CmaCh20G009590 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh20G009590
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Pre-mRNA-splicing factor of RES complex protein
Location	Cma_Chr20 : 4859942 .. 4860344 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTGTGGAATCAAAGTCCTTTAAGGAATATCTTAAACGATATGAAAGTAACACCGAGGTGGATAAGAAAAAGAAGAAGAAAAAGAAGAGGACCACAACAGCAACCAAACCAAATGATCTAGGTGTTTTAGTCGTGGACGAAGATCCTGTCTGGCAGAAGCTAATAATTATTGAAGAGGATAATGTTGATAATTCGACTGGTAAAGTATTAGTGTGGTTTATGAATTTGTATATTTTGTCCTAGGGAATTTTTGGCTATTGTTTTTACATCTCCGTTCTCCTATACTGTAGATGAGGAGCCCCAAGTCAATGAAGATATTGAGGTTAAGAGAATGAGGAGGCTTCAAGAACTAAAAGCCAAGCGACCATATAATTCCATAAGTGAAGATGGAAGTGGTTGA

mRNA sequence

ATGTCTGTGGAATCAAAGTCCTTTAAGGAATATCTTAAACGATATGAAAGTAACACCGAGGTGGATAAGAAAAAGAAGAAGAAAAAGAAGAGGACCACAACAGCAACCAAACCAAATGATCTAGGTGTTTTAGTCGTGGACGAAGATCCTGTCTGGCAGAAGCTAATAATTATTGAAGAGGATAATGTTGATAATTCGACTGATGAGGAGCCCCAAGTCAATGAAGATATTGAGGTTAAGAGAATGAGGAGGCTTCAAGAACTAAAAGCCAAGCGACCATATAATTCCATAAGTGAAGATGGAAGTGGTTGA

Coding sequence (CDS)

ATGTCTGTGGAATCAAAGTCCTTTAAGGAATATCTTAAACGATATGAAAGTAACACCGAGGTGGATAAGAAAAAGAAGAAGAAAAAGAAGAGGACCACAACAGCAACCAAACCAAATGATCTAGGTGTTTTAGTCGTGGACGAAGATCCTGTCTGGCAGAAGCTAATAATTATTGAAGAGGATAATGTTGATAATTCGACTGATGAGGAGCCCCAAGTCAATGAAGATATTGAGGTTAAGAGAATGAGGAGGCTTCAAGAACTAAAAGCCAAGCGACCATATAATTCCATAAGTGAAGATGGAAGTGGTTGA

Protein sequence

MSVESKSFKEYLKRYESNTEVDKKKKKKKKRTTTATKPNDLGVLVVDEDPVWQKLIIIEEDNVDNSTDEEPQVNEDIEVKRMRRLQELKAKRPYNSISEDGSG

Homology

[Close]

BLAST of CmaCh20G009590 vs. TrEMBL
Match: A0A0A0LTH5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G428990 PE=4 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 1.0e-36
Identity = 87/103 (84.47%), Postives = 93/103 (90.29%), Query Frame = 1


Query: 1   MSVESKSFKEYLKRYESNTEVDKKKKKKKKRTTTATKPNDLGVLVVDEDPVWQKLIIIEE 60
           MS +SKS +EYLKRYESNTE +KKKKKKKK TT   KPN LGVLVVDEDPVWQK IIIEE
Sbjct: 2   MSAKSKSLQEYLKRYESNTEEEKKKKKKKK-TTATNKPNALGVLVVDEDPVWQKPIIIEE 61

Query: 61  DNVDNSTDEEPQVNEDIEVKRMRRLQELKAKRPYNSISEDGSG 104
           DN DNSTDEEPQV+ED+EVKRMRRL+ELKAKRPYNSISEDGSG
Sbjct: 62  DNADNSTDEEPQVDEDVEVKRMRRLEELKAKRPYNSISEDGSG 103

[Close]

BLAST of CmaCh20G009590 vs. TrEMBL
Match: M5VJ33_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa005799mg PE=4 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 3.4e-24
Identity = 68/104 (65.38%), Postives = 83/104 (79.81%), Query Frame = 1


Query: 1   MSVESKSFKEYLKRYESNTEVDKKKKKKKKRTTTATKPNDLGVLVVDEDPVWQKLIIIEE 60
           M+  SKS KEYLKRYE   E +KKKKKKKK+    +K   +GVLVVDEDP WQK + +EE
Sbjct: 1   MASSSKSLKEYLKRYEGINEEEKKKKKKKKQ---KSKAEAMGVLVVDEDPAWQKPVNLEE 60

Query: 61  DNVDNSTDEE-PQVNEDIEVKRMRRLQELKAKRPYNSISEDGSG 104
           DN +NSTDE+ P V+EDIE+KRMRRL+ L+AKRP+N+ISEDGSG
Sbjct: 61  DNDNNSTDEDKPFVDEDIEIKRMRRLEALRAKRPFNAISEDGSG 101

[Close]

BLAST of CmaCh20G009590 vs. TrEMBL
Match: D7TU07_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_02s0012g00850 PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 7.5e-24
Identity = 62/99 (62.63%), Postives = 83/99 (83.84%), Query Frame = 1


Query: 5   SKSFKEYLKRYESNTEVDKKKKKKKKRTTTATKPNDLGVLVVDEDPVWQKLIIIEEDNVD 64
           S S KEYLKRYESN E + KKKKKKK+ T   KP+  GVLVVDEDP WQK + +EE++ D
Sbjct: 4   STSLKEYLKRYESNNEEETKKKKKKKKKT---KPDVSGVLVVDEDPTWQKPVKLEEEHDD 63

Query: 65  NSTDEEPQVNEDIEVKRMRRLQELKAKRPYNSISEDGSG 104
           ++ +E+PQ++EDIEVKRM+RL++L++KRPY+++SEDGSG
Sbjct: 64  SADEEKPQIDEDIEVKRMKRLEQLRSKRPYHALSEDGSG 99

[Close]

BLAST of CmaCh20G009590 vs. TrEMBL
Match: A0A0K9RSJ4_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_033560 PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 1.7e-23
Identity = 63/99 (63.64%), Postives = 79/99 (79.80%), Query Frame = 1


Query: 5   SKSFKEYLKRYESNTEVDKKKKKKKKRTTTATKPNDLGVLVVDEDPVWQKLIIIEEDNVD 64
           S S KEYLK+YESN+  ++KKKKKKK+T         GVLVVDEDPVWQK + +EED  +
Sbjct: 6   SSSLKEYLKKYESNSAAEEKKKKKKKKTKAVAA----GVLVVDEDPVWQKQVNLEEDEEN 65

Query: 65  NSTDEEPQVNEDIEVKRMRRLQELKAKRPYNSISEDGSG 104
           +S DE+PQV+EDIEVKRM+RL++L+A+R YN ISEDGSG
Sbjct: 66  DSPDEKPQVDEDIEVKRMKRLEQLRARRSYNEISEDGSG 100

[Close]

BLAST of CmaCh20G009590 vs. TrEMBL
Match: A0A0S3SYQ0_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.09G153700 PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 4.9e-23
Identity = 63/100 (63.00%), Postives = 83/100 (83.00%), Query Frame = 1


Query: 5   SKSFKEYLKRYESNTEVDKKKKKKKKRTTTATKPNDLGVLVVDEDPVWQKLIIIEEDNVD 64
           S S K+YLKRYESNTE +KKKKKKK++     +P   G+LVVDEDP+WQK + + E+N D
Sbjct: 3   SNSLKDYLKRYESNTEEEKKKKKKKQKKKN--QPQTTGLLVVDEDPMWQKPVDLGEENND 62

Query: 65  NSTDEE-PQVNEDIEVKRMRRLQELKAKRPYNSISEDGSG 104
           NS+DEE P V+EDI+VKRM+RL++L+A+RPY++ISEDGSG
Sbjct: 63  NSSDEEKPLVDEDIDVKRMKRLEQLRARRPYHAISEDGSG 100

[Close]

BLAST of CmaCh20G009590 vs. TAIR10
Match: AT1G31870.1 (AT1G31870.1 unknown protein)

HSP 1 Score: 109.0 bits (271), Expect = 1.8e-24
Identity = 62/100 (62.00%), Postives = 81/100 (81.00%), Query Frame = 1


Query: 5   SKSFKEYLKRYESNTEVDKKKKKKKKRTTTATKPNDLGVLVVDEDPVWQKLIIIEED-NV 64
           ++S K+YLK+YES+  V+KKKKKKK++  +  KP   GVLVVDEDPVWQK +  EED N 
Sbjct: 4   NQSLKDYLKKYESSDVVEKKKKKKKQKKPS--KPEPRGVLVVDEDPVWQKQVDPEEDENE 63

Query: 65  DNSTDEEPQVNEDIEVKRMRRLQELKAKRPYNSISEDGSG 104
           D+S +E P V+EDIEVKRMRRL+E+KA+R +N+I+EDGSG
Sbjct: 64  DDSAEETPLVDEDIEVKRMRRLEEIKARRAHNAIAEDGSG 101

[Close]

BLAST of CmaCh20G009590 vs. NCBI nr
Match: gi|659125712|ref|XP_008462822.1| (PREDICTED: BUD13 homolog [Cucumis melo])

HSP 1 Score: 166.8 bits (421), Expect = 2.0e-38
Identity = 88/103 (85.44%), Postives = 94/103 (91.26%), Query Frame = 1


Query: 1   MSVESKSFKEYLKRYESNTEVDKKKKKKKKRTTTATKPNDLGVLVVDEDPVWQKLIIIEE 60
           MS +SKS +EYLKRYESNTE +KKKKKKKKRTT   KPN LGVLVVDEDPVWQK IIIEE
Sbjct: 2   MSAKSKSLQEYLKRYESNTEEEKKKKKKKKRTTATNKPNALGVLVVDEDPVWQKPIIIEE 61

Query: 61  DNVDNSTDEEPQVNEDIEVKRMRRLQELKAKRPYNSISEDGSG 104
           DN DNSTDEEPQV+ED+EVKRMRRL+ELKAKRPYNSISEDGSG
Sbjct: 62  DNADNSTDEEPQVDEDVEVKRMRRLEELKAKRPYNSISEDGSG 104

[Close]

BLAST of CmaCh20G009590 vs. NCBI nr
Match: gi|778673687|ref|XP_011650042.1| (PREDICTED: BUD13 homolog [Cucumis sativus])

HSP 1 Score: 160.6 bits (405), Expect = 1.4e-36
Identity = 87/103 (84.47%), Postives = 93/103 (90.29%), Query Frame = 1


Query: 1   MSVESKSFKEYLKRYESNTEVDKKKKKKKKRTTTATKPNDLGVLVVDEDPVWQKLIIIEE 60
           MS +SKS +EYLKRYESNTE +KKKKKKKK TT   KPN LGVLVVDEDPVWQK IIIEE
Sbjct: 2   MSAKSKSLQEYLKRYESNTEEEKKKKKKKK-TTATNKPNALGVLVVDEDPVWQKPIIIEE 61

Query: 61  DNVDNSTDEEPQVNEDIEVKRMRRLQELKAKRPYNSISEDGSG 104
           DN DNSTDEEPQV+ED+EVKRMRRL+ELKAKRPYNSISEDGSG
Sbjct: 62  DNADNSTDEEPQVDEDVEVKRMRRLEELKAKRPYNSISEDGSG 103

[Close]

BLAST of CmaCh20G009590 vs. NCBI nr
Match: gi|694426790|ref|XP_009341060.1| (PREDICTED: BUD13 homolog [Pyrus x bretschneideri])

HSP 1 Score: 128.6 bits (322), Expect = 6.1e-27
Identity = 71/104 (68.27%), Postives = 86/104 (82.69%), Query Frame = 1


Query: 1   MSVESKSFKEYLKRYESNTEVDKKKKKKKKRTTTATKPNDLGVLVVDEDPVWQKLIIIEE 60
           M+  SKS KEYLKRYE N E DKKKKKK K+  T  +P  +GVLVVDEDPVWQK + +EE
Sbjct: 1   MASSSKSLKEYLKRYEVNNEEDKKKKKKNKKQKTKAEP--MGVLVVDEDPVWQKPVNVEE 60

Query: 61  DNVDNSTDEE-PQVNEDIEVKRMRRLQELKAKRPYNSISEDGSG 104
           DN DNS+DE+ P V+EDIE+KRM+RLQ+L+A+RP+NSISEDGSG
Sbjct: 61  DNGDNSSDEDKPVVDEDIEIKRMKRLQQLRARRPFNSISEDGSG 102

[Close]

BLAST of CmaCh20G009590 vs. NCBI nr
Match: gi|658010471|ref|XP_008340484.1| (PREDICTED: BUD13 homolog [Malus domestica])

HSP 1 Score: 128.6 bits (322), Expect = 6.1e-27
Identity = 71/104 (68.27%), Postives = 86/104 (82.69%), Query Frame = 1


Query: 1   MSVESKSFKEYLKRYESNTEVDKKKKKKKKRTTTATKPNDLGVLVVDEDPVWQKLIIIEE 60
           M+  SKS KEYLKRYE N E DKKKKKK K+  T  +P  +GVLVVDEDPVWQK + +EE
Sbjct: 1   MASSSKSLKEYLKRYEVNNEEDKKKKKKNKKQKTKAEP--MGVLVVDEDPVWQKPVNVEE 60

Query: 61  DNVDNSTDEE-PQVNEDIEVKRMRRLQELKAKRPYNSISEDGSG 104
           DN DNS+DE+ P V+EDIE+KRM+RLQ+L+A+RP+NSISEDGSG
Sbjct: 61  DNGDNSSDEDKPVVDEDIEIKRMKRLQQLRARRPFNSISEDGSG 102

[Close]

BLAST of CmaCh20G009590 vs. NCBI nr
Match: gi|694321014|ref|XP_009351676.1| (PREDICTED: BUD13 homolog [Pyrus x bretschneideri])

HSP 1 Score: 128.6 bits (322), Expect = 6.1e-27
Identity = 71/104 (68.27%), Postives = 86/104 (82.69%), Query Frame = 1


Query: 1   MSVESKSFKEYLKRYESNTEVDKKKKKKKKRTTTATKPNDLGVLVVDEDPVWQKLIIIEE 60
           M+  SKS KEYLKRYE N E DKKKKKK K+  T  +P  +GVLVVDEDPVWQK + +EE
Sbjct: 1   MASSSKSLKEYLKRYEVNNEEDKKKKKKNKKQKTKAEP--MGVLVVDEDPVWQKPVNVEE 60

Query: 61  DNVDNSTDEE-PQVNEDIEVKRMRRLQELKAKRPYNSISEDGSG 104
           DN DNS+DE+ P V+EDIE+KRM+RLQ+L+A+RP+NSISEDGSG
Sbjct: 61  DNGDNSSDEDKPVVDEDIEIKRMKRLQQLRARRPFNSISEDGSG 102

The following BLAST results are available for this feature:

BLAST of CmaCh20G009590 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh20G009590 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LTH5_CUCSA	1.0e-36	84.47	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G428990 PE=4 SV=1	[more]
M5VJ33_PRUPE	3.4e-24	65.38	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa005799mg PE=4 SV=1	[more]
D7TU07_VITVI	7.5e-24	62.63	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_02s0012g00850 PE=4 SV=...	[more]
A0A0K9RSJ4_SPIOL	1.7e-23	63.64	Uncharacterized protein OS=Spinacia oleracea GN=SOVF_033560 PE=4 SV=1	[more]
A0A0S3SYQ0_PHAAN	4.9e-23	63.00	Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.09G153700 PE=...	[more]

BLAST of CmaCh20G009590 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G31870.1	1.8e-24	62.00	unknown protein	[more]

BLAST of CmaCh20G009590 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659125712\|ref\|XP_008462822.1\|	2.0e-38	85.44	PREDICTED: BUD13 homolog [Cucumis melo]	[more]
gi\|778673687\|ref\|XP_011650042.1\|	1.4e-36	84.47	PREDICTED: BUD13 homolog [Cucumis sativus]	[more]
gi\|694426790\|ref\|XP_009341060.1\|	6.1e-27	68.27	PREDICTED: BUD13 homolog [Pyrus x bretschneideri]	[more]
gi\|658010471\|ref\|XP_008340484.1\|	6.1e-27	68.27	PREDICTED: BUD13 homolog [Malus domestica]	[more]
gi\|694321014\|ref\|XP_009351676.1\|	6.1e-27	68.27	PREDICTED: BUD13 homolog [Pyrus x bretschneideri]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005829	cytosol
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh20G009590.1	CmaCh20G009590.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh20G009590	Watermelon (97103) v1	cmawmB535
CmaCh20G009590	Cucurbita pepo (Zucchini)	cmacpeB565
CmaCh20G009590	Cucurbita pepo (Zucchini)	cmacpeB585
CmaCh20G009590	Bottle gourd (USVL1VR-Ls)	cmalsiB507
CmaCh20G009590	Cucumber (Gy14) v2	cgybcmaB220
CmaCh20G009590	Melon (DHL92) v3.6.1	cmamedB573
CmaCh20G009590	Silver-seed gourd	carcmaB1308
CmaCh20G009590	Cucumber (Chinese Long) v3	cmacucB0653
CmaCh20G009590	Watermelon (97103) v2	cmawmbB571
CmaCh20G009590	Wax gourd	cmawgoB0696
CmaCh20G009590	Cucurbita maxima (Rimu)	cmacmaB469
CmaCh20G009590	Cucumber (Gy14) v1	cgycmaB0116
CmaCh20G009590	Cucurbita moschata (Rifu)	cmacmoB551
CmaCh20G009590	Cucurbita moschata (Rifu)	cmacmoB554
CmaCh20G009590	Wild cucumber (PI 183967)	cmacpiB549
CmaCh20G009590	Cucumber (Chinese Long) v2	cmacuB544
CmaCh20G009590	Melon (DHL92) v3.5.1	cmameB493
CmaCh20G009590	Watermelon (Charleston Gray)	cmawcgB484