CmoCh00G001260 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh00G001260
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	NAD(P)H-quinone oxidoreductase subunit 2 A, chloroplastic
Location	Cmo_Chr00 : 24077051 .. 24077640 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATATTGGGGAATCTCATTGCTATTACTCAAACAAGCATGAAACGTATGCTTGCGTATTCGTCCATCGGTCAAATCGGATATGTAATTATTGGAATAATTGTTGGAGACTCAAATGGTGGATATGCAAGCATGATAACTTATATGCTGTTCTATATCGCCATGAATCTAGGAACTTTTGCTCGCATTGTATCATTTGGTCTACGTACCGGAACTGATAACATTCGAGATTATGCAGGATTATACACAAAAGATCCTCTTTTGGCGCCAACCAAGTAAATAGGCTTACTGTAGGATAGACACTAGGCACGTGTCCTTTATTCTTTATTAATATGATTTTTGTTTGATGATGTTTTACGATGATTATTATATTTCTTGGTTTCAATAGGACTCCTTACGAGCGTTGTTTCTATCTACTATTATCTCAAAATAATCAAGTTATTAATGACTGGACGAAACCAAGAAATAACCCCTCACGTGCGAAATTATAGAAGATCTCCTTTAAGATCAAACAATTCCATCGAATTGAGTATGATTGTATGTGTGATAGCATCTACTATACCAGGAATATCAATGAACCCGATTATTGA

mRNA sequence

ATGATATTGGGGAATCTCATTGCTATTACTCAAACAAGCATGAAACGTATGCTTGCGTATTCGTCCATCGGTCAAATCGGATATGTAATTATTGGAATAATTGTTGGAGACTCAAATGGTGGATATGCAAGCATGATAACTTATATGCTGTTCTATATCGCCATGAATCTAGGAACTTTTGCTCGCATTGTATCATTTGGTCTACGACTCCTTACGAGCGTTGTTTCTATCTACTATTATCTCAAAATAATCAAGTTATTAATGACTGGACGAAACCAAGAAATAACCCCTCACAAGATCTCCTTTAAGATCAAACAATTCCATCGAATTGAGTATGATTGTATGTGTGATAGCATCTACTATACCAGGAATATCAATGAACCCGATTATTGA

Coding sequence (CDS)

ATGATATTGGGGAATCTCATTGCTATTACTCAAACAAGCATGAAACGTATGCTTGCGTATTCGTCCATCGGTCAAATCGGATATGTAATTATTGGAATAATTGTTGGAGACTCAAATGGTGGATATGCAAGCATGATAACTTATATGCTGTTCTATATCGCCATGAATCTAGGAACTTTTGCTCGCATTGTATCATTTGGTCTACGACTCCTTACGAGCGTTGTTTCTATCTACTATTATCTCAAAATAATCAAGTTATTAATGACTGGACGAAACCAAGAAATAACCCCTCACAAGATCTCCTTTAAGATCAAACAATTCCATCGAATTGAGTATGATTGTATGTGTGATAGCATCTACTATACCAGGAATATCAATGAACCCGATTATTGA

Homology

[Close]

BLAST of CmoCh00G001260 vs. Swiss-Prot
Match: NU2C2_CUCSA (NAD(P)H-quinone oxidoreductase subunit 2 B, chloroplastic OS=Cucumis sativus GN=ndhB2 PE=3 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 2.8e-29
Identity = 71/78 (91.03%), Postives = 72/78 (92.31%), Query Frame = 1


Query: 1   MILGNLIAITQTSMKRMLAYSSIGQIGYVIIGIIVGDSNGGYASMITYMLFYIAMNLGTF 60
           MILGNLIAITQTSMKRMLAYSSIGQIGYVIIGIIVGDSNGGYASMITYMLFYIAMNLGTF
Sbjct: 307 MILGNLIAITQTSMKRMLAYSSIGQIGYVIIGIIVGDSNGGYASMITYMLFYIAMNLGTF 366

Query: 61  ARIVSFGLRLLTSVVSIY 79
           ARIVSFGLR  T  +  Y
Sbjct: 367 ARIVSFGLRTGTDNIRDY 384

[Close]

BLAST of CmoCh00G001260 vs. Swiss-Prot
Match: NU2C1_CUCSA (NAD(P)H-quinone oxidoreductase subunit 2 A, chloroplastic OS=Cucumis sativus GN=ndhB1 PE=3 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 2.8e-29
Identity = 71/78 (91.03%), Postives = 72/78 (92.31%), Query Frame = 1


Query: 1   MILGNLIAITQTSMKRMLAYSSIGQIGYVIIGIIVGDSNGGYASMITYMLFYIAMNLGTF 60
           MILGNLIAITQTSMKRMLAYSSIGQIGYVIIGIIVGDSNGGYASMITYMLFYIAMNLGTF
Sbjct: 307 MILGNLIAITQTSMKRMLAYSSIGQIGYVIIGIIVGDSNGGYASMITYMLFYIAMNLGTF 366

Query: 61  ARIVSFGLRLLTSVVSIY 79
           ARIVSFGLR  T  +  Y
Sbjct: 367 ARIVSFGLRTGTDNIRDY 384

[Close]

BLAST of CmoCh00G001260 vs. Swiss-Prot
Match: NU2C_ALLTE (NAD(P)H-quinone oxidoreductase subunit 2, chloroplastic OS=Allium textile GN=ndhB PE=3 SV=2)

HSP 1 Score: 125.9 bits (315), Expect = 3.1e-28
Identity = 69/78 (88.46%), Postives = 71/78 (91.03%), Query Frame = 1


Query: 1   MILGNLIAITQTSMKRMLAYSSIGQIGYVIIGIIVGDSNGGYASMITYMLFYIAMNLGTF 60
           MILGNLIAITQTSMKRMLAYSSIGQIGYVIIGIIVGDSN GYASMITYMLFYI+MNLGTF
Sbjct: 307 MILGNLIAITQTSMKRMLAYSSIGQIGYVIIGIIVGDSNNGYASMITYMLFYISMNLGTF 366

Query: 61  ARIVSFGLRLLTSVVSIY 79
           ARIVSFGLR  T  +  Y
Sbjct: 367 ARIVSFGLRTGTDNIRDY 384

[Close]

BLAST of CmoCh00G001260 vs. Swiss-Prot
Match: NU2C_ASPOF (NAD(P)H-quinone oxidoreductase subunit 2, chloroplastic OS=Asparagus officinalis GN=ndhB PE=3 SV=2)

HSP 1 Score: 125.6 bits (314), Expect = 4.1e-28
Identity = 69/78 (88.46%), Postives = 71/78 (91.03%), Query Frame = 1


Query: 1   MILGNLIAITQTSMKRMLAYSSIGQIGYVIIGIIVGDSNGGYASMITYMLFYIAMNLGTF 60
           MILGNLIAITQTSMKRMLAYSSIGQIGYVIIGIIVGDSN GYASMITYMLFYI+MNLGTF
Sbjct: 307 MILGNLIAITQTSMKRMLAYSSIGQIGYVIIGIIVGDSNDGYASMITYMLFYISMNLGTF 366

Query: 61  ARIVSFGLRLLTSVVSIY 79
           ARIVSFGLR  T  +  Y
Sbjct: 367 ARIVSFGLRTGTDNIRDY 384

[Close]

BLAST of CmoCh00G001260 vs. Swiss-Prot
Match: NU2C_PHOTN (NAD(P)H-quinone oxidoreductase subunit 2, chloroplastic OS=Phormium tenax GN=ndhB PE=3 SV=2)

HSP 1 Score: 125.6 bits (314), Expect = 4.1e-28
Identity = 69/78 (88.46%), Postives = 71/78 (91.03%), Query Frame = 1


Query: 1   MILGNLIAITQTSMKRMLAYSSIGQIGYVIIGIIVGDSNGGYASMITYMLFYIAMNLGTF 60
           MILGNLIAITQTSMKRMLAYSSIGQIGYVIIGIIVGDSN GYASMITYMLFYI+MNLGTF
Sbjct: 307 MILGNLIAITQTSMKRMLAYSSIGQIGYVIIGIIVGDSNDGYASMITYMLFYISMNLGTF 366

Query: 61  ARIVSFGLRLLTSVVSIY 79
           ARIVSFGLR  T  +  Y
Sbjct: 367 ARIVSFGLRTGTDNIRDY 384

[Close]

BLAST of CmoCh00G001260 vs. TrEMBL
Match: A0A0E0DWX9_9ORYZ (Uncharacterized protein OS=Oryza meridionalis PE=3 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 5.0e-33
Identity = 89/140 (63.57%), Postives = 97/140 (69.29%), Query Frame = 1


Query: 1   MILGNLIAITQTSMKRMLAYSSIGQIGYVIIGIIVGDSNGGYASMITYMLFYIAMNLGTF 60
           MILGNL+AITQTSMKRMLAYSSIGQIGYVIIGIIVGDSN GYASMITYMLFYI+MNLGTF
Sbjct: 354 MILGNLLAITQTSMKRMLAYSSIGQIGYVIIGIIVGDSNDGYASMITYMLFYISMNLGTF 413

Query: 61  ARIVSFGL-------------------------------------RLLTSVVSIYYYLKI 104
           A IV FGL                                      LLTSV+SIYYYLKI
Sbjct: 414 ACIVLFGLPLCLLSLGGLPPLAGFFGKLYLFWCGWQAGLYFLVSIGLLTSVLSIYYYLKI 473

[Close]

BLAST of CmoCh00G001260 vs. TrEMBL
Match: V4MFW5_EUTSA (Uncharacterized protein (Fragment) OS=Eutrema salsugineum GN=EUTSA_v10027086mg PE=4 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 1.5e-32
Identity = 87/128 (67.97%), Postives = 91/128 (71.09%), Query Frame = 1


Query: 1   MILGNLIAITQTSMKRMLAYSSIGQIGYVIIGIIVGDSNGGYASMITYMLFYIAMNLGTF 60
           MIL NLIAITQTSMKRMLAYSSIGQIGYVIIGIIV DSNGGYASMITYM+FYI+MNLGTF
Sbjct: 12  MILENLIAITQTSMKRMLAYSSIGQIGYVIIGIIVRDSNGGYASMITYMMFYISMNLGTF 71

Query: 61  ARIVSFGLR------------------------------LLTSVVSIYYYLKIIKLLMTG 99
           A I+ FGLR                                TSV+SIYYYLKIIKLLMTG
Sbjct: 72  ACIILFGLRGLPPLAVFFGKLHLFWCGWQADLYFLVSIGFFTSVLSIYYYLKIIKLLMTG 131

[Close]

BLAST of CmoCh00G001260 vs. TrEMBL
Match: K4BRB7_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 6.8e-30
Identity = 80/105 (76.19%), Postives = 87/105 (82.86%), Query Frame = 1


Query: 1   MILGNLIAITQTSMKRMLAYSSIGQIGYVIIGIIVGDSNGGYASMITYMLFYIAMNLGTF 60
           MILGNLIAI QTS+K MLAYSSIGQI YVIIGII G SN GYASMITYMLFYI+MNLGTF
Sbjct: 13  MILGNLIAIIQTSLKCMLAYSSIGQIRYVIIGIIFGGSNDGYASMITYMLFYISMNLGTF 72

Query: 61  ARIVSFGL-RLLTSVVSIYYYLKIIKLLMTGRNQEITPHKISFKI 105
           A +    L  LLTSV+SI YYLKIIK LMT RNQEITPH  +++I
Sbjct: 73  AGLYFLVLIGLLTSVISICYYLKIIKFLMTRRNQEITPHMRNYRI 117

[Close]

BLAST of CmoCh00G001260 vs. TrEMBL
Match: K4AUQ7_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 2.2e-28
Identity = 75/104 (72.12%), Postives = 87/104 (83.65%), Query Frame = 1


Query: 1   MILGNLIAITQTSMKRMLAYSSIGQIGYVIIGIIVGDSNGGYASMITYMLFYIAMNLGTF 60
           M+LGNLIAI QT +KRMLAY SI QIGYVII IIVGDSN GYASMITYM+FY++MNLGTF
Sbjct: 1   MVLGNLIAIIQTRIKRMLAYLSIRQIGYVIIEIIVGDSNDGYASMITYMMFYMSMNLGTF 60

Query: 61  ARIVSFGL-RLLTSVVSIYYYLKIIKLLMTGRNQEITPHKISFK 104
           AR+  F L  LL  VVSI YYLK+IKLL+TGRNQE+T H  +++
Sbjct: 61  ARLYFFILIGLLARVVSINYYLKLIKLLLTGRNQELTLHLRNYR 104

[Close]

BLAST of CmoCh00G001260 vs. TrEMBL
Match: A0A0S2IF95_9ROSI (NADH-quinone oxidoreductase subunit N OS=Cucurbita ficifolia GN=ndhB PE=3 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 3.1e-27
Identity = 71/78 (91.03%), Postives = 72/78 (92.31%), Query Frame = 1


Query: 1   MILGNLIAITQTSMKRMLAYSSIGQIGYVIIGIIVGDSNGGYASMITYMLFYIAMNLGTF 60
           MILGNLIAITQTSMKRMLAYSSIGQIGYVIIGIIVGDSNGGYASMITYMLFYIAMNLGTF
Sbjct: 307 MILGNLIAITQTSMKRMLAYSSIGQIGYVIIGIIVGDSNGGYASMITYMLFYIAMNLGTF 366

Query: 61  ARIVSFGLRLLTSVVSIY 79
           ARIVSFGLR  T  +  Y
Sbjct: 367 ARIVSFGLRTGTDNIRDY 384

[Close]

BLAST of CmoCh00G001260 vs. TAIR10
Match: ATCG00890.1 (ATCG00890.1 NADH-Ubiquinone/plastoquinone (complex I) protein)

HSP 1 Score: 122.1 bits (305), Expect = 2.5e-28
Identity = 67/78 (85.90%), Postives = 69/78 (88.46%), Query Frame = 1


Query: 1   MILGNLIAITQTSMKRMLAYSSIGQIGYVIIGIIVGDSNGGYASMITYMLFYIAMNLGTF 60
           MI GNLIAITQTSMKRMLAYSSIGQIGYVIIGIIVGDSNGGYASMITYMLFYIAMNLGTF
Sbjct: 184 MIFGNLIAITQTSMKRMLAYSSIGQIGYVIIGIIVGDSNGGYASMITYMLFYIAMNLGTF 243

Query: 61  ARIVSFGLRLLTSVVSIY 79
           A I+ FGLR  T  +  Y
Sbjct: 244 ACIILFGLRTGTDNIRDY 261

[Close]

BLAST of CmoCh00G001260 vs. TAIR10
Match: ATCG01250.1 (ATCG01250.1 NADH-Ubiquinone/plastoquinone (complex I) protein)

HSP 1 Score: 122.1 bits (305), Expect = 2.5e-28
Identity = 67/78 (85.90%), Postives = 69/78 (88.46%), Query Frame = 1


Query: 1   MILGNLIAITQTSMKRMLAYSSIGQIGYVIIGIIVGDSNGGYASMITYMLFYIAMNLGTF 60
           MI GNLIAITQTSMKRMLAYSSIGQIGYVIIGIIVGDSNGGYASMITYMLFYIAMNLGTF
Sbjct: 184 MIFGNLIAITQTSMKRMLAYSSIGQIGYVIIGIIVGDSNGGYASMITYMLFYIAMNLGTF 243

Query: 61  ARIVSFGLRLLTSVVSIY 79
           A I+ FGLR  T  +  Y
Sbjct: 244 ACIILFGLRTGTDNIRDY 261

[Close]

BLAST of CmoCh00G001260 vs. NCBI nr
Match: gi|567218130|ref|XP_006412694.1| (hypothetical protein EUTSA_v10027086mg, partial [Eutrema salsugineum])

HSP 1 Score: 147.1 bits (370), Expect = 2.1e-32
Identity = 87/128 (67.97%), Postives = 91/128 (71.09%), Query Frame = 1


Query: 1   MILGNLIAITQTSMKRMLAYSSIGQIGYVIIGIIVGDSNGGYASMITYMLFYIAMNLGTF 60
           MIL NLIAITQTSMKRMLAYSSIGQIGYVIIGIIV DSNGGYASMITYM+FYI+MNLGTF
Sbjct: 12  MILENLIAITQTSMKRMLAYSSIGQIGYVIIGIIVRDSNGGYASMITYMMFYISMNLGTF 71

Query: 61  ARIVSFGLR------------------------------LLTSVVSIYYYLKIIKLLMTG 99
           A I+ FGLR                                TSV+SIYYYLKIIKLLMTG
Sbjct: 72  ACIILFGLRGLPPLAVFFGKLHLFWCGWQADLYFLVSIGFFTSVLSIYYYLKIIKLLMTG 131

[Close]

BLAST of CmoCh00G001260 vs. NCBI nr
Match: gi|972464990|ref|WP_059051740.1| (hypothetical protein [Myroides odoratimimus])

HSP 1 Score: 129.4 bits (324), Expect = 4.5e-27
Identity = 71/78 (91.03%), Postives = 72/78 (92.31%), Query Frame = 1


Query: 1   MILGNLIAITQTSMKRMLAYSSIGQIGYVIIGIIVGDSNGGYASMITYMLFYIAMNLGTF 60
           MILGNLIAITQTSMKRMLAYSSIGQIGYVIIGIIVGDSNGGYASMITYMLFYIAMNLGTF
Sbjct: 57  MILGNLIAITQTSMKRMLAYSSIGQIGYVIIGIIVGDSNGGYASMITYMLFYIAMNLGTF 116

Query: 61  ARIVSFGLRLLTSVVSIY 79
           ARIVSFGLR  T  +  Y
Sbjct: 117 ARIVSFGLRTGTDNIRDY 134

[Close]

BLAST of CmoCh00G001260 vs. NCBI nr
Match: gi|68164848|ref|YP_247644.1| (NADH dehydrogenase subunit 2 [Cucumis sativus])

HSP 1 Score: 129.4 bits (324), Expect = 4.5e-27
Identity = 71/78 (91.03%), Postives = 72/78 (92.31%), Query Frame = 1


Query: 1   MILGNLIAITQTSMKRMLAYSSIGQIGYVIIGIIVGDSNGGYASMITYMLFYIAMNLGTF 60
           MILGNLIAITQTSMKRMLAYSSIGQIGYVIIGIIVGDSNGGYASMITYMLFYIAMNLGTF
Sbjct: 307 MILGNLIAITQTSMKRMLAYSSIGQIGYVIIGIIVGDSNGGYASMITYMLFYIAMNLGTF 366

Query: 61  ARIVSFGLRLLTSVVSIY 79
           ARIVSFGLR  T  +  Y
Sbjct: 367 ARIVSFGLRTGTDNIRDY 384

[Close]

BLAST of CmoCh00G001260 vs. NCBI nr
Match: gi|590000471|ref|YP_009004100.1| (NADH-plastoquinone oxidoreductase subunit 2 [Cucumis hystrix])

HSP 1 Score: 129.4 bits (324), Expect = 4.5e-27
Identity = 71/78 (91.03%), Postives = 72/78 (92.31%), Query Frame = 1


Query: 1   MILGNLIAITQTSMKRMLAYSSIGQIGYVIIGIIVGDSNGGYASMITYMLFYIAMNLGTF 60
           MILGNLIAITQTSMKRMLAYSSIGQIGYVIIGIIVGDSNGGYASMITYMLFYIAMNLGTF
Sbjct: 307 MILGNLIAITQTSMKRMLAYSSIGQIGYVIIGIIVGDSNGGYASMITYMLFYIAMNLGTF 366

Query: 61  ARIVSFGLRLLTSVVSIY 79
           ARIVSFGLR  T  +  Y
Sbjct: 367 ARIVSFGLRTGTDNIRDY 384

[Close]

BLAST of CmoCh00G001260 vs. NCBI nr
Match: gi|568244955|ref|YP_008963737.1| (NADH-plastoquinone oxidoreductase subunit 2 (chloroplast) [Liquidambar formosana])

HSP 1 Score: 128.3 bits (321), Expect = 1.0e-26
Identity = 70/78 (89.74%), Postives = 72/78 (92.31%), Query Frame = 1


Query: 1   MILGNLIAITQTSMKRMLAYSSIGQIGYVIIGIIVGDSNGGYASMITYMLFYIAMNLGTF 60
           MILGNLIAITQTSMKRMLAYSSIGQIGYVIIGIIVGDSNGGYASMITYMLFYI+MNLGTF
Sbjct: 307 MILGNLIAITQTSMKRMLAYSSIGQIGYVIIGIIVGDSNGGYASMITYMLFYISMNLGTF 366

Query: 61  ARIVSFGLRLLTSVVSIY 79
           ARIVSFGLR  T  +  Y
Sbjct: 367 ARIVSFGLRTGTDNIRDY 384

The following BLAST results are available for this feature:

BLAST of CmoCh00G001260 vs. Swiss-Prot


Match Name	E-value	Identity	Description
NU2C2_CUCSA	2.8e-29	91.03	NAD(P)H-quinone oxidoreductase subunit 2 B, chloroplastic OS=Cucumis sativus GN=...	[more]
NU2C1_CUCSA	2.8e-29	91.03	NAD(P)H-quinone oxidoreductase subunit 2 A, chloroplastic OS=Cucumis sativus GN=...	[more]
NU2C_ALLTE	3.1e-28	88.46	NAD(P)H-quinone oxidoreductase subunit 2, chloroplastic OS=Allium textile GN=ndh...	[more]
NU2C_ASPOF	4.1e-28	88.46	NAD(P)H-quinone oxidoreductase subunit 2, chloroplastic OS=Asparagus officinalis...	[more]
NU2C_PHOTN	4.1e-28	88.46	NAD(P)H-quinone oxidoreductase subunit 2, chloroplastic OS=Phormium tenax GN=ndh...	[more]

BLAST of CmoCh00G001260 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0E0DWX9_9ORYZ	5.0e-33	63.57	Uncharacterized protein OS=Oryza meridionalis PE=3 SV=1	[more]
V4MFW5_EUTSA	1.5e-32	67.97	Uncharacterized protein (Fragment) OS=Eutrema salsugineum GN=EUTSA_v10027086mg P...	[more]
K4BRB7_SOLLC	6.8e-30	76.19	Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1	[more]
K4AUQ7_SOLLC	2.2e-28	72.12	Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1	[more]
A0A0S2IF95_9ROSI	3.1e-27	91.03	NADH-quinone oxidoreductase subunit N OS=Cucurbita ficifolia GN=ndhB PE=3 SV=1	[more]

BLAST of CmoCh00G001260 vs. TAIR10


Match Name	E-value	Identity	Description
ATCG00890.1	2.5e-28	85.90	ATCG00890.1 NADH-Ubiquinone/plastoquinone (complex I) protein	[more]
ATCG01250.1	2.5e-28	85.90	ATCG01250.1 NADH-Ubiquinone/plastoquinone (complex I) protein	[more]

BLAST of CmoCh00G001260 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|567218130\|ref\|XP_006412694.1\|	2.1e-32	67.97	hypothetical protein EUTSA_v10027086mg, partial [Eutrema salsugineum]	[more]
gi\|972464990\|ref\|WP_059051740.1\|	4.5e-27	91.03	hypothetical protein [Myroides odoratimimus]	[more]
gi\|68164848\|ref\|YP_247644.1\|	4.5e-27	91.03	NADH dehydrogenase subunit 2 [Cucumis sativus]	[more]
gi\|590000471\|ref\|YP_009004100.1\|	4.5e-27	91.03	NADH-plastoquinone oxidoreductase subunit 2 [Cucumis hystrix]	[more]
gi\|568244955\|ref\|YP_008963737.1\|	1.0e-26	89.74	NADH-plastoquinone oxidoreductase subunit 2 (chloroplast) [Liquidambar formosana...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001750	ND/Mrp_mem

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006120	mitochondrial electron transport, NADH to ubiquinone
biological_process	GO:0019684	photosynthesis, light reaction
biological_process	GO:0015992	proton transport
biological_process	GO:0006814	sodium ion transport
biological_process	GO:0006744	ubiquinone biosynthetic process
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005886	plasma membrane
molecular_function	GO:0008137	NADH dehydrogenase (ubiquinone) activity
molecular_function	GO:0048038	quinone binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh00G001260.1	CmoCh00G001260.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001750	NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit	PFAM	PF00361	Proton_antipo_M	coord: 1..71 score: 4.1
None	No IPR available	PANTHER	PTHR22773	NADH DEHYDROGENASE	coord: 1..107 score: 2.9
None	No IPR available	PANTHER	PTHR22773:SF86	NAD(P)H-QUINONE OXIDOREDUCTASE SUBUNIT 2 A, CHLOROPLASTIC-RELATED	coord: 1..107 score: 2.9

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh00G001260	Cucurbita maxima (Rimu)	cmacmoB000
CmoCh00G001260	Cucurbita maxima (Rimu)	cmacmoB001