CmoCh00G000860 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh00G000860
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionOrf148b
LocationCmo_Chr00 : 17186031 .. 17188322 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAAACAAAACGGAATGTACCGGATTTTTAGCACGTACAACCATCAAACCAGAGACCAAAGCTGGGATCGACAAAACGGAAAGTATCATGGTACGTCGTCCTTCCCTGAAATGGAACTTTCATGCTGGAGCAAGAACTAGCGTGAAAGTGGATCTATTACGACCAGCGCGGTTGTTCGTATTTCATTTTCTTCGTCCAAGTCAAGCCCCTCTTAGAAAGCACTCGCTGAGTTACGTACGGAATCAATCTCAAATCTCTCTCGACGTCGAGAATTTGTTATGTTTCTAGGTCGATCAAAGGTTCGGCTTGCTTCTCCCCCACCTTTTAGCGTTATGGGCCCCTGAAAGAAAAAAGAAACCTGAAAGAAAAAAGAAAGAAGAGAAATTAGGCCATCTGATACTGATAGTCGACTGCTCTATAACGGGCTTCCCCGTTCCCTGGGCTCTGCTCGCTCGTATACGCTTCAATCCTGCAAGTAATAATAGACAAACTCTCTTTCCTTGCCTACATTAAGATTGAAAACTTGTTGAAAAAGGCAATCAAACAAATAGTGAATCAATATCTAGATGGATCCCTATCTTTATCTCTATCCACTGGGATACAGCTACATATGGATAGAAATCGATCTATGAATCGATCTAGACGAGACTCGAGACGGATAGATATGTCCGAGCGAGCCGATCTTTATATGTTTTGGCCACGTTTGTTTGCGCTCCAAAGAGGAAGGTTTGGATCTTTCAATCTTATGTCATGAGGGATGTGCCCTATCTTAGGTCCATAAGATACCACAACTTTTAGTGTTCTATGATTCACCTCCGAATAATGAGTAGGTAGTTCGATCCTTTTGATTTTGCTCTTCATAATAAACTGATGGGGGGATGCGGAGCAATAGGTCGAATTACTATATAAGGAAGAGTTGTAAACTATAGGACTGATTCTCCGAGTAGGAAGATCTCGGTTTTTCTCCTTCCTTCTATTCGATAAGAATAGGGATTGAAAATGATACAAATTCCTCTTCATTCTGTTGTGCTCAGCGAAGGAACAACCTAAGCATTCTGTTGTTCTCATTCCTTTCTTGTCTTGCCCAAAAACTTTCTGTATTCTCATTGGCGAAAGACTCTCCCGTGGCAAGGTTTTACACATAGGGGCACTTTCTCTCGCTTGCCGTTAGTCCGTCTAGCGCCTTTCGGTTCTGGCCCGCCCCGTGTGTTAGCTTGGGTTAGATTTTGGAGTCTGGAAGACATCCTTGTATTCTTTCAAAAGGTCAGCCATTCTTCTCCCATTAGACTTGATAATCCTTTATCAGATCTTTGTTCCTTCTCTCTTCCAGTTCTCTCTCTCCATAGACTAGATTTGACAGGGGCGGGGAATACCATTCTAATTCTATTCTATCAATAAGAAGAAGAAAGTAGCAATTCCGTTTCCAATGGTTTGAGCATGGAAGCAACCTACTATCTATCGATAGGCGAGAACAGACAGCTATGTTATTGGCAGCTTCGCCTATCTATTCTATCATGGCCGGCTTGGAGACAAAAGAGTAAGACCATCATCCCTGGCTGGGTACGATCATAACTTGATTCATTCGTTGAACCTTGGGGATAACCATTAGCATTGAGGTCAATCACCACACCACCCATATAAGAAATACGACATTCCATTCCTTCCGCGACAGTGCATGGTCAACGCACACCAAACCTAAAGCGCCTACATTCCGCTTGCAGCCAATCCAACCACAACCTAACTAAACTAGCACGAGATTCTACAATCGAAACTACTGGTAGTCTTGATTGAGGGGACTCCTCCTATAATAGTTAGCAGTACTGAACAAGCGAGTCATCGGTCCGGAGAAAGAAAAGAAACTCGCTTAACTCGCTAGGCCTTCGGAACAAAGACAAGGTGATTCTGTTCATGCTTCAGACGATCTGGCTACTAATTATAGATAATACTAGAATATTCGAAATGAGACGAAAGGCGAACCTATAGAGAGGCCTGTTTTAGCGCGTTTACAAAGGTAACCGGTTGGTTGGTTAGGTGGACTTTGACTTTTGAAACGGTTGGACTGGGAATGAAAAACCTCTGCTAACGCCCTTTGGCTAAGATCTTTTTTTGATCAGCAGCAATGAATGTCTTGTGTATCTATGAAGAAAGATTTCTCCCCGCGTTCAGACCCTGAATGCCATACCTTGCTTCAGGCGATTCTCTCGCGAATCATGCATAGTTCCGTTTGCCCGGGGAAGGAATGTCTGTGATCCGCTCGGTATAGTGCTGGATTTCATGGCCGACATCTAA

mRNA sequence

ATGGGAAACAAAACGGAATGTACCGGATTTTTAGCACGTACAACCATCAAACCAGAGACCAAAGCTGGGATCGACAAAACGGAAAGTATCATGGTCGATCAAAGGTTCGGCTTGCTTCTCCCCCACCTTTTAGCGTTATGGGCCCCTGAAAGAAAAAAGAAACCTGAAAGAAAAAAGAAAGAAGAGAAATTAGGCCATCTGATACTGATAGTCGACTGCTCTATAACGGGCTTCCCCGTTCCCTGGGCTCTGCTCGCTCGTATACGCTTCAATCCTGCAAAAGAAAGTAGCAATTCCGTTTCCAATGGTTTGAGCATGGAAGCAACCTACTATCTATCGATAGGCGAGAACAGACAGCTATGTTATTGGCAGCTTCGCCTATCTATTCTATCATGGCCGGCTTGGAGACAAAAGAGTAAGACCATCATCCCTGGCTGGATTTCTCCCCGCGTTCAGACCCTGAATGCCATACCTTGCTTCAGGCGATTCTCTCGCGAATCATGCATAGTTCCGTTTGCCCGGGGAAGGAATGTCTGTGATCCGCTCGGTATAGTGCTGGATTTCATGGCCGACATCTAA

Coding sequence (CDS)

ATGGGAAACAAAACGGAATGTACCGGATTTTTAGCACGTACAACCATCAAACCAGAGACCAAAGCTGGGATCGACAAAACGGAAAGTATCATGGTCGATCAAAGGTTCGGCTTGCTTCTCCCCCACCTTTTAGCGTTATGGGCCCCTGAAAGAAAAAAGAAACCTGAAAGAAAAAAGAAAGAAGAGAAATTAGGCCATCTGATACTGATAGTCGACTGCTCTATAACGGGCTTCCCCGTTCCCTGGGCTCTGCTCGCTCGTATACGCTTCAATCCTGCAAAAGAAAGTAGCAATTCCGTTTCCAATGGTTTGAGCATGGAAGCAACCTACTATCTATCGATAGGCGAGAACAGACAGCTATGTTATTGGCAGCTTCGCCTATCTATTCTATCATGGCCGGCTTGGAGACAAAAGAGTAAGACCATCATCCCTGGCTGGATTTCTCCCCGCGTTCAGACCCTGAATGCCATACCTTGCTTCAGGCGATTCTCTCGCGAATCATGCATAGTTCCGTTTGCCCGGGGAAGGAATGTCTGTGATCCGCTCGGTATAGTGCTGGATTTCATGGCCGACATCTAA
Homology
[Close]
BLAST of CmoCh00G000860 vs. TrEMBL
Match: A0A068BF53_BATMA (Orf148b OS=Batis maritima GN=orf148b PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 7.0e-15
Identity = 56/133 (42.11%), Postives = 62/133 (46.62%), Query Frame = 1 

Query: 1   MGNKTECTGFLARTTIKPETKAGIDKTESIM----------------------------- 60
           MGNKTECTGFLAR TIKPETKAG+DKTESIM                             
Sbjct: 1   MGNKTECTGFLARATIKPETKAGLDKTESIMVRRPSLKWNFHAEARTSMKVDLFITTSAV 60

Query: 61  -------------------------------------VDQRFGLLLPHLLALWAPERKKK 68
                                                VDQRFGLLLPHLLA ++PE+ K+
Sbjct: 61  VRLSFSFSKPSPSTKALAELLTESQISLDTENFLCAQVDQRFGLLLPHLLAFFSPEKIKQ 120

[Close]
BLAST of CmoCh00G000860 vs. TrEMBL
Match: A0A061EQD4_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_021470 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 1.2e-06
Identity = 29/44 (65.91%), Postives = 33/44 (75.00%), Query Frame = 1 

Query: 1  MGNKTECTGFLARTTIKPETKAGIDKTESIMVDQRFGLLLPHLL 45
          +GNKTECTGFLA  TIKPETKA +DKTESIM  +  G   P L+
Sbjct: 26 LGNKTECTGFLACATIKPETKAELDKTESIMASRTLGSPWPDLV 69

[Close]
BLAST of CmoCh00G000860 vs. TrEMBL
Match: A0A0V0GKJ7_SOLCH (Putative ovule protein OS=Solanum chacoense PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 3.5e-06
Identity = 28/32 (87.50%), Postives = 30/32 (93.75%), Query Frame = 1 

Query: 1  MGNKTECTGFLARTTIKPETKAGIDKTESIMV 33
          M NKTECTGFLARTTIKPETKA +DKTESI+V
Sbjct: 1  MKNKTECTGFLARTTIKPETKARLDKTESIIV 32

[Close]
BLAST of CmoCh00G000860 vs. NCBI nr
Match: gi|661813541|ref|YP_009045731.1| (orf148b (mitochondrion) [Batis maritima])

HSP 1 Score: 89.0 bits (219), Expect = 1.0e-14
Identity = 56/133 (42.11%), Postives = 62/133 (46.62%), Query Frame = 1 

Query: 1   MGNKTECTGFLARTTIKPETKAGIDKTESIM----------------------------- 60
           MGNKTECTGFLAR TIKPETKAG+DKTESIM                             
Sbjct: 1   MGNKTECTGFLARATIKPETKAGLDKTESIMVRRPSLKWNFHAEARTSMKVDLFITTSAV 60

Query: 61  -------------------------------------VDQRFGLLLPHLLALWAPERKKK 68
                                                VDQRFGLLLPHLLA ++PE+ K+
Sbjct: 61  VRLSFSFSKPSPSTKALAELLTESQISLDTENFLCAQVDQRFGLLLPHLLAFFSPEKIKQ 120

[Close]
BLAST of CmoCh00G000860 vs. NCBI nr
Match: gi|590662472|ref|XP_007035957.1| (Uncharacterized protein TCM_021470 [Theobroma cacao])

HSP 1 Score: 61.6 bits (148), Expect = 1.7e-06
Identity = 29/44 (65.91%), Postives = 33/44 (75.00%), Query Frame = 1 

Query: 1  MGNKTECTGFLARTTIKPETKAGIDKTESIMVDQRFGLLLPHLL 45
          +GNKTECTGFLA  TIKPETKA +DKTESIM  +  G   P L+
Sbjct: 26 LGNKTECTGFLACATIKPETKAELDKTESIMASRTLGSPWPDLV 69

The following BLAST results are available for this feature:
BLAST of CmoCh00G000860 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh00G000860 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A068BF53_BATMA7.0e-1542.11Orf148b OS=Batis maritima GN=orf148b PE=4 SV=1[more]
A0A061EQD4_THECC1.2e-0665.91Uncharacterized protein OS=Theobroma cacao GN=TCM_021470 PE=4 SV=1[more]
A0A0V0GKJ7_SOLCH3.5e-0687.50Putative ovule protein OS=Solanum chacoense PE=4 SV=1[more]
BLAST of CmoCh00G000860 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmoCh00G000860 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|661813541|ref|YP_009045731.1|1.0e-1442.11orf148b (mitochondrion) [Batis maritima][more]
gi|590662472|ref|XP_007035957.1|1.7e-0665.91Uncharacterized protein TCM_021470 [Theobroma cacao][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh00G000860.1CmoCh00G000860.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh00G000860Cucurbita maxima (Rimu)cmacmoB000
CmoCh00G000860Cucurbita maxima (Rimu)cmacmoB001