CmoCh00G000830 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh00G000830
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	structural constituent of ribosome;protein binding
Location	Cmo_Chr00 : 17171641 .. 17172535 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACCTTTGGCTTTCGTCTTGGTAGGTGTATTATTTTACATTTTCCCAAAATCACATTCATTCATTTCTTTCTTCCCCGTCGACCACGAGGACTGAAACGACGCGCAATATCCAAACCCAGAAAGGATCAGGGCCGGTGGTGGGCATTTGGGAAAGTCGGGCCAATTGGGTGTCTTCATTCAAGTGACGATACAGAAGAAGAACGAAACAAAGTGAGAGGCCGAGAGGCAGAGAAAAGAGTGGTGTCGATGATCAGGCTTGACGACCGGAAAAAGCAAAACAAAATTAGGATTTGGCCGAAAAAGAAGCAAGACTATGGATACCATGACCGATCACCATCGAGAAAGAAGAATCTTTCTAAATCACTTCGCGTCAGCAGGGCCTTCAAGCATCCGAAATATGCCGGAGTTGTAAATGACATAACGTTCCTGATCGAAAATGACGACTCCTTCAGAAAAACTCAGTTATTCAAGTTCTTTTTCCCAAATCAGTCCCGCTCCGACCGCCCGACGAGTCATCTACTTAAAAGAACCCTCCCCGCAGTGCGCCCCTACTTGAATTATTCGGTCATGCAATACTTATTGAATACAAAGAACAAAATGCATTTCGACCTCGTCAGAGTTCTCAATCATTTCGTGGCACCGGGCGTGACTGAACCATCTACGATGGGGGGAGCGAATACATAGGGAAGAAGCTTAGATAAGAGAATACGTTCTCACATGGCTTTTTTTTGTAGAAAGCTCGACCAGCGAGAAAAAGTGTTTGGCCGAACCCAGAAAGAGGTTGACCCACTTCATTCCCCAAGCAAATGATCTTCGTTTCGCGGGAACAACAAAAACAACCATCTCGCTCTTTCCTTTCTTTGGTGCTACCTTTTTCTTTCCAATTCTGTAA

mRNA sequence

ATGACCTTTGGCTTTCGTCTTGGTAGGTGTATTATTTTACATTTTCCCAAAATCACATTCATTCATTTCTTTCTTCCCCGTCGACCACGAGGACTGAAACGACGCGCAATATCCAAACCCAGAAAGGATCAGGGCCGGTGGTGGGCATTTGGGAAAGTCGGGCCAATTGGGTGTCTTCATTCAAGTGACGATACAGAAGAAGAACGAAACAAAGTGAGAGGCCGAGAGGCAGAGAAAAGAGTGGTGTCGATGATCAGGCTTGACGACCGGAAAAAGCAAAACAAAATTAGGATTTGGCCGAAAAAGAAGCAAGACTATGGATACCATGACCGATCACCATCGAGAAAGAAGAATCTTTCTAAATCACTTCGCGTCAGCAGGGCCTTCAAGCATCCGAAATATGCCGGAGTTGTAAATGACATAACGTTCCTGATCGAAAATGACGACTCCTTCAGAAAAACTCAGTTATTCAAGTTCTTTTTCCCAAATCAGTCCCGCTCCGACCGCCCGACGAGTCATCTACTTAAAAGAACCCTCCCCGCAGTGCGCCCCTACTTGAATTATTCGGTCATGCAATACTTATTGAATACAAAGAACAAAATGCATTTCGACCTCGTCAGAGTTCTCAATCATTTCGTGGCACCGGGCATAAGAGAATACGTTCTCACATGGCTTTTTTTTGTAGAAAGCTCGACCAGCGAGAAAAAGTGTTTGGCCGAACCCAGAAAGAGGTTGACCCACTTCATTCCCCAAGCAAATGATCTTCGTTTCGCGGGAACAACAAAAACAACCATCTCGCTCTTTCCTTTCTTTGGTGCTACCTTTTTCTTTCCAATTCTGTAA

Coding sequence (CDS)

ATGACCTTTGGCTTTCGTCTTGGTAGGTGTATTATTTTACATTTTCCCAAAATCACATTCATTCATTTCTTTCTTCCCCGTCGACCACGAGGACTGAAACGACGCGCAATATCCAAACCCAGAAAGGATCAGGGCCGGTGGTGGGCATTTGGGAAAGTCGGGCCAATTGGGTGTCTTCATTCAAGTGACGATACAGAAGAAGAACGAAACAAAGTGAGAGGCCGAGAGGCAGAGAAAAGAGTGGTGTCGATGATCAGGCTTGACGACCGGAAAAAGCAAAACAAAATTAGGATTTGGCCGAAAAAGAAGCAAGACTATGGATACCATGACCGATCACCATCGAGAAAGAAGAATCTTTCTAAATCACTTCGCGTCAGCAGGGCCTTCAAGCATCCGAAATATGCCGGAGTTGTAAATGACATAACGTTCCTGATCGAAAATGACGACTCCTTCAGAAAAACTCAGTTATTCAAGTTCTTTTTCCCAAATCAGTCCCGCTCCGACCGCCCGACGAGTCATCTACTTAAAAGAACCCTCCCCGCAGTGCGCCCCTACTTGAATTATTCGGTCATGCAATACTTATTGAATACAAAGAACAAAATGCATTTCGACCTCGTCAGAGTTCTCAATCATTTCGTGGCACCGGGCATAAGAGAATACGTTCTCACATGGCTTTTTTTTGTAGAAAGCTCGACCAGCGAGAAAAAGTGTTTGGCCGAACCCAGAAAGAGGTTGACCCACTTCATTCCCCAAGCAAATGATCTTCGTTTCGCGGGAACAACAAAAACAACCATCTCGCTCTTTCCTTTCTTTGGTGCTACCTTTTTCTTTCCAATTCTGTAA

Homology

[Close]

BLAST of CmoCh00G000830 vs. Swiss-Prot
Match: RT03_PETHY (Ribosomal protein S3, mitochondrial OS=Petunia hybrida GN=YRPS3 PE=2 SV=1)

HSP 1 Score: 453.4 bits (1165), Expect = 1.8e-126
Identity = 234/295 (79.32%), Postives = 248/295 (84.07%), Query Frame = 1


Query: 1   MTFGFRLGRCIILHFPKITFIHFFLPRRPRGLKRRAISKPRKDQGRWWAFGKVGPIGCLH 60
           +TFGFRLGRCIILHFPK TFIHFFLPRRPR LKRR  S+P K++GRW AFGKVGPIGCLH
Sbjct: 50  LTFGFRLGRCIILHFPKRTFIHFFLPRRPRRLKRREKSRPVKEKGRWGAFGKVGPIGCLH 109

Query: 61  SSDDTEEERNKVRGREAEKRVVSMIRLDDRKKQNKIRIWPKKKQDYGYHDRSPSRKKNLS 120
           SSD TEEERN+VRGR A KRV S IRLDDR+KQN+IRIWPKKKQ YGYHDRSPS KKNLS
Sbjct: 110 SSDGTEEERNEVRGRGAGKRVES-IRLDDREKQNEIRIWPKKKQGYGYHDRSPSIKKNLS 169

Query: 121 KSLRVSRAFKHPKYAGVVNDITFLIENDDSFRKTQLFKFFFPNQSRSDRPTSHLLKRTLP 180
           KSLRVS AFKHPKYAG+ NDI FLIENDDSFRKT LFKFFFP +SRSDRPTSHLLKRTLP
Sbjct: 170 KSLRVSGAFKHPKYAGIENDIAFLIENDDSFRKTNLFKFFFPKKSRSDRPTSHLLKRTLP 229

Query: 181 AVRPYLNYSVMQYLLNTKNKMHFDLVRVLNHFVAPGIRE-----------------YVLT 240
           AVRP LNYSVMQYLLNTKNK+HFD V VLNHFVAPG+ E                     
Sbjct: 230 AVRPSLNYSVMQYLLNTKNKIHFDPVVVLNHFVAPGVAEPSTMGGANAQGRSLDKRIASC 289

Query: 241 WLFFVESSTSEKKCLAEPRKRLTHFIPQANDLRFAGTTKTTISLFPFFGATFFFP 279
             FFVE+STSEKKCLAE +KR+THFI QANDLRFAGTTKTTISLFPFFGATFFFP
Sbjct: 290 IAFFVENSTSEKKCLAEAKKRVTHFIRQANDLRFAGTTKTTISLFPFFGATFFFP 343

[Close]

BLAST of CmoCh00G000830 vs. Swiss-Prot
Match: RT03_OENBE (Ribosomal protein S3, mitochondrial OS=Oenothera berteroana GN=RPS3 PE=3 SV=2)

HSP 1 Score: 432.6 bits (1111), Expect = 3.4e-120
Identity = 225/295 (76.27%), Postives = 240/295 (81.36%), Query Frame = 1


Query: 1   MTFGFRLGRCIILHFPKITFIHFFLPRRPRGLKRRAISKPRKDQGRWWAFGKVGPIGCLH 60
           +TFGFRLGRCIILHFPK TFIHFFLPRRPR LKR   S+P K++ RWW FGKVGPIGCLH
Sbjct: 51  LTFGFRLGRCIILHFPKRTFIHFFLPRRPRRLKRGKKSRPGKEKARWWEFGKVGPIGCLH 110

Query: 61  SSDDTEEERNKVRGREAEKRVVSMIRLDDRKKQNKIRIWPKKKQDYGYHDRSPSRKKNLS 120
           S+DDTEEERN+V GR A KRV S IRLDDR+KQN+IRIWPKKKQ YGYHDRSPS KKNLS
Sbjct: 111 SNDDTEEERNEVGGRGAGKRVES-IRLDDREKQNEIRIWPKKKQGYGYHDRSPSIKKNLS 170

Query: 121 KSLRVSRAFKHPKYAGVVNDITFLIENDDSFRKTQLFKFFFPNQSRSDRPTSHLLKRTLP 180
           KSLRVS AFKHPKYAGV+NDI FLIENDDSFRKT+LFKFFFP +SRSD PTSHLLKRT P
Sbjct: 171 KSLRVSGAFKHPKYAGVLNDIAFLIENDDSFRKTKLFKFFFPKKSRSDGPTSHLLKRTPP 230

Query: 181 AVRPYLNYSVMQYLLNTKNKMHFDLVRVLNHFVAPGIREYVLTW---------------- 240
           AVRP LNYSVMQY LNTKN+MHFD + VLNHFVAPG+ E                     
Sbjct: 231 AVRPSLNYSVMQYYLNTKNQMHFDPLVVLNHFVAPGVAEPSTMGGANRQGRSNELRIRSR 290

Query: 241 -LFFVESSTSEKKCLAEPRKRLTHFIPQANDLRFAGTTKTTISLFPFFGATFFFP 279
             FFVESSTSEKK LAE +K L HFI Q NDLRFAG TKTTISLFPFFGATFFFP
Sbjct: 291 IAFFVESSTSEKKSLAEDKKGLPHFIRQENDLRFAGRTKTTISLFPFFGATFFFP 344

[Close]

BLAST of CmoCh00G000830 vs. Swiss-Prot
Match: RT03_MAIZE (Ribosomal protein S3, mitochondrial OS=Zea mays GN=RPS3 PE=3 SV=1)

HSP 1 Score: 430.6 bits (1106), Expect = 1.3e-119
Identity = 225/293 (76.79%), Postives = 239/293 (81.57%), Query Frame = 1


Query: 1   MTFGFRLGRCIILHFPKITFIHFFLPRRPRGLKRRAISKPRKDQGRWWAFGKVGPIGCLH 60
           +TFGFRLGRCIILHFPK TFIHFFLPRRP  LKRR  S+P KD+GRWWAFGKVGPIGCLH
Sbjct: 51  LTFGFRLGRCIILHFPKRTFIHFFLPRRPLRLKRRDKSRPGKDKGRWWAFGKVGPIGCLH 110

Query: 61  SSDDTEEERNKVRGREAEKRVVSMIRLDDRKKQNKIRIWPKKKQDYGYHDRSPSRKKNLS 120
           SS+ TEEERN+VRGR A KRV S+    DR+KQN+IRIWPKK Q YGYHDR+PSRKKN S
Sbjct: 111 SSEGTEEERNEVRGRGAGKRVESI----DREKQNEIRIWPKKMQRYGYHDRTPSRKKNFS 170

Query: 121 KSLRVSRAFKHPKYAGVVNDITFLIENDDSFRKTQLFKFFF-PNQSRSDRPTSHLLKRTL 180
           KSLRVS AFKHPKYAGVVNDI FLIENDDSF KT+LFKFFF P +SRSD PTSHLLKRTL
Sbjct: 171 KSLRVSGAFKHPKYAGVVNDIAFLIENDDSFIKTKLFKFFFLPKKSRSDGPTSHLLKRTL 230

Query: 181 PAVRPYLNYSVMQYLLNTKNKMHFDLVRVLNHFVAPGIREYVLTW--------------- 240
           PAVRP LNYSVMQY  NTKNKMHFD V VLNHFVAPG+ E                    
Sbjct: 231 PAVRPSLNYSVMQYFFNTKNKMHFDPVVVLNHFVAPGVAEPSTMGGAKGGSLDKRIRSRI 290

Query: 241 LFFVESSTSEKKCLAEPRKRLTHFIPQANDLRFAGTTKTTISLFPFFGATFFF 278
            FFVESSTS+KKCLA  +KRL HFI QANDLRFAGTTKTTISLFPFFGATFFF
Sbjct: 291 AFFVESSTSDKKCLARAKKRLIHFIRQANDLRFAGTTKTTISLFPFFGATFFF 339

[Close]

BLAST of CmoCh00G000830 vs. Swiss-Prot
Match: RT03_ARATH (Ribosomal protein S3, mitochondrial OS=Arabidopsis thaliana GN=RPS3 PE=2 SV=3)

HSP 1 Score: 407.9 bits (1047), Expect = 8.9e-113
Identity = 217/295 (73.56%), Postives = 234/295 (79.32%), Query Frame = 1


Query: 1   MTFGFRLGRCIILHFPKITFIHFFLPRRPRGLKRRAISKPRKDQGRWWA-FGKVGPIGCL 60
           +TFGFRLGRCIILHFPK TFIHFFLPRRPR LKRR  ++P K++GRWW  FGK GPI CL
Sbjct: 51  LTFGFRLGRCIILHFPKRTFIHFFLPRRPRRLKRREKTRPGKEKGRWWTTFGKAGPIECL 110

Query: 61  HSSDDTEEERNKVRGREAEKRVVSMIRLDDRKKQNKIRIWPKKKQDYGYHDRSPSRKKNL 120
           HSSDDTEEERN+VRGR A KRV S IRLDDRKKQN+IR WPKKKQ YGYHDR PS KKNL
Sbjct: 111 HSSDDTEEERNEVRGRGARKRVES-IRLDDRKKQNEIRGWPKKKQRYGYHDRLPSIKKNL 170

Query: 121 SKSLRVSRAFKHPKYAGVVNDITFLIENDDSFRKTQLFKFFFPNQSRSDRPTSHLLKRTL 180
           SK LR+S AFKHPKYAGVVNDI FLIENDDSF+KT+LFK FF N+SRSD PTS+L  RTL
Sbjct: 171 SKLLRISGAFKHPKYAGVVNDIAFLIENDDSFKKTKLFKLFFQNKSRSDGPTSYL--RTL 230

Query: 181 PAVRPYLNYSVMQYLLNTKNKMHFDLVRVLNHFVAPGIREYVLTW--------------- 240
           PAVRP LN+ VMQY  NTKN+++FD V VLNHFVAPG  E                    
Sbjct: 231 PAVRPSLNFLVMQYFFNTKNQINFDPVVVLNHFVAPGAAEPSTMGRANAQGRSLQKRIRS 290

Query: 241 --LFFVESSTSEKKCLAEPRKRLTHFIPQANDLRFAGTTKTTISLFPFFGATFFF 278
              FFVES TSEKKCLAE + RLTHFI  ANDLRFAGTTKTTISLFPFFGATFFF
Sbjct: 291 RIAFFVESLTSEKKCLAEAKNRLTHFIRLANDLRFAGTTKTTISLFPFFGATFFF 342

[Close]

BLAST of CmoCh00G000830 vs. Swiss-Prot
Match: RT03_BRANA (Ribosomal protein S3, mitochondrial OS=Brassica napus GN=RPS3 PE=3 SV=1)

HSP 1 Score: 397.9 bits (1021), Expect = 9.2e-110
Identity = 214/296 (72.30%), Postives = 231/296 (78.04%), Query Frame = 1


Query: 1   MTFGFRLGRCIILHFPKITFIHFFLPRRPRGLKRRAISKPRKDQGRWWAF-GKVGPIGCL 60
           +TFGFRLGRCI+LHFPK TFIHFFLPRRPR LKRR  ++P K++GRWW   GK GPIGCL
Sbjct: 51  LTFGFRLGRCILLHFPKRTFIHFFLPRRPRRLKRREKTRPGKEKGRWWTTPGKAGPIGCL 110

Query: 61  HSSDDTEEERNKVRGREAEKRVVSMIRLDDRKKQNKIRIWPKKKQDYGYHDRSPSRKKNL 120
              DDTEEERN+VRGR A KRV S IRLDDRKKQN+IR WPKKKQ YGYHDR+PS KKNL
Sbjct: 111 R--DDTEEERNEVRGRGARKRVES-IRLDDRKKQNEIRGWPKKKQRYGYHDRTPSIKKNL 170

Query: 121 SKSLRVSRAFKHPKYAGVVNDITFLIENDDSFRKTQLFKFFFPNQSRSDRPTSHLLKRTL 180
           SKSLR+S AFKHPKY GVVNDI FLIENDDSFRKT+LFKFFFP +SRSD PTS+L  RTL
Sbjct: 171 SKSLRISGAFKHPKYGGVVNDIAFLIENDDSFRKTKLFKFFFPKKSRSDGPTSYL--RTL 230

Query: 181 PAVRPYLNYSVMQYLLNTKNKMHFDLVRVLNHFVAPGIREYVLTW--------------- 240
           PAV P LN+ VMQY  NTKN+M+FD V VLNHFVAPG  E                    
Sbjct: 231 PAVGPSLNFLVMQYFFNTKNQMNFDPVVVLNHFVAPGAAEPSTMGRANGTGDRSLQKRIR 290

Query: 241 ---LFFVESSTSEKKCLAEPRKRLTHFIPQANDLRFAGTTKTTISLFPFFGATFFF 278
               FFVESSTSEKKCLAE + RLTH I  ANDL FAGTTKTTISLFPFFGATFFF
Sbjct: 291 SRIAFFVESSTSEKKCLAEAKNRLTHLIRLANDLGFAGTTKTTISLFPFFGATFFF 341

[Close]

BLAST of CmoCh00G000830 vs. TrEMBL
Match: D5I3F1_CUCPE (Ribosomal protein S3 OS=Cucurbita pepo GN=rps3 PE=3 SV=1)

HSP 1 Score: 498.4 bits (1282), Expect = 5.6e-138
Identity = 253/295 (85.76%), Postives = 258/295 (87.46%), Query Frame = 1


Query: 1   MTFGFRLGRCIILHFPKITFIHFFLPRRPRGLKRRAISKPRKDQGRWWAFGKVGPIGCLH 60
           +TFGFRLGRCIILHFPKITFIHFFLPRRPRGLKRRA SKP KDQGRWWAFGKVGPIGCLH
Sbjct: 51  LTFGFRLGRCIILHFPKITFIHFFLPRRPRGLKRRAKSKPGKDQGRWWAFGKVGPIGCLH 110

Query: 61  SSDDTEEERNKVRGREAEKRVVSMIRLDDRKKQNKIRIWPKKKQDYGYHDRSPSRKKNLS 120
           SSDDTEEERNKVRGREAEKRV SMIRLDDR+KQN+IRIWPKKKQDYGYHDRSPSRKKNLS
Sbjct: 111 SSDDTEEERNKVRGREAEKRVESMIRLDDREKQNEIRIWPKKKQDYGYHDRSPSRKKNLS 170

Query: 121 KSLRVSRAFKHPKYAGVVNDITFLIENDDSFRKTQLFKFFFPNQSRSDRPTSHLLKRTLP 180
           K LRVS AFKHPKYAGVVNDI FLIENDDSFRKTQLFKFFFPNQSRSD PTSHLLKRTLP
Sbjct: 171 KLLRVSGAFKHPKYAGVVNDIAFLIENDDSFRKTQLFKFFFPNQSRSDGPTSHLLKRTLP 230

Query: 181 AVRPYLNYSVMQYLLNTKNKMHFDLVRVLNHFVAPGIREYVLTW---------------- 240
           AVRP LNY VMQYLLNTKNKMHFD V VLNHFVAPG+ E                     
Sbjct: 231 AVRPSLNYLVMQYLLNTKNKMHFDPVGVLNHFVAPGVAEPSTMGGANTQGRSLDKRIRSR 290

Query: 241 -LFFVESSTSEKKCLAEPRKRLTHFIPQANDLRFAGTTKTTISLFPFFGATFFFP 279
             FFVES TSEKKCLAEP+KRLTHFI QANDLRFAGTTKTTISLFPFFGATFFFP
Sbjct: 291 IAFFVESLTSEKKCLAEPKKRLTHFIRQANDLRFAGTTKTTISLFPFFGATFFFP 345

[Close]

BLAST of CmoCh00G000830 vs. TrEMBL
Match: E5DM03_CUCPE (Ribosomal protein S3 (Fragment) OS=Cucurbita pepo GN=rps3 PE=3 SV=1)

HSP 1 Score: 498.0 bits (1281), Expect = 7.3e-138
Identity = 253/291 (86.94%), Postives = 257/291 (88.32%), Query Frame = 1


Query: 5   FRLGRCIILHFPKITFIHFFLPRRPRGLKRRAISKPRKDQGRWWAFGKVGPIGCLHSSDD 64
           FRLGRCIILHFPKITFIHFFLPRRPRGLKRRA SKP KDQGRWWAFGKVGPIGCLHSSDD
Sbjct: 1   FRLGRCIILHFPKITFIHFFLPRRPRGLKRRAKSKPGKDQGRWWAFGKVGPIGCLHSSDD 60

Query: 65  TEEERNKVRGREAEKRVVSMIRLDDRKKQNKIRIWPKKKQDYGYHDRSPSRKKNLSKSLR 124
           TEEERNKVRGREAEKRV SMIRLDDR+KQN+IRIWPKKKQDYGYHDRSPSRKKNLSKSLR
Sbjct: 61  TEEERNKVRGREAEKRVESMIRLDDREKQNEIRIWPKKKQDYGYHDRSPSRKKNLSKSLR 120

Query: 125 VSRAFKHPKYAGVVNDITFLIENDDSFRKTQLFKFFFPNQSRSDRPTSHLLKRTLPAVRP 184
           VS AFKHPKYAGVVNDI FLIENDDSFRKTQLFKFFFPNQSRSD PTSHLLKRTLPAVRP
Sbjct: 121 VSGAFKHPKYAGVVNDIAFLIENDDSFRKTQLFKFFFPNQSRSDGPTSHLLKRTLPAVRP 180

Query: 185 YLNYSVMQYLLNTKNKMHFDLVRVLNHFVAPGIREYVLTW-----------------LFF 244
            LNYSVMQYLLNTKNKMHFD V VLNHFVAPG+ E                       FF
Sbjct: 181 SLNYSVMQYLLNTKNKMHFDPVGVLNHFVAPGVAEPSTMGGANTQGRSLDKRIRSRIAFF 240

Query: 245 VESSTSEKKCLAEPRKRLTHFIPQANDLRFAGTTKTTISLFPFFGATFFFP 279
           VESSTSEKKCLAEP+KRLTHFI QANDLRFAGTTKTTISLFPFFGATFFFP
Sbjct: 241 VESSTSEKKCLAEPKKRLTHFIRQANDLRFAGTTKTTISLFPFFGATFFFP 291

[Close]

BLAST of CmoCh00G000830 vs. TrEMBL
Match: D5I3A1_CITLA (Ribosomal protein S3 OS=Citrullus lanatus GN=rps3 PE=3 SV=1)

HSP 1 Score: 464.2 bits (1193), Expect = 1.2e-127
Identity = 240/295 (81.36%), Postives = 250/295 (84.75%), Query Frame = 1


Query: 1   MTFGFRLGRCIILHFPKITFIHFFLPRRPRGLKRRAISKPRKDQGRWWAFGKVGPIGCLH 60
           +TFGFRLGRCIILHFPK TFIHFFLPRRPR LKRR  SKP K++GRWWAFGKVGPIGCLH
Sbjct: 51  LTFGFRLGRCIILHFPKRTFIHFFLPRRPRRLKRREKSKPGKEKGRWWAFGKVGPIGCLH 110

Query: 61  SSDDTEEERNKVRGREAEKRVVSMIRLDDRKKQNKIRIWPKKKQDYGYHDRSPSRKKNLS 120
           SSDDTEEERN+VRGREAEKRV S IRLDDR+KQN+IRIWPKKKQ YGYHDRSPS KKNLS
Sbjct: 111 SSDDTEEERNEVRGREAEKRVES-IRLDDREKQNEIRIWPKKKQRYGYHDRSPSIKKNLS 170

Query: 121 KSLRVSRAFKHPKYAGVVNDITFLIENDDSFRKTQLFKFFFPNQSRSDRPTSHLLKRTLP 180
           K LRVS AFKHPKYAGVVNDI FLIENDDSFRKT+LFKFFFP +SRSD PTSHLLKRTLP
Sbjct: 171 KLLRVSGAFKHPKYAGVVNDIAFLIENDDSFRKTKLFKFFFPKKSRSDGPTSHLLKRTLP 230

Query: 181 AVRPYLNYSVMQYLLNTKNKMHFDLVRVLNHFVAPGIREYVLTW---------------- 240
           AVRP LNY VMQYLLNTKNKMHFD V VLNHFVAPG+ E                     
Sbjct: 231 AVRPSLNYLVMQYLLNTKNKMHFDPVVVLNHFVAPGVAEPSTMGGANTQGRSLDKRIRSR 290

Query: 241 -LFFVESSTSEKKCLAEPRKRLTHFIPQANDLRFAGTTKTTISLFPFFGATFFFP 279
             FFVES TSEKKCLAE +KRLTHFI QANDLRFAGTTKTTISLFPFFGATFFFP
Sbjct: 291 IAFFVESLTSEKKCLAEAKKRLTHFIRQANDLRFAGTTKTTISLFPFFGATFFFP 344

[Close]

BLAST of CmoCh00G000830 vs. TrEMBL
Match: I3NUP7_9ASTE (Ribosomal protein S3 (Fragment) OS=Vahlia capensis GN=rps3 PE=3 SV=1)

HSP 1 Score: 459.1 bits (1180), Expect = 3.7e-126
Identity = 237/295 (80.34%), Postives = 251/295 (85.08%), Query Frame = 1


Query: 1   MTFGFRLGRCIILHFPKITFIHFFLPRRPRGLKRRAISKPRKDQGRWWAFGKVGPIGCLH 60
           +TFGFRLGRCIILHFPK TFIHFFLPRRPR LKRR  S+P K+ GRWWAFGKVGPIGCLH
Sbjct: 8   LTFGFRLGRCIILHFPKTTFIHFFLPRRPRRLKRREKSRPGKETGRWWAFGKVGPIGCLH 67

Query: 61  SSDDTEEERNKVRGREAEKRVVSMIRLDDRKKQNKIRIWPKKKQDYGYHDRSPSRKKNLS 120
           SSD+TEEERN+VRGR A KRV S IRLDDR+KQ++IRIWPKKKQ YGYHDRSPS KKNLS
Sbjct: 68  SSDNTEEERNEVRGRGAGKRVES-IRLDDREKQSEIRIWPKKKQGYGYHDRSPSIKKNLS 127

Query: 121 KSLRVSRAFKHPKYAGVVNDITFLIENDDSFRKTQLFKFFFPNQSRSDRPTSHLLKRTLP 180
           KSLRVS AFKHPKYAGVVNDITFLIENDDSFRKT+LFKFFFP +SRSD PTSHLLKRTLP
Sbjct: 128 KSLRVSGAFKHPKYAGVVNDITFLIENDDSFRKTKLFKFFFPKKSRSDGPTSHLLKRTLP 187

Query: 181 AVRPYLNYSVMQYLLNTKNKMHFDLVRVLNHFVAPGIREYVLTW---------------- 240
           AVRP LNYSVMQYLLNTKNKM+FD V VLNHFVAPG+ E                     
Sbjct: 188 AVRPSLNYSVMQYLLNTKNKMNFDPVIVLNHFVAPGVAEPSTMGGANAQERSLDKRIRSR 247

Query: 241 -LFFVESSTSEKKCLAEPRKRLTHFIPQANDLRFAGTTKTTISLFPFFGATFFFP 279
             FFVESSTS+KKCLAE +KRLTHFI QANDLRFAGTTKTTISLFPFFGATFFFP
Sbjct: 248 IAFFVESSTSDKKCLAEAKKRLTHFIRQANDLRFAGTTKTTISLFPFFGATFFFP 301

[Close]

BLAST of CmoCh00G000830 vs. TrEMBL
Match: E5DM74_IXEBR (Ribosomal protein S3 (Fragment) OS=Ixerba brexioides GN=rps3 PE=3 SV=1)

HSP 1 Score: 458.0 bits (1177), Expect = 8.3e-126
Identity = 237/291 (81.44%), Postives = 248/291 (85.22%), Query Frame = 1


Query: 5   FRLGRCIILHFPKITFIHFFLPRRPRGLKRRAISKPRKDQGRWWAFGKVGPIGCLHSSDD 64
           FRLGRCIILHFPK TFIHFFLPRRPR LKRRA S+P K++GRWWAFGKVGPIGCLHSSDD
Sbjct: 1   FRLGRCIILHFPKRTFIHFFLPRRPRRLKRRAKSRPGKEKGRWWAFGKVGPIGCLHSSDD 60

Query: 65  TEEERNKVRGREAEKRVVSMIRLDDRKKQNKIRIWPKKKQDYGYHDRSPSRKKNLSKSLR 124
           TEEERN+VRGR A KRV S IRLDDR+KQN+IRIWPKKKQ YGYHDRSPS KKNLSKSLR
Sbjct: 61  TEEERNEVRGRGAGKRVES-IRLDDREKQNEIRIWPKKKQRYGYHDRSPSIKKNLSKSLR 120

Query: 125 VSRAFKHPKYAGVVNDITFLIENDDSFRKTQLFKFFFPNQSRSDRPTSHLLKRTLPAVRP 184
           VS AFKHPKYAGVVNDI FLIENDDSFRKT+LFKFFFP +SRSD PTSHLLKRTLPAVRP
Sbjct: 121 VSGAFKHPKYAGVVNDIAFLIENDDSFRKTKLFKFFFPKKSRSDGPTSHLLKRTLPAVRP 180

Query: 185 YLNYSVMQYLLNTKNKMHFDLVRVLNHFVAPGIREYVLTW-----------------LFF 244
            LNYSVMQYLLNTKNKMHFD V VLNHFVAPG+ E                       FF
Sbjct: 181 SLNYSVMQYLLNTKNKMHFDPVVVLNHFVAPGVAEPSTMGGANAQERSLDKRIRSRIAFF 240

Query: 245 VESSTSEKKCLAEPRKRLTHFIPQANDLRFAGTTKTTISLFPFFGATFFFP 279
           VESSTS+KKCLAE +KRLTHFI QANDLRFAGTTKTTISLFPFFGATFFFP
Sbjct: 241 VESSTSDKKCLAEAKKRLTHFIRQANDLRFAGTTKTTISLFPFFGATFFFP 290

[Close]

BLAST of CmoCh00G000830 vs. TAIR10
Match: ATMG00090.1 (ATMG00090.1 structural constituent of ribosome;protein binding)

HSP 1 Score: 412.5 bits (1059), Expect = 2.0e-115
Identity = 219/295 (74.24%), Postives = 236/295 (80.00%), Query Frame = 1


Query: 1   MTFGFRLGRCIILHFPKITFIHFFLPRRPRGLKRRAISKPRKDQGRWWA-FGKVGPIGCL 60
           +TFGFRLGRCIILHFPK TFIHFFLPRRPR LKRR  ++P K++GRWW  FGK GPI CL
Sbjct: 51  LTFGFRLGRCIILHFPKRTFIHFFLPRRPRRLKRREKTRPGKEKGRWWTTFGKAGPIECL 110

Query: 61  HSSDDTEEERNKVRGREAEKRVVSMIRLDDRKKQNKIRIWPKKKQDYGYHDRSPSRKKNL 120
           HSSDDTEEERN+VRGR A KRV S IRLDDRKKQN+IR WPKKKQ YGYHDR PS KKNL
Sbjct: 111 HSSDDTEEERNEVRGRGARKRVES-IRLDDRKKQNEIRGWPKKKQRYGYHDRLPSIKKNL 170

Query: 121 SKSLRVSRAFKHPKYAGVVNDITFLIENDDSFRKTQLFKFFFPNQSRSDRPTSHLLKRTL 180
           SKSLR+S AFKHPKYAGVVNDI FLIENDDSF+KT+LFK FF N+SRSD PTS+L  RTL
Sbjct: 171 SKSLRISGAFKHPKYAGVVNDIAFLIENDDSFKKTKLFKLFFQNKSRSDGPTSYL--RTL 230

Query: 181 PAVRPYLNYSVMQYLLNTKNKMHFDLVRVLNHFVAPGIREYVLTW--------------- 240
           PAVRP LN+ VMQY  NTKN+++FD V VLNHFVAPG  E                    
Sbjct: 231 PAVRPSLNFLVMQYFFNTKNQINFDPVVVLNHFVAPGAAEPSTMGRANAQGRSLQKRIRS 290

Query: 241 --LFFVESSTSEKKCLAEPRKRLTHFIPQANDLRFAGTTKTTISLFPFFGATFFF 278
              FFVESSTSEKKCLAE + RLTHFI  ANDLRFAGTTKTTISLFPFFGATFFF
Sbjct: 291 RIAFFVESSTSEKKCLAEAKNRLTHFIRLANDLRFAGTTKTTISLFPFFGATFFF 342

[Close]

BLAST of CmoCh00G000830 vs. NCBI nr
Match: gi|295311706|ref|YP_003587365.1| (ribosomal protein S3 [Cucurbita pepo])

HSP 1 Score: 498.4 bits (1282), Expect = 8.0e-138
Identity = 253/295 (85.76%), Postives = 258/295 (87.46%), Query Frame = 1


Query: 1   MTFGFRLGRCIILHFPKITFIHFFLPRRPRGLKRRAISKPRKDQGRWWAFGKVGPIGCLH 60
           +TFGFRLGRCIILHFPKITFIHFFLPRRPRGLKRRA SKP KDQGRWWAFGKVGPIGCLH
Sbjct: 51  LTFGFRLGRCIILHFPKITFIHFFLPRRPRGLKRRAKSKPGKDQGRWWAFGKVGPIGCLH 110

Query: 61  SSDDTEEERNKVRGREAEKRVVSMIRLDDRKKQNKIRIWPKKKQDYGYHDRSPSRKKNLS 120
           SSDDTEEERNKVRGREAEKRV SMIRLDDR+KQN+IRIWPKKKQDYGYHDRSPSRKKNLS
Sbjct: 111 SSDDTEEERNKVRGREAEKRVESMIRLDDREKQNEIRIWPKKKQDYGYHDRSPSRKKNLS 170

Query: 121 KSLRVSRAFKHPKYAGVVNDITFLIENDDSFRKTQLFKFFFPNQSRSDRPTSHLLKRTLP 180
           K LRVS AFKHPKYAGVVNDI FLIENDDSFRKTQLFKFFFPNQSRSD PTSHLLKRTLP
Sbjct: 171 KLLRVSGAFKHPKYAGVVNDIAFLIENDDSFRKTQLFKFFFPNQSRSDGPTSHLLKRTLP 230

Query: 181 AVRPYLNYSVMQYLLNTKNKMHFDLVRVLNHFVAPGIREYVLTW---------------- 240
           AVRP LNY VMQYLLNTKNKMHFD V VLNHFVAPG+ E                     
Sbjct: 231 AVRPSLNYLVMQYLLNTKNKMHFDPVGVLNHFVAPGVAEPSTMGGANTQGRSLDKRIRSR 290

Query: 241 -LFFVESSTSEKKCLAEPRKRLTHFIPQANDLRFAGTTKTTISLFPFFGATFFFP 279
             FFVES TSEKKCLAEP+KRLTHFI QANDLRFAGTTKTTISLFPFFGATFFFP
Sbjct: 291 IAFFVESLTSEKKCLAEPKKRLTHFIRQANDLRFAGTTKTTISLFPFFGATFFFP 345

[Close]

BLAST of CmoCh00G000830 vs. NCBI nr
Match: gi|302748681|gb|ADL63821.1| (ribosomal protein S3, partial (mitochondrion) [Cucurbita pepo])

HSP 1 Score: 498.0 bits (1281), Expect = 1.0e-137
Identity = 253/291 (86.94%), Postives = 257/291 (88.32%), Query Frame = 1


Query: 5   FRLGRCIILHFPKITFIHFFLPRRPRGLKRRAISKPRKDQGRWWAFGKVGPIGCLHSSDD 64
           FRLGRCIILHFPKITFIHFFLPRRPRGLKRRA SKP KDQGRWWAFGKVGPIGCLHSSDD
Sbjct: 1   FRLGRCIILHFPKITFIHFFLPRRPRGLKRRAKSKPGKDQGRWWAFGKVGPIGCLHSSDD 60

Query: 65  TEEERNKVRGREAEKRVVSMIRLDDRKKQNKIRIWPKKKQDYGYHDRSPSRKKNLSKSLR 124
           TEEERNKVRGREAEKRV SMIRLDDR+KQN+IRIWPKKKQDYGYHDRSPSRKKNLSKSLR
Sbjct: 61  TEEERNKVRGREAEKRVESMIRLDDREKQNEIRIWPKKKQDYGYHDRSPSRKKNLSKSLR 120

Query: 125 VSRAFKHPKYAGVVNDITFLIENDDSFRKTQLFKFFFPNQSRSDRPTSHLLKRTLPAVRP 184
           VS AFKHPKYAGVVNDI FLIENDDSFRKTQLFKFFFPNQSRSD PTSHLLKRTLPAVRP
Sbjct: 121 VSGAFKHPKYAGVVNDIAFLIENDDSFRKTQLFKFFFPNQSRSDGPTSHLLKRTLPAVRP 180

Query: 185 YLNYSVMQYLLNTKNKMHFDLVRVLNHFVAPGIREYVLTW-----------------LFF 244
            LNYSVMQYLLNTKNKMHFD V VLNHFVAPG+ E                       FF
Sbjct: 181 SLNYSVMQYLLNTKNKMHFDPVGVLNHFVAPGVAEPSTMGGANTQGRSLDKRIRSRIAFF 240

Query: 245 VESSTSEKKCLAEPRKRLTHFIPQANDLRFAGTTKTTISLFPFFGATFFFP 279
           VESSTSEKKCLAEP+KRLTHFI QANDLRFAGTTKTTISLFPFFGATFFFP
Sbjct: 241 VESSTSEKKCLAEPKKRLTHFIRQANDLRFAGTTKTTISLFPFFGATFFFP 291

[Close]

BLAST of CmoCh00G000830 vs. NCBI nr
Match: gi|295311662|ref|YP_003587231.1| (ribosomal protein S3 [Citrullus lanatus])

HSP 1 Score: 464.2 bits (1193), Expect = 1.7e-127
Identity = 240/295 (81.36%), Postives = 250/295 (84.75%), Query Frame = 1


Query: 1   MTFGFRLGRCIILHFPKITFIHFFLPRRPRGLKRRAISKPRKDQGRWWAFGKVGPIGCLH 60
           +TFGFRLGRCIILHFPK TFIHFFLPRRPR LKRR  SKP K++GRWWAFGKVGPIGCLH
Sbjct: 51  LTFGFRLGRCIILHFPKRTFIHFFLPRRPRRLKRREKSKPGKEKGRWWAFGKVGPIGCLH 110

Query: 61  SSDDTEEERNKVRGREAEKRVVSMIRLDDRKKQNKIRIWPKKKQDYGYHDRSPSRKKNLS 120
           SSDDTEEERN+VRGREAEKRV S IRLDDR+KQN+IRIWPKKKQ YGYHDRSPS KKNLS
Sbjct: 111 SSDDTEEERNEVRGREAEKRVES-IRLDDREKQNEIRIWPKKKQRYGYHDRSPSIKKNLS 170

Query: 121 KSLRVSRAFKHPKYAGVVNDITFLIENDDSFRKTQLFKFFFPNQSRSDRPTSHLLKRTLP 180
           K LRVS AFKHPKYAGVVNDI FLIENDDSFRKT+LFKFFFP +SRSD PTSHLLKRTLP
Sbjct: 171 KLLRVSGAFKHPKYAGVVNDIAFLIENDDSFRKTKLFKFFFPKKSRSDGPTSHLLKRTLP 230

Query: 181 AVRPYLNYSVMQYLLNTKNKMHFDLVRVLNHFVAPGIREYVLTW---------------- 240
           AVRP LNY VMQYLLNTKNKMHFD V VLNHFVAPG+ E                     
Sbjct: 231 AVRPSLNYLVMQYLLNTKNKMHFDPVVVLNHFVAPGVAEPSTMGGANTQGRSLDKRIRSR 290

Query: 241 -LFFVESSTSEKKCLAEPRKRLTHFIPQANDLRFAGTTKTTISLFPFFGATFFFP 279
             FFVES TSEKKCLAE +KRLTHFI QANDLRFAGTTKTTISLFPFFGATFFFP
Sbjct: 291 IAFFVESLTSEKKCLAEAKKRLTHFIRQANDLRFAGTTKTTISLFPFFGATFFFP 344

[Close]

BLAST of CmoCh00G000830 vs. NCBI nr
Match: gi|335060254|gb|AEH27421.1| (ribosomal protein S3, partial (mitochondrion) [Vahlia capensis])

HSP 1 Score: 459.1 bits (1180), Expect = 5.4e-126
Identity = 237/295 (80.34%), Postives = 251/295 (85.08%), Query Frame = 1


Query: 1   MTFGFRLGRCIILHFPKITFIHFFLPRRPRGLKRRAISKPRKDQGRWWAFGKVGPIGCLH 60
           +TFGFRLGRCIILHFPK TFIHFFLPRRPR LKRR  S+P K+ GRWWAFGKVGPIGCLH
Sbjct: 8   LTFGFRLGRCIILHFPKTTFIHFFLPRRPRRLKRREKSRPGKETGRWWAFGKVGPIGCLH 67

Query: 61  SSDDTEEERNKVRGREAEKRVVSMIRLDDRKKQNKIRIWPKKKQDYGYHDRSPSRKKNLS 120
           SSD+TEEERN+VRGR A KRV S IRLDDR+KQ++IRIWPKKKQ YGYHDRSPS KKNLS
Sbjct: 68  SSDNTEEERNEVRGRGAGKRVES-IRLDDREKQSEIRIWPKKKQGYGYHDRSPSIKKNLS 127

Query: 121 KSLRVSRAFKHPKYAGVVNDITFLIENDDSFRKTQLFKFFFPNQSRSDRPTSHLLKRTLP 180
           KSLRVS AFKHPKYAGVVNDITFLIENDDSFRKT+LFKFFFP +SRSD PTSHLLKRTLP
Sbjct: 128 KSLRVSGAFKHPKYAGVVNDITFLIENDDSFRKTKLFKFFFPKKSRSDGPTSHLLKRTLP 187

Query: 181 AVRPYLNYSVMQYLLNTKNKMHFDLVRVLNHFVAPGIREYVLTW---------------- 240
           AVRP LNYSVMQYLLNTKNKM+FD V VLNHFVAPG+ E                     
Sbjct: 188 AVRPSLNYSVMQYLLNTKNKMNFDPVIVLNHFVAPGVAEPSTMGGANAQERSLDKRIRSR 247

Query: 241 -LFFVESSTSEKKCLAEPRKRLTHFIPQANDLRFAGTTKTTISLFPFFGATFFFP 279
             FFVESSTS+KKCLAE +KRLTHFI QANDLRFAGTTKTTISLFPFFGATFFFP
Sbjct: 248 IAFFVESSTSDKKCLAEAKKRLTHFIRQANDLRFAGTTKTTISLFPFFGATFFFP 301

[Close]

BLAST of CmoCh00G000830 vs. NCBI nr
Match: gi|302748824|gb|ADL63892.1| (ribosomal protein S3, partial (mitochondrion) [Ixerba brexioides])

HSP 1 Score: 458.0 bits (1177), Expect = 1.2e-125
Identity = 237/291 (81.44%), Postives = 248/291 (85.22%), Query Frame = 1


Query: 5   FRLGRCIILHFPKITFIHFFLPRRPRGLKRRAISKPRKDQGRWWAFGKVGPIGCLHSSDD 64
           FRLGRCIILHFPK TFIHFFLPRRPR LKRRA S+P K++GRWWAFGKVGPIGCLHSSDD
Sbjct: 1   FRLGRCIILHFPKRTFIHFFLPRRPRRLKRRAKSRPGKEKGRWWAFGKVGPIGCLHSSDD 60

Query: 65  TEEERNKVRGREAEKRVVSMIRLDDRKKQNKIRIWPKKKQDYGYHDRSPSRKKNLSKSLR 124
           TEEERN+VRGR A KRV S IRLDDR+KQN+IRIWPKKKQ YGYHDRSPS KKNLSKSLR
Sbjct: 61  TEEERNEVRGRGAGKRVES-IRLDDREKQNEIRIWPKKKQRYGYHDRSPSIKKNLSKSLR 120

Query: 125 VSRAFKHPKYAGVVNDITFLIENDDSFRKTQLFKFFFPNQSRSDRPTSHLLKRTLPAVRP 184
           VS AFKHPKYAGVVNDI FLIENDDSFRKT+LFKFFFP +SRSD PTSHLLKRTLPAVRP
Sbjct: 121 VSGAFKHPKYAGVVNDIAFLIENDDSFRKTKLFKFFFPKKSRSDGPTSHLLKRTLPAVRP 180

Query: 185 YLNYSVMQYLLNTKNKMHFDLVRVLNHFVAPGIREYVLTW-----------------LFF 244
            LNYSVMQYLLNTKNKMHFD V VLNHFVAPG+ E                       FF
Sbjct: 181 SLNYSVMQYLLNTKNKMHFDPVVVLNHFVAPGVAEPSTMGGANAQERSLDKRIRSRIAFF 240

Query: 245 VESSTSEKKCLAEPRKRLTHFIPQANDLRFAGTTKTTISLFPFFGATFFFP 279
           VESSTS+KKCLAE +KRLTHFI QANDLRFAGTTKTTISLFPFFGATFFFP
Sbjct: 241 VESSTSDKKCLAEAKKRLTHFIRQANDLRFAGTTKTTISLFPFFGATFFFP 290

The following BLAST results are available for this feature:

BLAST of CmoCh00G000830 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RT03_PETHY	1.8e-126	79.32	Ribosomal protein S3, mitochondrial OS=Petunia hybrida GN=YRPS3 PE=2 SV=1	[more]
RT03_OENBE	3.4e-120	76.27	Ribosomal protein S3, mitochondrial OS=Oenothera berteroana GN=RPS3 PE=3 SV=2	[more]
RT03_MAIZE	1.3e-119	76.79	Ribosomal protein S3, mitochondrial OS=Zea mays GN=RPS3 PE=3 SV=1	[more]
RT03_ARATH	8.9e-113	73.56	Ribosomal protein S3, mitochondrial OS=Arabidopsis thaliana GN=RPS3 PE=2 SV=3	[more]
RT03_BRANA	9.2e-110	72.30	Ribosomal protein S3, mitochondrial OS=Brassica napus GN=RPS3 PE=3 SV=1	[more]

BLAST of CmoCh00G000830 vs. TrEMBL


Match Name	E-value	Identity	Description
D5I3F1_CUCPE	5.6e-138	85.76	Ribosomal protein S3 OS=Cucurbita pepo GN=rps3 PE=3 SV=1	[more]
E5DM03_CUCPE	7.3e-138	86.94	Ribosomal protein S3 (Fragment) OS=Cucurbita pepo GN=rps3 PE=3 SV=1	[more]
D5I3A1_CITLA	1.2e-127	81.36	Ribosomal protein S3 OS=Citrullus lanatus GN=rps3 PE=3 SV=1	[more]
I3NUP7_9ASTE	3.7e-126	80.34	Ribosomal protein S3 (Fragment) OS=Vahlia capensis GN=rps3 PE=3 SV=1	[more]
E5DM74_IXEBR	8.3e-126	81.44	Ribosomal protein S3 (Fragment) OS=Ixerba brexioides GN=rps3 PE=3 SV=1	[more]

BLAST of CmoCh00G000830 vs. TAIR10


Match Name	E-value	Identity	Description
ATMG00090.1	2.0e-115	74.24	ATMG00090.1 structural constituent of ribosome;protein binding	[more]

BLAST of CmoCh00G000830 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|295311706\|ref\|YP_003587365.1\|	8.0e-138	85.76	ribosomal protein S3 [Cucurbita pepo]	[more]
gi\|302748681\|gb\|ADL63821.1\|	1.0e-137	86.94	ribosomal protein S3, partial (mitochondrion) [Cucurbita pepo]	[more]
gi\|295311662\|ref\|YP_003587231.1\|	1.7e-127	81.36	ribosomal protein S3 [Citrullus lanatus]	[more]
gi\|335060254\|gb\|AEH27421.1\|	5.4e-126	80.34	ribosomal protein S3, partial (mitochondrion) [Vahlia capensis]	[more]
gi\|302748824\|gb\|ADL63892.1\|	1.2e-125	81.44	ribosomal protein S3, partial (mitochondrion) [Ixerba brexioides]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh00G000830.1	CmoCh00G000830.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35928	FAMILY NOT NAMED	coord: 53..265 score: 2.4
None	No IPR available	PANTHER	PTHR35928:SF1	SUBFAMILY NOT NAMED	coord: 53..265 score: 2.4

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh00G000830	Cucurbita maxima (Rimu)	cmacmoB000
CmoCh00G000830	Cucurbita maxima (Rimu)	cmacmoB001