CmoCh00G001180 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh00G001180
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Cyclopropane fatty acid synthase
Location	Cmo_Chr00 : 20746090 .. 20746940 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGTCTCCTCCACTGTTTACCGCAACTATTGCATCTGCAAAGTATTTCTTTCAGCATACTTTAAGAAAGAACACCATTGCACAAGCTCGTAAAAATATTTCTCGTCATTACGACCTAGTAGTATATAGATGCATCAGTTTCATAGTCTTTTTCTTTTCGTCTTTAGATTGATGATATCTCTCCAATATTATTCGTATTCAATCAAAAGATAACTAGAATAATGTTGAAAAATAACAAACAAAAGAAATGTAAAATAACTCAAATAAGTATGAGATTGTAGTGTTTGAGTAAAGTAGTGTTACATAAACAAATTGAGACCAGAAGTGATCCAAAGATATAAAATTATGGCTAAAAAAAGTTTACAAGAATTTATAGCTCCTACCCATATTACTAATAAAGTGAACATTTCTTTTCGTTTGGAAATTTAATCATAGGAACTTCAAAACTAAACGTGTTGAATTATAGATTTCGAATCTTGAGGTGAAGAATTATAGAACAAATCATCATATCAACCTTTCAGTATAATTACTAATATACCCTCAATATCCAATAACATTTCTAATTATTCTATCTTAATTCCATTTGTATCAAATTATTCTCTCCTATTGAATAATTGATTTTGTTGTATAGAGCAATGAACTTTTCTCTCTCTTCTTGGATGATACAATGATGTATTCATGTGCCATCATTAAGGTTCCTGTAACCAACTTTTATTTATTAAAAATTTGATAATCTATATGATGATTTGCATTATTTTCTTAACAAAGAGTTGGAAGATGAAGATTTGAGGATTGCACAATTGAGGAAAATCTCTGTTCTTATTGAGAAGGTGATTATTATATTATGA

mRNA sequence

ATGGAGGTCTCCTCCACTGTTTACCGCAACTATTGCATCTGCAAACATACTTTAAGAAAGAACACCATTGCACAAGCTCGTAAAAATATTTCTCGTCATTACGACCTAGTAAGCAATGAACTTTTCTCTCTCTTCTTGGATGATACAATGATGTATTCATGTGCCATCATTAAGTTGGAAGATGAAGATTTGAGGATTGCACAATTGAGGAAAATCTCTGTTCTTATTGAGAAGGTGATTATTATATTATGA

Coding sequence (CDS)

ATGGAGGTCTCCTCCACTGTTTACCGCAACTATTGCATCTGCAAACATACTTTAAGAAAGAACACCATTGCACAAGCTCGTAAAAATATTTCTCGTCATTACGACCTAGTAAGCAATGAACTTTTCTCTCTCTTCTTGGATGATACAATGATGTATTCATGTGCCATCATTAAGTTGGAAGATGAAGATTTGAGGATTGCACAATTGAGGAAAATCTCTGTTCTTATTGAGAAGGTGATTATTATATTATGA

Homology

[Close]

BLAST of CmoCh00G001180 vs. TrEMBL
Match: A0A0A0LIH3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G172480 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 2.2e-18
Identity = 57/78 (73.08%), Postives = 62/78 (79.49%), Query Frame = 1


Query: 4   SSTVYRNYCICKHTLRKNTIAQARKNISRHYDLVSNELFSLFLDDTMMYSCAIIKLEDED 63
           +S  Y  Y   +HTLR+NTI QAR NISRHYDL SNELFSLFLDDTM YSCAI K EDED
Sbjct: 148 ASIAYAKYFF-QHTLRQNTITQARTNISRHYDL-SNELFSLFLDDTMTYSCAIFKREDED 207

Query: 64  LRIAQLRKISVLIEKVII 82
           LR+AQLRKIS LI+K  I
Sbjct: 208 LRVAQLRKISHLIKKARI 223

[Close]

BLAST of CmoCh00G001180 vs. TrEMBL
Match: A0A0J8CS40_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_3g048520 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 2.5e-17
Identity = 48/72 (66.67%), Postives = 62/72 (86.11%), Query Frame = 1


Query: 7   VYRNYCICKHTLRKNTIAQARKNISRHYDLVSNELFSLFLDDTMMYSCAIIKLEDEDLRI 66
           +YRN+C      R+NT+ QAR+NISRHYD+ SNE+FSLF+D+TMMYSCAI K E+EDL++
Sbjct: 131 IYRNFC------RRNTLTQARRNISRHYDM-SNEMFSLFMDETMMYSCAIHKSENEDLKV 190

Query: 67  AQLRKISVLIEK 79
           AQ+RKIS+LIEK
Sbjct: 191 AQMRKISLLIEK 195

[Close]

BLAST of CmoCh00G001180 vs. TrEMBL
Match: A0A068TTK5_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00026372001 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 7.2e-17
Identity = 50/67 (74.63%), Postives = 58/67 (86.57%), Query Frame = 1


Query: 15  KHTLRKNTIAQARKNISRHYDLVSNELFSLFLDDTMMYSCAIIKLEDEDLRIAQLRKISV 74
           +H  R+NT+ QAR+NISRHYDL SNELFSLFLD+TM YSCAI K EDEDL+IAQLRKIS+
Sbjct: 548 QHVSRQNTLTQARRNISRHYDL-SNELFSLFLDETMTYSCAIFKSEDEDLKIAQLRKISL 607

Query: 75  LIEKVII 82
           LIE+  I
Sbjct: 608 LIERARI 613

[Close]

BLAST of CmoCh00G001180 vs. TrEMBL
Match: A0A022QV53_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a001185mg PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 9.4e-17
Identity = 46/63 (73.02%), Postives = 57/63 (90.48%), Query Frame = 1


Query: 16  HTLRKNTIAQARKNISRHYDLVSNELFSLFLDDTMMYSCAIIKLEDEDLRIAQLRKISVL 75
           H  R+N++ QAR+NISRHYDL SNELF+LFLD+TMMYSCAI K +DED++IAQLRK+S+L
Sbjct: 567 HVSRQNSLTQARRNISRHYDL-SNELFALFLDETMMYSCAIFKTQDEDMKIAQLRKVSLL 626

Query: 76  IEK 79
           IEK
Sbjct: 627 IEK 628

[Close]

BLAST of CmoCh00G001180 vs. TrEMBL
Match: F6H8S1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0049g01650 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 9.4e-17
Identity = 49/67 (73.13%), Postives = 58/67 (86.57%), Query Frame = 1


Query: 15  KHTLRKNTIAQARKNISRHYDLVSNELFSLFLDDTMMYSCAIIKLEDEDLRIAQLRKISV 74
           +H  R+NT+ QAR+NISRHYDL SNELFSLFLD+TM YSCA+ K E EDL++AQLRKIS+
Sbjct: 572 QHVSRQNTLTQARRNISRHYDL-SNELFSLFLDETMTYSCAVFKTEGEDLKVAQLRKISL 631

Query: 75  LIEKVII 82
           LIEKV I
Sbjct: 632 LIEKVRI 637

[Close]

BLAST of CmoCh00G001180 vs. TAIR10
Match: AT3G23510.1 (AT3G23510.1 Cyclopropane-fatty-acyl-phospholipid synthase)

HSP 1 Score: 89.0 bits (219), Expect = 1.5e-18
Identity = 47/67 (70.15%), Postives = 55/67 (82.09%), Query Frame = 1


Query: 15  KHTLRKNTIAQARKNISRHYDLVSNELFSLFLDDTMMYSCAIIKLEDEDLRIAQLRKISV 74
           KH  R+NT+ QAR+NISRHYDL SNELF LFLDDTM YS A+ K +DEDLR AQ+RKIS+
Sbjct: 561 KHVSRQNTLTQARRNISRHYDL-SNELFGLFLDDTMTYSSAVFKSDDEDLRTAQMRKISL 620

Query: 75  LIEKVII 82
           LI+K  I
Sbjct: 621 LIDKARI 626

[Close]

BLAST of CmoCh00G001180 vs. TAIR10
Match: AT3G23530.1 (AT3G23530.1 Cyclopropane-fatty-acyl-phospholipid synthase)

HSP 1 Score: 87.4 bits (215), Expect = 4.4e-18
Identity = 46/67 (68.66%), Postives = 54/67 (80.60%), Query Frame = 1


Query: 15  KHTLRKNTIAQARKNISRHYDLVSNELFSLFLDDTMMYSCAIIKLEDEDLRIAQLRKISV 74
           KH  R+NT+ QAR+NISRHYDL SNELF  FLDDTM YS A+ K +DEDLR AQ+RKIS+
Sbjct: 561 KHVSRQNTLTQARRNISRHYDL-SNELFGFFLDDTMTYSSAVFKSDDEDLRTAQMRKISL 620

Query: 75  LIEKVII 82
           LI+K  I
Sbjct: 621 LIDKARI 626

[Close]

BLAST of CmoCh00G001180 vs. TAIR10
Match: AT3G23470.1 (AT3G23470.1 Cyclopropane-fatty-acyl-phospholipid synthase)

HSP 1 Score: 87.0 bits (214), Expect = 5.8e-18
Identity = 47/67 (70.15%), Postives = 54/67 (80.60%), Query Frame = 1


Query: 15  KHTLRKNTIAQARKNISRHYDLVSNELFSLFLDDTMMYSCAIIKLEDEDLRIAQLRKISV 74
           KH L++NT+ QARKNIS HYDL SNE F LF+DDTMMYS AI K E+ED R AQ+RKIS+
Sbjct: 153 KHVLKQNTLTQARKNISSHYDL-SNEFFGLFMDDTMMYSSAIFKSENEDPRTAQMRKISL 212

Query: 75  LIEKVII 82
           LIEK  I
Sbjct: 213 LIEKARI 218

[Close]

BLAST of CmoCh00G001180 vs. TAIR10
Match: AT3G23460.1 (AT3G23460.1 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein)

HSP 1 Score: 84.3 bits (207), Expect = 3.8e-17
Identity = 42/64 (65.62%), Postives = 53/64 (82.81%), Query Frame = 1


Query: 15  KHTLRKNTIAQARKNISRHYDLVSNELFSLFLDDTMMYSCAIIKLEDEDLRIAQLRKISV 74
           KH  R+N + QAR+NISRHYDL SNELF++FLDDTM YS  + K +DE+L+IAQ+RKI +
Sbjct: 139 KHLYRQNNLTQARRNISRHYDL-SNELFTIFLDDTMSYSSGVFKSDDEELKIAQMRKIYL 198

Query: 75  LIEK 79
           LIEK
Sbjct: 199 LIEK 201

[Close]

BLAST of CmoCh00G001180 vs. NCBI nr
Match: gi|659121588|ref|XP_008460733.1| (PREDICTED: uncharacterized protein LOC103499495, partial [Cucumis melo])

HSP 1 Score: 102.8 bits (255), Expect = 2.9e-19
Identity = 57/78 (73.08%), Postives = 64/78 (82.05%), Query Frame = 1


Query: 4   SSTVYRNYCICKHTLRKNTIAQARKNISRHYDLVSNELFSLFLDDTMMYSCAIIKLEDED 63
           +S  Y  Y   +HTLR+NTI QAR+NIS+HYDL SNELFSLFLDDTM YSCAI K EDED
Sbjct: 657 ASIAYAKYFF-RHTLRQNTITQARRNISQHYDL-SNELFSLFLDDTMTYSCAIFKTEDED 716

Query: 64  LRIAQLRKISVLIEKVII 82
           LR+AQLRKIS+LIEK  I
Sbjct: 717 LRVAQLRKISLLIEKARI 732

[Close]

BLAST of CmoCh00G001180 vs. NCBI nr
Match: gi|659133660|ref|XP_008466845.1| (PREDICTED: probable (S)-tetrahydroprotoberberine N-methyltransferase 2, partial [Cucumis melo])

HSP 1 Score: 101.7 bits (252), Expect = 6.4e-19
Identity = 57/78 (73.08%), Postives = 64/78 (82.05%), Query Frame = 1


Query: 4   SSTVYRNYCICKHTLRKNTIAQARKNISRHYDLVSNELFSLFLDDTMMYSCAIIKLEDED 63
           +S  Y  Y   +HTLR+NTI QAR+NIS+HYDL SNELFSLFLDDTM YSCAI K EDED
Sbjct: 29  ASIAYAKYFF-QHTLRQNTIIQARRNISQHYDL-SNELFSLFLDDTMTYSCAIFKREDED 88

Query: 64  LRIAQLRKISVLIEKVII 82
           LR+AQLRKIS+LIEK  I
Sbjct: 89  LRVAQLRKISLLIEKAKI 104

[Close]

BLAST of CmoCh00G001180 vs. NCBI nr
Match: gi|778668696|ref|XP_011649140.1| (PREDICTED: uncharacterized protein LOC101213610 [Cucumis sativus])

HSP 1 Score: 99.4 bits (246), Expect = 3.2e-18
Identity = 57/78 (73.08%), Postives = 62/78 (79.49%), Query Frame = 1


Query: 4   SSTVYRNYCICKHTLRKNTIAQARKNISRHYDLVSNELFSLFLDDTMMYSCAIIKLEDED 63
           +S  Y  Y   +HTLR+NTI QAR NISRHYDL SNELFSLFLDDTM YSCAI K EDED
Sbjct: 554 ASIAYAKYFF-QHTLRQNTITQARTNISRHYDL-SNELFSLFLDDTMTYSCAIFKREDED 613

Query: 64  LRIAQLRKISVLIEKVII 82
           LR+AQLRKIS LI+K  I
Sbjct: 614 LRVAQLRKISHLIKKARI 629

[Close]

BLAST of CmoCh00G001180 vs. NCBI nr
Match: gi|700206459|gb|KGN61578.1| (hypothetical protein Csa_2G172480 [Cucumis sativus])

HSP 1 Score: 99.4 bits (246), Expect = 3.2e-18
Identity = 57/78 (73.08%), Postives = 62/78 (79.49%), Query Frame = 1


Query: 4   SSTVYRNYCICKHTLRKNTIAQARKNISRHYDLVSNELFSLFLDDTMMYSCAIIKLEDED 63
           +S  Y  Y   +HTLR+NTI QAR NISRHYDL SNELFSLFLDDTM YSCAI K EDED
Sbjct: 148 ASIAYAKYFF-QHTLRQNTITQARTNISRHYDL-SNELFSLFLDDTMTYSCAIFKREDED 207

Query: 64  LRIAQLRKISVLIEKVII 82
           LR+AQLRKIS LI+K  I
Sbjct: 208 LRVAQLRKISHLIKKARI 223

[Close]

BLAST of CmoCh00G001180 vs. NCBI nr
Match: gi|778668693|ref|XP_011649139.1| (PREDICTED: uncharacterized protein LOC105434591 [Cucumis sativus])

HSP 1 Score: 99.4 bits (246), Expect = 3.2e-18
Identity = 57/78 (73.08%), Postives = 62/78 (79.49%), Query Frame = 1


Query: 4   SSTVYRNYCICKHTLRKNTIAQARKNISRHYDLVSNELFSLFLDDTMMYSCAIIKLEDED 63
           +S  Y  Y   +HTLR+NTI QAR NISRHYDL SNELFSLFLDDTM YSCAI K EDED
Sbjct: 555 ASIAYAKYFF-QHTLRQNTITQARTNISRHYDL-SNELFSLFLDDTMTYSCAIFKREDED 614

Query: 64  LRIAQLRKISVLIEKVII 82
           LR+AQLRKIS LI+K  I
Sbjct: 615 LRVAQLRKISHLIKKARI 630

The following BLAST results are available for this feature:

BLAST of CmoCh00G001180 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh00G001180 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LIH3_CUCSA	2.2e-18	73.08	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G172480 PE=4 SV=1	[more]
A0A0J8CS40_BETVU	2.5e-17	66.67	Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_3g048520 PE=4 S...	[more]
A0A068TTK5_COFCA	7.2e-17	74.63	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00026372001 PE=4 SV=1	[more]
A0A022QV53_ERYGU	9.4e-17	73.02	Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a001185mg PE=4 SV=1	[more]
F6H8S1_VITVI	9.4e-17	73.13	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0049g01650 PE=4 SV=...	[more]

BLAST of CmoCh00G001180 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G23510.1	1.5e-18	70.15	Cyclopropane-fatty-acyl-phospholipid synthase	[more]
AT3G23530.1	4.4e-18	68.66	Cyclopropane-fatty-acyl-phospholipid synthase	[more]
AT3G23470.1	5.8e-18	70.15	Cyclopropane-fatty-acyl-phospholipid synthase	[more]
AT3G23460.1	3.8e-17	65.63	S-adenosyl-L-methionine-dependent methyltransferases superfamily pro...	[more]

BLAST of CmoCh00G001180 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659121588\|ref\|XP_008460733.1\|	2.9e-19	73.08	PREDICTED: uncharacterized protein LOC103499495, partial [Cucumis melo]	[more]
gi\|659133660\|ref\|XP_008466845.1\|	6.4e-19	73.08	PREDICTED: probable (S)-tetrahydroprotoberberine N-methyltransferase 2, partial ...	[more]
gi\|778668696\|ref\|XP_011649140.1\|	3.2e-18	73.08	PREDICTED: uncharacterized protein LOC101213610 [Cucumis sativus]	[more]
gi\|700206459\|gb\|KGN61578.1\|	3.2e-18	73.08	hypothetical protein Csa_2G172480 [Cucumis sativus]	[more]
gi\|778668693\|ref\|XP_011649139.1\|	3.2e-18	73.08	PREDICTED: uncharacterized protein LOC105434591 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008610	lipid biosynthetic process
biological_process	GO:0055114	oxidation-reduction process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0016491	oxidoreductase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh00G001180.1	CmoCh00G001180.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR10108	METHYLTRANSFERASE	coord: 18..78 score: 3.8
None	No IPR available	PANTHER	PTHR10108:SF916	SUBFAMILY NOT NAMED	coord: 18..78 score: 3.8

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh00G001180	Cucurbita maxima (Rimu)	cmacmoB000
CmoCh00G001180	Cucurbita maxima (Rimu)	cmacmoB001