMM+HFN+ E N   IDE +QVSFI+
Sbjct: 121 RMKEGTSIKEHVLDMMMHFNIFEVNGGAIDEANQVSFIL 159

The following BLAST results are available for this feature:
BLAST of CmoCh00G001440 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh00G001440 vs. TrEMBL
Match NameE-valueIdentityDescription
E2GK51_BRYDI5.2e-10772.22Gag/pol protein (Fragment) OS=Bryonia dioica PE=4 SV=1[more]
A0A165U314_9ROSI4.2e-6451.02Gag/pol protein OS=Momordica dioica PE=4 SV=1[more]
E2GK52_BRYDI1.3e-5771.60Gag/pol protein (Fragment) OS=Bryonia dioica PE=4 SV=1[more]
W9SH28_9ROSA4.3e-5353.73Uncharacterized protein OS=Morus notabilis GN=L484_004989 PE=4 SV=1[more]
W9RXH5_9ROSA3.1e-5154.77Uncharacterized protein OS=Morus notabilis GN=L484_001554 PE=4 SV=1[more]
BLAST of CmoCh00G001440 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmoCh00G001440 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|299474487|gb|ADJ18449.1|7.5e-10772.22gag/pol protein [Bryonia dioica][more]
gi|659113933|ref|XP_008456826.1|6.6e-8759.79PREDICTED: uncharacterized protein LOC103496664 [Cucumis melo][more]
gi|778697615|ref|XP_011654359.1|8.1e-6976.92PREDICTED: uncharacterized protein LOC105435361 [Cucumis sativus][more]
gi|1019597807|gb|AMY96445.1|6.0e-6451.02gag/pol protein [Momordica dioica][more]
gi|659086056|ref|XP_008443743.1|2.3e-6376.10PREDICTED: uncharacterized protein LOC103487255, partial [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
cellular_component GO:0005575 cellular_component
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh00G001440.1CmoCh00G001440.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh00G001440CmaCh00G001500Cucurbita maxima (Rimu)cmacmoB000
CmoCh00G001440CmaCh00G002170Cucurbita maxima (Rimu)cmacmoB001
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None