CmoCh00G001170 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh00G001170
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	(Polygalacturonase) (3.2.1.15)
Location	Cmo_Chr00 : 20740940 .. 20742934 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

CCTGATGAAAAGACCGATGCCTCGCCTGTCCTTCAAACGGCATGGGCTAAGGCCTGTGACTCATCTGAACCAGCCACTATTTATGTTCCCGAGGGTATATTCTTCGTTCGAAGTGTGAGATTTAATGGGCCTTGTAAGAACAATGCTATTACTGTTCTCATTGATGGAACTCTTGTGGCTTCCTCGGACATTCACGTTTTAGCTAATTCTAGTTCTTGGATTTTGTTTAATCACATAAATGGGCTTTCCATTACTGGCGGTATTATTGATGGGCAAGGAACTCCCTTATGGAATTGTAAACACTCAGGGAAGAGTTGCCCCATTGGAGTCAGGGTATGGAGAATTTGAGTTGGCTCCATGTAAAAAAATTTGAAAATTTTTCTTTTAACTCAAAGTGGAAAGAGAATGACTGGATTAATTAAAATATTATTTTAAATTTTTACTAATTCTGGCTTTTGATTGTTTTGAATGGATAGAGTCTTCAAATAAATGATGGAAAGAATGTGAACATCAATGGATTATCTTCAATTAACAGCCAATTGTTCGGCATTGGAATGAATTGATGCCAAAACGTGCATTTGACAAGAGTGAATGTCTTGGCTGCAGGCGATAGTCCAAACACTGATGGCATCCATTGCAACAATCATCAGATGTGACCATCCTCAACTCGAACATTGGAAATGGTGACGACTGCATCTCCATCGGTCCAGGGACATCCAACATGTGGATCGAAACTATTACATGTGGGCCTGGACATGGAATCAGGTAACTAGAGATAGATTAGGATGAACATGTTTAGAAATGTTTTTTAAAGGGTTTAAATAAATTTGTCACATTAATTTTTAAAAGATAATCTAAACGTTAAATTAACTTTGAATAATTAAAATATATTCTAAAGTTATTTTGAACGTGAGAAAAAATATTTAAATTATTTTACAATTATTTTGGATAAAAATATATATATAATATATTAGGTTAGAGTGAGGAAATTAAACCTCATGAAACATTTGGTATTTTGTTGAATGTGTTTGTAGCATTGGGAGCTTAGGGATAGGGGCTGAGGAGGATGGAGTGCATAACGTTACCGTGAAATCATCTACATTCACGGGGACCCAGAATGGAGTAAGGATTAAGTCTTGGGGAAGACCAAGCAATGGATTCGCTACAAACGTTCATTTTCAACACATTACTATGGATAACGTGAAAAACCCAATCATAATTGATCAAAATTATTGTCCACATCTCAAAGACTGTCCTGGTCAGGTATACTTCCTCATTAATCTCATAGATGTTAATTATTTTCTAATTATATTTTATCTTAAATTTAATAGAACTTAAATTTTAAATTTTATAAATAATTGATTTATTTTATCTTTAATTGTTTGAAATTTGGTTGTGTTTAAGATGGGCGCCAAATTATTAGTATTATTTTTTGGTACATTAAATTACTTTTACAGGTAATAAATTAGGGATGCTATTACTCTCGATGTCTTAAAATGGTATGAAGCTTTTATGATTTTATTTTTTAATTTATCCAAAATATCTAATATCAATGGAGATAACTGCTTAACTTATATAACTATCAAGAAAATCTAAGAATATCCTCGATTTATATCTTATTTGTTGTATATATTTATATCTTATTATTGAATTCCTAATTTATATTTGGTTTTATAATATAGTTTTATAATATAACTTAGGGTTTCATGGAATTAATTTTTTTTTTTTTGTGGAGAATAACTCAGTAATACAAGTTTACATGGTGAATGCTTTTATAGATATCCTTGTTTATCCGTTTTCATAGTATATTTTGATTGTTCTTTATTTTAATAGGATTCTGGAGTTAAAGTTAGCGAAGTAACATACGAAGACATCAAGGGAACTTCGGCCACTGAAATAGCAATCAAGTTTGAATGTAGTCCAACAAATCATTGCACTGGATTAAGCTTGATAGACATAAACCTAACTTACGAGAATCACATCGCTAAAGCTTCA

mRNA sequence

CCTGATGAAAAGACCGATGCCTCGCCTGTCCTTCAAACGGCATGGGCTAAGGCCTGTGACTCATCTGAACCAGCCACTATTTATGTTCCCGAGGGTATATTCTTCGTTCGAAGTGTGAGATTTAATGGGCCTTGTAAGAACAATGCTATTACTGTTCTCATTGATGGAACTCTTGTGGCTTCCTCGGACATTCACGTTTTAGCTAATTCTAGTTCTTGGATTTTGTTTAATCACATAAATGGGCTTTCCATTACTGGCGGTATTATTGATGGGCAAGGAACTCCCTTATGGAATTGTAAACACTCAGGGAAGAGTTGCCCCATTGGAGTCAGGCCAATTGTTCGGCATTGGAATGAATTGATGCCAAAACGTGCATTTGACAAGAATGTGACCATCCTCAACTCGAACATTGGAAATGGTGACGACTGCATCTCCATCGGTCCAGGGACATCCAACATGTGGATCGAAACTATTACATGGGCTGAGGAGGATGGAGTGCATAACGTTACCGTGAAATCATCTACATTCACGGGGACCCAGAATGGAGTAAGGATTAAGTCTTGGGGAAGACCAAGCAATGGATTCGCTACAAACGTTCATTTTCAACACATTACTATGGATAACGTGAAAAACCCAATCATAATTGATCAAAATTATTGTCCACATCTCAAAGACTGTCCTGGTCAGGGAACTTCGGCCACTGAAATAGCAATCAAGTTTGAATGTAGTCCAACAAATCATTGCACTGGATTAAGCTTGATAGACATAAACCTAACTTACGAGAATCACATCGCTAAAGCTTCA

Coding sequence (CDS)

CCTGATGAAAAGACCGATGCCTCGCCTGTCCTTCAAACGGCATGGGCTAAGGCCTGTGACTCATCTGAACCAGCCACTATTTATGTTCCCGAGGGTATATTCTTCGTTCGAAGTGTGAGATTTAATGGGCCTTGTAAGAACAATGCTATTACTGTTCTCATTGATGGAACTCTTGTGGCTTCCTCGGACATTCACGTTTTAGCTAATTCTAGTTCTTGGATTTTGTTTAATCACATAAATGGGCTTTCCATTACTGGCGGTATTATTGATGGGCAAGGAACTCCCTTATGGAATTGTAAACACTCAGGGAAGAGTTGCCCCATTGGAGTCAGGCCAATTGTTCGGCATTGGAATGAATTGATGCCAAAACGTGCATTTGACAAGAATGTGACCATCCTCAACTCGAACATTGGAAATGGTGACGACTGCATCTCCATCGGTCCAGGGACATCCAACATGTGGATCGAAACTATTACATGGGCTGAGGAGGATGGAGTGCATAACGTTACCGTGAAATCATCTACATTCACGGGGACCCAGAATGGAGTAAGGATTAAGTCTTGGGGAAGACCAAGCAATGGATTCGCTACAAACGTTCATTTTCAACACATTACTATGGATAACGTGAAAAACCCAATCATAATTGATCAAAATTATTGTCCACATCTCAAAGACTGTCCTGGTCAGGGAACTTCGGCCACTGAAATAGCAATCAAGTTTGAATGTAGTCCAACAAATCATTGCACTGGATTAAGCTTGATAGACATAAACCTAACTTACGAGAATCACATCGCTAAAGCTTCA

Homology

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BLAST of CmoCh00G001170 vs. Swiss-Prot
Match: PGLR_PRUPE (Polygalacturonase OS=Prunus persica PE=2 SV=1)

HSP 1 Score: 231.5 bits (589), Expect = 1.1e-59
Identity = 137/342 (40.06%), Postives = 177/342 (51.75%), Query Frame = 1


Query: 2   DEKTDASPVLQTAWAKACDSSEPATIYVPEGIFFVRSVRFNGPCKNNAITVLIDGTLVAS 61
           D KTD++    +AWAKAC S  P  IYVP G FF+R V F+GPCKNNAIT  I GTLVA 
Sbjct: 38  DGKTDSTKAFLSAWAKACASMNPGVIYVPAGTFFLRDVVFSGPCKNNAITFRIAGTLVAP 97

Query: 62  SDIHVLANSSSWILFNHINGLSITGGIIDGQGTPLWNCKH-SGKSCPIGVRPI-VRHWNE 121
           SD  V+ N+++WI F+H+NG++I+GGI+DGQGT LW CK   G+SCP G   +     N 
Sbjct: 98  SDYRVIGNAANWIFFHHVNGVTISGGILDGQGTALWACKACHGESCPSGATTLGFSDSNN 157

Query: 122 LMPKRAFDKNVTILNSNIGNGDDCISIGPGTSNMWIETITWAEEDGVH-----NVTVKSS 181
           ++       N  + +  I +  +    G   S       T    DG+H      VT+ +S
Sbjct: 158 IVVSGLASLNSQMFHIVINDFQNVQMQGVRVSRSGNSPNT----DGIHVQMSSGVTILNS 217

Query: 182 TFT----------GT-------------------------------------------QN 241
                        GT                                           QN
Sbjct: 218 KIATGDDCVSIGPGTSNLWIEGVACGPGHGISIGSLGKEQEEAGVQNVTVKTVTFSGTQN 277

Query: 242 GVRIKSWGRPSNGFATNVHFQHITMDNVKNPIIIDQNYCPHLKDCPGQ------------ 269
           G+RIKSWGRPS GFA N+ FQH TM NV+NPI+IDQ+YCP  K CPGQ            
Sbjct: 278 GLRIKSWGRPSTGFARNILFQHATMVNVENPIVIDQHYCPDNKGCPGQVSGVQISDVTYE 337

[Close]

BLAST of CmoCh00G001170 vs. Swiss-Prot
Match: PGLR6_ARATH (Probable polygalacturonase At2g43860 OS=Arabidopsis thaliana GN=At2g43860 PE=2 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 1.2e-34
Identity = 82/169 (48.52%), Postives = 101/169 (59.76%), Query Frame = 1


Query: 129 NVTILNSNIGNGDDCISIGPGTSNMWIETITWA--------------EEDGVHNVTVKSS 188
           +V I NS IG GDDCISIGPG++N++I+TI                 EE GV NVTV + 
Sbjct: 213 SVHITNSRIGTGDDCISIGPGSTNVFIQTIRCGPGHGISIGSLGRAEEEQGVDNVTVSNV 272

Query: 189 TFTGTQNGVRIKSWGRPSNGFATNVHFQHITMDNVKNPIIIDQNYCPHLKDCPGQ----- 248
            F GT NGVRIK+WG+ SN FA N+ FQHI M  VKNPIIIDQ+YC H K CP Q     
Sbjct: 273 DFMGTNNGVRIKTWGKDSNSFARNIVFQHINMKMVKNPIIIDQHYCLH-KPCPKQESGVK 332

Query: 249 ----------GTSATEIAIKFECSPTNHCTGLSLIDINLTYENHIAKAS 269
                     GTS TE+A+  +CS    CTG+ + D+NL   +  A+AS
Sbjct: 333 VSNVRYEDIHGTSNTEVAVLLDCSKEKPCTGIVMDDVNLVSVHRPAQAS 380

[Close]

BLAST of CmoCh00G001170 vs. Swiss-Prot
Match: PGLR_SOLLC (Polygalacturonase-2 OS=Solanum lycopersicum GN=PG2 PE=1 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 1.8e-33
Identity = 110/337 (32.64%), Postives = 156/337 (46.29%), Query Frame = 1


Query: 2   DEKTDASPVLQTAWAKACDSSEPATIYVPEGI-FFVRSVRFNGPCKNNAITVLIDGTLVA 61
           D KT  +   + AW +AC S  P    VP+   + ++ + F+GPC+++ I+V I G+L A
Sbjct: 86  DGKTYDNIAFEQAWNEACSSRTPVQFVVPKNKNYLLKQITFSGPCRSS-ISVKIFGSLEA 145

Query: 62  SSDIHVLANSSSWILFNHINGLSITGG-IIDGQGTPLW--NCKHSGKSCPIGVRPI-VRH 121
           SS I    +   WI F+ +  L + GG  I+G G   W  +CK + KS P    P  +  
Sbjct: 146 SSKISDYKDRRLWIAFDSVQNLVVGGGGTINGNGQVWWPSSCKIN-KSLPCRDAPTALTF 205

Query: 122 WN-------ELMPKRA------FDKNVTILNSN--------------------------- 181
           WN        L  K A      F+    ++ SN                           
Sbjct: 206 WNCKNLKVNNLKSKNAQQIHIKFESCTNVVASNLMINASAKSPNTDGVHVSNTQYIQISD 265

Query: 182 --IGNGDDCISIGPGTSNMWIETITWAEEDG--------------VHNVTVKSSTFTGTQ 241
             IG GDDCISI  G+ N+    IT     G              V NVTV  +   G +
Sbjct: 266 TIIGTGDDCISIVSGSQNVQATNITCGPGHGISIGSLGSGNSEAYVSNVTVNEAKIIGAE 325

Query: 242 NGVRIKSWGRPSNGFATNVHFQHITMDNVKNPIIIDQNYCPHLKDCPGQ----------- 263
           NGVRIK+W +  +G A+N+ F ++ M +VK PIIIDQNYC  ++ C  Q           
Sbjct: 326 NGVRIKTW-QGGSGQASNIKFLNVEMQDVKYPIIIDQNYCDRVEPCIQQFSAVQVKNVVY 385

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BLAST of CmoCh00G001170 vs. Swiss-Prot
Match: PGLR_OENOR (Exopolygalacturonase (Fragment) OS=Oenothera organensis PE=2 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 5.1e-25
Identity = 65/161 (40.37%), Postives = 89/161 (55.28%), Query Frame = 1


Query: 130 VTILNSNIGNGDDCISIGPGTSNMWIETIT--------------WAEEDGVHNVTVKSST 189
           V I+N+ I  GDDCIS+G G+ N+ I  IT              +  E+ V  + VK+ T
Sbjct: 168 VNIINTEIKTGDDCISLGDGSKNINITNITCGPGHGISVGSLGRYKNEESVVGIYVKNCT 227

Query: 190 FTGTQNGVRIKSWGRPSNGFATNVHFQHITMDNVKNPIIIDQNYCPHLKDCPGQ------ 249
            TG+QNGVRIK+W +   G A+ +HFQ ITM++V  PI+IDQ YCP+   C  +      
Sbjct: 228 ITGSQNGVRIKTWPKSEPGEASEMHFQDITMNSVGTPILIDQGYCPY-NQCTAEVPSSVK 287

Query: 250 ----------GTSATEIAIKFECSPTNHCTGLSLIDINLTY 261
                     GTS T+ A+K  CS +  C G+ L DI+LTY
Sbjct: 288 LSKISFKNIKGTSTTKEAVKLVCSKSFPCNGVELADIDLTY 327

[Close]

BLAST of CmoCh00G001170 vs. Swiss-Prot
Match: PGLR2_PLAAC (Exopolygalacturonase (Fragment) OS=Platanus acerifolia GN=plaa2 PE=1 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 5.1e-25
Identity = 62/162 (38.27%), Postives = 89/162 (54.94%), Query Frame = 1


Query: 128 KNVTILNSNIGNGDDCISIGPGTSNMWIETIT--------------WAEEDGVHNVTVKS 187
           K VTI N+ I  GDDCISIGPG+ N+ I  +               +  E  V  +TVK 
Sbjct: 187 KGVTITNTKIATGDDCISIGPGSQNVTITQVNCGPGHGISIGSLGRYNNEKEVRGITVKG 246

Query: 188 STFTGTQNGVRIKSWGRPSNGFATNVHFQHITMDNVKNPIIIDQNYCPH---LKDCPG-- 247
            TF+GT NGVR+K+W     G AT++ FQ +TM+NV+NP+I+DQ YCP+    +  P   
Sbjct: 247 CTFSGTMNGVRVKTWPNSPPGAATDLTFQDLTMNNVQNPVILDQEYCPYGQCSRQAPSRI 306

Query: 248 ----------QGTSATEIAIKFECSPTNHCTGLSLIDINLTY 261
                     +GTS  ++A+   CS    C+ + + +INL+Y
Sbjct: 307 KLSNINFNNIRGTSTGKVAVVIACSHGMPCSNMKIGEINLSY 348

[Close]

BLAST of CmoCh00G001170 vs. TrEMBL
Match: M1A9G5_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG403006909 PE=3 SV=1)

HSP 1 Score: 285.0 bits (728), Expect = 9.2e-74
Identity = 145/298 (48.66%), Postives = 187/298 (62.75%), Query Frame = 1


Query: 2   DEKTDASPVLQTAWAKACDSSEPATIYVPEGIFFVRSVRFNGP-CKNNAITVLIDGTLVA 61
           D +TD+S    +AW+ AC S+  +TIYVP G + +R+  FNG  C++ AIT+ IDGTL+A
Sbjct: 32  DGETDSSEAFLSAWSAACASTRSSTIYVPRGNYLIRNAYFNGKTCQSKAITIRIDGTLLA 91

Query: 62  SSDIHVLANSSSWILFNHINGLSITGGIIDGQGTPLWNCKHSG-KSCPIGVRPIVRHWNE 121
            SD +V+ N  +WI F  +NG+SI GG  DGQG  LW CK S  K CP G          
Sbjct: 92  PSDYNVIGNDENWIKFEKVNGISIYGGTFDGQGAALWACKKSNNKKCPDGTT-------- 151

Query: 122 LMPKRAFDKNVTILNSNIGNGDDCISIGPGTSNMWIETIT-------------WAEED-G 181
                     V+I+NS IG GDDC+SIGPGTSN+WIE I              W E++ G
Sbjct: 152 -------SSGVSIVNSQIGTGDDCVSIGPGTSNLWIEGIACGPGHGISIGSLGWKEQELG 211

Query: 182 VHNVTVKSSTFTGTQNGVRIKSWGRPSNGFATNVHFQHITMDNVKNPIIIDQNYCPHLKD 241
           V NVT+K+ TF+GT NGVR+K+W RPSNGF  NV FQHI M NVKNPIIIDQNYCP+ + 
Sbjct: 212 VQNVTIKTVTFSGTTNGVRVKTWARPSNGFVRNVLFQHIVMVNVKNPIIIDQNYCPNHES 271

Query: 242 CPGQ---------------GTSATEIAIKFECSPTNHCTGLSLIDINLTYENHIAKAS 269
           CP +               GTSAT++A+K  CS +N C+G++L D+NL+Y +H  KAS
Sbjct: 272 CPHKGSGVKISDVTYQDIHGTSATKVAVKLNCSKSNPCSGITLEDVNLSYNDHPTKAS 314

[Close]

BLAST of CmoCh00G001170 vs. TrEMBL
Match: B9SSW9_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1267500 PE=3 SV=1)

HSP 1 Score: 264.6 bits (675), Expect = 1.3e-67
Identity = 134/284 (47.18%), Postives = 173/284 (60.92%), Query Frame = 1


Query: 1   PDEKTDASPVLQTAWAKACDSSEPATIYVPEGIFFVRSVRFNGPCKNNAITVLIDG-TLV 60
           PD +TD +    TAW +AC S+ PA I VP G F V  + F GPCKNNA+ + +DG TLV
Sbjct: 33  PDGRTDCTKAFLTAWTQACASTRPAIISVPPGRFLVSKLLFQGPCKNNAVLLSVDGSTLV 92

Query: 61  ASSDIHVLANSSSWILFNHINGLSITGGIIDGQGTPLWNCKHSGKSCPIGVRPIVRHWNE 120
           A SD     N+ +W++F +++G++I+GGI+DGQG  LW+CK SGK CP G   +      
Sbjct: 93  APSDYWATGNAQNWLIFEYVDGVTISGGILDGQGMSLWSCKASGKKCPTGATSL------ 152

Query: 121 LMPKRAFDKNVTILNSNIGNGDDCISIGPGTSNMWIETITWAEEDGVHNVTVKSSTFTGT 180
                              N ++   IG G+    ++      E GV NVTVK++ FTGT
Sbjct: 153 ----------------GFSNSNNIAIIGIGSLGKDLQ------EAGVQNVTVKTAKFTGT 212

Query: 181 QNGVRIKSWGRPSNGFATNVHFQHITMDNVKNPIIIDQNYCPHLKDCPGQ---------- 240
           QNG+RIKSWGRPSNGFA N+ FQH TM +VKNPI+IDQNYCPH K+CPGQ          
Sbjct: 213 QNGLRIKSWGRPSNGFARNILFQHATMIDVKNPIVIDQNYCPHNKNCPGQVSGVQISGVT 272

Query: 241 -----GTSATEIAIKFECSPTNHCTGLSLIDINLTYENHIAKAS 269
                GTSATE+A++F+CS    CTG+ + DI LTY N  A AS
Sbjct: 273 YQDIHGTSATEVAVRFDCSKKTPCTGIKMEDIRLTYRNQPADAS 288

[Close]

BLAST of CmoCh00G001170 vs. TrEMBL
Match: S8DSB2_9LAMI (Uncharacterized protein (Fragment) OS=Genlisea aurea GN=M569_08754 PE=3 SV=1)

HSP 1 Score: 263.1 bits (671), Expect = 3.8e-67
Identity = 138/339 (40.71%), Postives = 189/339 (55.75%), Query Frame = 1


Query: 1   PDEKTDASPVLQTAWAKACDSSEPATIYVPEGIFFVRS-VRFNGPCKNNAITVLIDGTLV 60
           PD   D+   L +AWA AC+S +P+ IYVP+G F + + ++F GPC+N+A  + IDG LV
Sbjct: 24  PDGYADSGDALLSAWADACNSRDPSVIYVPKGRFLINTNLQFRGPCENDATVIRIDGVLV 83

Query: 61  ASSDIHVLANSSSWILFNHINGLSITGGIIDGQGTPLWNCKHSGKSCPIG---------- 120
           A SD   + N+++W+LFN ++G+SI GG +DG+G  LW CK SG  CP+G          
Sbjct: 84  APSDYEAIGNANNWLLFNDVSGVSILGGTLDGRGHALWACKKSGGDCPVGATTIGIWNSQ 143

Query: 121 --------------------------VRPIVRHWNELMPKR-----AFDKNVTILNSNIG 180
                                     ++ +    +E  P        F   VTIL+S IG
Sbjct: 144 NVEVVGLETLNSQMFHIVVNGCRDVKLQQVTVLASEDSPNTDGIHVQFSNRVTILDSVIG 203

Query: 181 NGDDCISIGPGTSNMWIETITWA--------------EEDGVHNVTVKSSTFTGTQNGVR 240
           +GDDCISIGPGTS++WIE +                 +E+GV NV VK+  F GT+NGVR
Sbjct: 204 SGDDCISIGPGTSDLWIENVVCGPGHGISIGSLGKKYDEEGVENVVVKNVRFKGTENGVR 263

Query: 241 IKSWGRPSNGFATNVHFQHITMDNVKNPIIIDQNYCPHLKDCPG---------------Q 269
           IK+W RPS GF   V FQH  M +V+NPI+IDQNYCP+  +CP                Q
Sbjct: 264 IKTWARPSKGFVRGVVFQHAVMHDVRNPIVIDQNYCPYHYNCPQEESGVRISDVLYEDIQ 323

[Close]

BLAST of CmoCh00G001170 vs. TrEMBL
Match: A0A068UIM6_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00026864001 PE=3 SV=1)

HSP 1 Score: 259.2 bits (661), Expect = 5.4e-66
Identity = 139/318 (43.71%), Postives = 185/318 (58.18%), Query Frame = 1


Query: 1   PDEKTDASPVLQTAWAKACDSSEPATIYVPEGIFFVRSVRFNG-PCKNNAITVLIDGTLV 60
           PD KTD++    +AWA AC S + ATIYVP G + + +  F G  CKNNAI + IDGTLV
Sbjct: 36  PDGKTDSTKAFLSAWAAACASVKSATIYVPRGRYLLGAASFWGNTCKNNAIKISIDGTLV 95

Query: 61  ASSDIHVLANSSSWILFNHINGLSITGGIIDGQGTPLWNCKHSGKSCPIGVRPIVRH-WN 120
           A S+   +  + +W+ F  +NG++I+GG +DGQG  LWNCK S  +CP G   +  +  N
Sbjct: 96  APSNYRTIGYAGNWLKFERVNGVTISGGTLDGQGISLWNCKASKSNCPGGATTLAFYNSN 155

Query: 121 ELMPKRAFDKN-------------------VTILNSNIGNGDDCISIGPGTSNMWIETIT 180
            ++  +    N                   VTIL SNI  GDDCISIGPGTSN+WIE ++
Sbjct: 156 NIVISKLTSLNSQMFHIPNTDGIHISGSSGVTILGSNIATGDDCISIGPGTSNLWIENVS 215

Query: 181 -------------W-AEEDGVHNVTVKSSTFTGTQNGVRIKSWGRPSNGFATNVHFQHIT 240
                        W  +E GV NVTVK+ TF  TQNG+RIK+W RPSNGF   + FQ+  
Sbjct: 216 CGPGHGISIGSLGWDMQEPGVQNVTVKTVTFRDTQNGLRIKTWARPSNGFVKRILFQNAV 275

Query: 241 MDNVKNPIIIDQNYCPHLKDCPGQ---------------GTSATEIAIKFECSPTNHCTG 269
           M NV++PIIIDQ+YCP   +CP Q               GTS++++AI   CS  + C+G
Sbjct: 276 MLNVRSPIIIDQSYCPSKNNCPNQGSGVKISDVTYQQIHGTSSSQVAIAIGCSKDSPCSG 335

[Close]

BLAST of CmoCh00G001170 vs. TrEMBL
Match: B9SSX4_RICCO (Polygalacturonase, putative OS=Ricinus communis GN=RCOM_1267850 PE=3 SV=1)

HSP 1 Score: 254.2 bits (648), Expect = 1.7e-64
Identity = 132/283 (46.64%), Postives = 171/283 (60.42%), Query Frame = 1


Query: 1   PDEKTDASPVLQTAWAKACDSSEPATIYVPEGIFFVRSVRFNGPCKNNAITVLIDGTLVA 60
           PD  TD++     AW +AC S EP TIYVP G F +R+V F G C+NNAI + IDG LVA
Sbjct: 39  PDGTTDSTEAFIAAWKQACSSLEPTTIYVPLGRFLLRNVAFRGKCRNNAIQIRIDGMLVA 98

Query: 61  SSDIHVLANSSSWILFNHINGLSITGGIIDGQGTPLWNCKHSGKSCPIGVRPIVRHWNEL 120
            SD  V+ +S +W+LF +++G+S  GG++D QGT LWNCK + K+CP G   + R  N  
Sbjct: 99  PSDYRVIGHSENWLLFENVDGVSFFGGVLDAQGTGLWNCKATAKNCPSGATSL-RFTNA- 158

Query: 121 MPKRAFDKNVTILNSNIGNGDDCISIGPGTSNMWIETITWAEEDGVHNVTVKSSTFTGTQ 180
                   N+ I   +  N     S+G               E GV NVTVK+ TFTGT+
Sbjct: 159 -------NNIEIKGLSSLNSQFIGSLGKE-----------FHEPGVQNVTVKTVTFTGTE 218

Query: 181 NGVRIKSWGRPSNGFATNVHFQHITMDNVKNPIIIDQNYCPHLKDCPGQ----------- 240
           NGVRIK+W RPS GFA N+ FQ+  M NV NPI+IDQNYCPH ++CP Q           
Sbjct: 219 NGVRIKAWARPSTGFARNISFQNAIMKNVHNPIVIDQNYCPHKRNCPHQGSGIKISNVCY 278

Query: 241 ----GTSATEIAIKFECSPTNHCTGLSLIDINLTYENHIAKAS 269
               GTSATE+A++F+CS  N CTG+ L ++ LTY+N  A AS
Sbjct: 279 QNIYGTSATEVAMRFDCSKKNPCTGIRLQNVVLTYKNQPADAS 301

[Close]

BLAST of CmoCh00G001170 vs. TAIR10
Match: AT3G59850.1 (AT3G59850.1 Pectin lyase-like superfamily protein)

HSP 1 Score: 173.7 bits (439), Expect = 1.5e-43
Identity = 83/162 (51.23%), Postives = 104/162 (64.20%), Query Frame = 1


Query: 130 VTILNSNIGNGDDCISIGPGTSNMWIETITWAE--------------EDGVHNVTVKSST 189
           V+ILNS I  GDDC+SIGPGT+ +WIE +                  E GV N+TVK++T
Sbjct: 203 VSILNSKISTGDDCVSIGPGTNGLWIENVACGPGHGISIGSLGKESVEVGVQNITVKTAT 262

Query: 190 FTGTQNGVRIKSWGRPSNGFATNVHFQHITMDNVKNPIIIDQNYCPHLKDCPGQ------ 249
           FTGT+NGVRIKSW RPSNGFA N+ FQH  M+NV+NPI+IDQNYCP  ++CP Q      
Sbjct: 263 FTGTENGVRIKSWARPSNGFAKNIRFQHCVMNNVQNPIVIDQNYCPGNENCPNQVSGIKI 322

Query: 250 ---------GTSATEIAIKFECSPTNHCTGLSLIDINLTYEN 263
                    GTSATE+ +K +CS    CTG+ + D+ LTY N
Sbjct: 323 SDVMFFDIHGTSATEVGVKLDCSSKKPCTGIRIQDVKLTYRN 364

[Close]

BLAST of CmoCh00G001170 vs. TAIR10
Match: AT2G43870.1 (AT2G43870.1 Pectin lyase-like superfamily protein)

HSP 1 Score: 168.7 bits (426), Expect = 4.9e-42
Identity = 85/169 (50.30%), Postives = 105/169 (62.13%), Query Frame = 1


Query: 129 NVTILNSNIGNGDDCISIGPGTSNMWIETITWAE--------------EDGVHNVTVKSS 188
           +V+I N+ I  GDDC+SIGPGT+ +WIE +                  E GV NVTVK+ 
Sbjct: 200 SVSIFNTKISTGDDCVSIGPGTNGLWIENVACGPGHGISIGSLGKDSVESGVQNVTVKTV 259

Query: 189 TFTGTQNGVRIKSWGRPSNGFATNVHFQHITMDNVKNPIIIDQNYCPHLKDCPGQ----- 248
           TFTGT NGVRIKSW RPS+GFA N+ FQH  M+NV+NPIIIDQNYCP   DCP Q     
Sbjct: 260 TFTGTDNGVRIKSWARPSSGFAKNIRFQHCVMNNVENPIIIDQNYCPD-HDCPRQVSGIK 319

Query: 249 ----------GTSATEIAIKFECSPTNHCTGLSLIDINLTYENHIAKAS 269
                     GTSATE+ +K +CS    CTG+ L D+ LTY+N  A ++
Sbjct: 320 ISDVLFVDIHGTSATEVGVKLDCSSKKPCTGIRLEDVKLTYQNKPAASA 367

[Close]

BLAST of CmoCh00G001170 vs. TAIR10
Match: AT2G43880.1 (AT2G43880.1 Pectin lyase-like superfamily protein)

HSP 1 Score: 158.7 bits (400), Expect = 5.1e-39
Identity = 81/160 (50.62%), Postives = 99/160 (61.88%), Query Frame = 1


Query: 130 VTILNSNIGNGDDCISIGPGTSNMWIETIT--------------WAEEDGVHNVTVKSST 189
           VTI    I  GDDCI++  G+ N+WIE +               +A E+GV NVTV SS 
Sbjct: 209 VTISGGTIATGDDCIALSQGSRNIWIERVNCGPGHGISIGSLGDYANEEGVQNVTVTSSV 268

Query: 190 FTGTQNGVRIKSWGRPSNGFATNVHFQHITMDNVKNPIIIDQNYCPHLKDCPGQ------ 249
           FT TQNGVRIK+W RPS GF  NV F+++ M+NV+NP+IIDQNYCP+ K CP Q      
Sbjct: 269 FTKTQNGVRIKTWARPSRGFVNNVVFRNLIMNNVENPVIIDQNYCPNGKGCPRQSSGVKI 328

Query: 250 ---------GTSATEIAIKFECSPTNHCTGLSLIDINLTY 261
                    GTS T IA+K +CS +NHCTGL L DI LTY
Sbjct: 329 SGVTFANIKGTSTTPIAMKLDCSGSNHCTGLRLQDIKLTY 368

[Close]

BLAST of CmoCh00G001170 vs. TAIR10
Match: AT1G05650.1 (AT1G05650.1 Pectin lyase-like superfamily protein)

HSP 1 Score: 152.9 bits (385), Expect = 2.8e-37
Identity = 81/164 (49.39%), Postives = 96/164 (58.54%), Query Frame = 1


Query: 126 FDKNVTILNSNIGNGDDCISIGPGTSNMWIETITWA--------------EEDGVHNVTV 185
           F   VT+  S +  GDDC++IG GT N  I  +                  EDGV NVTV
Sbjct: 202 FSTGVTLTGSTVQTGDDCVAIGQGTRNFLISKLACGPGHGVSIGSLAKQLNEDGVENVTV 261

Query: 186 KSSTFTGTQNGVRIKSWGRPSNGFATNVHFQHITMDNVKNPIIIDQNYCPHLKDCPG--- 245
            SS FTG+QNGVRIKSW RPS GF  NV FQ++ M NV+NPIIIDQNYCP  + CP    
Sbjct: 262 SSSVFTGSQNGVRIKSWARPSTGFVRNVFFQNLIMRNVQNPIIIDQNYCPSNQGCPTEHS 321

Query: 246 ------------QGTSATEIAIKFECSPTNHCTGLSLIDINLTY 261
                       QGTSAT+ A+K  CS +N CTG++L DI LTY
Sbjct: 322 GVKITQVTYKNIQGTSATQEAMKLVCSKSNPCTGITLQDIKLTY 365

[Close]

BLAST of CmoCh00G001170 vs. TAIR10
Match: AT1G05660.1 (AT1G05660.1 Pectin lyase-like superfamily protein)

HSP 1 Score: 152.5 bits (384), Expect = 3.6e-37
Identity = 80/160 (50.00%), Postives = 96/160 (60.00%), Query Frame = 1


Query: 130 VTILNSNIGNGDDCISIGPGTSNMWIETITWA--------------EEDGVHNVTVKSST 189
           VT   S +  GDDC++IGPGT N+ I  +                 +EDGV NVTV SS 
Sbjct: 206 VTFTGSTVQTGDDCVAIGPGTRNLLITKLACGPGHGVSIGSLAKELKEDGVENVTVSSSV 265

Query: 190 FTGTQNGVRIKSWGRPSNGFATNVHFQHITMDNVKNPIIIDQNYCPHLKDCPG------- 249
           FTG+QNGVRIKSW RPSNGF   V FQ + M NV+NPIIIDQNYCP  + CP        
Sbjct: 266 FTGSQNGVRIKSWARPSNGFVRTVFFQDLVMKNVENPIIIDQNYCPTHEGCPNEYSGVKI 325

Query: 250 --------QGTSATEIAIKFECSPTNHCTGLSLIDINLTY 261
                   QGTSAT+ A+K  CS ++ CTG++L DI LTY
Sbjct: 326 SQVTYKNIQGTSATQEAMKLVCSKSSPCTGITLQDIKLTY 365

[Close]

BLAST of CmoCh00G001170 vs. NCBI nr
Match: gi|223531439|gb|EEF33272.1| (conserved hypothetical protein [Ricinus communis])

HSP 1 Score: 264.6 bits (675), Expect = 1.9e-67
Identity = 134/284 (47.18%), Postives = 173/284 (60.92%), Query Frame = 1


Query: 1   PDEKTDASPVLQTAWAKACDSSEPATIYVPEGIFFVRSVRFNGPCKNNAITVLIDG-TLV 60
           PD +TD +    TAW +AC S+ PA I VP G F V  + F GPCKNNA+ + +DG TLV
Sbjct: 33  PDGRTDCTKAFLTAWTQACASTRPAIISVPPGRFLVSKLLFQGPCKNNAVLLSVDGSTLV 92

Query: 61  ASSDIHVLANSSSWILFNHINGLSITGGIIDGQGTPLWNCKHSGKSCPIGVRPIVRHWNE 120
           A SD     N+ +W++F +++G++I+GGI+DGQG  LW+CK SGK CP G   +      
Sbjct: 93  APSDYWATGNAQNWLIFEYVDGVTISGGILDGQGMSLWSCKASGKKCPTGATSL------ 152

Query: 121 LMPKRAFDKNVTILNSNIGNGDDCISIGPGTSNMWIETITWAEEDGVHNVTVKSSTFTGT 180
                              N ++   IG G+    ++      E GV NVTVK++ FTGT
Sbjct: 153 ----------------GFSNSNNIAIIGIGSLGKDLQ------EAGVQNVTVKTAKFTGT 212

Query: 181 QNGVRIKSWGRPSNGFATNVHFQHITMDNVKNPIIIDQNYCPHLKDCPGQ---------- 240
           QNG+RIKSWGRPSNGFA N+ FQH TM +VKNPI+IDQNYCPH K+CPGQ          
Sbjct: 213 QNGLRIKSWGRPSNGFARNILFQHATMIDVKNPIVIDQNYCPHNKNCPGQVSGVQISGVT 272

Query: 241 -----GTSATEIAIKFECSPTNHCTGLSLIDINLTYENHIAKAS 269
                GTSATE+A++F+CS    CTG+ + DI LTY N  A AS
Sbjct: 273 YQDIHGTSATEVAVRFDCSKKTPCTGIKMEDIRLTYRNQPADAS 288

[Close]

BLAST of CmoCh00G001170 vs. NCBI nr
Match: gi|527197560|gb|EPS66023.1| (hypothetical protein M569_08754, partial [Genlisea aurea])

HSP 1 Score: 263.1 bits (671), Expect = 5.4e-67
Identity = 138/339 (40.71%), Postives = 189/339 (55.75%), Query Frame = 1


Query: 1   PDEKTDASPVLQTAWAKACDSSEPATIYVPEGIFFVRS-VRFNGPCKNNAITVLIDGTLV 60
           PD   D+   L +AWA AC+S +P+ IYVP+G F + + ++F GPC+N+A  + IDG LV
Sbjct: 24  PDGYADSGDALLSAWADACNSRDPSVIYVPKGRFLINTNLQFRGPCENDATVIRIDGVLV 83

Query: 61  ASSDIHVLANSSSWILFNHINGLSITGGIIDGQGTPLWNCKHSGKSCPIG---------- 120
           A SD   + N+++W+LFN ++G+SI GG +DG+G  LW CK SG  CP+G          
Sbjct: 84  APSDYEAIGNANNWLLFNDVSGVSILGGTLDGRGHALWACKKSGGDCPVGATTIGIWNSQ 143

Query: 121 --------------------------VRPIVRHWNELMPKR-----AFDKNVTILNSNIG 180
                                     ++ +    +E  P        F   VTIL+S IG
Sbjct: 144 NVEVVGLETLNSQMFHIVVNGCRDVKLQQVTVLASEDSPNTDGIHVQFSNRVTILDSVIG 203

Query: 181 NGDDCISIGPGTSNMWIETITWA--------------EEDGVHNVTVKSSTFTGTQNGVR 240
           +GDDCISIGPGTS++WIE +                 +E+GV NV VK+  F GT+NGVR
Sbjct: 204 SGDDCISIGPGTSDLWIENVVCGPGHGISIGSLGKKYDEEGVENVVVKNVRFKGTENGVR 263

Query: 241 IKSWGRPSNGFATNVHFQHITMDNVKNPIIIDQNYCPHLKDCPG---------------Q 269
           IK+W RPS GF   V FQH  M +V+NPI+IDQNYCP+  +CP                Q
Sbjct: 264 IKTWARPSKGFVRGVVFQHAVMHDVRNPIVIDQNYCPYHYNCPQEESGVRISDVLYEDIQ 323

[Close]

BLAST of CmoCh00G001170 vs. NCBI nr
Match: gi|661888394|emb|CDP08127.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 259.2 bits (661), Expect = 7.8e-66
Identity = 139/318 (43.71%), Postives = 185/318 (58.18%), Query Frame = 1


Query: 1   PDEKTDASPVLQTAWAKACDSSEPATIYVPEGIFFVRSVRFNG-PCKNNAITVLIDGTLV 60
           PD KTD++    +AWA AC S + ATIYVP G + + +  F G  CKNNAI + IDGTLV
Sbjct: 36  PDGKTDSTKAFLSAWAAACASVKSATIYVPRGRYLLGAASFWGNTCKNNAIKISIDGTLV 95

Query: 61  ASSDIHVLANSSSWILFNHINGLSITGGIIDGQGTPLWNCKHSGKSCPIGVRPIVRH-WN 120
           A S+   +  + +W+ F  +NG++I+GG +DGQG  LWNCK S  +CP G   +  +  N
Sbjct: 96  APSNYRTIGYAGNWLKFERVNGVTISGGTLDGQGISLWNCKASKSNCPGGATTLAFYNSN 155

Query: 121 ELMPKRAFDKN-------------------VTILNSNIGNGDDCISIGPGTSNMWIETIT 180
            ++  +    N                   VTIL SNI  GDDCISIGPGTSN+WIE ++
Sbjct: 156 NIVISKLTSLNSQMFHIPNTDGIHISGSSGVTILGSNIATGDDCISIGPGTSNLWIENVS 215

Query: 181 -------------W-AEEDGVHNVTVKSSTFTGTQNGVRIKSWGRPSNGFATNVHFQHIT 240
                        W  +E GV NVTVK+ TF  TQNG+RIK+W RPSNGF   + FQ+  
Sbjct: 216 CGPGHGISIGSLGWDMQEPGVQNVTVKTVTFRDTQNGLRIKTWARPSNGFVKRILFQNAV 275

Query: 241 MDNVKNPIIIDQNYCPHLKDCPGQ---------------GTSATEIAIKFECSPTNHCTG 269
           M NV++PIIIDQ+YCP   +CP Q               GTS++++AI   CS  + C+G
Sbjct: 276 MLNVRSPIIIDQSYCPSKNNCPNQGSGVKISDVTYQQIHGTSSSQVAIAIGCSKDSPCSG 335

[Close]

BLAST of CmoCh00G001170 vs. NCBI nr
Match: gi|223531444|gb|EEF33277.1| (Polygalacturonase precursor, putative [Ricinus communis])

HSP 1 Score: 254.2 bits (648), Expect = 2.5e-64
Identity = 132/283 (46.64%), Postives = 171/283 (60.42%), Query Frame = 1


Query: 1   PDEKTDASPVLQTAWAKACDSSEPATIYVPEGIFFVRSVRFNGPCKNNAITVLIDGTLVA 60
           PD  TD++     AW +AC S EP TIYVP G F +R+V F G C+NNAI + IDG LVA
Sbjct: 39  PDGTTDSTEAFIAAWKQACSSLEPTTIYVPLGRFLLRNVAFRGKCRNNAIQIRIDGMLVA 98

Query: 61  SSDIHVLANSSSWILFNHINGLSITGGIIDGQGTPLWNCKHSGKSCPIGVRPIVRHWNEL 120
            SD  V+ +S +W+LF +++G+S  GG++D QGT LWNCK + K+CP G   + R  N  
Sbjct: 99  PSDYRVIGHSENWLLFENVDGVSFFGGVLDAQGTGLWNCKATAKNCPSGATSL-RFTNA- 158

Query: 121 MPKRAFDKNVTILNSNIGNGDDCISIGPGTSNMWIETITWAEEDGVHNVTVKSSTFTGTQ 180
                   N+ I   +  N     S+G               E GV NVTVK+ TFTGT+
Sbjct: 159 -------NNIEIKGLSSLNSQFIGSLGKE-----------FHEPGVQNVTVKTVTFTGTE 218

Query: 181 NGVRIKSWGRPSNGFATNVHFQHITMDNVKNPIIIDQNYCPHLKDCPGQ----------- 240
           NGVRIK+W RPS GFA N+ FQ+  M NV NPI+IDQNYCPH ++CP Q           
Sbjct: 219 NGVRIKAWARPSTGFARNISFQNAIMKNVHNPIVIDQNYCPHKRNCPHQGSGIKISNVCY 278

Query: 241 ----GTSATEIAIKFECSPTNHCTGLSLIDINLTYENHIAKAS 269
               GTSATE+A++F+CS  N CTG+ L ++ LTY+N  A AS
Sbjct: 279 QNIYGTSATEVAMRFDCSKKNPCTGIRLQNVVLTYKNQPADAS 301

[Close]

BLAST of CmoCh00G001170 vs. NCBI nr
Match: gi|672111710|ref|XP_008802072.1| (PREDICTED: polygalacturonase-like [Phoenix dactylifera])

HSP 1 Score: 253.8 bits (647), Expect = 3.3e-64
Identity = 130/336 (38.69%), Postives = 189/336 (56.25%), Query Frame = 1


Query: 2   DEKTDASPVLQTAWAKACDSSEPATIYVPEGIFFVRSVRFNGPCKNNAITVLIDGTLVAS 61
           D +TD++    +AW+ AC++++PAT+YVP G FF+     +GPC N AI + I GTL+A 
Sbjct: 35  DGRTDSAKAFLSAWSAACEANKPATVYVPPGKFFLSKADVSGPCNNKAIKIFIHGTLIAP 94

Query: 62  SDIHVLANSSSWILFNHINGLSITGGIIDGQGTPLWNCKHSGKSCPIGVRPI-------- 121
           S     ++++ WI F ++ GLSI GG +DGQG  LW CK +G+SCP+G   +        
Sbjct: 95  SSYS--SSNTLWIRFKYVEGLSIYGGTLDGQGQALWACKQAGRSCPVGATSLTISQGKNV 154

Query: 122 ------------------------VRHWNELMPKRAFDKN---------VTILNSNIGNG 181
                                   V       P+ + + +         VTI NS +  G
Sbjct: 155 LISGMKIQNSQNFQMSIYGSTGVTVERATITAPEESPNTDGIHVQMSSFVTIRNSTMRTG 214

Query: 182 DDCISIGPGTSNMWIETITWA--------------EEDGVHNVTVKSSTFTGTQNGVRIK 241
           DDCIS+G G++N+WI+ I                 +++GV N+TV+S+TFTGTQNG+R+K
Sbjct: 215 DDCISMGAGSANVWIQKINCGPGHGISIGSLGLSGDDEGVQNITVRSATFTGTQNGLRVK 274

Query: 242 SWGRPSNGFATNVHFQHITMDNVKNPIIIDQNYCPHLKDCPG---------------QGT 268
           +W +P  GF   V F++  M +V+NPI+IDQNYCP  K+CPG               QG+
Sbjct: 275 TWAKPYKGFVKGVTFENAIMKDVQNPIVIDQNYCPSKKNCPGQSSGIKISEVKFKNVQGS 334

The following BLAST results are available for this feature:

BLAST of CmoCh00G001170 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PGLR_PRUPE	1.1e-59	40.06	Polygalacturonase OS=Prunus persica PE=2 SV=1	[more]
PGLR6_ARATH	1.2e-34	48.52	Probable polygalacturonase At2g43860 OS=Arabidopsis thaliana GN=At2g43860 PE=2 S...	[more]
PGLR_SOLLC	1.8e-33	32.64	Polygalacturonase-2 OS=Solanum lycopersicum GN=PG2 PE=1 SV=1	[more]
PGLR_OENOR	5.1e-25	40.37	Exopolygalacturonase (Fragment) OS=Oenothera organensis PE=2 SV=1	[more]
PGLR2_PLAAC	5.1e-25	38.27	Exopolygalacturonase (Fragment) OS=Platanus acerifolia GN=plaa2 PE=1 SV=1	[more]

BLAST of CmoCh00G001170 vs. TrEMBL


Match Name	E-value	Identity	Description
M1A9G5_SOLTU	9.2e-74	48.66	Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG403006909 PE=3 SV=1	[more]
B9SSW9_RICCO	1.3e-67	47.18	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1267500 PE=3 SV=1	[more]
S8DSB2_9LAMI	3.8e-67	40.71	Uncharacterized protein (Fragment) OS=Genlisea aurea GN=M569_08754 PE=3 SV=1	[more]
A0A068UIM6_COFCA	5.4e-66	43.71	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00026864001 PE=3 SV=1	[more]
B9SSX4_RICCO	1.7e-64	46.64	Polygalacturonase, putative OS=Ricinus communis GN=RCOM_1267850 PE=3 SV=1	[more]

BLAST of CmoCh00G001170 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G59850.1	1.5e-43	51.23	Pectin lyase-like superfamily protein	[more]
AT2G43870.1	4.9e-42	50.30	Pectin lyase-like superfamily protein	[more]
AT2G43880.1	5.1e-39	50.63	Pectin lyase-like superfamily protein	[more]
AT1G05650.1	2.8e-37	49.39	Pectin lyase-like superfamily protein	[more]
AT1G05660.1	3.6e-37	50.00	Pectin lyase-like superfamily protein	[more]

BLAST of CmoCh00G001170 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|223531439\|gb\|EEF33272.1\|	1.9e-67	47.18	conserved hypothetical protein [Ricinus communis]	[more]
gi\|527197560\|gb\|EPS66023.1\|	5.4e-67	40.71	hypothetical protein M569_08754, partial [Genlisea aurea]	[more]
gi\|661888394\|emb\|CDP08127.1\|	7.8e-66	43.71	unnamed protein product [Coffea canephora]	[more]
gi\|223531444\|gb\|EEF33277.1\|	2.5e-64	46.64	Polygalacturonase precursor, putative [Ricinus communis]	[more]
gi\|672111710\|ref\|XP_008802072.1\|	3.3e-64	38.69	PREDICTED: polygalacturonase-like [Phoenix dactylifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000743	Glyco_hydro_28
IPR006626	PbH1
IPR011050	Pectin_lyase_fold/virulence
IPR012334	Pectin_lyas_fold

Vocabulary: **Molecular Function**
Term	Definition
GO:0004650	polygalacturonase activity

Vocabulary: **Biological Process**
Term	Definition
GO:0005975	carbohydrate metabolic process

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0005982	starch metabolic process
biological_process	GO:0005985	sucrose metabolic process
biological_process	GO:0005975	carbohydrate metabolic process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0004650	polygalacturonase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh00G001170.1	CmoCh00G001170.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000743	Glycoside hydrolase, family 28	PFAM	PF00295	Glyco_hydro_28	coord: 19..102 score: 6.7E-9coord: 128..262 score: 2.0
IPR006626	Parallel beta-helix repeat	SMART	SM00710	pbh1	coord: 127..148 score: 600.0coord: 166..187 score: 2.6coord: 196..217 score: 22
IPR011050	Pectin lyase fold/virulence factor	unknown	SSF51126	Pectin lyase-like	coord: 1..262 score: 1.3
IPR012334	Pectin lyase fold	GENE3D	G3DSA:2.160.20.10		coord: 1..105 score: 9.3E-22coord: 129..262 score: 5.8
None	No IPR available	PANTHER	PTHR31375	FAMILY NOT NAMED	coord: 1..263 score: 9.2E
None	No IPR available	PANTHER	PTHR31375:SF2	POLYGALACTURONASE/PECTINASE	coord: 1..263 score: 9.2E

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh00G001170	Cucurbita maxima (Rimu)	cmacmoB000
CmoCh00G001170	Cucurbita maxima (Rimu)	cmacmoB001