CmaCh20G010160 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh20G010160
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionRNA-binding protein
LocationCma_Chr20 : 6816837 .. 6819089 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TCCACTCTCCCTTTCATTATCCAACGGTTCATATACAAGCTTTTAGCTTCTACTTAAATCGCTCTTCCAATCATTCGGCTGTCATAAAACCCTGCTCGAATTCAAGGCCTAGGGTTTAAGCTCGACTGTGAAAGAAGCGAAGAGAGCCAACAAAGGTTCTATCTGCACGTCCGATTCCTTGTTCCTTTCCTTTCCTTTCCTTTCGTTGTTTTGTAATGTTGTTCATCTTCATTCTCATGTTTCTGTATTTTTTTTTTTTACTTTTTGTTCTATATTTTGACTGATGTGTTTTGTTTTTAGATCTTTTGTCTTTCTGTGGTGATTTTTTATGAGTCTGTTAAACGTAAAATAGACCATATCTAGTGATTTACTGGTTTTGTTACCAAATCTGTGATTTACTGGTTTTGTTACCAAATCTGTGATTTACTGGTTTTGTTACCAAATCTGTGATCTACTGGTTTTGTTACCAAATCTGTGATCTACTGGTTTTGTTACCAAATCTGTGATCTACTGGTTTTGTTACCAAATCTGTGATCTACTGGTTTTGTTACAAAATCTGTGATCTACTGGTTATGTTACCAAATCTGTGATTATGTGATTTTCTGGTTTTGTTACCAAATATGTGATTATGTGATTTTCTGGTTATGTTACTAAATCTGTGATTTTGAATTAATCTTCATTAATCTTGATTCAACTAGTTTAGAAGAAATACAAAGATTGTTCTCCTCTCTGAACTTAGATATGATGTGATTGGAAGTTTTCTTTCATTTTTCTTTTGTGTTGTGTCTTTTTGATTTCGACATGTAAGGCTTCTTTAATGTTCCGGGTATATATGTTCTGGTTAAGAATGATTCTGATTCTGATTGTGATCCAGCGTTCTTTTGCTCTGGTTGAGACTGTTTGAATTTGATACAAACCAAAAGCTTTCTTTTCGATTATGGAGTCGATGTACATTGAAAGTTCTAAATATTTGTAGCACAGTGTCATCTTGCACAACTACCTTTTGTTCCCTCTGGAGTTTTACTTATTCATTTGGTTAATACTCGTTTCAGGTCGTCAACATGGCTTTTCTTAGCAAAGTTGGAAAGGTATTTAGGAAGAGTTCTGCATCAATGATCCGTTCGGATTTGCAACCTTCCAAACTGTCTATCTTTCAAAGTATTAGATTAATGTCAAGTTCGAAAGTTTTTGTTGGAGGTAAGCTAGAATTCCCGTTCTTCTGTTCTTTCTTACACCTTGGTGGTCTATTAAGACTTTACCTGAGATCCGTTGCTTTGTTTTGCAGGCCTTTCTTATGGTACTGATGACCAGAGTCTGAGGGAAGCGTTCGACAAGTATGGGGAAGTAGTTGAAGGTGTGCAGGAAACTAATCTAATTAACCATTTTTTTTATTTAAAAAAACCTACTTTTATTTGCTAGGGTACATACACACTGCTGCCCATCATCTGTATACGGAAAATTGAAATTATATTTAGTCTTTCTGTGAAATCAGTAATATTCGAGGGCACTTCCTCTAGCCGGTGAATGACTCTGATTTTTATGTATGTCTACCTTTGTCTTAGCGAGAGTGATAACGGATCGTGATACCGGAAGATCCAGAGGTTTTGGGTTTGTTACTTTCACCGCGAACGAGGAGGCTTCCAGTGCTATCCAAGCGCTGGATGGACAGGTAAACGAATTTATGTTATGGGGGGCTTTTGTGGTAGTGTTGACTCCACGGATCAGTGTGGCTTTGCCATCAGTTTATTTAAACCACCAGGGGTTCCAGTTGATTCTGTTGTGGGTCAGTAATATCTTTACTGTTTTCTCTTACATTGTTCATTTTTTGTAATCAGGATCTCCATGGGCGCAACATTAGAGTGAACTTCGCGACTGAAAGGTCTCGTGGTGGTGGTTATGACGGCGGCAGTTCCGGCTACAATCGCTCCAGTTCATACCAGGGAGGAGGTGGTTACAATGACTGATGACTTTGCCTAAAGGTACTGGGGAGAAACTGCTTGATTCATTTGGAAACAAATTGCTCCTAGTGTAACGTCTTATGACTCCTTGTATTGCCGAATTATAAGCCTTGCGTTGTTTTTTTTTTATTTTTATGTTTTTTTAATCTTAATAAGAGAATATCGTTTAAACGTAGAATAGATCATATTTGTATAGTAAGATGATTCTGGTTTGTTATCAAATCTATGATTACTAGTTACTGGTTTGTTATCAAATCTATGATTATTGGTTACTGGTTTGTTATCGAATCTATGA

mRNA sequence

TCCACTCTCCCTTTCATTATCCAACGGTTCATATACAAGCTTTTAGCTTCTACTTAAATCGCTCTTCCAATCATTCGGCTGTCATAAAACCCTGCTCGAATTCAAGGCCTAGGGTTTAAGCTCGACTGTGAAAGAAGCGAAGAGAGCCAACAAAGGTCGTCAACATGGCTTTTCTTAGCAAAGTTGGAAAGGTATTTAGGAAGAGTTCTGCATCAATGATCCGTTCGGATTTGCAACCTTCCAAACTGTCTATCTTTCAAAGTATTAGATTAATGTCAAGTTCGAAAGTTTTTGTTGGAGGCCTTTCTTATGGTACTGATGACCAGAGTCTGAGGGAAGCGTTCGACAAGTATGGGGAAGTAGTTGAAGCGAGAGTGATAACGGATCGTGATACCGGAAGATCCAGAGGTTTTGGGTTTGTTACTTTCACCGCGAACGAGGAGGCTTCCAGTGCTATCCAAGCGCTGGATGGACAGGATCTCCATGGGCGCAACATTAGAGTGAACTTCGCGACTGAAAGGTCTCGTGGTGGTGGTTATGACGGCGGCAGTTCCGGCTACAATCGCTCCAGTTCATACCAGGGAGGAGGTGGTTACAATGACTGATGACTTTGCCTAAAGGTACTGGGGAGAAACTGCTTGATTCATTTGGAAACAAATTGCTCCTAGTGTAACGTCTTATGACTCCTTGTATTGCCGAATTATAAGCCTTGCGTTGTTTTTTTTTTATTTTTATGTTTTTTTAATCTTAATAAGAGAATATCGTTTAAACGTAGAATAGATCATATTTGTATAGTAAGATGATTCTGGTTTGTTATCAAATCTATGATTACTAGTTACTGGTTTGTTATCAAATCTATGATTATTGGTTACTGGTTTGTTATCGAATCTATGA

Coding sequence (CDS)

ATGGCTTTTCTTAGCAAAGTTGGAAAGGTATTTAGGAAGAGTTCTGCATCAATGATCCGTTCGGATTTGCAACCTTCCAAACTGTCTATCTTTCAAAGTATTAGATTAATGTCAAGTTCGAAAGTTTTTGTTGGAGGCCTTTCTTATGGTACTGATGACCAGAGTCTGAGGGAAGCGTTCGACAAGTATGGGGAAGTAGTTGAAGCGAGAGTGATAACGGATCGTGATACCGGAAGATCCAGAGGTTTTGGGTTTGTTACTTTCACCGCGAACGAGGAGGCTTCCAGTGCTATCCAAGCGCTGGATGGACAGGATCTCCATGGGCGCAACATTAGAGTGAACTTCGCGACTGAAAGGTCTCGTGGTGGTGGTTATGACGGCGGCAGTTCCGGCTACAATCGCTCCAGTTCATACCAGGGAGGAGGTGGTTACAATGACTGA

Protein sequence

MAFLSKVGKVFRKSSASMIRSDLQPSKLSIFQSIRLMSSSKVFVGGLSYGTDDQSLREAFDKYGEVVEARVITDRDTGRSRGFGFVTFTANEEASSAIQALDGQDLHGRNIRVNFATERSRGGGYDGGSSGYNRSSSYQGGGGYND
Homology
[Close]
BLAST of CmaCh20G010160 vs. Swiss-Prot
Match: RBG3_ARATH (Glycine-rich RNA-binding protein 3, mitochondrial OS=Arabidopsis thaliana GN=RBG3 PE=2 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 6.8e-40
Identity = 88/150 (58.67%), Postives = 113/150 (75.33%), Query Frame = 1 

Query: 1   MAFLSKVGKVFRKSSASMIRSDLQPSKLSIFQSIRLMSSSKVFVGGLSYGTDDQSLREAF 60
           MAFLSK G + ++++   + + +  S  S+FQ+IR MSSSK+F+GG++Y  D+ SLREAF
Sbjct: 1   MAFLSKFGNILKQTTNKQLNAQVSLSSPSLFQAIRCMSSSKLFIGGMAYSMDEDSLREAF 60

Query: 61  DKYGEVVEARVITDRDTGRSRGFGFVTFTANEEASSAIQALDGQDLHGRNIRVNFATERS 120
            KYGEVV+ RVI DR+TGRSRGFGFVTFT++E ASSAIQALDG+DLHGR ++VN+A +R+
Sbjct: 61  TKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQALDGRDLHGRVVKVNYANDRT 120

Query: 121 R-----GGGYDGGSSGYNRSSSYQGG-GGY 145
                 GGGY GG  GY  S  Y GG GGY
Sbjct: 121 SGGGFGGGGYGGGGGGYGGSGGYGGGAGGY 150

[Close]
BLAST of CmaCh20G010160 vs. Swiss-Prot
Match: RBG5_ARATH (Glycine-rich RNA-binding protein 5, mitochondrial OS=Arabidopsis thaliana GN=RBG5 PE=2 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 8.3e-38
Identity = 95/172 (55.23%), Postives = 115/172 (66.86%), Query Frame = 1 

Query: 1   MAFLSKVGKVFRKSSASMIRSDLQPSKLSIFQSIRLMSSSKVFVGGLSYGTDDQSLREAF 60
           MAFLSKVG++F ++S+ +  S       S+ QSIR MSSSK+FVGG+SY TD+  LREAF
Sbjct: 1   MAFLSKVGRLFSQTSSHVTASS------SMLQSIRCMSSSKIFVGGISYSTDEFGLREAF 60

Query: 61  DKYGEVVEARVITDRDTGRSRGFGFVTFTANEEASSAIQALDGQDLHGRNIRVNFATERS 120
            KYGEVV+A++I DR+TGRSRGF FVTFT+ EEAS+A+Q LDGQDLHGR IRVN+ATER 
Sbjct: 61  SKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAMQ-LDGQDLHGRRIRVNYATERG 120

Query: 121 RG------------------------GGYDGGSSGYNRSSSYQ----GGGGY 145
            G                        GGY GG+ GY  +SSY     GGGGY
Sbjct: 121 SGFGGRGFGGPGGGYGASDGGYGAPAGGYGGGAGGYGGNSSYSGNAGGGGGY 165

[Close]
BLAST of CmaCh20G010160 vs. Swiss-Prot
Match: RBG2_ARATH (Glycine-rich RNA-binding protein 2, mitochondrial OS=Arabidopsis thaliana GN=RBG2 PE=1 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 3.9e-27
Identity = 74/150 (49.33%), Postives = 100/150 (66.67%), Query Frame = 1 

Query: 1   MAFLSKVGKVFRKSSASMIRSDLQPSKLSIFQSIRLMSSSKVFVGGLSYGTDDQSLREAF 60
           MAF +K+G + R++    I S+      S+  S+RLMS+ K+F+GGLS+GTDD SLR+AF
Sbjct: 1   MAFCNKLGGLLRQN----ISSNGNVPVTSMLGSLRLMST-KLFIGGLSWGTDDASLRDAF 60

Query: 61  DKYGEVVEARVITDRDTGRSRGFGFVTFTANEEASSAIQALDGQDLHGRNIRVNFATER- 120
             +G+VV+A+VI DR+TGRSRGFGFV F     A++AI  +DG++L+GR+IRVN A +R 
Sbjct: 61  AHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPANDRP 120

Query: 121 ------SRGGGYDGGSSGYNRSSSYQGGGG 144
                   GGGY GG  GY       GGGG
Sbjct: 121 SAPRAYGGGGGYSGGGGGYGGGGGGYGGGG 145

[Close]
BLAST of CmaCh20G010160 vs. Swiss-Prot
Match: RBG4_ARATH (Glycine-rich RNA-binding protein 4, mitochondrial OS=Arabidopsis thaliana GN=RBG4 PE=2 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 1.1e-26
Identity = 74/152 (48.68%), Postives = 98/152 (64.47%), Query Frame = 1 

Query: 1   MAFLSKVGKVFRKSSASMIRSDLQPSKLSIFQSIRLMSSSKVFVGGLSYGTDDQSLREAF 60
           MAF +K+  + R+  +      +     S+  S+R MSS K+FVGGLS+GTDD SL++AF
Sbjct: 1   MAFCNKLSGILRQGVSQSSNGPVT----SMLGSLRYMSS-KLFVGGLSWGTDDSSLKQAF 60

Query: 61  DKYGEVVEARVITDRDTGRSRGFGFVTFTANEEASSAIQALDGQDLHGRNIRVNFATERS 120
             +GEV EA VI DR+TGRSRGFGFV+F+  + A++AI+ +DG++L+GR IRVN ATERS
Sbjct: 61  TSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKEMDGKELNGRQIRVNLATERS 120

Query: 121 R--------GGGYDGGSSGYNRSSSYQGGGGY 145
                    GGGY GG           GGGGY
Sbjct: 121 SAPRSSFGGGGGYGGG-----------GGGGY 136

[Close]
BLAST of CmaCh20G010160 vs. Swiss-Prot
Match: GRP_HORVU (Glycine-rich RNA-binding protein blt801 OS=Hordeum vulgare GN=blt801 PE=1 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 9.6e-26
Identity = 61/106 (57.55%), Postives = 77/106 (72.64%), Query Frame = 1 

Query: 41  KVFVGGLSYGTDDQSLREAFDKYGEVVEARVITDRDTGRSRGFGFVTFTANEEASSAIQA 100
           + FVGGL + TDDQSL+ AF KYG+V+++++ITDR+TGRSRGFGFVTF ++E    AI+A
Sbjct: 7   RCFVGGLRWATDDQSLQNAFSKYGDVIDSKIITDRETGRSRGFGFVTFASDEAMRQAIEA 66

Query: 101 LDGQDLHGRNIRVNFATER--SRGGGYDGGSSGYNRSSSYQGGGGY 145
           ++GQDL GRNI VN A  R    GGG+ GG  GY       GGGGY
Sbjct: 67  MNGQDLDGRNITVNEAQSRRSDGGGGFGGGGGGYGGQRREGGGGGY 112

[Close]
BLAST of CmaCh20G010160 vs. TrEMBL
Match: A0A0A0LQL8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G039190 PE=4 SV=1)

HSP 1 Score: 194.5 bits (493), Expect = 8.9e-47
Identity = 108/144 (75.00%), Postives = 119/144 (82.64%), Query Frame = 1 

Query: 1   MAFLSKVGKVFRKSSASMIRSDLQPSKLSIFQSIRLMSSSKVFVGGLSYGTDDQSLREAF 60
           MAFLSKVGK+F +SSAS IRS  QPS LS+FQ++R MSSSKVFVGGLSYGTDDQ L EAF
Sbjct: 1   MAFLSKVGKIFSQSSASGIRSHFQPSNLSVFQTLRFMSSSKVFVGGLSYGTDDQRLTEAF 60

Query: 61  DKYGEVVEARVITDRDTGRSRGFGFVTFTANEEASSAIQALDGQDLHGRNIRVNFATERS 120
            KYGEVVEARVI DRDTGRSRGFGFVTF A+E+ASSAIQALDGQDL GR IR ++AT+R+
Sbjct: 61  TKYGEVVEARVIMDRDTGRSRGFGFVTFGASEDASSAIQALDGQDLDGRRIRCSYATDRA 120

Query: 121 RGGGYDGGSSGYNRSSSYQGGGGY 145
            GGG  GG  GY     Y GGGGY
Sbjct: 121 SGGG--GGGGGYGGGGGY-GGGGY 141

[Close]
BLAST of CmaCh20G010160 vs. TrEMBL
Match: M5WAA2_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010113mg PE=4 SV=1)

HSP 1 Score: 184.1 bits (466), Expect = 1.2e-43
Identity = 96/150 (64.00%), Postives = 121/150 (80.67%), Query Frame = 1 

Query: 1   MAFLSKVGKVFRKSSASMIRSDLQPSKLSIFQSIRLMS---SSKVFVGGLSYGTDDQSLR 60
           MAFLSK+G + R+++   IRS+L P KLSI Q++R MS   SSK+F+GG+SY TD+QSLR
Sbjct: 1   MAFLSKIGNILRQTANKQIRSELSPFKLSIHQAVRCMSSMASSKLFIGGISYQTDEQSLR 60

Query: 61  EAFDKYGEVVEARVITDRDTGRSRGFGFVTFTANEEASSAIQALDGQDLHGRNIRVNFAT 120
           EAF KYGEV++AR+I+DR+TGRSRGFGF+TFT++EEASSAIQALDGQ+LHGR +RVN+AT
Sbjct: 61  EAFAKYGEVIDARIISDRETGRSRGFGFITFTSSEEASSAIQALDGQELHGRRVRVNYAT 120

Query: 121 ERSR----GGGYDGGSSGYNRSSSYQGGGG 144
           +R R     GGY+GG  GY     Y GGGG
Sbjct: 121 DRPRPNFGDGGYNGGGGGYGGGGGYGGGGG 150

[Close]
BLAST of CmaCh20G010160 vs. TrEMBL
Match: F6GSZ1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_17s0000g07330 PE=4 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 4.6e-43
Identity = 95/144 (65.97%), Postives = 113/144 (78.47%), Query Frame = 1 

Query: 1   MAFLSKVGKVFRKSSASMIRSDLQPSKLSIFQSIRLMSSSKVFVGGLSYGTDDQSLREAF 60
           MAF  KVG + R++ +  + S    S  SI+Q+IR MSSSK+F+GGLSY TDD SLREAF
Sbjct: 1   MAFFGKVGNILRQTVSKQVNSQFSVSNPSIYQAIRCMSSSKLFIGGLSYSTDDTSLREAF 60

Query: 61  DKYGEVVEARVITDRDTGRSRGFGFVTFTANEEASSAIQALDGQDLHGRNIRVNFATERS 120
            KYGEV+EARVI DR+TGRSRGFGFVTFT++EEASSAIQALDGQDLHGR +RVN+AT+R+
Sbjct: 61  HKYGEVIEARVIVDRETGRSRGFGFVTFTSSEEASSAIQALDGQDLHGRRVRVNYATDRA 120

Query: 121 RGGGYDGGSSGYNRSSSYQGGGGY 145
           R GG+ GG  GY       GGGGY
Sbjct: 121 RSGGF-GGGGGYGGGGGGYGGGGY 143

[Close]
BLAST of CmaCh20G010160 vs. TrEMBL
Match: A5B074_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_038162 PE=4 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 7.8e-43
Identity = 95/144 (65.97%), Postives = 113/144 (78.47%), Query Frame = 1 

Query: 1   MAFLSKVGKVFRKSSASMIRSDLQPSKLSIFQSIRLMSSSKVFVGGLSYGTDDQSLREAF 60
           MAF  KVG + R++ +  + S    S  SI+Q+IR MSSSK+F+GGLSY TDD SLREAF
Sbjct: 1   MAFFGKVGNILRQTVSKQVNSQFSVSNPSIYQAIRCMSSSKLFIGGLSYSTDDTSLREAF 60

Query: 61  DKYGEVVEARVITDRDTGRSRGFGFVTFTANEEASSAIQALDGQDLHGRNIRVNFATERS 120
            KYGEV+EARVI DR+TGRSRGFGFVTFT++EEASSAIQALDGQDLHGR +RVN+AT+R+
Sbjct: 61  YKYGEVIEARVIVDRETGRSRGFGFVTFTSSEEASSAIQALDGQDLHGRRVRVNYATDRA 120

Query: 121 RGGGYDGGSSGYNRSSSYQGGGGY 145
           R GG+ GG  GY       GGGGY
Sbjct: 121 RSGGF-GGGGGYGGGGGGYGGGGY 143

[Close]
BLAST of CmaCh20G010160 vs. TrEMBL
Match: B9RLN6_RICCO (Glycine-rich RNA-binding protein, putative OS=Ricinus communis GN=RCOM_1469720 PE=4 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 5.1e-42
Identity = 96/152 (63.16%), Postives = 115/152 (75.66%), Query Frame = 1 

Query: 1   MAFLSKVGKVFRKSSASMIRSDLQPSKLSIFQSIRLMSSSKVFVGGLSYGTDDQSLREAF 60
           MAFLSKVG + R+++   I ++L  S+ S+FQ+IR MSSSKVFVGG+SY TDD SLREAF
Sbjct: 1   MAFLSKVGNLLRQTATKQISNELSASRPSMFQAIRFMSSSKVFVGGISYQTDDTSLREAF 60

Query: 61  DKYGEVVEARVITDRDTGRSRGFGFVTFTANEEASSAIQALDGQDLHGRNIRVNFATERS 120
            KYGEV+EARVI DR+TGRSRGF FVT+T++EEASSAIQALDGQDLHGR +RVN+A +R 
Sbjct: 61  GKYGEVIEARVIIDRETGRSRGFAFVTYTSSEEASSAIQALDGQDLHGRRVRVNYANDRP 120

Query: 121 R---------GGGYDGGSSGYNRSSSYQGGGG 144
           R         GGGY  G  GY+    Y  GGG
Sbjct: 121 RTSFGGGGYGGGGYGAGGGGYSSGGGYGAGGG 152

[Close]
BLAST of CmaCh20G010160 vs. TAIR10
Match: AT5G61030.1 (AT5G61030.1 glycine-rich RNA-binding protein 3)

HSP 1 Score: 164.9 bits (416), Expect = 3.8e-41
Identity = 88/150 (58.67%), Postives = 113/150 (75.33%), Query Frame = 1 

Query: 1   MAFLSKVGKVFRKSSASMIRSDLQPSKLSIFQSIRLMSSSKVFVGGLSYGTDDQSLREAF 60
           MAFLSK G + ++++   + + +  S  S+FQ+IR MSSSK+F+GG++Y  D+ SLREAF
Sbjct: 1   MAFLSKFGNILKQTTNKQLNAQVSLSSPSLFQAIRCMSSSKLFIGGMAYSMDEDSLREAF 60

Query: 61  DKYGEVVEARVITDRDTGRSRGFGFVTFTANEEASSAIQALDGQDLHGRNIRVNFATERS 120
            KYGEVV+ RVI DR+TGRSRGFGFVTFT++E ASSAIQALDG+DLHGR ++VN+A +R+
Sbjct: 61  TKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQALDGRDLHGRVVKVNYANDRT 120

Query: 121 R-----GGGYDGGSSGYNRSSSYQGG-GGY 145
                 GGGY GG  GY  S  Y GG GGY
Sbjct: 121 SGGGFGGGGYGGGGGGYGGSGGYGGGAGGY 150

[Close]
BLAST of CmaCh20G010160 vs. TAIR10
Match: AT1G74230.1 (AT1G74230.1 glycine-rich RNA-binding protein 5)

HSP 1 Score: 157.9 bits (398), Expect = 4.7e-39
Identity = 95/172 (55.23%), Postives = 115/172 (66.86%), Query Frame = 1 

Query: 1   MAFLSKVGKVFRKSSASMIRSDLQPSKLSIFQSIRLMSSSKVFVGGLSYGTDDQSLREAF 60
           MAFLSKVG++F ++S+ +  S       S+ QSIR MSSSK+FVGG+SY TD+  LREAF
Sbjct: 1   MAFLSKVGRLFSQTSSHVTASS------SMLQSIRCMSSSKIFVGGISYSTDEFGLREAF 60

Query: 61  DKYGEVVEARVITDRDTGRSRGFGFVTFTANEEASSAIQALDGQDLHGRNIRVNFATERS 120
            KYGEVV+A++I DR+TGRSRGF FVTFT+ EEAS+A+Q LDGQDLHGR IRVN+ATER 
Sbjct: 61  SKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAMQ-LDGQDLHGRRIRVNYATERG 120

Query: 121 RG------------------------GGYDGGSSGYNRSSSYQ----GGGGY 145
            G                        GGY GG+ GY  +SSY     GGGGY
Sbjct: 121 SGFGGRGFGGPGGGYGASDGGYGAPAGGYGGGAGGYGGNSSYSGNAGGGGGY 165

[Close]
BLAST of CmaCh20G010160 vs. TAIR10
Match: AT4G13850.1 (AT4G13850.1 glycine-rich RNA-binding protein 2)

HSP 1 Score: 122.5 bits (306), Expect = 2.2e-28
Identity = 74/150 (49.33%), Postives = 100/150 (66.67%), Query Frame = 1 

Query: 1   MAFLSKVGKVFRKSSASMIRSDLQPSKLSIFQSIRLMSSSKVFVGGLSYGTDDQSLREAF 60
           MAF +K+G + R++    I S+      S+  S+RLMS+ K+F+GGLS+GTDD SLR+AF
Sbjct: 1   MAFCNKLGGLLRQN----ISSNGNVPVTSMLGSLRLMST-KLFIGGLSWGTDDASLRDAF 60

Query: 61  DKYGEVVEARVITDRDTGRSRGFGFVTFTANEEASSAIQALDGQDLHGRNIRVNFATER- 120
             +G+VV+A+VI DR+TGRSRGFGFV F     A++AI  +DG++L+GR+IRVN A +R 
Sbjct: 61  AHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPANDRP 120

Query: 121 ------SRGGGYDGGSSGYNRSSSYQGGGG 144
                   GGGY GG  GY       GGGG
Sbjct: 121 SAPRAYGGGGGYSGGGGGYGGGGGGYGGGG 145

[Close]
BLAST of CmaCh20G010160 vs. TAIR10
Match: AT3G23830.1 (AT3G23830.1 glycine-rich RNA-binding protein 4)

HSP 1 Score: 120.9 bits (302), Expect = 6.4e-28
Identity = 74/152 (48.68%), Postives = 98/152 (64.47%), Query Frame = 1 

Query: 1   MAFLSKVGKVFRKSSASMIRSDLQPSKLSIFQSIRLMSSSKVFVGGLSYGTDDQSLREAF 60
           MAF +K+  + R+  +      +     S+  S+R MSS K+FVGGLS+GTDD SL++AF
Sbjct: 1   MAFCNKLSGILRQGVSQSSNGPVT----SMLGSLRYMSS-KLFVGGLSWGTDDSSLKQAF 60

Query: 61  DKYGEVVEARVITDRDTGRSRGFGFVTFTANEEASSAIQALDGQDLHGRNIRVNFATERS 120
             +GEV EA VI DR+TGRSRGFGFV+F+  + A++AI+ +DG++L+GR IRVN ATERS
Sbjct: 61  TSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKEMDGKELNGRQIRVNLATERS 120

Query: 121 R--------GGGYDGGSSGYNRSSSYQGGGGY 145
                    GGGY GG           GGGGY
Sbjct: 121 SAPRSSFGGGGGYGGG-----------GGGGY 136

[Close]
BLAST of CmaCh20G010160 vs. TAIR10
Match: AT2G21660.1 (AT2G21660.1 cold, circadian rhythm, and rna binding 2)

HSP 1 Score: 100.9 bits (250), Expect = 6.8e-22
Identity = 55/107 (51.40%), Postives = 75/107 (70.09%), Query Frame = 1 

Query: 41  KVFVGGLSYGTDDQSLREAFDKYGEVVEARVITDRDTGRSRGFGFVTFTANEEASSAIQA 100
           + FVGGL++ TDD++L  AF +YG+V+++++I DR+TGRSRGFGFVTF   +    AI+ 
Sbjct: 9   RCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEG 68

Query: 101 LDGQDLHGRNIRVNFATERSR--GGGYDGGSSGYNRSSSYQGGGGYN 146
           ++GQDL GR+I VN A  R    GGG+ GG  G  RS    GGGGY+
Sbjct: 69  MNGQDLDGRSITVNEAQSRGSGGGGGHRGGGGGGYRSG---GGGGYS 112

[Close]
BLAST of CmaCh20G010160 vs. NCBI nr
Match: gi|449439323|ref|XP_004137435.1| (PREDICTED: glycine-rich RNA-binding protein 3, mitochondrial-like [Cucumis sativus])

HSP 1 Score: 194.5 bits (493), Expect = 1.3e-46
Identity = 108/144 (75.00%), Postives = 119/144 (82.64%), Query Frame = 1 

Query: 1   MAFLSKVGKVFRKSSASMIRSDLQPSKLSIFQSIRLMSSSKVFVGGLSYGTDDQSLREAF 60
           MAFLSKVGK+F +SSAS IRS  QPS LS+FQ++R MSSSKVFVGGLSYGTDDQ L EAF
Sbjct: 1   MAFLSKVGKIFSQSSASGIRSHFQPSNLSVFQTLRFMSSSKVFVGGLSYGTDDQRLTEAF 60

Query: 61  DKYGEVVEARVITDRDTGRSRGFGFVTFTANEEASSAIQALDGQDLHGRNIRVNFATERS 120
            KYGEVVEARVI DRDTGRSRGFGFVTF A+E+ASSAIQALDGQDL GR IR ++AT+R+
Sbjct: 61  TKYGEVVEARVIMDRDTGRSRGFGFVTFGASEDASSAIQALDGQDLDGRRIRCSYATDRA 120

Query: 121 RGGGYDGGSSGYNRSSSYQGGGGY 145
            GGG  GG  GY     Y GGGGY
Sbjct: 121 SGGG--GGGGGYGGGGGY-GGGGY 141

[Close]
BLAST of CmaCh20G010160 vs. NCBI nr
Match: gi|659066558|ref|XP_008450169.1| (PREDICTED: glycine-rich RNA-binding protein 3, mitochondrial-like [Cucumis melo])

HSP 1 Score: 192.6 bits (488), Expect = 4.9e-46
Identity = 109/144 (75.69%), Postives = 117/144 (81.25%), Query Frame = 1 

Query: 1   MAFLSKVGKVFRKSSASMIRSDLQPSKLSIFQSIRLMSSSKVFVGGLSYGTDDQSLREAF 60
           MAFLSKVGKVF  SSAS IRS LQPS   +FQ+IRLMSSSKVFVGGLSY TDDQ L E F
Sbjct: 1   MAFLSKVGKVFSNSSASGIRSHLQPS---VFQTIRLMSSSKVFVGGLSYSTDDQRLTETF 60

Query: 61  DKYGEVVEARVITDRDTGRSRGFGFVTFTANEEASSAIQALDGQDLHGRNIRVNFATERS 120
           +KYGEVVEARVITDRD+GRSRGFGFVTF A+E+ASSAIQALDGQDL GR IR ++ATERS
Sbjct: 61  NKYGEVVEARVITDRDSGRSRGFGFVTFGASEDASSAIQALDGQDLDGRRIRCSYATERS 120

Query: 121 RGGGYDGGSSGYNRSSSYQGGGGY 145
            GGG  GG  GY       GGGGY
Sbjct: 121 SGGGGYGGGGGYGGGGYSGGGGGY 141

[Close]
BLAST of CmaCh20G010160 vs. NCBI nr
Match: gi|595848226|ref|XP_007209483.1| (hypothetical protein PRUPE_ppa010113mg [Prunus persica])

HSP 1 Score: 184.1 bits (466), Expect = 1.7e-43
Identity = 96/150 (64.00%), Postives = 121/150 (80.67%), Query Frame = 1 

Query: 1   MAFLSKVGKVFRKSSASMIRSDLQPSKLSIFQSIRLMS---SSKVFVGGLSYGTDDQSLR 60
           MAFLSK+G + R+++   IRS+L P KLSI Q++R MS   SSK+F+GG+SY TD+QSLR
Sbjct: 1   MAFLSKIGNILRQTANKQIRSELSPFKLSIHQAVRCMSSMASSKLFIGGISYQTDEQSLR 60

Query: 61  EAFDKYGEVVEARVITDRDTGRSRGFGFVTFTANEEASSAIQALDGQDLHGRNIRVNFAT 120
           EAF KYGEV++AR+I+DR+TGRSRGFGF+TFT++EEASSAIQALDGQ+LHGR +RVN+AT
Sbjct: 61  EAFAKYGEVIDARIISDRETGRSRGFGFITFTSSEEASSAIQALDGQELHGRRVRVNYAT 120

Query: 121 ERSR----GGGYDGGSSGYNRSSSYQGGGG 144
           +R R     GGY+GG  GY     Y GGGG
Sbjct: 121 DRPRPNFGDGGYNGGGGGYGGGGGYGGGGG 150

[Close]
BLAST of CmaCh20G010160 vs. NCBI nr
Match: gi|645269475|ref|XP_008240017.1| (PREDICTED: glycine-rich RNA-binding protein blt801 [Prunus mume])

HSP 1 Score: 182.2 bits (461), Expect = 6.6e-43
Identity = 95/150 (63.33%), Postives = 120/150 (80.00%), Query Frame = 1 

Query: 1   MAFLSKVGKVFRKSSASMIRSDLQPSKLSIFQSIRLMS---SSKVFVGGLSYGTDDQSLR 60
           MAFLSK+G + R+++   IRS+L P KLSI Q++R MS   SSK+F+GG++Y TD+QSLR
Sbjct: 1   MAFLSKIGNILRQTANKQIRSELSPFKLSIHQAVRCMSSMASSKLFIGGVAYQTDEQSLR 60

Query: 61  EAFDKYGEVVEARVITDRDTGRSRGFGFVTFTANEEASSAIQALDGQDLHGRNIRVNFAT 120
           EAF KYGEV++AR+I+DR+TGRSRGFGF+TFT++EEASSAIQALDGQ+LHGR +RVN+AT
Sbjct: 61  EAFAKYGEVIDARIISDRETGRSRGFGFITFTSSEEASSAIQALDGQELHGRRVRVNYAT 120

Query: 121 ERSR----GGGYDGGSSGYNRSSSYQGGGG 144
           +R R     GGY GG  GY     Y GGGG
Sbjct: 121 DRPRPNFGDGGYSGGGGGYGGGGGYGGGGG 150

[Close]
BLAST of CmaCh20G010160 vs. NCBI nr
Match: gi|225457213|ref|XP_002284026.1| (PREDICTED: glycine-rich RNA-binding protein blt801 [Vitis vinifera])

HSP 1 Score: 182.2 bits (461), Expect = 6.6e-43
Identity = 95/144 (65.97%), Postives = 113/144 (78.47%), Query Frame = 1 

Query: 1   MAFLSKVGKVFRKSSASMIRSDLQPSKLSIFQSIRLMSSSKVFVGGLSYGTDDQSLREAF 60
           MAF  KVG + R++ +  + S    S  SI+Q+IR MSSSK+F+GGLSY TDD SLREAF
Sbjct: 1   MAFFGKVGNILRQTVSKQVNSQFSVSNPSIYQAIRCMSSSKLFIGGLSYSTDDTSLREAF 60

Query: 61  DKYGEVVEARVITDRDTGRSRGFGFVTFTANEEASSAIQALDGQDLHGRNIRVNFATERS 120
            KYGEV+EARVI DR+TGRSRGFGFVTFT++EEASSAIQALDGQDLHGR +RVN+AT+R+
Sbjct: 61  HKYGEVIEARVIVDRETGRSRGFGFVTFTSSEEASSAIQALDGQDLHGRRVRVNYATDRA 120

Query: 121 RGGGYDGGSSGYNRSSSYQGGGGY 145
           R GG+ GG  GY       GGGGY
Sbjct: 121 RSGGF-GGGGGYGGGGGGYGGGGY 143

The following BLAST results are available for this feature:
BLAST of CmaCh20G010160 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RBG3_ARATH6.8e-4058.67Glycine-rich RNA-binding protein 3, mitochondrial OS=Arabidopsis thaliana GN=RBG... [more]
RBG5_ARATH8.3e-3855.23Glycine-rich RNA-binding protein 5, mitochondrial OS=Arabidopsis thaliana GN=RBG... [more]
RBG2_ARATH3.9e-2749.33Glycine-rich RNA-binding protein 2, mitochondrial OS=Arabidopsis thaliana GN=RBG... [more]
RBG4_ARATH1.1e-2648.68Glycine-rich RNA-binding protein 4, mitochondrial OS=Arabidopsis thaliana GN=RBG... [more]
GRP_HORVU9.6e-2657.55Glycine-rich RNA-binding protein blt801 OS=Hordeum vulgare GN=blt801 PE=1 SV=1[more]
BLAST of CmaCh20G010160 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LQL8_CUCSA8.9e-4775.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G039190 PE=4 SV=1[more]
M5WAA2_PRUPE1.2e-4364.00Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010113mg PE=4 SV=1[more]
F6GSZ1_VITVI4.6e-4365.97Putative uncharacterized protein OS=Vitis vinifera GN=VIT_17s0000g07330 PE=4 SV=... [more]
A5B074_VITVI7.8e-4365.97Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_038162 PE=4 SV=1[more]
B9RLN6_RICCO5.1e-4263.16Glycine-rich RNA-binding protein, putative OS=Ricinus communis GN=RCOM_1469720 P... [more]
BLAST of CmaCh20G010160 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G61030.13.8e-4158.67 glycine-rich RNA-binding protein 3[more]
AT1G74230.14.7e-3955.23 glycine-rich RNA-binding protein 5[more]
AT4G13850.12.2e-2849.33 glycine-rich RNA-binding protein 2[more]
AT3G23830.16.4e-2848.68 glycine-rich RNA-binding protein 4[more]
AT2G21660.16.8e-2251.40 cold, circadian rhythm, and rna binding 2[more]
BLAST of CmaCh20G010160 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449439323|ref|XP_004137435.1|1.3e-4675.00PREDICTED: glycine-rich RNA-binding protein 3, mitochondrial-like [Cucumis sativ... [more]
gi|659066558|ref|XP_008450169.1|4.9e-4675.69PREDICTED: glycine-rich RNA-binding protein 3, mitochondrial-like [Cucumis melo][more]
gi|595848226|ref|XP_007209483.1|1.7e-4364.00hypothetical protein PRUPE_ppa010113mg [Prunus persica][more]
gi|645269475|ref|XP_008240017.1|6.6e-4363.33PREDICTED: glycine-rich RNA-binding protein blt801 [Prunus mume][more]
gi|225457213|ref|XP_002284026.1|6.6e-4365.97PREDICTED: glycine-rich RNA-binding protein blt801 [Vitis vinifera][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0000166nucleotide binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0034968 histone lysine methylation
biological_process GO:0006626 protein targeting to mitochondrion
biological_process GO:0009220 pyrimidine ribonucleotide biosynthetic process
biological_process GO:0009909 regulation of flower development
biological_process GO:0010228 vegetative to reproductive phase transition of meristem
cellular_component GO:0005622 intracellular
molecular_function GO:0005524 ATP binding
molecular_function GO:0005507 copper ion binding
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0000166 nucleotide binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh20G010160.1CmaCh20G010160.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 42..112
score: 1.6
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 41..114
score: 1.1
IPR000504RNA recognition motif domainPROFILEPS50102RRMcoord: 40..118
score: 22
IPR012677Nucleotide-binding alpha-beta plait domainGENE3DG3DSA:3.30.70.330coord: 38..133
score: 2.2
IPR012677Nucleotide-binding alpha-beta plait domainunknownSSF54928RNA-binding domain, RBDcoord: 34..144
score: 2.55
NoneNo IPR availablePANTHERPTHR24012FAMILY NOT NAMEDcoord: 14..21
score: 4.3E-30coord: 39..144
score: 4.3