CmoCh00G000820 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh00G000820
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Transport membrane protein
Location	Cmo_Chr00 : 17167955 .. 17168971 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

GCACGATTGACTTTGCACGCTCCATCCTTCGGCCCTTCGCCTATCAGCTTGGCAGGCAAGCTAGCTGGATCCGTCTCTGGTTTCGATTCGTTATGCTCAGCACCTCCAACAATCTCGTCAGTCTCTTGCCGCCTAAAACTCTGCCAATCAAGCGCTGCTTTACGTTTCATCCCGTGTGCCCAGAGAATGCTATGTGTTCTCCACTTTCGGACCTCTCAAAGAGAGAACGTGTTTTTTCCTCTGACTTTCTCTCTCATTCGCGGAGCGAAGAAAGCCAGCTTTGCCCCAGCAACCGCTATCCTTGGGAAACCTAAAGAGCTACCGAAGGAAAGGGATGCAGTCTCTCCCTTGGTTTTTTTAGAGGAGAAGGCAGAGAAGAAAACGTCCTTAGCACAAGTTTTTTTGCTTCCTGCGCCCTTACTAGTAAAGGGGCTCTTCGAGCAAGGAGGAATCCTGGTAGGAAGGCCGACCACTACATAAGCCGCCATCTGTCCAGGAGAGAAGCAAGCTACCTTTCTTTGATCCACCTTCCCGGGCGTGGAAGAGAACAAAAATCTTCAATAGCATGCTCTTACTTCGTCTTTCCCTTAATAAGTCATCAAATTTGGTGCTTTTTGATCCCCAGTTGCTATGGAGAACAAAGGACGAAATACAATCGATTCCTCTATTTAAGTGGTTTTCGCTTCTCCTTATTCCTGTTCCTAAGTCTTCCCCGGGTAGTTCCCAATGTTTGGCACTTTCCATACTCCGTGGGTGCAACATCAACAAATTCGCTCATTCTCAAGTTACAACCTAAGATCTATGACCATATTATGTTAACTGTTCGTATTTCGTTCATTCTATCGGTATGCTCCCAAGTACCTGTAATTGTGATCTGTTTGCCAAAACTCAGGGGTCTTTCTATGGAAACCCTCACGAACAATCGTCATTTTTTGATGGTTTTTCCGCTTTTCACAGCATCTCTTTCCACACCTCCGGATATCTGGTGCCAAATCGTCGCCCGTTTCCTTATTTCTT

mRNA sequence

GCACGATTGACTTTGCACGCTCCATCCTTCGGCCCTTCGCCTATCAGCTTGGCAGGCAAGCTAGCTGGATCCGTCTCTGGTTTCGATTCGTTATGCTCAGCACCTCCAACAATCTCGTCAGTCTCTTGCCGCCTAAAACTCTGCCAATCAAGCGCTGCTTTACGTTTCATCCCGTGTGCCCAGAGAATGCTATGTGTTCTCCACTTTCGGACCTCTCAAAGAGAGAACGTGTTTTTTCCTCTGACTTTCTCTCTCATTCGCGGAGCGAAGAAAGCCAGCTTTGCCCCAGCAACCGCTATCCTTGGGAAACCTAAAGAGCTACCGAAGGAAAGGGATGCAGTCTCTCCCTTGTCATCAAATTTGGTGCTTTTTGATCCCCAGTTGCTATGGAGAACAAAGGACGAAATACAATCGATTCCTCTATTTAAGTGGTTTTCGCTTCTCCTTATTCCTTTACAACCTAAGATCTATGACCATATTATGTTAACTGTTCGTATTTCGTTCATTCTATCGGTATGCTCCCAAGTACCTGTAATTGTGATCTGTTTGCCAAAACTCAGGGGTCTTTCTATGGAAACCCTCACGAACAATCGTCATTTTTTGATGCATCTCTTTCCACACCTCCGGATATCTGGTGCCAAATCGTCGCCCGTTTCCTTATTTCTT

Coding sequence (CDS)

GCACGATTGACTTTGCACGCTCCATCCTTCGGCCCTTCGCCTATCAGCTTGGCAGGCAAGCTAGCTGGATCCGTCTCTGGTTTCGATTCGTTATGCTCAGCACCTCCAACAATCTCGTCAGTCTCTTGCCGCCTAAAACTCTGCCAATCAAGCGCTGCTTTACGTTTCATCCCGTGTGCCCAGAGAATGCTATGTGTTCTCCACTTTCGGACCTCTCAAAGAGAGAACGTGTTTTTTCCTCTGACTTTCTCTCTCATTCGCGGAGCGAAGAAAGCCAGCTTTGCCCCAGCAACCGCTATCCTTGGGAAACCTAAAGAGCTACCGAAGGAAAGGGATGCAGTCTCTCCCTTGTCATCAAATTTGGTGCTTTTTGATCCCCAGTTGCTATGGAGAACAAAGGACGAAATACAATCGATTCCTCTATTTAAGTGGTTTTCGCTTCTCCTTATTCCTTTACAACCTAAGATCTATGACCATATTATGTTAACTGTTCGTATTTCGTTCATTCTATCGGTATGCTCCCAAGTACCTGTAATTGTGATCTGTTTGCCAAAACTCAGGGGTCTTTCTATGGAAACCCTCACGAACAATCGTCATTTTTTGATGCATCTCTTTCCACACCTCCGGATATCTGGTGCCAAATCGTCGCCCGTTTCCTTATTTCTT

Homology

[Close]

BLAST of CmoCh00G000820 vs. Swiss-Prot
Match: YMF16_ARATH (Uncharacterized tatC-like protein ymf16 OS=Arabidopsis thaliana GN=YMF16 PE=2 SV=2)

HSP 1 Score: 86.3 bits (212), Expect = 4.7e-16
Identity = 45/55 (81.82%), Postives = 49/55 (89.09%), Query Frame = 1


Query: 148 LLIPLQPKIYDHIMLTVRISFILSVCSQVPVIVICLPKLRGLSMETLTNNRHFLM 203
           L+I LQPKIYD+IMLTVRISFI SVCSQVPVIVICL + RGLS+ET TNNR FLM
Sbjct: 152 LMIKLQPKIYDYIMLTVRISFISSVCSQVPVIVICLLEPRGLSLETFTNNRRFLM 206

[Close]

BLAST of CmoCh00G000820 vs. Swiss-Prot
Match: YMF16_MARPO (Uncharacterized tatC-like protein ymf16 OS=Marchantia polymorpha GN=YMF16 PE=3 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 8.6e-10
Identity = 35/60 (58.33%), Postives = 45/60 (75.00%), Query Frame = 1


Query: 146 SLLLIPLQPKIYDHIMLTVRISFILSVCSQVPVIVICLPKLRGLSMETLTNNRHFLMHLF 205
           +LL+I LQPKI+D+IMLTVRI FI S+CSQVPV+VICL + +G  ++T   NR F    F
Sbjct: 142 NLLIIKLQPKIFDYIMLTVRILFISSICSQVPVLVICLLESKG--VKTFIKNRRFFYSFF 199

[Close]

BLAST of CmoCh00G000820 vs. TrEMBL
Match: E5L021_9LILI (Transport membrane protein (Fragment) OS=Phyllospadix scouleri GN=mttB PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 5.0e-17
Identity = 54/74 (72.97%), Postives = 62/74 (83.78%), Query Frame = 1


Query: 148 LLIPLQPKIYDHIMLTVRISFILSVCSQVPVIVICLPKLRGLSMETLTNNRHFLMHLFPH 207
           L+I LQPKIYDHIMLT+RISFI SVCSQVPVIVICLPK RGLS+ETLTNNR FLM +FP 
Sbjct: 114 LMIKLQPKIYDHIMLTLRISFIPSVCSQVPVIVICLPKPRGLSVETLTNNRRFLM-VFPL 173

Query: 208 LRISGAKSSPVSLF 222
           L  + A S+P  ++
Sbjct: 174 L--TAALSAPPDIW 184

[Close]

BLAST of CmoCh00G000820 vs. TrEMBL
Match: E5L011_9LILI (Transport membrane protein (Fragment) OS=Zostera tasmanica GN=mttB PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 5.0e-17
Identity = 54/74 (72.97%), Postives = 62/74 (83.78%), Query Frame = 1


Query: 148 LLIPLQPKIYDHIMLTVRISFILSVCSQVPVIVICLPKLRGLSMETLTNNRHFLMHLFPH 207
           L+I LQPKIYDHIMLT+RISFI SVCSQVPVIVICLPK RGLS+ETLTNNR FLM +FP 
Sbjct: 114 LMIKLQPKIYDHIMLTLRISFIPSVCSQVPVIVICLPKPRGLSVETLTNNRRFLM-VFPL 173

Query: 208 LRISGAKSSPVSLF 222
           L  + A S+P  ++
Sbjct: 174 L--TAALSAPPDIW 184

[Close]

BLAST of CmoCh00G000820 vs. TrEMBL
Match: E9KZL5_VIGRA (Transport membrane protein OS=Vigna radiata GN=mttB PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 6.6e-17
Identity = 54/74 (72.97%), Postives = 62/74 (83.78%), Query Frame = 1


Query: 148 LLIPLQPKIYDHIMLTVRISFILSVCSQVPVIVICLPKLRGLSMETLTNNRHFLMHLFPH 207
           L+I LQPKIYDHIMLTVRISFI SVCSQVPVIVICLP+ RGLS+ETLTNNR FLM +FP 
Sbjct: 137 LMIKLQPKIYDHIMLTVRISFIPSVCSQVPVIVICLPEPRGLSVETLTNNRRFLM-VFPL 196

Query: 208 LRISGAKSSPVSLF 222
           L  + A S+P  ++
Sbjct: 197 L--TAALSTPPDIW 207

[Close]

BLAST of CmoCh00G000820 vs. TrEMBL
Match: A0A0K9NYQ1_ZOSMR (Uncharacterized protein OS=Zostera marina GN=ZOSMA_54G00040 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 1.1e-16
Identity = 53/73 (72.60%), Postives = 61/73 (83.56%), Query Frame = 1


Query: 149 LIPLQPKIYDHIMLTVRISFILSVCSQVPVIVICLPKLRGLSMETLTNNRHFLMHLFPHL 208
           +I LQPKIYDHIMLT+RISFI SVCSQVPVIVICLPK RGLS+ETLTNNR FLM +FP L
Sbjct: 1   MIKLQPKIYDHIMLTLRISFIPSVCSQVPVIVICLPKPRGLSVETLTNNRRFLM-VFPLL 60

Query: 209 RISGAKSSPVSLF 222
             + A S+P  ++
Sbjct: 61  --TAALSAPPDIW 70

[Close]

BLAST of CmoCh00G000820 vs. TrEMBL
Match: A0A088BEV3_ERUSA (TatC OS=Eruca sativa GN=tatC PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 1.5e-16
Identity = 53/74 (71.62%), Postives = 61/74 (82.43%), Query Frame = 1


Query: 148 LLIPLQPKIYDHIMLTVRISFILSVCSQVPVIVICLPKLRGLSMETLTNNRHFLMHLFPH 207
           L+I LQPKIYDHIMLTVRISFI SVCSQVPVIVICLP+ RGLS+ET TNNR FLM +FP 
Sbjct: 150 LMIKLQPKIYDHIMLTVRISFIPSVCSQVPVIVICLPEPRGLSLETFTNNRRFLM-VFPL 209

Query: 208 LRISGAKSSPVSLF 222
           L  + A S+P  ++
Sbjct: 210 L--TAALSTPPDIW 220

[Close]

BLAST of CmoCh00G000820 vs. TAIR10
Match: ATMG00570.1 (ATMG00570.1 Sec-independent periplasmic protein translocase)

HSP 1 Score: 94.7 bits (234), Expect = 7.4e-20
Identity = 53/74 (71.62%), Postives = 61/74 (82.43%), Query Frame = 1


Query: 148 LLIPLQPKIYDHIMLTVRISFILSVCSQVPVIVICLPKLRGLSMETLTNNRHFLMHLFPH 207
           L+I LQPKIYDHIMLTVRISFI SVCSQVPVIVICLP+ RGLS+ET TNNR FLM +FP 
Sbjct: 158 LMIKLQPKIYDHIMLTVRISFIPSVCSQVPVIVICLPEPRGLSLETFTNNRRFLM-VFPL 217

Query: 208 LRISGAKSSPVSLF 222
           L  + A S+P  ++
Sbjct: 218 L--TAALSTPPDIW 228

[Close]

BLAST of CmoCh00G000820 vs. NCBI nr
Match: gi|312145346|gb|ADQ28416.1| (transport membrane protein, partial (mitochondrion) [Phyllospadix scouleri])

HSP 1 Score: 96.3 bits (238), Expect = 7.2e-17
Identity = 54/74 (72.97%), Postives = 62/74 (83.78%), Query Frame = 1


Query: 148 LLIPLQPKIYDHIMLTVRISFILSVCSQVPVIVICLPKLRGLSMETLTNNRHFLMHLFPH 207
           L+I LQPKIYDHIMLT+RISFI SVCSQVPVIVICLPK RGLS+ETLTNNR FLM +FP 
Sbjct: 114 LMIKLQPKIYDHIMLTLRISFIPSVCSQVPVIVICLPKPRGLSVETLTNNRRFLM-VFPL 173

Query: 208 LRISGAKSSPVSLF 222
           L  + A S+P  ++
Sbjct: 174 L--TAALSAPPDIW 184

[Close]

BLAST of CmoCh00G000820 vs. NCBI nr
Match: gi|312145326|gb|ADQ28406.1| (transport membrane protein, partial (mitochondrion) [Zostera tasmanica])

HSP 1 Score: 96.3 bits (238), Expect = 7.2e-17
Identity = 54/74 (72.97%), Postives = 62/74 (83.78%), Query Frame = 1


Query: 148 LLIPLQPKIYDHIMLTVRISFILSVCSQVPVIVICLPKLRGLSMETLTNNRHFLMHLFPH 207
           L+I LQPKIYDHIMLT+RISFI SVCSQVPVIVICLPK RGLS+ETLTNNR FLM +FP 
Sbjct: 114 LMIKLQPKIYDHIMLTLRISFIPSVCSQVPVIVICLPKPRGLSVETLTNNRRFLM-VFPL 173

Query: 208 LRISGAKSSPVSLF 222
           L  + A S+P  ++
Sbjct: 174 L--TAALSAPPDIW 184

[Close]

BLAST of CmoCh00G000820 vs. NCBI nr
Match: gi|323149031|ref|YP_004222808.1| (transport membrane protein [Vigna radiata])

HSP 1 Score: 95.9 bits (237), Expect = 9.5e-17
Identity = 54/74 (72.97%), Postives = 62/74 (83.78%), Query Frame = 1


Query: 148 LLIPLQPKIYDHIMLTVRISFILSVCSQVPVIVICLPKLRGLSMETLTNNRHFLMHLFPH 207
           L+I LQPKIYDHIMLTVRISFI SVCSQVPVIVICLP+ RGLS+ETLTNNR FLM +FP 
Sbjct: 137 LMIKLQPKIYDHIMLTVRISFIPSVCSQVPVIVICLPEPRGLSVETLTNNRRFLM-VFPL 196

Query: 208 LRISGAKSSPVSLF 222
           L  + A S+P  ++
Sbjct: 197 L--TAALSTPPDIW 207

[Close]

BLAST of CmoCh00G000820 vs. NCBI nr
Match: gi|901801041|gb|KMZ61075.1| (hypothetical protein ZOSMA_54G00040 [Zostera marina])

HSP 1 Score: 95.1 bits (235), Expect = 1.6e-16
Identity = 53/73 (72.60%), Postives = 61/73 (83.56%), Query Frame = 1


Query: 149 LIPLQPKIYDHIMLTVRISFILSVCSQVPVIVICLPKLRGLSMETLTNNRHFLMHLFPHL 208
           +I LQPKIYDHIMLT+RISFI SVCSQVPVIVICLPK RGLS+ETLTNNR FLM +FP L
Sbjct: 1   MIKLQPKIYDHIMLTLRISFIPSVCSQVPVIVICLPKPRGLSVETLTNNRRFLM-VFPLL 60

Query: 209 RISGAKSSPVSLF 222
             + A S+P  ++
Sbjct: 61  --TAALSAPPDIW 70

[Close]

BLAST of CmoCh00G000820 vs. NCBI nr
Match: gi|153799830|gb|ABS50646.1| (orfX [Arabidopsis thaliana])

HSP 1 Score: 94.7 bits (234), Expect = 2.1e-16
Identity = 53/74 (71.62%), Postives = 61/74 (82.43%), Query Frame = 1


Query: 148 LLIPLQPKIYDHIMLTVRISFILSVCSQVPVIVICLPKLRGLSMETLTNNRHFLMHLFPH 207
           L+I LQPKIYDHIMLTVRISFI SVCSQVPVIVICLP+ RGLS+ET TNNR FLM +FP 
Sbjct: 142 LMIKLQPKIYDHIMLTVRISFIPSVCSQVPVIVICLPEPRGLSLETFTNNRRFLM-VFPL 201

Query: 208 LRISGAKSSPVSLF 222
           L  + A S+P  ++
Sbjct: 202 L--TAALSTPPDIW 212

The following BLAST results are available for this feature:

BLAST of CmoCh00G000820 vs. Swiss-Prot


Match Name	E-value	Identity	Description
YMF16_ARATH	4.7e-16	81.82	Uncharacterized tatC-like protein ymf16 OS=Arabidopsis thaliana GN=YMF16 PE=2 SV...	[more]
YMF16_MARPO	8.6e-10	58.33	Uncharacterized tatC-like protein ymf16 OS=Marchantia polymorpha GN=YMF16 PE=3 S...	[more]

BLAST of CmoCh00G000820 vs. TrEMBL


Match Name	E-value	Identity	Description
E5L021_9LILI	5.0e-17	72.97	Transport membrane protein (Fragment) OS=Phyllospadix scouleri GN=mttB PE=4 SV=1	[more]
E5L011_9LILI	5.0e-17	72.97	Transport membrane protein (Fragment) OS=Zostera tasmanica GN=mttB PE=4 SV=1	[more]
E9KZL5_VIGRA	6.6e-17	72.97	Transport membrane protein OS=Vigna radiata GN=mttB PE=4 SV=1	[more]
A0A0K9NYQ1_ZOSMR	1.1e-16	72.60	Uncharacterized protein OS=Zostera marina GN=ZOSMA_54G00040 PE=4 SV=1	[more]
A0A088BEV3_ERUSA	1.5e-16	71.62	TatC OS=Eruca sativa GN=tatC PE=4 SV=1	[more]

BLAST of CmoCh00G000820 vs. TAIR10


Match Name	E-value	Identity	Description
ATMG00570.1	7.4e-20	71.62	ATMG00570.1 Sec-independent periplasmic protein translocase	[more]

BLAST of CmoCh00G000820 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|312145346\|gb\|ADQ28416.1\|	7.2e-17	72.97	transport membrane protein, partial (mitochondrion) [Phyllospadix scouleri]	[more]
gi\|312145326\|gb\|ADQ28406.1\|	7.2e-17	72.97	transport membrane protein, partial (mitochondrion) [Zostera tasmanica]	[more]
gi\|323149031\|ref\|YP_004222808.1\|	9.5e-17	72.97	transport membrane protein [Vigna radiata]	[more]
gi\|901801041\|gb\|KMZ61075.1\|	1.6e-16	72.60	hypothetical protein ZOSMA_54G00040 [Zostera marina]	[more]
gi\|153799830\|gb\|ABS50646.1\|	2.1e-16	71.62	orfX [Arabidopsis thaliana]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005739	mitochondrion
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh00G000820.1	CmoCh00G000820.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh00G000820	Cucurbita maxima (Rimu)	cmacmoB000
CmoCh00G000820	Cucurbita maxima (Rimu)	cmacmoB001