CmoCh00G001220 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh00G001220
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionPlant self-incompatibility protein S1 family
LocationCmo_Chr00 : 21794593 .. 21802017 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
GGGGCCCAGGTTCCAAGGGTCGCGTTACCACCACCAGGACCTTCTAGATATTACATTCATGTGGTTAACGGGCTAAGCAAACTTGGGTTGCTTGTGCATTGTCAGTCTAAAGACGATGACTTGGGGTATCATCGTTTGCTTAATCATGGAGATGATTACCAATGGAACTTCAAGGTTAACTTTTGGGGAACAACCCTCTATTGGTGCAAATTGGAGACGCCACATGCATATGTCTCTTTTGAAAGCTTTTGGCCTGAAACGCAGCACTTATGGCTCCGTGATAGGTGCAAACATGGAACTGTAGGAACTTGTATTTGGACGGCTAAAGATGATGGAATTTACTTGAGAAACTTTCTTGCTAACGTTGATGAATTGATTCACAAGTGGATCTATAAAAGATAGAGAAGCTTTACTACCATCTCCTTTTTGTGGAATTGTCCTTGAGGAACAAATAAAAAATAATGGGATAACACAAAAAGGTTGTTGTTGTTGTTTTCTTTTACTTTTTTTTGTATGAAATGTACTTGATAATGCAGCGTATTGTTGTTCTCCGAAATTTTAAATTAGGAAGAAACAAAAATTAAATTTGTATACGAATACAAGTTTTCAAAATTGTAATATCGTGTTTATATTAAAACTACAAAAAATAATGAGTGTCAAAATTTGTTTGAGTGTCAAAATTTGGTAATCTCAAATTTGCACGAACATGCAATTATGACTCTATAAATAGAGTGATCAAGGTACATGGAAAGAATGCTTGGAAAACTTTGAGAAATTCTCTCAAAACTCTCTCTTTTCATATATTAAATTCCTATCAAGTTTAGTCACTCACCGGATTCCACAATCCTGTTCTAAGGCCCGAGAATAGTAGGAAAGACACTAGTGGTGGTTCAAAATTGGTTCGTGAGGAAAAAGGAATTTGAACTACAAAAGGTTAGTACTTAAGGACCTTGAGTTTTAATGCTCGTGAACATGCTAGTTATTTACTATAATTGATGTTCTAAGAGGGACTAAGATCCAAATTGCTTCCGCATGTGTTATATTAACTCCACCATTCCGTTGGTTAGTGAACAGGTCGGGTAGGATTTTGAGCACGCGGATCGAGCTCCAGATCTTTGGGTACTATTTGAGTTACAGAGGGTAGACTGGGTCGTGTACGGTTTCAATTTGAAGCATTCTTTATCTGTTTTATGCACTCCGTTTCTTCGACATCCTATTCTAAATCATCTAGCCTAATCATTCCCCACAAAAGTTTCGAAAAAAACGTTAGTCGTGACACAGTTTTTTAGCATGTACTTCCAACGTCGCAGCTTAGGGTTTCCGAAAATAGGGTTTCGATTTGAAGCACTTTTTATCTGTTTTTTATGCACTTCGTTTCTTCGAAATACTATTCTAAATAATCAAGCCTAATCATTCCCCAAAAACAATTTTGAAAAACGTTGGCCGTGACTCGGTTTTTTTAGCATGTTTCTCAAACGTTCGAGTTTAGGGTTTCGATTTAAAGCACTCTTTATCTGTTTTATGCTCTCCGTTTCTTCGAAATTCTATTCTGAATCATCAAGCCTAATCATTCCCCATAAAAGTTTCTAAAAATGTCGAACGTCACTCGATTTTTTTTATAACGTACTTGAAACGTCCGAGTTTAGGGTTTTCGAATTAGGGTTTCGATATGAAGCACTCTTTATCTGTTTTATGCTCCCCGTTTCTTCGAAATACTATTCTAATTCATCAACCCAAATCATTCCCCGCAAAAGTTTCAAAAAACGTCGACCGTGACCAAGTTTTTATTAGCACGTACATCAAACGTCCGAGTTTAGGGTTTCGATTTGAAGCACTCTTTATCTGTATTATGCACTCCGTTTCTTTGAAACTATAGTTCTAGAATTTTTTGAACTTATCTATTCTACCTCACCTTAAAATTTCCAAGGCCCTCGTAAAAAGTTTGAAAGTTCAACCTTAAAAAAAAAATCGGGAATTTAATACCTTGTTGGACTTGGTGCTATACCATACGTAATCTATGAATTGCTTTCTCTATTTTATATTTTCTACCGGTAAGTATTCATATTTTGTTGTCCATTTTATGAAAGTGTTTTAAAAATCAATGAAATATTTATTATTCTTGGGCCAATAACTATTATCCATTCAAGGAATTTTGTTATCGAAAATAATAAATCTCTAAAATTATCCCAAAATTAACCTTAAATTGTGTTGCATAACCGAAATTAGTTAAATGATTAAGCTTCTTACAACCACAGCATGCATTTACATAGTTTCTTGCATGTACTATAAGTATGTGTATTTATTCACATGTCCAACACAAATTGGTAGTTAAGCTAAAGGTTGATTAGGAAATGATAAAGAATATTGTCGTTTTCTTTCTTTTCACGGTGGCTTTAGTTGGGGCCCAGGTTCCAAGGGTCGCGTTACCACCACCAGGACCTTCTAGATATTACATTCATGTGGTTAACGGGCTAAGCAAACTTGGGTTGCTTGTGCATTGTCAGTCTAAAGACGATGACTTGGGGTATCATCGTTTGCTTAATCATGGAGATGATTACCAATGGAACTTCAAGGTTAACTTTTGGGGAACAACCCTCTATTGGTGCAAATTGGAGACGCCACATGCATATGTCTCTTTTGAAAGCTTTTGGCCTGAAACGCAGCACTTATGGCTCCGTGATAGGTGCAAACATGGAACTGTAGGAACTTGTATTTGGACGGCTAAAGATGATGGAATTTACTTGAGAAACTTTCTTGCTAATGTTGATGAATTGATTCACAAGTGGATCTATAAAAGATAGAGAAGCTTTACTACTATCTCCTTTTTGTGGAATTGTCCTTGAGGAACAAATAAAAAATAATGGGATAACACAAAAAGGTTGTTGTTGTTGTTTTCTTTTACTTTTTTTTGTATGAAATGTACTTGATAATGCAGCGTATTGTTGTTCTCCGAAATTTTAAATTAGGAAGAAACAAAAATTAAATTTGTATACGAATACAAGTTTTCAAAATTGTAATATCGTGTTTATATTAAAACTACAAAAAATAATGAGTGTCAAAATTTGTTTGAGTGTCAAAATTTGGTAATCTCAAATTTGCACGAACATGCAATTATGACTCTATAAATAGAGTGATCAAGGTACATGGAAAGAATGCTTGGAAAACTTTGAGAAATTCTCTCAAAACTCTCTCTTTTCATATATTAAATTCCTATCAAGTTTAGTCACTCACCGGATTCCACAATCCTGTTCTAAGGCCCGAGAATAGTAGGAAAGACACTAGTGGTGGTTCAAAATTGGTTCGTGAGGAAAAAGGAATTTGAACTACAAAAGGTTAGTACTTAAGGACCTTGAGTTTTAATGCTCGTGAACATGCTAGTTATTTACTATAATTGATGTTCTAAGAGGGACTAAGATCCAAATTGCTTCCGCATGTGTTATATTAACTCCACCATTCCGTTGGTTAGTGAACAGGTCGGGTAGGATTTTGAGCACGCGGATCGAGCTCCAGATCTTTGGGTACTATTTGAGTTACAGAGGGTAGACTGGGTCGTGTACGGTTTCAATTTGAAGCATTCTTTATCTGTTTTATGCACTCCGTTTCTTCGACATCCTATTCTAAATCATCTAGCCTAATCATTCCCCACAAAAGTTTCGAAAAAAACGTTAGTCGTGACACAGTTTTTTAGCATGTACTTCCAACGTCGCAGCTTAGGGTTTCCGAAAATAGGGTTTCGATTTGAAGCACTTTTTATCTGTTTTTTATGCACTTCGTTTCTTCGAAATACTATTCTAAATAATCAAGCCTAATCATTCCCCAAAAACAATTTTGAAAAACGTTGGCCGTGACTCGGTTTTTTTAGCATGTTTCTCAAACGTTCGAGTTTAGGGTTTCGATTTAAAGCACTCTTTATCTGTTTTATGCTCTCCGTTTCTTCGAAATTCTATTCTGAATCATCAAGCCTAATCATTCCCCATAAAAGTTTCTAAAAATGTCGAACGTCACTCGATTTTTTTTATAACGTACTTGAAACGTCCGAGTTTAGGGTTTTCGAATTAGGGTTTCGATATGAAGCACTCTTTATCTGTTTTATGCTCCCCGTTTCTTCGAAATACTATTCTAATTCATCAACCCAAATCATTCCCCGCAAAAGTTTCAAAAAACGTCGACCGTGACCAAGTTTTTATTAGCACGTACATCAAACGTCCGAGTTTAGGGTTTCGATTTGAAGCACTCTTTATCTGTATTATGCACTCCGTTTCTTTGAAACTATAGTTCTAGAATTTTTTGAACTTATCTATTCTACCTCACCTTAAAATTTCCAAGGCCCTCGTAAAAAGTTTGAAAGTTCAACCTTAAAAAAAAAATCGGGAATTTAATACCTTGTTGGACTTGGTGCTATACCATACGTAATCTATGAATTGCTTTCTCTATTTTATATTTTCTACCGGTAAGTATTCATATTTTGTTGTCCATTTTATGAAAGTGTTTTAAAAATCAATGAAATATTTATTATTCTTGGGCCAATAACTATTATCCATTCAAGGAATTTTGTTATCGAAAATAATAAATCTCTAAAATTATCCCAAAATTAACCTTAAATTGTGTTGCATAACCGAAATTAGTTAAATGATTAAGCTTCTTACAACCACAGCATGCATTTACATAGTTTCTTGCATGTACTATAAGTATGTGTATTTATTCACATGTCCAACACAAATTGGTAGTTAAGCTAAAGGTTGATTAGGAAATGATAAAGAATATTGTCGTTTTCTTTCTTTTCACGGTGGCTTTAGTTGGGGCCCAGGTTCCAAGGGTCGCGTTACCACCACCAGGACCTTCTAGATATTACATTCATGTGGTTAACGGGCTAAGCAAACTTGGGTTGCTTGTGCATTGTCAGTCTAAAGACGATGACTTGGGGTATCATCGTTTGCTTAATCATGGAGATGATTACCAATGGAACTTCAAGGTTAACTTTTGGGGAACAACCCTCTATTGGTGCAAATTGGAGACGCCACATGCATATGTCTCTTTTGAAAGCTTTTGGCCTGAAACGCAGCACTTATGGCTCCGTGATAGGTGCAAACATGGAACTGTAGGAACTTGTATTTGGACGGCTAAAGATGATGGAATTTACTTGAGAAACTTTCTTGCTAACGTTGATGAATTGATTCACAAGTGGATCTATAAAAGATAGAGAAGCTTTACTACCATCTCCTTTTTGTGGAATTGTCCTTGAGGAACAAATAAAAAATAATGGGATAACACAAAAAGGTTGTTGTTGTTGTTTTCTTTTACTTTTTTTTGTATGAAATGTACTTGATAATGCAGCGTATTGTTGTTCTCCGAAATTTTAAATTAGGAAGAAACAAAAATTAAATTTGTATACGAATACAAGTTTTCAAAATTGTAATATCGTGTTTATATTAAAACTACAAAAAATAATGAGTGTCAAAATTTGTTTGAGTGTCAAAATTTGGTAATCTCAAATTTGCACGAACATGCAATTATGACTCTATAAATAGAGTGATCAAGGTACATGGAAAGAATGCTTGGAAAACTTTGAGAAATTCTCTCAAAACTCTCTCTTTTCATATATTAAATTCCTATCAAGTTTAGTCACTCACCGGATTCCACAATCCTGTTCTAAGGCCCGAGAATAGTAGGAAAGACACTAGTGGTGGTTCAAAATTGGTTCGTGAGGAAAAAGGAATTTGAACTACAAAAGGTTAGTACTTAAGGACCTTGAGTTTTAATGCTCGTGAACATGCTAGTTATTTACTATAATTGATGTTCTAAGAGGGACTAAGATCCAAATTGCTTCCGCATGTGTTATATTAACTCCACCATTCCGTTGGTTAGTGAACAGGTCGGGTAGGATTTTGAGCACGCGGATCGAGCTCCAGATCTTTGGGTACTATTTGAGTTACAGAGGGTAGACTGGGTCGTGTACGGTTTCAATTTGAAGCATTCTTTATCTGTTTTATGCACTCCGTTTCTTCGACATCCTATTCTAAATCATCTAGCCTAATCATTCCCCACAAAAGTTTCGAAAAAAACGTTAGTCGTGACACAGTTTTTTAGCATGTACTTCCAACGTCGCAGCTTAGGGTTTCCGAAAATAGGGTTTCGATTTGAAGCACTTTTTATCTGTTTTTTATGCACTTCGTTTCTTCGAAATACTATTCTAAATAATCAAGCCTAATCATTCCCCAAAAACAATTTTGAAAAACGTTGGCCGTGACTCGGTTTTTTTAGCATGTTTCTCAAACGTTCGAGTTTAGGGTTTCGATTTAAAGCACTCTTTATCTGTTTTATGCTCTCCGTTTCTTCGAAATTCTATTCTGAATCATCAAGCCTAATCATTCCCCATAAAAGTTTCTAAAAATGTCGAACGTCACTCGATTTTTTTTATAACGTACTTGAAACGTCCGAGTTTAGGGTTTTCGAATTAGGGTTTCGATATGAAGCACTCTTTATCTGTTTTATGCTCCCCGTTTCTTCGAAATACTATTCTAATTCATCAACCCAAATCATTCCCCGCAAAAGTTTCAAAAAACGTCGACCGTGACCAAGTTTTTATTAGCACGTACATCAAACGTCCGAGTTTAGGGTTTCGATTTGAAGCACTCTTTATCTGTATTATGCACTCCGTTTCTTTGAAACTATAGTTCTAGAATTTTTTGAACTTATCTATTCTACCTCACCTTAAAATTTCCAAGGCCCTCGTAAAAAGTTTGAAAGTTCAACCTTAAAAAAAAAATCGGGAATTTAATACCTTGTTGGACTTGGTGCTATACCATACGTAATCTATGAATTGCTTTCTCTATTTTATATTTTCTACCGGTAAGTATTCATATTTTGTTGTCCATTTTATGAAAGTGTTTTAAAAATCAATGAAATATTTATTATTCTTGGGCCAATAACTATTATCCATTCAAGGAATTTTGTTATCGAAAATAATAAATCTCTAAAATTATCCCAAAATTAACCTTAAATTGTGTTGCATAACCGAAATTAGTTAAATGATTAAGCTTCTTACAACCACAGCATGCATTTACATAGTTTCTTGCATGTACTATAAGTATGTGTATTTATTCACATGTCCAACACAAATTGGTAGTTAAGCTAAAGGTTGATTAGGAAATGATAAAGAATATTGTCGTTTTCTTTCTTTTCACGGTGGCTTTAGTTGGGGCCCAGGTTCCAAGGGTCGCGTTACCACCACCAGGACCTTCTAGATATTACATTCATGTGGTTAACGGGCTAAGCAAACTTGGGTTGCTTGTGCATTGTCAGTCTAAAGACGATGACTTGGGGTATCATCGTTTGCTTAATCATGGAGATGATTACCAATGGAACTTCAAGGTTAACTTTTGGGGAACAACCCTCTATTGGTGCAAATTGGAGACGCCACATGCA

mRNA sequence

GGGGCCCAGGTTCCAAGGGTCGCGTTACCACCACCAGGACCTTCTAGATATTACATTCATGTGGTTAACGGGCTAAGCAAACTTGGGTTGCTTGTGCATTGTCAGTCTAAAGACGATGACTTGGGGTATCATCGTTTGCTTAATCATGGAGATGATTACCAATGGAACTTCAAGGTTAACTTTTGGGGAACAACCCTCTATTGGTGCAAATTGGAGACGCCACATGCATATGTTCCAAGGGTCGCGTTACCACCACCAGGACCTTCTAGATATTACATTCATGTGGTTAACGGGCTAAGCAAACTTGGGTTGCTTGTGCATTGTCAGTCTAAAGACGATGACTTGGGGTATCATCGTTTGCTTAATCATGGAGATGATTACCAATGGAACTTCAAGGTTAACTTTTGGGGAACAACCCTCTATTGGTGCAAATTGGAGACGCCACATGCATATGTTCCAAGGGTCGCGTTACCACCACCAGGACCTTCTAGATATTACATTCATGTGGTTAACGGGCTAAGCAAACTTGGGTTGCTTGTGCATTGTCAGTCTAAAGACGATGACTTGGGGTATCATCGTTTGCTTAATCATGGAGATGATTACCAATGGAACTTCAAGGTTAACTTTTGGGGAACAACCCTCTATTGGTGCAAATTGGAGACGCCACATGCATATGTTCCAAGGGTCGCGTTACCACCACCAGGACCTTCTAGATATTACATTCATGTGGTTAACGGGCTAAGCAAACTTGGGTTGCTTGTGCATTGTCAGTCTAAAGACGATGACTTGGGGTATCATCGTTTGCTTAATCATGGAGATGATTACCAATGGAACTTCAAGGTTAACTTTTGGGGAACAACCCTCTATTGGTGCAAATTGGAGACGCCACATGCA

Coding sequence (CDS)

GGGGCCCAGGTTCCAAGGGTCGCGTTACCACCACCAGGACCTTCTAGATATTACATTCATGTGGTTAACGGGCTAAGCAAACTTGGGTTGCTTGTGCATTGTCAGTCTAAAGACGATGACTTGGGGTATCATCGTTTGCTTAATCATGGAGATGATTACCAATGGAACTTCAAGGTTAACTTTTGGGGAACAACCCTCTATTGGTGCAAATTGGAGACGCCACATGCATATGTTCCAAGGGTCGCGTTACCACCACCAGGACCTTCTAGATATTACATTCATGTGGTTAACGGGCTAAGCAAACTTGGGTTGCTTGTGCATTGTCAGTCTAAAGACGATGACTTGGGGTATCATCGTTTGCTTAATCATGGAGATGATTACCAATGGAACTTCAAGGTTAACTTTTGGGGAACAACCCTCTATTGGTGCAAATTGGAGACGCCACATGCATATGTTCCAAGGGTCGCGTTACCACCACCAGGACCTTCTAGATATTACATTCATGTGGTTAACGGGCTAAGCAAACTTGGGTTGCTTGTGCATTGTCAGTCTAAAGACGATGACTTGGGGTATCATCGTTTGCTTAATCATGGAGATGATTACCAATGGAACTTCAAGGTTAACTTTTGGGGAACAACCCTCTATTGGTGCAAATTGGAGACGCCACATGCATATGTTCCAAGGGTCGCGTTACCACCACCAGGACCTTCTAGATATTACATTCATGTGGTTAACGGGCTAAGCAAACTTGGGTTGCTTGTGCATTGTCAGTCTAAAGACGATGACTTGGGGTATCATCGTTTGCTTAATCATGGAGATGATTACCAATGGAACTTCAAGGTTAACTTTTGGGGAACAACCCTCTATTGGTGCAAATTGGAGACGCCACATGCA
Homology
[Close]
BLAST of CmoCh00G001220 vs. TrEMBL
Match: B9RWP2_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1023130 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 1.3e-15
Identity = 58/160 (36.25%), Postives = 84/160 (52.50%), Query Frame = 1 

Query: 14  PSRYYIHVVNGLSK-LGLLVHCQSKDDDLGYHRLLNHGDDYQWNFKVNFWGTTLYWCKL- 73
           P +  + V NG+   L L VHC+SKDDDLG  ++L +   + + F  NF  TTLY+C + 
Sbjct: 28  PKKRTVKVTNGIGPGLDLTVHCKSKDDDLGT-KVLPYNGYFSFRFHPNFMDTTLYFCSMS 87

Query: 74  ------------------ETPHAYVPRVALPPPGPS---------RYYIHVVNGLSK-LG 133
                             + PH Y   + + P GPS         R  + + N L++ L 
Sbjct: 88  WHGQSHKFDIYTEDRDKNKCPHDYCGWL-VRPSGPSMNEARFKLKRATVIITNDLNQGLD 147

Query: 134 LLVHCQSKDDDLGYHRLLNHGDDYQWNFKVNFWGTTLYWC 144
           L VHC+SK+DDLG H L  H ++YQ+ F+ NFWG T ++C
Sbjct: 148 LSVHCKSKEDDLGVHILPPH-NNYQFEFQPNFWGVTQFFC 184

[Close]
BLAST of CmoCh00G001220 vs. TrEMBL
Match: B9RTI3_RICCO (RNA binding protein, putative OS=Ricinus communis GN=RCOM_0910760 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 8.6e-12
Identity = 31/57 (54.39%), Postives = 45/57 (78.95%), Query Frame = 1 

Query: 16 RYYIHVVNGLSKLGLLVHCQSKDDDLGYHRLLNHGDDYQWNFKVNFWGTTLYWCKLE 73
          RY++H++N L++  L VHC+SKDDDLG H LL  G+++ + F+VNFWGTTL+WC  +
Sbjct: 31 RYHVHIINDLTRHTLNVHCKSKDDDLGPH-LLQLGEEFHFTFRVNFWGTTLFWCNFK 86

[Close]
BLAST of CmoCh00G001220 vs. TrEMBL
Match: A0A0A0K6N8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G336430 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 2.8e-10
Identity = 34/61 (55.74%), Postives = 42/61 (68.85%), Query Frame = 1 

Query: 15 SRYYIHVVNGLSK-LGLLVHCQSKDDDLGYHRLLNHGDDYQWNFKVNFWGTTLYWCKLET 74
          S + IH+ NGLS    L VHC+SKD DLG  R L+ G +++WNFKVN W TTL+WC L  
Sbjct: 28 SPWEIHIKNGLSDGQALFVHCKSKDSDLG-ERTLSTGAEFKWNFKVNIWDTTLFWCYLRK 87

[Close]
BLAST of CmoCh00G001220 vs. TrEMBL
Match: B9S574_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1722050 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 1.8e-09
Identity = 28/60 (46.67%), Postives = 39/60 (65.00%), Query Frame = 1 

Query: 17 YYIHVVNGLSKLGLL-VHCQSKDDDLGYHRLLNHGDDYQWNFKVNFWGTTLYWCKLETPH 76
          Y++H++N +     L VHC+SKDDDLG H  L HG  Y W+F +N + TTL+WC +   H
Sbjct: 28 YHVHIINEMKNHKFLHVHCKSKDDDLGIHH-LQHGQQYSWHFNINIFATTLFWCYMSPDH 86

[Close]
BLAST of CmoCh00G001220 vs. TrEMBL
Match: M5VJF6_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa024656mg PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 2.3e-09
Identity = 29/57 (50.88%), Postives = 42/57 (73.68%), Query Frame = 1 

Query: 15 SRYYIHVVNGLSKLGLLVHCQSKDDDLGYHRLLNHGDDYQWNFKVNFWGTTLYWCKL 72
          ++Y +HV+NGLSK  L +HCQSKD DLG H L  +  +++W F+ NF+ TTL++C L
Sbjct: 34 NKYRVHVINGLSKDTLTIHCQSKDTDLGIHELAVN-QEFEWEFRTNFFDTTLFFCNL 89

[Close]
BLAST of CmoCh00G001220 vs. TAIR10
Match: AT4G16195.1 (AT4G16195.1 Plant self-incompatibility protein S1 family)

HSP 1 Score: 53.1 bits (126), Expect = 3.3e-07
Identity = 26/62 (41.94%), Postives = 40/62 (64.52%), Query Frame = 1 

Query: 15  SRYYIHVVNGL-SKLGLLVHCQSKDDDLGYHRLLNHGDDYQWNFKVNFWGTTLYWCKLET 74
           S+  + + N L ++L LL HC+SKDDDLG +R L  G+ + ++F   F+G TLY+C    
Sbjct: 46  SKRTVEINNDLGNQLTLLYHCKSKDDDLG-NRTLQPGESWSFSFGRQFFGRTLYFCSFSW 105

Query: 75  PH 76
           P+
Sbjct: 106 PN 106

[Close]
BLAST of CmoCh00G001220 vs. TAIR10
Match: AT3G26880.1 (AT3G26880.1 Plant self-incompatibility protein S1 family)

HSP 1 Score: 52.4 bits (124), Expect = 5.7e-07
Identity = 23/50 (46.00%), Postives = 34/50 (68.00%), Query Frame = 1 

Query: 22 VNGLSKLGLLVHCQSKDDDLGYHRLLNHGDDYQWNFKVNFWGTTLYWCKL 72
          +N  +K  L VHC+SK++D+G  + L  G+   ++FK NFWGTT +WC L
Sbjct: 32 LNPKNKNILKVHCKSKNNDIGV-KYLKIGEVMSFSFKTNFWGTTEFWCNL 80

[Close]
BLAST of CmoCh00G001220 vs. TAIR10
Match: AT5G06020.1 (AT5G06020.1 Plant self-incompatibility protein S1 family)

HSP 1 Score: 51.6 bits (122), Expect = 9.7e-07
Identity = 21/38 (55.26%), Postives = 28/38 (73.68%), Query Frame = 1 

Query: 32 VHCQSKDDDLGYHRLLNHGDDYQWNFKVNFWGTTLYWC 70
          +HC+SKDDDLG+H +   G+ Y W F VNF  +TLY+C
Sbjct: 61 IHCKSKDDDLGFH-IHKEGELYGWKFHVNFQNSTLYFC 97

[Close]
BLAST of CmoCh00G001220 vs. TAIR10
Match: AT5G04350.1 (AT5G04350.1 Plant self-incompatibility protein S1 family)

HSP 1 Score: 51.6 bits (122), Expect = 9.7e-07
Identity = 25/47 (53.19%), Postives = 33/47 (70.21%), Query Frame = 1 

Query: 26 SKLGLLVHCQSKDDDLGYHRLLNHGDDYQWNFKVNFWGTTLYWCKLE 73
          SKL L VHC+SKDDDLG H +L  G DY++ F  N W TT + C+++
Sbjct: 38 SKL-LKVHCRSKDDDLGEH-ILKIGQDYEFTFGDNIWQTTSFSCQMD 82

[Close]
BLAST of CmoCh00G001220 vs. TAIR10
Match: AT4G16295.1 (AT4G16295.1 S-protein homologue 1)

HSP 1 Score: 49.3 bits (116), Expect = 4.8e-06
Identity = 24/68 (35.29%), Postives = 38/68 (55.88%), Query Frame = 1 

Query: 12  PGPSRYYIHVVNGLSK-LGLLVHCQSKDDDLGYHRLLNHGDDYQWNFKVNFWGTTLYWCK 71
           P  S + + VVNGL+    L +HC+SK+DDLG    L   + + WNF  N   +T +WC 
Sbjct: 36  PKISEWQVTVVNGLTTGETLFIHCKSKEDDLGEIN-LKFRNRFSWNFGENMLHSTFFWCY 95

Query: 72  LETPHAYV 79
           +   + ++
Sbjct: 96  MNKDNGHM 102

[Close]
BLAST of CmoCh00G001220 vs. NCBI nr
Match: gi|449443935|ref|XP_004139731.1| (PREDICTED: uncharacterized protein LOC101207655 [Cucumis sativus])

HSP 1 Score: 129.0 bits (323), Expect = 1.4e-26
Identity = 52/76 (68.42%), Postives = 63/76 (82.89%), Query Frame = 1 

Query: 2  AQVPRVALPPPGPSRYYIHVVNGLSKLGLLVHCQSKDDDLGYHRLLNHGDDYQWNFKVNF 61
          +QVP  + PPP  SRY++HVVNGLS   L VHC+SKDDDLGYH ++NHGDD+QWNF+ NF
Sbjct: 6  SQVPNWSEPPPTASRYFVHVVNGLSSHSLDVHCKSKDDDLGYHHMVNHGDDFQWNFEENF 65

Query: 62 WGTTLYWCKLETPHAY 78
          WGTTL+WC+LE P AY
Sbjct: 66 WGTTLFWCRLENPEAY 81

[Close]
BLAST of CmoCh00G001220 vs. NCBI nr
Match: gi|659124349|ref|XP_008462111.1| (PREDICTED: pumilio homolog 15-like [Cucumis melo])

HSP 1 Score: 128.6 bits (322), Expect = 1.8e-26
Identity = 62/125 (49.60%), Postives = 82/125 (65.60%), Query Frame = 1 

Query: 3   QVPRVALPPPGPSRYYIHVVNGLSKLGLLVHCQSKDDDLGYHRLLNHGDDYQWNFKVNFW 62
           QVP  + PPP  SRY++HVVNGLS   L VHCQSKDDDLGYH L+NHGDD+QWNF+ NFW
Sbjct: 7   QVPNWSEPPPQASRYFVHVVNGLSYHNLDVHCQSKDDDLGYHCLVNHGDDFQWNFRENFW 66

Query: 63  GTTLYWCKLETPHAYVPRVALPPPGPSRYYIHVVNGLSKLGLLVHCQSKDDDLGYHRLLN 122
           GTTL+WC+LE   AYV   +  P   + +  +     ++LG  +   +KDD +    L  
Sbjct: 67  GTTLFWCRLEKLDAYVAFESFWPESRNLWLRYRCG--NQLGTCI-WTAKDDGIYLRNLST 126

Query: 123 HGDDY 128
           + D++
Sbjct: 127 NVDEF 128

[Close]
BLAST of CmoCh00G001220 vs. NCBI nr
Match: gi|659116532|ref|XP_008458117.1| (PREDICTED: uncharacterized protein LOC103497646 [Cucumis melo])

HSP 1 Score: 128.6 bits (322), Expect = 1.8e-26
Identity = 56/90 (62.22%), Postives = 66/90 (73.33%), Query Frame = 1 

Query: 2  AQVPRVALPPPGPSRYYIHVVNGLSKLGLLVHCQSKDDDLGYHRLLNHGDDYQWNFKVNF 61
          A+V R+ LPPP  +RYYIHV+NGLS   L+VHCQSKDDDLGYH L N GDDYQWNFK NF
Sbjct: 7  ARVLRMTLPPPSVTRYYIHVMNGLSNADLIVHCQSKDDDLGYHHLANRGDDYQWNFKENF 66

Query: 62 WGTTLYWCKLETPHAYVPRVALPPPGPSRY 92
          W TTL+WCKLE  + +V   +  P   S +
Sbjct: 67 WQTTLFWCKLEKQNVHVSFESFWPESKSTW 96

[Close]
BLAST of CmoCh00G001220 vs. NCBI nr
Match: gi|659124355|ref|XP_008462115.1| (PREDICTED: uncharacterized protein LOC103500543 [Cucumis melo])

HSP 1 Score: 123.2 bits (308), Expect = 7.4e-25
Identity = 51/76 (67.11%), Postives = 61/76 (80.26%), Query Frame = 1 

Query: 3  QVPRVALPPPGPSRYYIHVVNGLSKLGLLVHCQSKDDDLGYHRLLNHGDDYQWNFKVNFW 62
          +V +   PPP PSRY++HVVNGLS   L VHCQSK+DDLGYH L+N GD+YQWNF+ N W
Sbjct: 7  EVSKWLKPPPKPSRYFVHVVNGLSYQSLDVHCQSKNDDLGYHHLVNRGDEYQWNFEENLW 66

Query: 63 GTTLYWCKLETPHAYV 79
          GTTL+WC+LE P AYV
Sbjct: 67 GTTLFWCRLEKPDAYV 82

[Close]
BLAST of CmoCh00G001220 vs. NCBI nr
Match: gi|659124347|ref|XP_008462110.1| (PREDICTED: uncharacterized protein LOC103500539 [Cucumis melo])

HSP 1 Score: 121.3 bits (303), Expect = 2.8e-24
Identity = 54/89 (60.67%), Postives = 66/89 (74.16%), Query Frame = 1 

Query: 3   QVPRVALPPPGPSRYYIHVVNGLSKLGLLVHCQSKDDDLGYHRLLNHGDDYQWNFKVNFW 62
           QV R   PPP PSRY+++VVNGLS   L VHCQSKDDDLGYH L+NHGD +QWNF+ NF+
Sbjct: 18  QVSRWKKPPPQPSRYFVNVVNGLSYHSLDVHCQSKDDDLGYHHLVNHGDYFQWNFEENFF 77

Query: 63  GTTLYWCKLETPHAYVPRVALPPPGPSRY 92
           GTTL+WC+LE   AYV   +  P   +R+
Sbjct: 78  GTTLFWCRLEKSDAYVAFESFWPESTNRW 106

The following BLAST results are available for this feature:
BLAST of CmoCh00G001220 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh00G001220 vs. TrEMBL
Match NameE-valueIdentityDescription
B9RWP2_RICCO1.3e-1536.25Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1023130 PE=4 SV=1[more]
B9RTI3_RICCO8.6e-1254.39RNA binding protein, putative OS=Ricinus communis GN=RCOM_0910760 PE=4 SV=1[more]
A0A0A0K6N8_CUCSA2.8e-1055.74Uncharacterized protein OS=Cucumis sativus GN=Csa_7G336430 PE=4 SV=1[more]
B9S574_RICCO1.8e-0946.67Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1722050 PE=4 SV=1[more]
M5VJF6_PRUPE2.3e-0950.88Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa024656mg PE=4 SV=1[more]
BLAST of CmoCh00G001220 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G16195.13.3e-0741.94 Plant self-incompatibility protein S1 family[more]
AT3G26880.15.7e-0746.00 Plant self-incompatibility protein S1 family[more]
AT5G06020.19.7e-0755.26 Plant self-incompatibility protein S1 family[more]
AT5G04350.19.7e-0753.19 Plant self-incompatibility protein S1 family[more]
AT4G16295.14.8e-0635.29 S-protein homologue 1[more]
BLAST of CmoCh00G001220 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449443935|ref|XP_004139731.1|1.4e-2668.42PREDICTED: uncharacterized protein LOC101207655 [Cucumis sativus][more]
gi|659124349|ref|XP_008462111.1|1.8e-2649.60PREDICTED: pumilio homolog 15-like [Cucumis melo][more]
gi|659116532|ref|XP_008458117.1|1.8e-2662.22PREDICTED: uncharacterized protein LOC103497646 [Cucumis melo][more]
gi|659124355|ref|XP_008462115.1|7.4e-2567.11PREDICTED: uncharacterized protein LOC103500543 [Cucumis melo][more]
gi|659124347|ref|XP_008462110.1|2.8e-2460.67PREDICTED: uncharacterized protein LOC103500539 [Cucumis melo][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR010264Self-incomp_S1
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh00G001220.1CmoCh00G001220.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR010264Plant self-incompatibility S1PFAMPF05938Self-incomp_S1coord: 19..74
score: 1.0E-14coord: 93..148
score: 1.0E-14coord: 167..222
score: 1.0E-14coord: 241..295
score: 1.8
NoneNo IPR availablePANTHERPTHR31232FAMILY NOT NAMEDcoord: 16..72
score: 3.3

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh00G001220CmaCh00G002030Cucurbita maxima (Rimu)cmacmoB001
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh00G001220Cucurbita maxima (Rimu)cmacmoB000