CmaCh20G009910 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh20G009910
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Cytochrome C biogenesis Fn protein
Location	Cma_Chr20 : 5816914 .. 5817801 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTGGTGCAGCACCTGCATTTTGGTGTATTCTTCTTTCTTTCTTTGGTCTTTCGTTCCGTCATATTCCTAATAACTTATCCAATTACAACGTATTAACCGCGAATGCACCTTTCTTTTATCAAATCTCAGGGACATGGTCTAATCATGAGGGTAGTATTTTATCATGGTGTCGGATCCCAAGTTTTTATGGATTCCTTCTTTGTTACCGGGGTAGACCCCAAAGCCATAATGTCTCAAAACGAGGAGGCCATAGAGAAACTCTTTTTTATTCCTTTCTTTCGAACTTCGTGAAGAACCCCATTCGAGATCTCCCTCGTTACGAACATCAAAGTGGGGTTGCGCCCCTGTTGTGCACTCCCTTCGTTCTACGAACCCTTGTTGATTCTGAACTTCGTTTGCTCCAGAACCGGACTTTTGACGGGCCAGCCCTTTTTTATGCGCCGCTTTACCCTGAAAGGAAAATGAGCTTTGCTCCTCTGGGCTCCCGGCGCTCCCGTGGTTCGCGAGAAGGAAAAAGGACTCATCCTTTGTTGCATCTGGCACGAGATGATAAAGAGAGAGCTTCGTCTATCGATGAACAGCGGATTGACGGAACTCTTGGCATTGCTTTGTTTTTCTCTCCTTTCCTATCAGCGAGTTCCGATCCTTTTGTTCGAAATTTCTTCGTTCGTACCGAACCGCTTGCAGAATCAAATCTAGTTCCACAAGATCCTATATCAGCTATACATCCTCCTTGCATTTATGCCGGAGACGTCGCCAGTGCTATGGGTTTTGGCTTATGTAGATCCAAAATGATGAATGGGATTGTGGCACTTCACTCGCCGCCAATGCGGAAGGATGCCCCCGAAAAGAATGGAACGCTGCTTCGCTCTGCTGGGGATCCCGTA

mRNA sequence

TTTGGTGCAGCACCTGCATTTTGGTGTATTCTTCTTTCTTTCTTTGGTCTTTCGTTCCGTCATATTCCTAATAACTTATCCAATTACAACGTATTAACCGCGAATGCACCTTTCTTTTATCAAATCTCAGGGACATGTGGGGTTGCGCCCCTGTTGTGCACTCCCTTCGTTCTACGAACCCTTGTTGATTCTGAACTTCGTTTGCTCCAGAACCGGACTTTTGACGGGCCAGCCCTTTTTTATGCGCCGCTTTACCCTGAAAGGAAAATGAGCTTTGCTCCTCTGGGCTCCCGGCGCTCCCGTGGTTCGCGAGAAGGAAAAAGGACTCATCCTTTGTTGCATCTGGCACGAGATGATAAAGAGAGAGCTTCGTCTATCGATGAACAGCGGATTGACGGAACTCTTGGCATTGCTTTGTTTTTCTCTCCTTTCCTATCAGCGAGTTCCGATCCTTTTGTTCGAAATTTCTTCGTTCGTACCGAACCGCTTGCAGAATCAAATCTAGTTCCACAAGATCCTATATCAGCTATACATCCTCCTTGCATTTATGCCGGAGACGTCGCCAGTGCTATGGGTTTTGGCTTATGTAGATCCAAAATGATGAATGGGATTGTGGCACTTCACTCGCCGCCAATGCGGAAGGATGCCCCCGAAAAGAATGGAACGCTGCTTCGCTCTGCTGGGGATCCCGTA

Coding sequence (CDS)

TTTGGTGCAGCACCTGCATTTTGGTGTATTCTTCTTTCTTTCTTTGGTCTTTCGTTCCGTCATATTCCTAATAACTTATCCAATTACAACGTATTAACCGCGAATGCACCTTTCTTTTATCAAATCTCAGGGACATGTGGGGTTGCGCCCCTGTTGTGCACTCCCTTCGTTCTACGAACCCTTGTTGATTCTGAACTTCGTTTGCTCCAGAACCGGACTTTTGACGGGCCAGCCCTTTTTTATGCGCCGCTTTACCCTGAAAGGAAAATGAGCTTTGCTCCTCTGGGCTCCCGGCGCTCCCGTGGTTCGCGAGAAGGAAAAAGGACTCATCCTTTGTTGCATCTGGCACGAGATGATAAAGAGAGAGCTTCGTCTATCGATGAACAGCGGATTGACGGAACTCTTGGCATTGCTTTGTTTTTCTCTCCTTTCCTATCAGCGAGTTCCGATCCTTTTGTTCGAAATTTCTTCGTTCGTACCGAACCGCTTGCAGAATCAAATCTAGTTCCACAAGATCCTATATCAGCTATACATCCTCCTTGCATTTATGCCGGAGACGTCGCCAGTGCTATGGGTTTTGGCTTATGTAGATCCAAAATGATGAATGGGATTGTGGCACTTCACTCGCCGCCAATGCGGAAGGATGCCCCCGAAAAGAATGGAACGCTGCTTCGCTCTGCTGGGGATCCCGTA

Protein sequence

FGAAPAFWCILLSFFGLSFRHIPNNLSNYNVLTANAPFFYQISGTCGVAPLLCTPFVLRTLVDSELRLLQNRTFDGPALFYAPLYPERKMSFAPLGSRRSRGSREGKRTHPLLHLARDDKERASSIDEQRIDGTLGIALFFSPFLSASSDPFVRNFFVRTEPLAESNLVPQDPISAIHPPCIYAGDVASAMGFGLCRSKMMNGIVALHSPPMRKDAPEKNGTLLRSAGDPV

Homology

[Close]

BLAST of CmaCh20G009910 vs. Swiss-Prot
Match: CCBS_DAUCA (Probable cytochrome c biosynthesis protein OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 336.7 bits (862), Expect = 2.1e-91
Identity = 192/295 (65.08%), Postives = 195/295 (66.10%), Query Frame = 1


Query: 1   FGAAPAFWCILLSFFGLSFRHIPNNLSNYNV-----------------------LTANAP 60
           FGAA AFWCILLSF GLSFRHIPNNLSNYNV                       L     
Sbjct: 29  FGAALAFWCILLSFLGLSFRHIPNNLSNYNVLTANAPFFYQISGTWSNHEGSISLWCRIL 88

Query: 61  FFY------------------------------------------QISGTCGVAPLLCTP 120
            FY                                          +       AP L TP
Sbjct: 89  SFYGFLLCYRGRPQSHNVSKRGGHRETLFYSFVSNFVKNPILSLPRYEQKSRAAPQLYTP 148

Query: 121 FVLRTLVDSELRLLQNRTFDGPALFY--APLYPERKMSFAPLGSRRSRGSREGKRTHPLL 180
           FVLRT VDSELR  +NRTFDGPALFY  APLYPERKMSFAPLG+R      EGKR   LL
Sbjct: 149 FVLRTFVDSELRSRRNRTFDGPALFYVYAPLYPERKMSFAPLGARLPVVRGEGKRMSLLL 208

Query: 181 HLARDDKERASSIDEQRIDGTLGIALFFSPFLSASSDPFVRNFFVRTEPLAESNLVPQDP 229
           HLARDDKERASSIDEQRIDG LGIALFFSPFLSASSDPFVRNFFVRTEPLAESN VPQDP
Sbjct: 209 HLARDDKERASSIDEQRIDGALGIALFFSPFLSASSDPFVRNFFVRTEPLAESNPVPQDP 268

[Close]

BLAST of CmaCh20G009910 vs. Swiss-Prot
Match: CCMF1_ARATH (Cytochrome c biogenesis CcmF N-terminal-like mitochondrial protein 1 OS=Arabidopsis thaliana GN=CCMFN1 PE=1 SV=3)

HSP 1 Score: 296.6 bits (758), Expect = 2.4e-79
Identity = 164/238 (68.91%), Postives = 177/238 (74.37%), Query Frame = 1


Query: 8   WCILLSFFGLSF----RHIPNNLSNYNVLTANAPFFYQISGT-------------CGVAP 67
           WC +L+F+G  F    R   +N+        +  FF+ ++                G+  
Sbjct: 86  WCWILNFYGFFFCYRGRPQSHNVLKQGGYRESLFFFFVLNFVKNSILSLLRYEQESGLKN 145

Query: 68  LLCTPFVLRTLVDSELRLLQNRTFDGPALFYAPLYPERKMSFAPLGSRRSRGSREGKRTH 127
            L TPFVLRTLVDSEL   +NRTFDGPALFYAPLYPERK+   PL + R RGSREGKRTH
Sbjct: 146 QLYTPFVLRTLVDSELCSRRNRTFDGPALFYAPLYPERKIK-NPLDAWRFRGSREGKRTH 205

Query: 128 PLLHLARDDKERASSIDEQRIDGTLGIALFFSPFLSASSDPFVRNFFVRTEPLAESNLVP 187
           PLLHLARDDKERASSIDEQRIDG LGIALFFS FL ASSDPFVRNFFV TEPLAE N V 
Sbjct: 206 PLLHLARDDKERASSIDEQRIDGALGIALFFSFFLLASSDPFVRNFFVCTEPLAELNPVL 265

Query: 188 QDPISAIHPPCIYAGDVASAMGFGLCRSKMMNGIVALHSPPMRKDAPEKNGTLLRSAG 229
           QDPI AIHPPCIYAGDVASA GFGLCRSKMMNGIVALHSPPMRKDA EKNGTLL SAG
Sbjct: 266 QDPILAIHPPCIYAGDVASAEGFGLCRSKMMNGIVALHSPPMRKDAAEKNGTLLCSAG 322

[Close]

BLAST of CmaCh20G009910 vs. Swiss-Prot
Match: CCBS_OENBE (Probable cytochrome c biosynthesis protein OS=Oenothera berteroana PE=2 SV=3)

HSP 1 Score: 281.6 bits (719), Expect = 7.9e-75
Identity = 162/238 (68.07%), Postives = 175/238 (73.53%), Query Frame = 1


Query: 8   WCILLSFFG--LSFRHIP--NNLSNYNVLTANAPFFYQISGTCG-VAPLLC--------- 67
           WC +LSF+G  L +R  P  +N+S          +F+ ++     +  LLC         
Sbjct: 84  WCWILSFYGFLLCYRGRPQSHNVSKRGGYRETFFYFFVLNFVKNFILSLLCYEQKTLAVP 143

Query: 68  ---TPFVLRTLVDSELRLLQNRTFDGPALFYAPLYPERKMSFAPLGSRRSRGSREGKRTH 127
              TPFVLRTLVDSEL   +NRTFDGPALFYAPLYPERKMSFA LG+R      EGKRT+
Sbjct: 144 QLYTPFVLRTLVDSELCSRRNRTFDGPALFYAPLYPERKMSFAFLGARLPVVRGEGKRTY 203

Query: 128 PLLHLARDDKERASSIDEQRIDGTLGIALFFSPFLSASSDPFVRNFFVRTEPLAESNLVP 187
            LLHLARDDKERASSIDEQRIDG LGIALFFS FL ASSD FVRNFFV TEPLAE N V 
Sbjct: 204 LLLHLARDDKERASSIDEQRIDGALGIALFFSFFLLASSDFFVRNFFVCTEPLAELNPVL 263

Query: 188 QDPISAIHPPCIYAGDVASAMGFGLCRSKMMNGIVALHSPPMRKDAPEKNGTLLRSAG 229
           QDPI AIHPPCIYAGDVASAMGF LCRSKMMNGIVALHSPPM KDA EKNG LL SAG
Sbjct: 264 QDPILAIHPPCIYAGDVASAMGFCLCRSKMMNGIVALHSPPMWKDAAEKNGRLLCSAG 321

[Close]

BLAST of CmaCh20G009910 vs. Swiss-Prot
Match: CCBS_MARPO (Probable cytochrome c biosynthesis protein OS=Marchantia polymorpha GN=YMF4 PE=3 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 3.6e-27
Identity = 92/204 (45.10%), Postives = 115/204 (56.37%), Query Frame = 1


Query: 7   FWCILLSFFGLSFRHIPNNLSNYNVLT---ANAPFFYQISGTCG--VAPLLCTPFVLRTL 66
           F+   +SFFG+ F +I ++ SNYNV T   ANAP FY+ISGT       LL   ++L   
Sbjct: 60  FFLFTMSFFGILFCYISSDFSNYNVFTNSNANAPLFYKISGTWSNHEGSLLLWCWILS-- 119

Query: 67  VDSELRLLQNRTFDGPALFYAPL--YPERKMSFAPLGSRRSRGSREGKRTHPLLHLARDD 126
                             FY  L  Y  R  +     S++++G+     +        D 
Sbjct: 120 ------------------FYGFLFCYLARPCNV----SKQAKGAENKNISFLFSSKGLDQ 179

Query: 127 KERASS-IDEQRIDGTLGIALFFSPFLSASSDPFVRNFFVRTEPLAESNLVPQDPISAIH 186
           +ERA S IDEQ+I    GIALFFS FL ASS+PFVR  FV T+ LAE N V QDPI AIH
Sbjct: 180 RERAVSLIDEQQI--YKGIALFFSIFLLASSNPFVRISFVCTKSLAELNPVLQDPILAIH 237

Query: 187 PPCIYAGDVASAMGFGLCRSKMMN 203
           PPCIYAG VASA+GF LC SK++N
Sbjct: 240 PPCIYAGYVASAIGFCLCLSKIIN 237

[Close]

BLAST of CmaCh20G009910 vs. TrEMBL
Match: A0A142BZ21_ZIZJJ (Cytochrome c biogenesis FN OS=Ziziphus jujuba GN=ccmFn PE=4 SV=1)

HSP 1 Score: 374.0 bits (959), Expect = 1.3e-100
Identity = 203/293 (69.28%), Postives = 206/293 (70.31%), Query Frame = 1


Query: 1   FGAAPAFWCILLSFFGLSFRHIPNNLSNYNV-----------------------LTANAP 60
           FGAAP FWCILLSF GLSFRHIPNNLSNYNV                            P
Sbjct: 29  FGAAPGFWCILLSFLGLSFRHIPNNLSNYNVLTANAPFFYQISGTWSNHEGSILSWCRIP 88

Query: 61  FFY------------------------------------------QISGTCGVAPLLCTP 120
            FY                                          +     G AP L TP
Sbjct: 89  SFYGFLLCYRGRPQSHNVSKRGGHRETIYYSFVSNFVKNSILSLPRYEQKSGAAPQLYTP 148

Query: 121 FVLRTLVDSELRLLQNRTFDGPALFYAPLYPERKMSFAPLGSRRSRGSREGKRTHPLLHL 180
           FVLRTLVDSELR  +NRTFDGPALFYAPLYPERKMSFAPLG+RRSRGSREGKRTHPLLHL
Sbjct: 149 FVLRTLVDSELRSRRNRTFDGPALFYAPLYPERKMSFAPLGARRSRGSREGKRTHPLLHL 208

Query: 181 ARDDKERASSIDEQRIDGTLGIALFFSPFLSASSDPFVRNFFVRTEPLAESNLVPQDPIS 229
           ARDDKERASSIDEQRIDG LGIALFFS FLSASSDPFVRNFFVRTEPLAESN VPQDPIS
Sbjct: 209 ARDDKERASSIDEQRIDGALGIALFFSSFLSASSDPFVRNFFVRTEPLAESNPVPQDPIS 268

[Close]

BLAST of CmaCh20G009910 vs. TrEMBL
Match: N0DKE2_PHAAN (Cytochrome c biogenesis FN OS=Phaseolus angularis GN=ccmFn PE=4 SV=1)

HSP 1 Score: 369.4 bits (947), Expect = 3.2e-99
Identity = 203/293 (69.28%), Postives = 206/293 (70.31%), Query Frame = 1


Query: 1   FGAAPAFWCILLSFFGLSFRHIPNNLSNYNV-----------------------LTANAP 60
           FGAAPAFWCILLSF GLSFRHIPNNLSNYNV                            P
Sbjct: 30  FGAAPAFWCILLSFLGLSFRHIPNNLSNYNVLTANAPFFYQISGTWSNHEGSILSWCRIP 89

Query: 61  FFY-----------------------------------------QISGTCGVAPLLCTPF 120
            FY                                         +     G AP L TPF
Sbjct: 90  RFYGFLLCYRGRPQSHNVSKRGGHREVLYYFVSNFVKNSILSLPRYEQKSGAAPQLYTPF 149

Query: 121 VLRTLVDSELRLLQNRTFDGPALFYAPLYPERKMSFAPLGSRRSRGSREGKR-THPLLHL 180
           VLRTLVDSELR  +NRTFDGPALFYAPLYPERKMS APLG+RRSRGSREGKR THPLLHL
Sbjct: 150 VLRTLVDSELRSRRNRTFDGPALFYAPLYPERKMSLAPLGARRSRGSREGKRRTHPLLHL 209

Query: 181 ARDDKERASSIDEQRIDGTLGIALFFSPFLSASSDPFVRNFFVRTEPLAESNLVPQDPIS 229
           ARDDKERASSIDEQRIDG LGIALFFSPFLSASSDPFVRNFFVRTEPLAESN VPQDPIS
Sbjct: 210 ARDDKERASSIDEQRIDGALGIALFFSPFLSASSDPFVRNFFVRTEPLAESNPVPQDPIS 269

[Close]

BLAST of CmaCh20G009910 vs. TrEMBL
Match: E9KZN0_VIGRA (Cytochrome c biogenesis FN OS=Vigna radiata GN=ccmFn PE=4 SV=1)

HSP 1 Score: 369.4 bits (947), Expect = 3.2e-99
Identity = 203/293 (69.28%), Postives = 206/293 (70.31%), Query Frame = 1


Query: 1   FGAAPAFWCILLSFFGLSFRHIPNNLSNYNV-----------------------LTANAP 60
           FGAAPAFWCILLSF GLSFRHIPNNLSNYNV                            P
Sbjct: 30  FGAAPAFWCILLSFLGLSFRHIPNNLSNYNVLTANAPFFYQISGTWSNHEGSILSWCRIP 89

Query: 61  FFY-----------------------------------------QISGTCGVAPLLCTPF 120
            FY                                         +     G AP L TPF
Sbjct: 90  RFYGFLLCYRGRPQSHNVSKRGGHREVLYYFVSNFVKNSILSLPRYEQKSGAAPQLYTPF 149

Query: 121 VLRTLVDSELRLLQNRTFDGPALFYAPLYPERKMSFAPLGSRRSRGSREGKR-THPLLHL 180
           VLRTLVDSELR  +NRTFDGPALFYAPLYPERKMS APLG+RRSRGSREGKR THPLLHL
Sbjct: 150 VLRTLVDSELRSRRNRTFDGPALFYAPLYPERKMSLAPLGARRSRGSREGKRRTHPLLHL 209

Query: 181 ARDDKERASSIDEQRIDGTLGIALFFSPFLSASSDPFVRNFFVRTEPLAESNLVPQDPIS 229
           ARDDKERASSIDEQRIDG LGIALFFSPFLSASSDPFVRNFFVRTEPLAESN VPQDPIS
Sbjct: 210 ARDDKERASSIDEQRIDGALGIALFFSPFLSASSDPFVRNFFVRTEPLAESNPVPQDPIS 269

[Close]

BLAST of CmaCh20G009910 vs. TrEMBL
Match: A0A0U4ZGU0_VIGRR (Cytochrome c biogenesis FN OS=Vigna radiata var. radiata GN=ccmFN PE=4 SV=1)

HSP 1 Score: 369.4 bits (947), Expect = 3.2e-99
Identity = 203/293 (69.28%), Postives = 206/293 (70.31%), Query Frame = 1


Query: 1   FGAAPAFWCILLSFFGLSFRHIPNNLSNYNV-----------------------LTANAP 60
           FGAAPAFWCILLSF GLSFRHIPNNLSNYNV                            P
Sbjct: 30  FGAAPAFWCILLSFLGLSFRHIPNNLSNYNVLTANAPFFYQISGTWSNHEGSILSWCRIP 89

Query: 61  FFY-----------------------------------------QISGTCGVAPLLCTPF 120
            FY                                         +     G AP L TPF
Sbjct: 90  RFYGFLLCYRGRPQSHNVSKRGGHREVLYYFVSNFVKNSILSLPRYEQKSGAAPQLYTPF 149

Query: 121 VLRTLVDSELRLLQNRTFDGPALFYAPLYPERKMSFAPLGSRRSRGSREGKR-THPLLHL 180
           VLRTLVDSELR  +NRTFDGPALFYAPLYPERKMS APLG+RRSRGSREGKR THPLLHL
Sbjct: 150 VLRTLVDSELRSRRNRTFDGPALFYAPLYPERKMSLAPLGARRSRGSREGKRRTHPLLHL 209

Query: 181 ARDDKERASSIDEQRIDGTLGIALFFSPFLSASSDPFVRNFFVRTEPLAESNLVPQDPIS 229
           ARDDKERASSIDEQRIDG LGIALFFSPFLSASSDPFVRNFFVRTEPLAESN VPQDPIS
Sbjct: 210 ARDDKERASSIDEQRIDGALGIALFFSPFLSASSDPFVRNFFVRTEPLAESNPVPQDPIS 269

[Close]

BLAST of CmaCh20G009910 vs. TrEMBL
Match: M1FN36_SOYBN (Cytochrome c biogenesis FN OS=Glycine max GN=ccmFn PE=4 SV=1)

HSP 1 Score: 369.4 bits (947), Expect = 3.2e-99
Identity = 203/293 (69.28%), Postives = 206/293 (70.31%), Query Frame = 1


Query: 1   FGAAPAFWCILLSFFGLSFRHIPNNLSNYNV-----------------------LTANAP 60
           FGAAPAFWCILLSF GLSFRHIPNNLSNYNV                            P
Sbjct: 30  FGAAPAFWCILLSFLGLSFRHIPNNLSNYNVLTANAPFFYQISGTWSNHEGSILSWCRIP 89

Query: 61  FFY-----------------------------------------QISGTCGVAPLLCTPF 120
            FY                                         +     G AP L TPF
Sbjct: 90  RFYGFLLCYRGRPQSHNVSKRGGHREVLYYFVSNFVKNSILSLPRYEQKSGAAPQLYTPF 149

Query: 121 VLRTLVDSELRLLQNRTFDGPALFYAPLYPERKMSFAPLGSRRSRGSREGKR-THPLLHL 180
           VLRTLVDSELR  +NRTFDGPALFYAPLYPERKMS APLG+RRSRGSREGKR THPLLHL
Sbjct: 150 VLRTLVDSELRSRRNRTFDGPALFYAPLYPERKMSLAPLGARRSRGSREGKRRTHPLLHL 209

Query: 181 ARDDKERASSIDEQRIDGTLGIALFFSPFLSASSDPFVRNFFVRTEPLAESNLVPQDPIS 229
           ARDDKERASSIDEQRIDG LGIALFFSPFLSASSDPFVRNFFVRTEPLAESN VPQDPIS
Sbjct: 210 ARDDKERASSIDEQRIDGALGIALFFSPFLSASSDPFVRNFFVRTEPLAESNPVPQDPIS 269

[Close]

BLAST of CmaCh20G009910 vs. TAIR10
Match: ATMG00830.1 (ATMG00830.1 cytochrome C biogenesis 382)

HSP 1 Score: 348.6 bits (893), Expect = 3.0e-96
Identity = 195/293 (66.55%), Postives = 200/293 (68.26%), Query Frame = 1


Query: 1   FGAAPAFWCILLSFFGLSFRHIPNNLSNYNV-----------------------LTANAP 60
           FGAAPAFWCILLSF GLSF HIPNNLSNYNV                       L    P
Sbjct: 31  FGAAPAFWCILLSFLGLSFCHIPNNLSNYNVLTANAPFFYQISGTWSNHEGSILLWCRIP 90

Query: 61  FFY------------------------------------------QISGTCGVAPLLCTP 120
            FY                                          +     G+   L TP
Sbjct: 91  NFYGFFLCYRGRPQSHNVLKQGGHRESLFFFFVSNFVKNSILSLPRYEQESGLKNQLYTP 150

Query: 121 FVLRTLVDSELRLLQNRTFDGPALFYAPLYPERKMSFAPLGSRRSRGSREGKRTHPLLHL 180
           FVLRTLVDSELR  +NRTFDGPALFYAPLYPERK+   PL + RSRGSREGKRTHPLLHL
Sbjct: 151 FVLRTLVDSELRSRRNRTFDGPALFYAPLYPERKIK-NPLDAWRSRGSREGKRTHPLLHL 210

Query: 181 ARDDKERASSIDEQRIDGTLGIALFFSPFLSASSDPFVRNFFVRTEPLAESNLVPQDPIS 229
           ARDDKERASSIDEQRIDG LGIALFFSPFLSASSDPFVRNFFV TEPLAESN VPQDPIS
Sbjct: 211 ARDDKERASSIDEQRIDGALGIALFFSPFLSASSDPFVRNFFVCTEPLAESNPVPQDPIS 270

[Close]

BLAST of CmaCh20G009910 vs. NCBI nr
Match: gi|1016470821|ref|YP_009241680.1| (cytochrome c biogenesis FN (mitochondrion) [Ziziphus jujuba])

HSP 1 Score: 374.0 bits (959), Expect = 1.9e-100
Identity = 203/293 (69.28%), Postives = 206/293 (70.31%), Query Frame = 1


Query: 1   FGAAPAFWCILLSFFGLSFRHIPNNLSNYNV-----------------------LTANAP 60
           FGAAP FWCILLSF GLSFRHIPNNLSNYNV                            P
Sbjct: 29  FGAAPGFWCILLSFLGLSFRHIPNNLSNYNVLTANAPFFYQISGTWSNHEGSILSWCRIP 88

Query: 61  FFY------------------------------------------QISGTCGVAPLLCTP 120
            FY                                          +     G AP L TP
Sbjct: 89  SFYGFLLCYRGRPQSHNVSKRGGHRETIYYSFVSNFVKNSILSLPRYEQKSGAAPQLYTP 148

Query: 121 FVLRTLVDSELRLLQNRTFDGPALFYAPLYPERKMSFAPLGSRRSRGSREGKRTHPLLHL 180
           FVLRTLVDSELR  +NRTFDGPALFYAPLYPERKMSFAPLG+RRSRGSREGKRTHPLLHL
Sbjct: 149 FVLRTLVDSELRSRRNRTFDGPALFYAPLYPERKMSFAPLGARRSRGSREGKRTHPLLHL 208

Query: 181 ARDDKERASSIDEQRIDGTLGIALFFSPFLSASSDPFVRNFFVRTEPLAESNLVPQDPIS 229
           ARDDKERASSIDEQRIDG LGIALFFS FLSASSDPFVRNFFVRTEPLAESN VPQDPIS
Sbjct: 209 ARDDKERASSIDEQRIDGALGIALFFSSFLSASSDPFVRNFFVRTEPLAESNPVPQDPIS 268

[Close]

BLAST of CmaCh20G009910 vs. NCBI nr
Match: gi|476507692|ref|YP_007516899.1| (cytochrome c biogenesis FN (mitochondrion) [Glycine max])

HSP 1 Score: 369.4 bits (947), Expect = 4.6e-99
Identity = 203/293 (69.28%), Postives = 206/293 (70.31%), Query Frame = 1


Query: 1   FGAAPAFWCILLSFFGLSFRHIPNNLSNYNV-----------------------LTANAP 60
           FGAAPAFWCILLSF GLSFRHIPNNLSNYNV                            P
Sbjct: 30  FGAAPAFWCILLSFLGLSFRHIPNNLSNYNVLTANAPFFYQISGTWSNHEGSILSWCRIP 89

Query: 61  FFY-----------------------------------------QISGTCGVAPLLCTPF 120
            FY                                         +     G AP L TPF
Sbjct: 90  RFYGFLLCYRGRPQSHNVSKRGGHREVLYYFVSNFVKNSILSLPRYEQKSGAAPQLYTPF 149

Query: 121 VLRTLVDSELRLLQNRTFDGPALFYAPLYPERKMSFAPLGSRRSRGSREGKR-THPLLHL 180
           VLRTLVDSELR  +NRTFDGPALFYAPLYPERKMS APLG+RRSRGSREGKR THPLLHL
Sbjct: 150 VLRTLVDSELRSRRNRTFDGPALFYAPLYPERKMSLAPLGARRSRGSREGKRRTHPLLHL 209

Query: 181 ARDDKERASSIDEQRIDGTLGIALFFSPFLSASSDPFVRNFFVRTEPLAESNLVPQDPIS 229
           ARDDKERASSIDEQRIDG LGIALFFSPFLSASSDPFVRNFFVRTEPLAESN VPQDPIS
Sbjct: 210 ARDDKERASSIDEQRIDGALGIALFFSPFLSASSDPFVRNFFVRTEPLAESNPVPQDPIS 269

[Close]

BLAST of CmaCh20G009910 vs. NCBI nr
Match: gi|501595007|ref|YP_007889794.1| (cytochrome c biogenesis FN (mitochondrion) [Vigna angularis])

HSP 1 Score: 369.4 bits (947), Expect = 4.6e-99
Identity = 203/293 (69.28%), Postives = 206/293 (70.31%), Query Frame = 1


Query: 1   FGAAPAFWCILLSFFGLSFRHIPNNLSNYNV-----------------------LTANAP 60
           FGAAPAFWCILLSF GLSFRHIPNNLSNYNV                            P
Sbjct: 30  FGAAPAFWCILLSFLGLSFRHIPNNLSNYNVLTANAPFFYQISGTWSNHEGSILSWCRIP 89

Query: 61  FFY-----------------------------------------QISGTCGVAPLLCTPF 120
            FY                                         +     G AP L TPF
Sbjct: 90  RFYGFLLCYRGRPQSHNVSKRGGHREVLYYFVSNFVKNSILSLPRYEQKSGAAPQLYTPF 149

Query: 121 VLRTLVDSELRLLQNRTFDGPALFYAPLYPERKMSFAPLGSRRSRGSREGKR-THPLLHL 180
           VLRTLVDSELR  +NRTFDGPALFYAPLYPERKMS APLG+RRSRGSREGKR THPLLHL
Sbjct: 150 VLRTLVDSELRSRRNRTFDGPALFYAPLYPERKMSLAPLGARRSRGSREGKRRTHPLLHL 209

Query: 181 ARDDKERASSIDEQRIDGTLGIALFFSPFLSASSDPFVRNFFVRTEPLAESNLVPQDPIS 229
           ARDDKERASSIDEQRIDG LGIALFFSPFLSASSDPFVRNFFVRTEPLAESN VPQDPIS
Sbjct: 210 ARDDKERASSIDEQRIDGALGIALFFSPFLSASSDPFVRNFFVRTEPLAESNPVPQDPIS 269

[Close]

BLAST of CmaCh20G009910 vs. NCBI nr
Match: gi|323149043|ref|YP_004222823.1| (cytochrome c biogenesis FN [Vigna radiata])

HSP 1 Score: 369.4 bits (947), Expect = 4.6e-99
Identity = 203/293 (69.28%), Postives = 206/293 (70.31%), Query Frame = 1


Query: 1   FGAAPAFWCILLSFFGLSFRHIPNNLSNYNV-----------------------LTANAP 60
           FGAAPAFWCILLSF GLSFRHIPNNLSNYNV                            P
Sbjct: 30  FGAAPAFWCILLSFLGLSFRHIPNNLSNYNVLTANAPFFYQISGTWSNHEGSILSWCRIP 89

Query: 61  FFY-----------------------------------------QISGTCGVAPLLCTPF 120
            FY                                         +     G AP L TPF
Sbjct: 90  RFYGFLLCYRGRPQSHNVSKRGGHREVLYYFVSNFVKNSILSLPRYEQKSGAAPQLYTPF 149

Query: 121 VLRTLVDSELRLLQNRTFDGPALFYAPLYPERKMSFAPLGSRRSRGSREGKR-THPLLHL 180
           VLRTLVDSELR  +NRTFDGPALFYAPLYPERKMS APLG+RRSRGSREGKR THPLLHL
Sbjct: 150 VLRTLVDSELRSRRNRTFDGPALFYAPLYPERKMSLAPLGARRSRGSREGKRRTHPLLHL 209

Query: 181 ARDDKERASSIDEQRIDGTLGIALFFSPFLSASSDPFVRNFFVRTEPLAESNLVPQDPIS 229
           ARDDKERASSIDEQRIDG LGIALFFSPFLSASSDPFVRNFFVRTEPLAESN VPQDPIS
Sbjct: 210 ARDDKERASSIDEQRIDGALGIALFFSPFLSASSDPFVRNFFVRTEPLAESNPVPQDPIS 269

[Close]

BLAST of CmaCh20G009910 vs. NCBI nr
Match: gi|584592135|dbj|BAO50886.1| (cytochrome c biogenesis FN (mitochondrion) [Hevea brasiliensis])

HSP 1 Score: 365.9 bits (938), Expect = 5.1e-98
Identity = 200/293 (68.26%), Postives = 204/293 (69.62%), Query Frame = 1


Query: 1   FGAAPAFWCILLSFFGLSFRHIPNNLSNYNV-----------------------LTANAP 60
           FGAAPAFWCILLSF GLSFRHIPNNLSNYNV                            P
Sbjct: 29  FGAAPAFWCILLSFLGLSFRHIPNNLSNYNVLTANAPFFYQISGTWSNHEGSILSWCRIP 88

Query: 61  FFY------------------------------------------QISGTCGVAPLLCTP 120
            FY                                          +     G AP L TP
Sbjct: 89  SFYGFLLCYRGRPQSHNVSKRGGHRETFFYSFVSNFVKNSILSLPRYEQKSGAAPQLYTP 148

Query: 121 FVLRTLVDSELRLLQNRTFDGPALFYAPLYPERKMSFAPLGSRRSRGSREGKRTHPLLHL 180
           FVLR LVDSELR  +NRTFDGPALFYAPLYPERKMSFAPLG+RRSRGSREGKRTHPLLHL
Sbjct: 149 FVLRILVDSELRSRRNRTFDGPALFYAPLYPERKMSFAPLGARRSRGSREGKRTHPLLHL 208

Query: 181 ARDDKERASSIDEQRIDGTLGIALFFSPFLSASSDPFVRNFFVRTEPLAESNLVPQDPIS 229
           ARDDKERASSI E+RIDG LGIALFFS FLSASSDPFVRNFFVRTEPLAESN VPQDPIS
Sbjct: 209 ARDDKERASSIHEKRIDGALGIALFFSLFLSASSDPFVRNFFVRTEPLAESNPVPQDPIS 268

The following BLAST results are available for this feature:

BLAST of CmaCh20G009910 vs. Swiss-Prot


Match Name	E-value	Identity	Description
CCBS_DAUCA	2.1e-91	65.08	Probable cytochrome c biosynthesis protein OS=Daucus carota PE=2 SV=1	[more]
CCMF1_ARATH	2.4e-79	68.91	Cytochrome c biogenesis CcmF N-terminal-like mitochondrial protein 1 OS=Arabidop...	[more]
CCBS_OENBE	7.9e-75	68.07	Probable cytochrome c biosynthesis protein OS=Oenothera berteroana PE=2 SV=3	[more]
CCBS_MARPO	3.6e-27	45.10	Probable cytochrome c biosynthesis protein OS=Marchantia polymorpha GN=YMF4 PE=3...	[more]

BLAST of CmaCh20G009910 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A142BZ21_ZIZJJ	1.3e-100	69.28	Cytochrome c biogenesis FN OS=Ziziphus jujuba GN=ccmFn PE=4 SV=1	[more]
N0DKE2_PHAAN	3.2e-99	69.28	Cytochrome c biogenesis FN OS=Phaseolus angularis GN=ccmFn PE=4 SV=1	[more]
E9KZN0_VIGRA	3.2e-99	69.28	Cytochrome c biogenesis FN OS=Vigna radiata GN=ccmFn PE=4 SV=1	[more]
A0A0U4ZGU0_VIGRR	3.2e-99	69.28	Cytochrome c biogenesis FN OS=Vigna radiata var. radiata GN=ccmFN PE=4 SV=1	[more]
M1FN36_SOYBN	3.2e-99	69.28	Cytochrome c biogenesis FN OS=Glycine max GN=ccmFn PE=4 SV=1	[more]

BLAST of CmaCh20G009910 vs. TAIR10


Match Name	E-value	Identity	Description
ATMG00830.1	3.0e-96	66.55	ATMG00830.1 cytochrome C biogenesis 382	[more]

BLAST of CmaCh20G009910 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|1016470821\|ref\|YP_009241680.1\|	1.9e-100	69.28	cytochrome c biogenesis FN (mitochondrion) [Ziziphus jujuba]	[more]
gi\|476507692\|ref\|YP_007516899.1\|	4.6e-99	69.28	cytochrome c biogenesis FN (mitochondrion) [Glycine max]	[more]
gi\|501595007\|ref\|YP_007889794.1\|	4.6e-99	69.28	cytochrome c biogenesis FN (mitochondrion) [Vigna angularis]	[more]
gi\|323149043\|ref\|YP_004222823.1\|	4.6e-99	69.28	cytochrome c biogenesis FN [Vigna radiata]	[more]
gi\|584592135\|dbj\|BAO50886.1\|	5.1e-98	68.26	cytochrome c biogenesis FN (mitochondrion) [Hevea brasiliensis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR002541	Cyt_c_assembly
IPR003567	Cyt_c_biogenesis
IPR003569	Cyt_c_biogenesis_plant

Vocabulary: **Biological Process**
Term	Definition
GO:0017004	cytochrome complex assembly
GO:0015886	heme transport

Vocabulary: **Molecular Function**
Term	Definition
GO:0020037	heme binding
GO:0015232	heme transporter activity

Vocabulary: **Cellular Component**
Term	Definition
GO:0016020	membrane

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0017004	cytochrome complex assembly
biological_process	GO:0015886	heme transport
cellular_component	GO:0016020	membrane
cellular_component	GO:0005739	mitochondrion
molecular_function	GO:0020037	heme binding
molecular_function	GO:0015232	heme transporter activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh20G009910.1	CmaCh20G009910.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002541	Cytochrome c assembly protein	PFAM	PF01578	Cytochrom_C_asm	coord: 6..201 score: 6.
IPR003567	Cytochrome c-type biogenesis protein	PRINTS	PR01410	CCBIOGENESIS	coord: 165..187 score: 2.4E-11coord: 137..154 score: 2.4
IPR003567	Cytochrome c-type biogenesis protein	PANTHER	PTHR30009:SF0	CYTOCHROME C ASSEMBLY PROTEIN-RELATED	coord: 106..213 score: 3.0E-33coord: 1..74 score: 3.0
IPR003569	Probable cytochrome c biosynthesis protein, plants	PRINTS	PR01412	CCBSBIOGNSIS	coord: 136..148 score: 1.7E-49coord: 181..202 score: 1.7E-49coord: 7..19 score: 1.7E-49coord: 152..167 score: 1.7E-49coord: 19..33 score: 1.7
None	No IPR available	PANTHER	PTHR30009	CYTOCHROME C-TYPE SYNTHESIS PROTEIN AND PTS TRANSMEMBRANE COMPONENT	coord: 106..213 score: 3.0E-33coord: 1..74 score: 3.0

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh20G009910	Cucurbita moschata (Rifu)	cmacmoB551
CmaCh20G009910	Cucurbita moschata (Rifu)	cmacmoB554
CmaCh20G009910	Wild cucumber (PI 183967)	cmacpiB546
CmaCh20G009910	Cucumber (Chinese Long) v2	cmacuB540
CmaCh20G009910	Melon (DHL92) v3.5.1	cmameB498
CmaCh20G009910	Watermelon (Charleston Gray)	cmawcgB496
CmaCh20G009910	Watermelon (97103) v1	cmawmB536
CmaCh20G009910	Cucurbita pepo (Zucchini)	cmacpeB565
CmaCh20G009910	Cucurbita pepo (Zucchini)	cmacpeB585
CmaCh20G009910	Bottle gourd (USVL1VR-Ls)	cmalsiB510
CmaCh20G009910	Cucumber (Gy14) v2	cgybcmaB221
CmaCh20G009910	Melon (DHL92) v3.6.1	cmamedB577
CmaCh20G009910	Silver-seed gourd	carcmaB0566
CmaCh20G009910	Silver-seed gourd	carcmaB0572
CmaCh20G009910	Cucumber (Chinese Long) v3	cmacucB0671
CmaCh20G009910	Cucumber (Chinese Long) v3	cmacucB0654
CmaCh20G009910	Watermelon (97103) v2	cmawmbB584
CmaCh20G009910	Wax gourd	cmawgoB0690
CmaCh20G009910	Wax gourd	cmawgoB0698
CmaCh20G009910	Wax gourd	cmawgoB0700
CmaCh20G009910	Cucurbita maxima (Rimu)	cmacmaB469
CmaCh20G009910	Cucumber (Gy14) v1	cgycmaB1016